ID:

dpe_90

 Coordinate:

scaffold_52:413349-413413 +

 Confidence:

Known Ortholog

 Class:

Canonical miRNA

 Genomic Locale:

intron

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-33.1 -33.1 -33.0

Flybase annnotation

intron [Dper\GL22981-in]

No Repeatable elements found

Sense Strand Reads

CGTGTCTCAGCATGTGAGAGAGCGGCTCCTTTCCCTGGACCCCATCGCTCGCTGTAAATTGTAATGGCCAAAGCTTTTTTGTTGGTAGCAGCTTGGTGTTACTTCTTACAGTGAGTGTGGAGCGTTTCCACAAGCATCGACGAAAGTGAATACGAAATCAGATTT

***********************************.((((.(((.((((((((((((...((((..(((((.(((.((........)).)))))))).))))...)))))))))))))))...))))..************************************ 		Read size # Mismatch Hit Count Total Norm Total V057

head

 V050

head

 V042

embryo

 M042

female body

 M021

embryo

 V111

male body
............................................................................................TTGGTGTTACTTCTTACAGTGA................................................... 22 0 1 192.00 192 42 53 46 23 24 4
............................................................................................TTGGTGTTACTTCTTACAGTG.................................................... 21 0 1 19.00 19 3 9 4 2 0 1
..................................................GCTGTAAATTGTAATGGCCAAAG............................................................................................ 23 0 1 9.00 9 4 5 0 0 0 0
..................................................GCTGTAAATTGTAATGGCCAAAGCT.......................................................................................... 25 0 1 9.00 9 6 2 1 0 0 0
..................................................GCTGTAAATTGTAATGGCCA............................................................................................... 20 0 1 8.00 8 4 2 0 2 0 0
..................................................GCTGTAAATTGTAATGGCCAAA............................................................................................. 22 0 1 7.00 7 4 3 0 0 0 0
...........................................................................................CTTGGTGTTACTTCTTACAGTGA................................................... 23 0 1 6.00 6 1 3 1 1 0 0
............................................................................................TTGGTGTTACTTCTTACAGTGG................................................... 22 1 1 5.00 5 0 0 0 0 5 0
............................................................................................TTGGTGTTACTTCTTACAGTGT................................................... 22 1 1 5.00 5 3 2 0 0 0 0
..................................................GCTGTAAATTGTAATGGCCAA.............................................................................................. 21 0 1 4.00 4 3 0 0 1 0 0
..............................TTCCCTGGACCCCATCGCTC................................................................................................................... 20 0 1 4.00 4 2 2 0 0 0 0
...........................................................................................CTTGGTGTTACTTCTTACAGTG.................................................... 22 0 1 3.00 3 0 2 0 0 0 1
..........................................................................TTTTTTGTTGGTAGCAGC......................................................................... 18 0 2 3.00 6 3 0 0 0 3 0
....................................................TGTAAATTGTAATGGCCAAAGCT.......................................................................................... 23 0 1 3.00 3 2 1 0 0 0 0
.............................................................................................TGGTGTTACTTCTTACAGTGA................................................... 21 0 1 3.00 3 0 1 0 2 0 0
...........................................................................................CTTGGTGTTACTTCTTACAGT..................................................... 21 0 1 3.00 3 1 1 0 0 1 0
............................................................................................TTGGTGTTACTTCTTACAGTTA................................................... 22 1 1 2.00 2 1 0 1 0 0 0
............................................................................................TTGGTGTTTCTTCTTACAGTGA................................................... 22 1 1 2.00 2 0 0 0 2 0 0
..................................................GCTGTAAATTGTAATGGCCAAAT............................................................................................ 23 1 1 2.00 2 2 0 0 0 0 0
..................................................GCTGTAAATTGTAATGGCCAAAGC........................................................................................... 24 0 1 2.00 2 0 0 0 2 0 0
............................................................................................TTGGGGTTACTTCTTACAGTGA................................................... 22 1 1 2.00 2 0 0 2 0 0 0
............................................................................................TTGGTGTTACTTCTTACCGTGA................................................... 22 1 1 1.00 1 0 0 1 0 0 0
...........................................................................................GTTGGTGTTACTTCTTACAGTG.................................................... 22 1 1 1.00 1 0 0 0 1 0 0
..................................................GCTGTAAATTGCAATGGCCAAAG............................................................................................ 23 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TTGGTGGTACTTCTTACAGTGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TTGGTGCTACTTCTTACAGTGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TTGGTGTTACCTCTTACCGTGA................................................... 22 2 1 1.00 1 0 0 1 0 0 0
...............................TCCCTGGACCCCATCGCTC................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0
............................................................................................TTGATGTTACTTCTTACAGTTA................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TTGGTGTTACTTCTTACAGTGAA.................................................. 23 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TTGGTGTTACTTGTTACAGTGA................................................... 22 1 1 1.00 1 0 0 0 0 1 0
...........................................................................................CTTGGGGTTACTTCTTACAGTGT................................................... 23 2 1 1.00 1 1 0 0 0 0 0
............................................................................................GTGGTGTTACTTCTTACAGTGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..............................TTCCCTGGACCCCATCCCGC................................................................................................................... 20 2 1 1.00 1 1 0 0 0 0 0
..................................................GCTGTAGATTGTAATGGCCAAAGC........................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
..................................................GCTGTAAATTGTAATGGCCAAT............................................................................................. 22 1 1 1.00 1 0 0 0 0 0 1
............................................................................................TTGCTGTTGCTTCTTACAGTGA................................................... 22 2 1 1.00 1 0 0 0 1 0 0
..................................................GCTGTTAATTGTAATGGCCA............................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TTGGTGTTACTTCTTACGGTGA................................................... 22 1 1 1.00 1 0 1 0 0 0 0
............................................................................................TTGGTGTTACTTCTTACAGT..................................................... 20 0 1 1.00 1 1 0 0 0 0 0
............................................................................................TTGGTGTTACTTCTTACA....................................................... 18 0 1 1.00 1 0 0 0 1 0 0
............................................................................................TTGGTGCTACTTCTCACAGTGA................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..................................................GCTGTAAATTGTAATGGCCCAA............................................................................................. 22 1 1 1.00 1 0 1 0 0 0 0
............................................................................................TTGGTGTTACTTCTTACATTGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................GCTGTAAATTGTAATGCCCAAAG............................................................................................ 23 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................CTTGGTGTTACTTCTTACAGTGT................................................... 23 1 1 1.00 1 0 0 1 0 0 0
..................................................GCCGTAAATTGTGATGTCCAAAGCT.......................................................................................... 25 3 1 1.00 1 1 0 0 0 0 0
............................................................................................TTGGTGTTACTTCTTACATTGT................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..................................................GCTGTAAATTGTAATGGCC................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0
............................................................................................TGGGTGTTAATTCTTACAGTG.................................................... 21 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TTGGTGTTACTTCTAACGGTT.................................................... 21 3 1 1.00 1 1 0 0 0 0 0
..................................................GCTGTAAATTGCAATGGCCCAA............................................................................................. 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TTGGTGCTAGTTCTTACAGTGA................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..................................................GCTGTAAATTGTAATGGCAAA.............................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TTGGTGTTACTTCTTACAGTAA................................................... 22 1 1 1.00 1 0 0 1 0 0 0
..................................................GCTGTAAATTGGAATGGCAAA.............................................................................................. 21 2 2 0.50 1 1 0 0 0 0 0
............................................................................................TTGGTTTTACTTCTTACCGTTA................................................... 22 3 2 0.50 1 1 0 0 0 0 0
..........................................................................TTTTTTGTTGGTATCAGC......................................................................... 18 1 3 0.33 1 0 1 0 0 0 0
............................................................................................TGGGTGTTAGGTCTTACAGTGA................................................... 22 3 3 0.33 1 1 0 0 0 0 0
............................................................................................TTGGTGTGCCTTCTTTCAGTGA................................................... 22 3 5 0.20 1 1 0 0 0 0 0
..................................................GATGTAAATCGGAATGGCCAA.............................................................................................. 21 3 8 0.13 1 1 0 0 0 0 0
.................................................................................................................................CCAAGCATCGACGTACGT.................. 18 3 20 0.05 1 0 0 0 1 0 0

Anti-sense strand reads

GCACAGAGTCGTACACTCTCTCGCCGAGGAAAGGGACCTGGGGTAGCGAGCGACATTTAACATTACCGGTTTCGAAAAAACAACCATCGTCGAACCACAATGAAGAATGTCACTCACACCTCGCAAAGGTGTTCGTAGCTGCTTTCACTTATGCTTTAGTCTAAA

************************************.((((.(((.((((((((((((...((((..(((((.(((.((........)).)))))))).))))...)))))))))))))))...))))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total M042

female body

 V111

male body
.................................................................................................................................GGTTCGTAGCTGCATGCAC................. 19 3 9 1.78 16 14 2
.................................................................................................................................GGTTCGTAGCTGCATGCACT................ 20 3 5 0.40 2 0 2
.................................................................................................................................GGTTCGTAGCTGCATGCA.................. 18 3 20 0.25 5 4 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droPer2 scaffold_52:413299-413463 + dpe_90 confident CGT---GTCTCAGCATGTGAGAG---AGCGGCTCCTTTCCCTGGACCCCATCGCTCGCTGTAAATTGTAATGGCCAAAGCTTT-TTTG----TTGGTAGCAGCTTGGTGTTACTTCTTACAGTGAGTGTGGA------------GCGTTTCCACA-----------------------------AGCATCG-------------------------------ACGAAAGTGAATAC-----GA----------------------------------------------AAT--------------------------CAGATTT
dp5 XL_group3a:1391592-1391756 - dps-mir-971 Known_mirbase CGT---GTCTCAGCATGTGAGAG---AGCGGCTCCTTTCCCTGGACCCCATCGCTCGCTGTAAATTGTAATGGCCAAAGCTTT-TTTG----TTGGTAGCAGCTTGGTGTTACTTCTTACAGTGAGTGTGGA------------GCGTTTCCACA-----------------------------AGCATCG-------------------------------ACGAAAGTGAATAC-----GA----------------------------------------------AAT--------------------------CAGATTT
droWil2 scf2_1100000004909:6691435-6691591 - dwi_36 confident GGCC------------------------------------------CAATACGCTCGCTGTAAATTGTAGCAATCAAAGCGTTGCCTTTTGCCTCA---CAGCTTGGTGTTACTTCTTACAGTGAGTGTGTGCGTGGCATTG-------------AGTTCAGC-GAACAAG------CCAAACCAATAAAA-------------------------------ACGAAAGTGAATAA-----AA-----------------------------------------TCTCGAAT--------------------------CGAAAAT
droVir3 scaffold_12928:4279694-4279869 - dvi-mir-971 Known_mirbase CAAGC------T------GA------AA--------TGACGT-------CACGCCCGCTGTAAAATGTAATCATCAGAGCGTC-CT------CTC--AACCGCTTGGTGTTACTTCTTACAGTGAGTGCGAC---GGCCCAA-------------GGTCCGAC-C-G------TAAATCATACATATATATATATATATATAAGTATATATATGCCAG----GCTACAGTGAAA------------------------------CC-----------------------AAT--------------------------CAAAAAT
droMoj3 scaffold_6328:350122-350219 + dmo_78 confident CG---------------------------------------------------ACCGCTGTAAATTGTAATCATCAAAGCGTC-TG------CTA--AATCGCTTGGTGTTACTTCTTACAGTGAGCGCGGC---GCTCGAA--------------------------------------------------------------------------------ACTACAGTGA---------------------------------------------------------AAC--------------------------T-AGCAT
droGri2 scaffold_14853:994385-994537 - dgr_60 candidate-rescued CGAACTT---------------G---AA--------TGACGT-------CACGCCCGCTGTAATATGTAATCATCAAAGCGTG-TAT-----TTT--ACTCGCTTGGTGTTACTTCTTACAGTGAGTGCGAC---GGCCACA-------------CGTCCAGC-GGAGGAGAGTGAA-------------------------------------TCTAGCGCAGAGAATTCAAACA-----GA----------------------------------------------GAT--------------------------AGAGTGT
droAna3 scaffold_13117:3891773-3892001 + dan_51 confident CGTTGTTTCGCTGCATGTGAGAA---AA--------TTCCGTGGCTGGCATCGTTCACTGTAAATTGTAACCATCAAAGCGTT-TTTT----ATCAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGAGCC---AGCTGGA--GC------ACATATT-------A----------------------AA-------------------------------AAAAAAATAAATAA-----AAAATAAAAATGTCTTTGTAAAGCCCTTTAAAAAACGCGAAAATTTTT---GGAATTTAAATTTGAAC-ATTTGAGTCTGATTT
droBip1 scf7180000396383:483074-483302 - CGTTGTTTCGCTGCATGTGAGAA---AA--------TTCCGTGGCTGGCATCGTTCACTGTAAATTGTAACCATCAAAGCGTT-TTTT----ATCAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGAGCC---AGCTGGA--GC------ACACATTTAACTGAAAAAG------ACTAAAA------------------------------CCTA----------------AAAAAAAAAAGCAAGAATGTATTT--AAAACCCTTTA-AAAACGCGAAAATTTTCAATTGAAATT--------------TGAATCTGATTT
droKik1 scf7180000302544:775403-775601 - CGTTC--------------AGAGCGAAA--------TTCCTTGGCTGGCAGCGCACACTGTAAATTGTAATCATCAAAGCGTT-TTT-----CTCAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGCGCC---AGTACACGTAC------ACA---------CGGCAAGAAAGAA-------------------------------------CCTT----------------AA-----AAAGT------ATATTTGAAA--------AAAAAATATAAAAATTAAA---GGAAATTCGAT--GAAGGATTT---TCTGATTT
droFic1 scf7180000454050:893097-893251 + CGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCATCGCCCGCTGTAAATTGTAATCATCAAAGCGTT-TT------CTCAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCC---AGTCCGT--AC------ACA-----------------------------AA----G-------------------------------AGAAAACCCCATAT-----GA----------------------------------------------AAC--------------------------CCCCTTT
droEle1 scf7180000490546:934577-934689 - CGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCATCGCTCGCTGTAAATTGTAATCATCAAAGCGTT-TTT-----CTCAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000779914:464173-464285 - CGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCATCGTTCGCTGTAAATTGTAATCATCAAAGCGTT-TTT-----TTCAGAACCGCTTGGTGTTACTTCTTACAGTGAGTGTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000298389:643170-643282 + CGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCATCGCCCGCTGTAAATTGTAATCATCAAAGCGTT-TTT-----CTCAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000413998:42797-42908 + CGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCATCGCTCGCTGTAAATTGTAATCATCAAAGCGTT-TT------CTCAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409110:1404453-1404595 + CGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCATCGCTCGCTGTAAATTGTAATCATCAAAGCGTT-TT------CTCAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCC---AGTCCGT--AC------ACAC-------------------------------A------------------------------------GAAAGAAAATAT-----GA----------------------------------------------A-----------------------------------
dm3 chrX:12956079-12956190 + dme-mir-971 Known_mirbase CGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCATCGCTCGCTGTAAATTGTAATCATCAAAGCGTT-TT------CTCAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 x:12305308-12305419 + dsi_358 confident CGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCATCGCTCGCTGTAAATTGTAATCATCAAAGCGTT-TT------CTCAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_21:701207-701318 + dse_66 confident CGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCATCGCTCGCTGTAAATTGTAATCATCAAAGCGTT-TT------CTCAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 X:7229759-7229870 + dya_52 confident CGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCATCGCTCGCTGTAAATTGTAATCATCAAAGCGTT-TT------CTCAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4690:13914759-13914870 - der_60 confident CGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCATCGCCCGCTGTAAATTGTAATCATCAAAGCGTT-TT------CTCAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
CGT---GTCTCAGCATGTGAGAG---AGCGGCTCCTTTCCCTGGACCCCATCGCTCGCTGTAAATTGTAATGGCCAAAGCTTT-TTTG----TTGGTAGCAGCTTGGTGTTACTTCTTACAGTGAGTGTGGA------------GCGTTTCCACA-----------------------------AGCATCG-------------------------------ACGAAAGTGAATAC-----GA----------------------------------------------AAT--------------------------CAGATTTSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
.......................................................................................................TTGGTGTTACTTCTTACAGTGA........................................................................................................................................................................................................221192.0019224234653424
.......................................................................................................TTGGTGTTACTTCTTACAGTG.........................................................................................................................................................................................................21119.0019024931
........................................................GCTGTAAATTGTAATGGCCAAAG......................................................................................................................................................................................................................................................2319.009000540
........................................................GCTGTAAATTGTAATGGCCAAAGCT....................................................................................................................................................................................................................................................2519.009001260
........................................................GCTGTAAATTGTAATGGCCA.........................................................................................................................................................................................................................................................2018.008020240
........................................................GCTGTAAATTGTAATGGCCAAA.......................................................................................................................................................................................................................................................2217.007000340
......................................................................................................CTTGGTGTTACTTCTTACAGTGA........................................................................................................................................................................................................2316.006011310
.......................................................................................................TTGGTGTTACTTCTTACAGTGG........................................................................................................................................................................................................2215.005500000
.......................................................................................................TTGGTGTTACTTCTTACAGTGT........................................................................................................................................................................................................2215.005000230
........................................................GCTGTAAATTGTAATGGCCAA........................................................................................................................................................................................................................................................2114.004010030
....................................TTCCCTGGACCCCATCGCTC.............................................................................................................................................................................................................................................................................2014.004000220
......................................................................................................CTTGGTGTTACTTCTTACAGTG.........................................................................................................................................................................................................2213.003000201
................................................................................TTT-TTTG----TTGGTAGCAGC..............................................................................................................................................................................................................................1823.006300030
..........................................................TGTAAATTGTAATGGCCAAAGCT....................................................................................................................................................................................................................................................2313.003000120
........................................................................................................TGGTGTTACTTCTTACAGTGA........................................................................................................................................................................................................2113.003020100
......................................................................................................CTTGGTGTTACTTCTTACAGT..........................................................................................................................................................................................................2113.003100110
........................................................GCTGTAAATTGTAATGGCCAAAT......................................................................................................................................................................................................................................................2312.002000020
........................................................GCTGTAAATTGTAATGGCCAAAGC.....................................................................................................................................................................................................................................................2412.002020000
.....................................TCCCTGGACCCCATCGCTC.............................................................................................................................................................................................................................................................................1911.001000010
.......................................................................................................TTGGTGTTACTTCTTACAGTGAA.......................................................................................................................................................................................................2311.001000010
........................................................GCTGTAAATTGTAATGGCCAAT.......................................................................................................................................................................................................................................................2211.001000001
.......................................................................................................TTGGTGTTACTTCTTACAGT..........................................................................................................................................................................................................2011.001000010
.......................................................................................................TTGGTGTTACTTCTTACA............................................................................................................................................................................................................1811.001010000
......................................................................................................CTTGGTGTTACTTCTTACAGTGT........................................................................................................................................................................................................2311.001001000
........................................................GCTGTAAATTGTAATGGCC..........................................................................................................................................................................................................................................................1911.001000010
dp5
CGT---GTCTCAGCATGTGAGAG---AGCGGCTCCTTTCCCTGGACCCCATCGCTCGCTGTAAATTGTAATGGCCAAAGCTTT-TTTG----TTGGTAGCAGCTTGGTGTTACTTCTTACAGTGAGTGTGGA------------GCGTTTCCACA-----------------------------AGCATCG-------------------------------ACGAAAGTGAATAC-----GA----------------------------------------------AAT--------------------------CAGATTTSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
.......................................................................................................TTGGTGTTACTTCTTACAGTGA........................................................................................................................................................................................................221538.00538020311864109355004
........................................................GCTGTAAATTGTAATGGCCAAAGC.....................................................................................................................................................................................................................................................24170.00700818301040000
......................................................................................................CTTGGTGTTACTTCTTACAGTGA........................................................................................................................................................................................................23142.004204255620000
.......................................................................................................TTGGTGTTACTTCTTACAGTG.........................................................................................................................................................................................................21124.002401041261000
........................................................GCTGTAAATTGTAATGGCCAAAGCT....................................................................................................................................................................................................................................................25114.00140247100000
........................................................GCTGTAAATTGTAATGGCCAAAG......................................................................................................................................................................................................................................................23112.00120700050000
.......................................................................................................TTGGTGTTACTTCTTACAGTGT........................................................................................................................................................................................................22111.00110000380000
........................................................................................................TGGTGTTACTTCTTACAGTGA........................................................................................................................................................................................................21110.001001000000000
........................................................GCTGTAAATTGTAATGGCCA.........................................................................................................................................................................................................................................................2018.0080400040000
........................................................GCTGTAAATTGTAATGGCCAAA.......................................................................................................................................................................................................................................................2217.0070001050001
.......................................................................................................TTGGTGTTACTTCTTACAGTGAA.......................................................................................................................................................................................................2316.0060301000002
.......................................................................................................TTGGTGTTACTTCTTACAG...........................................................................................................................................................................................................1914.0040021010000
........................................................GCTGTAAATTGTAATGGCCAA........................................................................................................................................................................................................................................................2114.0040101020000
......................................................................................................CTTGGTGTTACTTCTTACAGTG.........................................................................................................................................................................................................2213.0030110100000
........................................................GCTGTAAATTGTAATGGCCAAAGCC....................................................................................................................................................................................................................................................2512.0020002000000
...........................................................................................................TGTTACTTCTTACAGTGA........................................................................................................................................................................................................1812.0020100100000
.....................................TCCCTGGACCCCATCGCTC.............................................................................................................................................................................................................................................................................1912.0020002000000
.......................................................................................................TTGGTGTTACTTCTTACAGTGAAA......................................................................................................................................................................................................2411.0010100000000
......................................................................................................CTTGGTGTTACTTCTTACAGC..........................................................................................................................................................................................................2111.0010001000000
......................................................................................................CTTGGTGTTACTTCTTACAG...........................................................................................................................................................................................................2011.0010010000000
.........................................................CTGTAAATTGTAATGGCCAAAGCT....................................................................................................................................................................................................................................................2411.0010000010000
.......................................................................................................TTGGTGTTACTTCTTACAGTGC........................................................................................................................................................................................................2211.0010000010000
.........................................................CTGTAAATTGTAATGGCCAAAGA.....................................................................................................................................................................................................................................................2311.0010100000000
........................................................................................................TGGTGTTACTTCTTACAGTG.........................................................................................................................................................................................................2011.0010100000000
...................................TTTCCCTGGACCCCATCGCTC.............................................................................................................................................................................................................................................................................2111.0010001000000
.........................................................................................................GGTGTTACTTCTTACAGTGA........................................................................................................................................................................................................2011.0010100000000
.......................................................................................................TTGGTGTTACTTCTTACAGTGG........................................................................................................................................................................................................2211.0010010000000
......................................................................................................CTTGGTGTTACTTCTTACAGT..........................................................................................................................................................................................................2111.0010000100000
.......................................................................................................TTGGTGTTACTTCTTACAGT..........................................................................................................................................................................................................2011.0010000100000
..........................................................TGTAAATTGTAATGGCCAAAGCT....................................................................................................................................................................................................................................................2311.0010001000000
................................................................................TTT-TTTG----TTGGTAGCAGC..............................................................................................................................................................................................................................1821.0020020000000
.......................................................................................................TTGGTGTTACTTCTTACAC...........................................................................................................................................................................................................1911.0010010000000
droWil2
GGCC------------------------------------------CAATACGCTCGCTGTAAATTGTAGCAATCAAAGCGTTGCCTTTTGCCTCA---CAGCTTGGTGTTACTTCTTACAGTGAGTGTGTGCGTGGCATTG-------------AGTTCAGC-GAACAAG------CCAAACCAATAAAA-------------------------------ACGAAAGTGAATAA-----AA-----------------------------------------TCTCGAAT--------------------------CGAAAATSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
.......................................................................................................TTGGTGTTACTTCTTACAGTGA........................................................................................................................................................................................................2214923.00492343116785403777
.......................................................................................................TTGGTGTTACTTCTTACAGTG.........................................................................................................................................................................................................211449.00449139028399
.......................................................................................................TTGGTGTTACTTCTTACAGTGT........................................................................................................................................................................................................221118.001180107110
.......................................................................................................TTGGTGTTACTTCTTACAGTGG........................................................................................................................................................................................................22182.0082780022
.......................................................................................................TTGGTGTTACTTCTTACAGT..........................................................................................................................................................................................................20174.0074331166
........................................................GCTGTAAATTGTAGCAATCAAAGC.....................................................................................................................................................................................................................................................24172.00725200128
........................................................................................................TGGTGTTACTTCTTACAGTGA........................................................................................................................................................................................................21122.0022015007
.......................................................................................................TTGGTGTTACTTCTTACAGTGAA.......................................................................................................................................................................................................23120.0020010118
......................................................................................................CTTGGTGTTACTTCTTACAGTGA........................................................................................................................................................................................................23110.001001027
.......................................................................................................TTGGTGTTACTTCTTACAG...........................................................................................................................................................................................................1917.00731003
.......................................................................................................TTGGTGTTACTTCTTACAGTGC........................................................................................................................................................................................................2215.00500104
.......................................................................................................TTGGTGTTACTTCTTACAGTGAT.......................................................................................................................................................................................................2314.00400013
........................................................................................................TGGTGTTACTTCTTACAGTG.........................................................................................................................................................................................................2013.00311001
.........................................................................................................GGTGTTACTTCTTACAGTGA........................................................................................................................................................................................................2012.00201001
.......................................................................................................TTGGTGTTACTTCTTACAGTA.........................................................................................................................................................................................................2112.00200002
.......................................................................................................TTGGTGTTACTTCTTACAGTGAAA......................................................................................................................................................................................................2412.00201100
......................................................................................................CTTGGTGTTACTTCTTACAGTGT........................................................................................................................................................................................................2311.00100001
.............................................................................................................................GTGTGTGCGTGGCATTG-------------AGTTC.....................................................................................................................................................................2211.00100001
.......................................................................................................TTGGTGTTACTTCTTACAGTT.........................................................................................................................................................................................................2111.00100001
...........................................................................................................TGTTACTTCTTACAGTGA........................................................................................................................................................................................................1811.00100001
.......................................................................................................TTGGTGTTACTTCTTACAGTGAGT......................................................................................................................................................................................................2411.00100001
.......................................................................................................TTGGTGTTACTTCTTACAC...........................................................................................................................................................................................................1911.00110000
............................................................................................................GTTACTTCTTACAGTGAA.......................................................................................................................................................................................................1811.00101000
.............................................................................................................................GTGTGTGCGTGGCATTG-------------AGTA......................................................................................................................................................................2111.00100001
........................................................................................................TGGTGTTACTTCTTACAGTGT........................................................................................................................................................................................................2111.00100001
.......................................................................................................TTGGTGTTACTTCTTACA............................................................................................................................................................................................................1811.00100001
........................................................................................................TGGTGTTACTTCTTACAGT..........................................................................................................................................................................................................1911.00100001
........................................................................................................TGGTGTTACTTCTTACAGTGAAA......................................................................................................................................................................................................2311.00101000
........................................................GCTGTAAATTGTAGCAATCAAAG......................................................................................................................................................................................................................................................2311.00101000
......................................................................................................CTTGGTGTTACTTCTTACAGTG.........................................................................................................................................................................................................2211.00100001
.......................................................................................................TTGGTGTTACTTCTTACAGTGAG.......................................................................................................................................................................................................2311.00100001
........................................................GCTGTAAATTGTAGCAATC..........................................................................................................................................................................................................................................................1911.00110000
............................................................................................................GTTACTTCTTACAGTGAT.......................................................................................................................................................................................................18100.10100001
droVir3
CAAGC------T------GA------AA--------TGACGT-------CACGCCCGCTGTAAAATGTAATCATCAGAGCGTC-CT------CTC--AACCGCTTGGTGTTACTTCTTACAGTGAGTGCGAC---GGCCCAA-------------GGTCCGAC-C-G------TAAATCATACATATATATATATATATATAAGTATATATATGCCAG----GCTACAGTGAAA------------------------------CC-----------------------AAT--------------------------CAAAAATSizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.......................................................................................................TTGGTGTTACTTCTTACAGTGA........................................................................................................................................................................................................221962.0096205416463200001000078372683302902110000100822221270000053000000000010000000487441300001104020100000
.......................................................................................................TTGGTGTTACTTCTTACAGTG.........................................................................................................................................................................................................211175.0017513153000000000052730211700000711140170000071000000000000000001034600000000000000000
........................................................GCTGTAAAATGTAATCATCAGAGC.....................................................................................................................................................................................................................................................24144.00441509000000000062211102300000000000000002000000000000000000016100000001000000000
.......................................................................................................TTGGTGTTACTTCTTACAGTGT........................................................................................................................................................................................................22135.003500000000010000000100003000000000050000012000000000000000000033700000000000000000
........................................................................................................TGGTGTTACTTCTTACAGTGA........................................................................................................................................................................................................21118.001800160000000000000000000000000000000000001000000000000000000010000000000000000000
.......................................................................................................TTGGTGTTACTTCTTACAGTGG........................................................................................................................................................................................................22113.001301200000000000000000000000000000000000000000000000000000000100000000000000000000
.......................................................................................................TTGGTGTTACTTCTTACAGTGAA.......................................................................................................................................................................................................23112.00120030000000000011010000000000100101000003000000000000000000000000000000000000000
.......................................................................................................TTGGTGTTACTTCTTACAGTGAT.......................................................................................................................................................................................................2319.0090000000000000000010001100000000200000003000000000000000000010000000000000000000
........................................................GCTGTAAAATGTAATCATCAGAG......................................................................................................................................................................................................................................................2317.0070100000000000040000200000000000000000000000000000000000000000000000000000000000
......................................................................................................CTTGGTGTTACTTCTTACAGTGA........................................................................................................................................................................................................2317.0070020000000000010010000000000000100000000000000000000000000011000000000000000000
.......................................................................................................TTGGTGTTACTTCTTACAG...........................................................................................................................................................................................................1914.0040003000000000000000000000000000000000001000000000000000000000000000000000000000
......................................................................................................CTTGGTGTTACTTCTTACAGTG.........................................................................................................................................................................................................2213.0030000000000000010010000000000100000000000000000000000000000000000000000000000000
........................................................GCTGTAAAATGTAATCATCAGA.......................................................................................................................................................................................................................................................2213.0030300000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................CCGCTGTAAAATGTAATCATCAGAGC.....................................................................................................................................................................................................................................................2613.0030100000000000000000000000000000000000000000000000000000000200000000000000000000
.......................................................................................................TTGGTGTTACTTCTTACAGT..........................................................................................................................................................................................................2013.0030000000000000001010000000000000000000000000000000000000000001000000000000000000
.......................................................................................................TTGGTGTTACTTCTTACAGTT.........................................................................................................................................................................................................2112.0020000000000000000000011000000000000000000000000000000000000000000000000000000000
.......................................................................................................TTGGTGTTACTTCTTACAGTGC........................................................................................................................................................................................................2212.0020000000000000000010000000000000000000000000000000000000000001000000000000000000
........................................................................................................TGGTGTTACTTCTTACAGTGT........................................................................................................................................................................................................2111.0010000000000000000000000000000000000000001000000000000000000000000000000000000000
.......................................................................................................TTGGTGTTACTTCTTACAGTGAAA......................................................................................................................................................................................................2411.0010000000000000000000000000000000000000001000000000000000000000000000000000000000
...........................................................................................................TGTTACTTCTTACAGTGAAA......................................................................................................................................................................................................2011.0010000000000000000000000000000000000000001000000000000000000000000000000000000000
............................................................................................................GTTACTTCTTACAGTGAA.......................................................................................................................................................................................................1811.0010000000000000000000000000000000000000001000000000000000000000000000000000000000
.......................................................................................................TTGGTGTTACTTCTTACAGTC.........................................................................................................................................................................................................2111.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................TGTTACTTCTTACAGTGA........................................................................................................................................................................................................1811.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................TGGTGTTACTTCTTACAGTG.........................................................................................................................................................................................................2011.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................GGTGTTACTTCTTACAGTGA........................................................................................................................................................................................................2011.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................TGGTGTTACTTCTTACAGTGAA.......................................................................................................................................................................................................2211.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................TGTTACTTCTTACAGTGAA.......................................................................................................................................................................................................1911.0010000000000000000000000000000000000000001000000000000000000000000000000000000000
...........T------GA------AA--------TGACGT-------CACGCCC.............................................................................................................................................................................................................................................................................1811.0010100000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................TTGGTGTTACTTCTTACAC...........................................................................................................................................................................................................1911.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
droMoj3
CG---------------------------------------------------ACCGCTGTAAATTGTAATCATCAAAGCGTC-TG------CTA--AATCGCTTGGTGTTACTTCTTACAGTGAGCGCGGC---GCTCGAA--------------------------------------------------------------------------------ACTACAGTGA---------------------------------------------------------AAC--------------------------T-AGCATSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
.......................................................................................................TTGGTGTTACTTCTTACAGTGA........................................................................................................................................................................................................221543.0054319051435618914
........................................................GCTGTAAATTGTAATCATCAAAGC.....................................................................................................................................................................................................................................................24140.00402111350
........................................................................................................TGGTGTTACTTCTTACAGTGA........................................................................................................................................................................................................21123.00232200010
......................................................................................................CTTGGTGTTACTTCTTACAGTGA........................................................................................................................................................................................................23120.00206001121
.......................................................................................................TTGGTGTTACTTCTTACAGTG.........................................................................................................................................................................................................21118.0018722340
........................................................GCTGTAAATTGTAATCATCAAAG......................................................................................................................................................................................................................................................2318.008112040
.......................................................................................................TTGGTGTTACTTCTTACAGTGT........................................................................................................................................................................................................2218.008004310
........................................................GCTGTAAATTGTAATCATCA.........................................................................................................................................................................................................................................................2017.007103300
.......................................................................................................TTGGTGTTACTTCTTACAGTGAA.......................................................................................................................................................................................................2313.003200001
.......................................................................................................TTGGTGTTACTTCTTACAGTGAT.......................................................................................................................................................................................................2313.003210000
.......................................................................................................TTGGTGTTACTTCTTACAGT..........................................................................................................................................................................................................2013.003002010
.......................................................................................................TTGGTGTTACTTCTTACAG...........................................................................................................................................................................................................1913.003000030
.........................................................................................................GGTGTTACTTCTTACAGTGA........................................................................................................................................................................................................2012.002200000
......................................................................................................CTTGGTGTTACTTCTTACAGTG.........................................................................................................................................................................................................2212.002010100
........................................................GCTGTAAATTGTAATCATC..........................................................................................................................................................................................................................................................1912.002002000
......................................................................................................CTTGGTGTTACTTCTTACAGT..........................................................................................................................................................................................................2112.002000020
........................................................................................................TGGTGTTACTTCTTACAGTG.........................................................................................................................................................................................................2011.001100000
.............................................................................................................................GCGCGGC---GCTCGAA--------------------------------------------------------------------------------ACTACAG................................................................................................2111.001000001
.......................................................................................................TTGGTGTTACTTCTTACAGTGAC.......................................................................................................................................................................................................2311.001000010
.......................................................CGCTGTAAATTGTAATCATC..........................................................................................................................................................................................................................................................2011.001000100
.......................................................CGCTGTAAATTGTAATCATCA.........................................................................................................................................................................................................................................................2111.001000100
........................................................GCTGTAAATTGTAATCATCAAAGA.....................................................................................................................................................................................................................................................2411.001000010
...........................................................................................................TGTTACTTCTTACAGTGA........................................................................................................................................................................................................1811.001010000
.......................................................................................................TTGGTGTTACTTCTTACAGTGATT......................................................................................................................................................................................................2411.001000010
.......................................................................................................TTGGTGTTACTTCTTACAGTGC........................................................................................................................................................................................................2211.001001000
........................................................GCTGTAAATTGTAATCATCAA........................................................................................................................................................................................................................................................2111.001000100
droGri2
CGAACTT---------------G---AA--------TGACGT-------CACGCCCGCTGTAATATGTAATCATCAAAGCGTG-TAT-----TTT--ACTCGCTTGGTGTTACTTCTTACAGTGAGTGCGAC---GGCCACA-------------CGTCCAGC-GGAGGAGAGTGAA-------------------------------------TCTAGCGCAGAGAATTCAAACA-----GA----------------------------------------------GAT--------------------------AGAGTGTSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
.......................................................................................................TTGGTGTTACTTCTTACAGTGA........................................................................................................................................................................................................22111.0011110
.........................................................................................................GGTGTTACTTCTTACAGTGA........................................................................................................................................................................................................2011.00110
.......................................................................................................TTGGTGTTACTTCTTACAGTGT........................................................................................................................................................................................................2211.00101
......................................................................................................CTTGGTGTTACTTCTTACAGTGA........................................................................................................................................................................................................2311.00110
........................................................................................................TGGTGTTACTTCTTACAGTGA........................................................................................................................................................................................................2111.00110
droAna3
CGTTGTTTCGCTGCATGTGAGAA---AA--------TTCCGTGGCTGGCATCGTTCACTGTAAATTGTAACCATCAAAGCGTT-TTTT----ATCAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGAGCC---AGCTGGA--GC------ACATATT-------A----------------------AA-------------------------------AAAAAAATAAATAA-----AAAATAAAAATGTCTTTGTAAAGCCCTTTAAAAAACGCGAAAATTTTT---GGAATTTAAATTTGAAC-ATTTGAGTCTGATTTSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.......................................................................................................TTGGTGTTACTTCTTACAGTGA........................................................................................................................................................................................................221223.00223187812104101
........................................................ACTGTAAATTGTAACCATCAAAGC.....................................................................................................................................................................................................................................................24129.002911501012
.......................................................................................................TTGGTGTTACTTCTTACAGTG.........................................................................................................................................................................................................21126.00261311119
........................................................ACTGTAAATTGTAACCATCAAAG......................................................................................................................................................................................................................................................2316.006010005
........................................................................................................TGGTGTTACTTCTTACAGTGA........................................................................................................................................................................................................2115.005400001
........................................................ACTGTAAATTGTAACCATCA.........................................................................................................................................................................................................................................................2014.004100003
.......................................................................................................TTGGTGTTACTTCTTACAGTGAA.......................................................................................................................................................................................................2313.003120000
......................................................................................................CTTGGTGTTACTTCTTACAGTGA........................................................................................................................................................................................................2313.003030000
.......................................................................................................TTGGTGTTACTTCTTACAGTGAAA......................................................................................................................................................................................................2413.003020001
........................................................ACTGTAAATTGTAACCATCAAA.......................................................................................................................................................................................................................................................2213.003000003
......................................................................................................CTTGGTGTTACTTCTTACAGTG.........................................................................................................................................................................................................2213.003001101
.......................................................................................................TTGGTGTTACTTCTTACAGTGC........................................................................................................................................................................................................2212.002011000
................................................................................GTT-TTTT----ATCAGAGCCGC..............................................................................................................................................................................................................................1812.002020000
.......................................................................................................TTGGTGTTACTTCTTACAGT..........................................................................................................................................................................................................2012.002000101
......................................................................................................CTTGGTGTTACTTCTTACAGTGT........................................................................................................................................................................................................2311.001000001
........................................................ACTGTAAATTGTAACCATCAA........................................................................................................................................................................................................................................................2111.001000001
........................................................ACTGTAAATTGTAACCATCAAAGT.....................................................................................................................................................................................................................................................2411.001000001
.......................................................................................................TTGGTGTTACTTCTTACAGTA.........................................................................................................................................................................................................2111.001001000
.......................................................................................................TTGGTGTTACTTCTTACAGTGT........................................................................................................................................................................................................2211.001000001
.......................................................................................................TTGGTGTTACTTCTTACAG...........................................................................................................................................................................................................1911.001100000
........................................................ACTGTAAATTGTAACCATCAAAGCT....................................................................................................................................................................................................................................................2511.001000001
droBip1
CGTTGTTTCGCTGCATGTGAGAA---AA--------TTCCGTGGCTGGCATCGTTCACTGTAAATTGTAACCATCAAAGCGTT-TTTT----ATCAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGAGCC---AGCTGGA--GC------ACACATTTAACTGAAAAAG------ACTAAAA------------------------------CCTA----------------AAAAAAAAAAGCAAGAATGTATTT--AAAACCCTTTA-AAAACGCGAAAATTTTCAATTGAAATT--------------TGAATCTGATTTSizeHit CountTotal NormTotal
No Reads
droKik1
CGTTC--------------AGAGCGAAA--------TTCCTTGGCTGGCAGCGCACACTGTAAATTGTAATCATCAAAGCGTT-TTT-----CTCAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGCGCC---AGTACACGTAC------ACA---------CGGCAAGAAAGAA-------------------------------------CCTT----------------AA-----AAAGT------ATATTTGAAA--------AAAAAATATAAAAATTAAA---GGAAATTCGAT--GAAGGATTT---TCTGATTTSizeHit CountTotal NormTotal
No Reads
droFic1
CGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCATCGCCCGCTGTAAATTGTAATCATCAAAGCGTT-TT------CTCAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCC---AGTCCGT--AC------ACA-----------------------------AA----G-------------------------------AGAAAACCCCATAT-----GA----------------------------------------------AAC--------------------------CCCCTTTSizeHit CountTotal NormTotal
No Reads
droEle1
CGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCATCGCTCGCTGTAAATTGTAATCATCAAAGCGTT-TTT-----CTCAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
CGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCATCGTTCGCTGTAAATTGTAATCATCAAAGCGTT-TTT-----TTCAGAACCGCTTGGTGTTACTTCTTACAGTGAGTGTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
CGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCATCGCCCGCTGTAAATTGTAATCATCAAAGCGTT-TTT-----CTCAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
CGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCATCGCTCGCTGTAAATTGTAATCATCAAAGCGTT-TT------CTCAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
CGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCATCGCTCGCTGTAAATTGTAATCATCAAAGCGTT-TT------CTCAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCC---AGTCCGT--AC------ACAC-------------------------------A------------------------------------GAAAGAAAATAT-----GA----------------------------------------------A-----------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
CGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCATCGCTCGCTGTAAATTGTAATCATCAAAGCGTT-TT------CTCAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.......................................................................................................TTGGTGTTACTTCTTACAGTGA........................................................................................................................................................................................................2214185.004185000018000018591010108000028000015117103000000000000000010100000111140000000000000000000012591111028107276724181817751021516358410644051520852239299504902744169148243590000000000000000000000000000000000009313201562011913261321168625930000004070000000000000000000000000001000016032402610010000221703140000280300011650030000071010000000001003001111363714011100100600330100001200004000284319100075120
........................................................GCTGTAAATTGTAATCATCA.........................................................................................................................................................................................................................................................201359.003590000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000050000011031810000000000000000000000000000000000000152801600317020131031500000180000000000000000000000000000000000000000000000000003000023020000000000000000000000000000000000252244380000000000001000000000000000000100010001000
........................................................GCTGTAAATTGTAATCATCAAAGC.....................................................................................................................................................................................................................................................241280.0028000001000000000000000000000000018210100000000000000000000000000000000000000000000000000000000010060010001600000100101000130101220518300000000000000000000000000000000000012210130042601801823710000009000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000100022220300000000000000000000000000001100000000000
........................................................GCTGTAAATTGTAATCATCAAAG......................................................................................................................................................................................................................................................231229.002290000000000000000000000000000118140000000000000000000000000000000000000000000000000000000000010000000001000000000000001000022704293000000000000000000010000000000000000111204006151813023860000014000000000000000000000000000000000000000000000000000200003101000001000000000000000000000000000016150201000000000000000000000000000000000000000
........................................................GCTGTAAATTGTAATCATCAA........................................................................................................................................................................................................................................................211174.0017400000000000000000000000000010000000000000000000000000000000000000000000000000000000000000001000000000250000000000000020000000021730000000000000000000000000000000000001110013016806013020000000150000000000000000000000000000000000000000000000000000000010010000030000000000000000000000000000184100010000000000000000000000000000000000000000
.......................................................................................................TTGGTGTTACTTCTTACAGTG.........................................................................................................................................................................................................211163.001630000000000000000001000050000000000000100000000000000000013100000000000000000000010000006000201830220130200020001020300200000102022000000000000000000000000000000000000130000230105054000009000000000000000000000000000000000000000000000003100000000000000100001000009000000000000000000012010300000000000000000002000000000700100004520
........................................................GCTGTAAATTGTAATCATCAAA.......................................................................................................................................................................................................................................................22178.00780000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100020210000000000000000000000000000000000009907001515170140000002000000000000000000000000000000000000000000000000000000001000000001000000000000000000000000000013310000000000000000000000000000000000000000000
........................................................GCTGTAAATTGTAATCATC..........................................................................................................................................................................................................................................................19173.007300000000000000000000000000003110000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000131100000000000000000000000000000000000022000000113803100000000000000000000000000000000000000000000000000000000030000010000000000000000000000000000000000009310110000000000000000000000000000000200000000000
.......................................................................................................TTGGTGTTACTTCTTACAGTGT........................................................................................................................................................................................................22146.0046000000000000000000000000000000000000000000000000000000000000000000000000000000002000010000090010001000000000000000000100000001052000000000000000000000000000000000000010100020000000000001000000000000000000000000000000000000000000000001000100001000000000001000001000000000000010100000010100000000100000000001000000000400000001110
.......................................................................................................TTGGTGTTACTTCTTACAGTGC........................................................................................................................................................................................................22134.0034000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000030000000000000000000003800000104183000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................TTGGTGTTACTTCTTACAGTGAA.......................................................................................................................................................................................................23128.0028000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010130010008000000001000000000000000000000000000000000000000000000000000000010000210101000000002000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000010000000000000000000000000000000200000000000
......................................................................................................CTTGGTGTTACTTCTTACAGTGA........................................................................................................................................................................................................23126.0026000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000001100000000000000000001000500000000000000000000000000000000000000000010100010201020000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020100300000000001000000000000000000000000000100
........................................................GCTGTAAATTGTAATCAT...........................................................................................................................................................................................................................................................18116.0016000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000112000000000000000000000000000000000000020100000102100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000130000000000000000000000000000000000000000000
.......................................................................................................TTGGTGTTACTTCTTACAGTGAT.......................................................................................................................................................................................................23110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000010000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000001000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000200
...........................................................................................................TGTTACTTCTTACAGTGA........................................................................................................................................................................................................1819.009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000010100000001000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................TGGTGTTACTTCTTACAGTGA........................................................................................................................................................................................................2118.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000010000000000000000000000000001011000000000000000000000000000000000000110000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................TTGGTGTTACTTCTTACAGTGG........................................................................................................................................................................................................2218.008000000000000000000000001000000000000000000000000000000000000000000000000000000001000000000010000000000000000000010000100000000000000000000000000000000000000000000000100000000000010000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................TTGGTGTTACTTCTTACAGTGAG.......................................................................................................................................................................................................2315.005000000000000000000000000000000000000000000000000000000003110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................GCTGTAAATTGTAATCATCAAAGA.....................................................................................................................................................................................................................................................2415.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010110020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................TTGGTGTTACTTCTTACA............................................................................................................................................................................................................1815.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000001000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................CTTGGTGTTACTTCTTACAGTGT........................................................................................................................................................................................................2314.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000010000000000000000
........................................................GCTGTAAATTGTAATCATCAAAGG.....................................................................................................................................................................................................................................................2414.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010101010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................TTGGTGTTACTTCTTACAGT..........................................................................................................................................................................................................2014.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000100000000010
........................................................GCTGTAAATTGTAATCATCAAAGCG....................................................................................................................................................................................................................................................2514.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000
droSim2
CGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCATCGCTCGCTGTAAATTGTAATCATCAAAGCGTT-TT------CTCAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
.......................................................................................................TTGGTGTTACTTCTTACAGTGA........................................................................................................................................................................................................221285.0028552062700001813013300000
........................................................GCTGTAAATTGTAATCATCAAAGC.....................................................................................................................................................................................................................................................24196.00966113300000010000000
........................................................GCTGTAAATTGTAATCATCAAAG......................................................................................................................................................................................................................................................23190.00907611300000000000000
.......................................................................................................TTGGTGTTACTTCTTACAGTGG........................................................................................................................................................................................................22126.0026901600000000100000
....................................TTCCGTGGCTGGCATCGCTC.............................................................................................................................................................................................................................................................................20116.0016160000000000000000
........................................................GCTGTAAATTGTAATCATC..........................................................................................................................................................................................................................................................19116.0016160000000000000000
.......................................................................................................TTGGTGTTACTTCTTACAGTG.........................................................................................................................................................................................................2115.00500000000000500000
...........................A--------TTCCGTGGCTGGCATCGCTC.............................................................................................................................................................................................................................................................................2114.00430100000000000000
...........................................................................................................TGTTACTTCTTACAGTGA........................................................................................................................................................................................................1812.00200000000110000000
.......................................................................................................TTGGTGTTACTTCTTACAG...........................................................................................................................................................................................................1912.00210100000000000000
........................................................GCTGTAAATTGTAATCATCAAAGA.....................................................................................................................................................................................................................................................2411.00100000000010000000
.......................................................................................................TTGGTGTTACTTCTTACAGTGAA.......................................................................................................................................................................................................2311.00100100000000000000
........................................................GCTGTAAATTGTAATCATCAAA.......................................................................................................................................................................................................................................................2211.00100000000010000000
..........................AA--------TTCCGTGGCTGGCATCGCTC.............................................................................................................................................................................................................................................................................2211.00110000000000000000
droSec2
CGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCATCGCTCGCTGTAAATTGTAATCATCAAAGCGTT-TT------CTCAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
.......................................................................................................TTGGTGTTACTTCTTACAGTGA........................................................................................................................................................................................................221177.001776012645
........................................................GCTGTAAATTGTAATCATCA.........................................................................................................................................................................................................................................................20128.002811125
........................................................GCTGTAAATTGTAATCATCAA........................................................................................................................................................................................................................................................21112.001200012
........................................................GCTGTAAATTGTAATCATCAAA.......................................................................................................................................................................................................................................................2217.0070007
.......................................................................................................TTGGTGTTACTTCTTACAGTG.........................................................................................................................................................................................................2116.0060051
........................................................GCTGTAAATTGTAATCATC..........................................................................................................................................................................................................................................................1915.0050005
......................................................................................................CTTGGTGTTACTTCTTACAGTGA........................................................................................................................................................................................................2315.0050050
........................................................GCTGTAAATTGTAATCATCAAAGC.....................................................................................................................................................................................................................................................2415.0051013
........................................................GCTGTAAATTGTAATCATCAAAG......................................................................................................................................................................................................................................................2313.0031002
.......................................................................................................TTGGTGTTACTTCTTACAGTGT........................................................................................................................................................................................................2212.0020020
....................................TTCCGTGGCTGGCATCGCTC.............................................................................................................................................................................................................................................................................2011.0010010
.......................................................CGCTGTAAATTGTAATCATCAA........................................................................................................................................................................................................................................................2211.0010001
........................................................GCTGTAAATTGTAATCATCAAAGCG....................................................................................................................................................................................................................................................2511.0010010
......................................................................................................CTTGGTGTTACTTCTTACAGTG.........................................................................................................................................................................................................2211.0010010
........................................................................................................TGGTGTTACTTCTTACAGTGA........................................................................................................................................................................................................2111.0011000
.......................................................................................................TTGGTGTTACTTCTTACAGT..........................................................................................................................................................................................................2011.0010001
.......................................................................................................TTGGTGTTACTTCTTACAGTGG........................................................................................................................................................................................................2211.0010010
..........................................................................CAAAGCGTT-TT------CTCAGGC..................................................................................................................................................................................................................................1880.1311000
droYak3
CGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCATCGCTCGCTGTAAATTGTAATCATCAAAGCGTT-TT------CTCAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
.......................................................................................................TTGGTGTTACTTCTTACAGTGA........................................................................................................................................................................................................221227.002271111138630220000
........................................................GCTGTAAATTGTAATCATCAAAGC.....................................................................................................................................................................................................................................................24169.00692813901000000
........................................................GCTGTAAATTGTAATCATCAAAG......................................................................................................................................................................................................................................................23136.0036292410000000
........................................................GCTGTAAATTGTAATCATCA.........................................................................................................................................................................................................................................................20110.001001005400000
....................................TTCCGTGGCTGGCATCGCTC.............................................................................................................................................................................................................................................................................20110.001090100000000
...........................A--------TTCCGTGGCTGGCATCGCTC.............................................................................................................................................................................................................................................................................2116.00650100000000
.......................................................................................................TTGGTGTTACTTCTTACAG...........................................................................................................................................................................................................1916.00600600000000
........................................................GCTGTAAATTGTAATCATC..........................................................................................................................................................................................................................................................1914.00431000000000
.......................................................................................................TTGGTGTTACTTCTTACAGTG.........................................................................................................................................................................................................2114.00400400000000
.......................................................................................................TTGGTGTTACTTCTTACAGTGAA.......................................................................................................................................................................................................2314.00411110000000
........................................................................................................TGGTGTTACTTCTTACAGTGA........................................................................................................................................................................................................2114.00404000000000
......................................................................................................CTTGGTGTTACTTCTTACAGTGA........................................................................................................................................................................................................2313.00300210000000
.......................................................................................................TTGGTGTTACTTCTTACAGTGG........................................................................................................................................................................................................2212.00210010000000
........................................................GCTGTAAATTGTAATCATCAAAGCG....................................................................................................................................................................................................................................................2512.00210010000000
........................................................GCTGTAAATTGTAATCATCAA........................................................................................................................................................................................................................................................2111.00100000100000
.....................................TCCGTGGCTGGCATCGCTC.............................................................................................................................................................................................................................................................................1911.00110000000000
........................................................................................................TGGTGTTACTTCTTACAGTG.........................................................................................................................................................................................................2011.00100100000000
droEre2
CGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCATCGCCCGCTGTAAATTGTAATCATCAAAGCGTT-TT------CTCAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.......................................................................................................TTGGTGTTACTTCTTACAGTGA........................................................................................................................................................................................................221231.0023139451661790
........................................................GCTGTAAATTGTAATCATCA.........................................................................................................................................................................................................................................................20145.004500601380
........................................................GCTGTAAATTGTAATCATCAAAGC.....................................................................................................................................................................................................................................................24129.0029112011140
........................................................GCTGTAAATTGTAATCATCAAAG......................................................................................................................................................................................................................................................23126.002601210220
........................................................GCTGTAAATTGTAATCATCAA........................................................................................................................................................................................................................................................21122.002200000220
........................................................GCTGTAAATTGTAATCATCAAA.......................................................................................................................................................................................................................................................22122.002210000210
.......................................................................................................TTGGTGTTACTTCTTACAGTG.........................................................................................................................................................................................................21115.00152405040
........................................................................................................TGGTGTTACTTCTTACAGTGA........................................................................................................................................................................................................2115.0055000000
......................................................................................................CTTGGTGTTACTTCTTACAGTGA........................................................................................................................................................................................................2315.0050400010
.......................................................................................................TTGGTGTTACTTCTTACAGTGT........................................................................................................................................................................................................2212.0020011000
.......................................................................................................TTGGTGTTACTTCTTACAGTGAA.......................................................................................................................................................................................................2312.0020000020
.......................................................................................................TTGGTGTTACTTCTTACAGT..........................................................................................................................................................................................................2012.0020000020
.........................................................CTGTAAATTGTAATCATCAAAG......................................................................................................................................................................................................................................................2212.0022000000
........................................................GCTGTAAATTGTAATCATCAAAGCG....................................................................................................................................................................................................................................................2512.0020000020
.......................................................................................................TTGGTGTTACTTCTTACAGTGC........................................................................................................................................................................................................2212.0020011000
........................................................GCTGTAAATTGTAATCAT...........................................................................................................................................................................................................................................................1812.0020000020
........................................................GCTGTAAATTGTAATCATCAAAA......................................................................................................................................................................................................................................................2311.0010000010
.......................................................................................................TTGGTGTTACTTCTTACAGTGTA.......................................................................................................................................................................................................2311.0010001000
.......................................................CGCTGTAAATTGTAATCATCA.........................................................................................................................................................................................................................................................2111.0010000010
........................................................GCTGTAAATTGTAATCATC..........................................................................................................................................................................................................................................................1911.0010000010
........................................................GCTGTAAATTGTAATCATCG.........................................................................................................................................................................................................................................................2011.0010000010
.......................................................CGCTGTAAATTGTAATCATCAAAG......................................................................................................................................................................................................................................................2411.0010000010
....................................TTCCGTGGCTGGCATCGCCC.............................................................................................................................................................................................................................................................................2011.0011000000
.......................................................................................................TTGGTGTTACTTCTTACAGTGAC.......................................................................................................................................................................................................2311.0010100000
..........................AA--------TTCCGTGGCTGGCATCGCCC.............................................................................................................................................................................................................................................................................2211.0010000010
......................................................................................................CTTGGTGTTACTTCTTACAGTG.........................................................................................................................................................................................................2211.0011000000
...........................................................................................................TGTTACTTCTTACAGTGA........................................................................................................................................................................................................1811.0010001000

Generated: 10/20/2015 at 10:16 PM