dpe_9

ATCCCTGCAAAAGAAAAACAACCCACCAGAATATACTGTCCACAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGGAGTTGATATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGTGCGGCATGAGCATCTAACCAAAAAAAAATATTAATAATAATAAG *********************************.((((((((.(((.((((((((((.((((.((((((((.......(((((....))))).)))))))))))).)))))))))))))..)))).))))..**********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V057 head	V050 head	V111 male body	M042 female body	M021 embryo	V042 embryo
.................................................................................................TGAAACCGTCCAAAACTGAGGC...................................................	22	0	1	21405.00	21405	10408	6611	3070	450	819	47
.................................................................................................TGAAACCGTCCAAAACTGAGG....................................................	21	0	1	19541.00	19541	9008	5873	3954	665	29	12
.................................................................................................TGAAACCGTCCAAAACTGAG.....................................................	20	0	1	1009.00	1009	514	309	140	44	1	1
.................................................................................................TGAAACCGTCCAAAACTGAGGCA..................................................	23	1	1	398.00	398	223	136	26	13	0	0
.................................................................................................TGAAACCGTCCAAAACTGAGGCT..................................................	23	1	1	261.00	261	151	57	33	10	10	0
.................................................................................................TGAAACCGTCCAAAACTGAGGT...................................................	22	1	1	161.00	161	92	38	27	3	1	0
.................................................................................................TGAAACCGGCCAAAACTGAGGC...................................................	22	1	1	144.00	144	118	10	1	15	0	0
.................................................................................................TGAAACCGGCCAAAACTGAGG....................................................	21	1	1	139.00	139	100	6	0	33	0	0
.................................................................................................TGAAACCGTCCATAACTGAGG....................................................	21	1	1	112.00	112	95	17	0	0	0	0
.................................................................................................TGAAACCGTCCAAAACTGAGGCC..................................................	23	0	1	101.00	101	46	26	18	4	7	0
.................................................................................................TGAAACCGTCCATAACTGAGGC...................................................	22	1	1	101.00	101	84	16	1	0	0	0
.................................................................................................TGAAACCGCCCAAAACTGAGGC...................................................	22	1	1	95.00	95	74	14	4	2	1	0
.................................................................................................TGAAACCGTCCAAAACTGAGGA...................................................	22	1	1	86.00	86	35	35	12	3	1	0
.................................................................................................TGAAACCGTCCAAAACTGAGCC...................................................	22	1	1	78.00	78	53	19	6	0	0	0
.................................................................................................TGAAACCGTCCAAAACTGCGG....................................................	21	1	1	75.00	75	47	26	2	0	0	0
.................................................................................................TGAAACCGTCCAACACTGAGGC...................................................	22	1	1	71.00	71	58	13	0	0	0	0
.................................................................................................TGAAACCGTCCAAACCTGAGG....................................................	21	1	1	70.00	70	40	30	0	0	0	0
.................................................................................................TGAAACCGTCCAAAACTGA......................................................	19	0	1	68.00	68	38	11	1	4	14	0
..................................................................................................GAAACCGTCCAAAACTGAGGC...................................................	21	0	1	67.00	67	9	10	4	40	4	0
.................................................................................................TGAAACCGTCCACAACTGAGG....................................................	21	1	1	64.00	64	49	15	0	0	0	0
.................................................................................................TGAAACCGTCCACAACTGAGGC...................................................	22	1	1	63.00	63	43	17	2	0	1	0
.................................................................................................TGAAACCGTCCAAAACTGAGTC...................................................	22	1	1	61.00	61	45	14	2	0	0	0
..................................................................................................GAAACCGTCCAAAACTGAGG....................................................	20	0	1	61.00	61	6	10	3	42	0	0
.................................................................................................TGAAACCGTCCAACACTGAGG....................................................	21	1	1	61.00	61	50	11	0	0	0	0
.................................................................................................TGAAACCGTCCAAAACTGACGC...................................................	22	1	1	58.00	58	41	14	2	1	0	0
.................................................................................................TGAAACCGTCCAAAACTCAGG....................................................	21	1	1	57.00	57	41	14	2	0	0	0
.................................................................................................TGAAACCGTCCAAAACTGAGGCTT.................................................	24	2	1	56.00	56	26	20	7	1	2	0
.................................................................................................TGAAACCGTCCAAACCTGAGGC...................................................	22	1	1	53.00	53	34	18	1	0	0	0
.................................................................................................TGAAACCGTCCAAAACCGAGGC...................................................	22	1	1	52.00	52	36	15	1	0	0	0
.................................................................................................TGAAACCGACCAAAACTGAGGC...................................................	22	1	1	51.00	51	29	12	0	10	0	0
.................................................................................................TGAAACCGACCAAAACTGAGG....................................................	21	1	1	51.00	51	33	4	0	14	0	0
.................................................................................................TGAAACCGTCCAAAACTCAGGC...................................................	22	1	1	50.00	50	30	19	1	0	0	0
.................................................................................................TGAAACCGTCCAAAACTGACG....................................................	21	1	1	49.00	49	33	15	1	0	0	0
.................................................................................................TGAAACCGTCCAAAGCTGAGGC...................................................	22	1	1	47.00	47	26	17	3	0	1	0
.................................................................................................TGAAACCGTCCGAAACTGAGGC...................................................	22	1	1	45.00	45	37	5	3	0	0	0
.................................................................................................AGAAACCGTCCAAAACTGAGGC...................................................	22	1	1	43.00	43	25	9	4	1	2	2
.................................................................................................TGAAAGCGTCCAAAACTGAGGC...................................................	22	1	1	42.00	42	21	21	0	0	0	0
.................................................................................................TGAAACAGTCCAAAACTGAGGC...................................................	22	1	1	41.00	41	36	5	0	0	0	0
.................................................................................................TGAAACCGCCCAAAACTGAGG....................................................	21	1	1	41.00	41	22	11	3	5	0	0
.................................................................................................TGAAACCGTCCAAAACCGAGG....................................................	21	1	1	41.00	41	27	13	0	1	0	0
.................................................................................................TGAAACCGTCCAAAACTGAGT....................................................	21	1	1	40.00	40	24	10	4	1	1	0
.................................................................................................TGAAACAGTCCAAAACTGAGG....................................................	21	1	1	40.00	40	34	4	2	0	0	0
.................................................................................................TGAAACCGTCCAAAGCTGAGG....................................................	21	1	1	40.00	40	23	10	6	1	0	0
.................................................................................................TGAAACCGTCCAGAACTGAGGC...................................................	22	1	1	40.00	40	26	8	2	0	4	0
.................................................................................................TGAAAGCGTCCAAAACTGAGG....................................................	21	1	1	39.00	39	9	30	0	0	0	0
.................................................................................................TGAAACCGTCCAAAACTGCGGC...................................................	22	1	1	38.00	38	29	9	0	0	0	0
.................................................................................................TGAAACCGTCCGAAACTGAGG....................................................	21	1	1	38.00	38	30	7	1	0	0	0
.................................................................................................TGAAACCGTCCAAAAATGAGGC...................................................	22	1	1	36.00	36	30	6	0	0	0	0
.................................................................................................TGAAGCCGTCCAAAACTGAGG....................................................	21	1	1	36.00	36	19	9	6	2	0	0
.................................................................................................TGAAACCGTCCAAAACAGAGGC...................................................	22	1	1	35.00	35	26	8	1	0	0	0
.................................................................................................TGAAACCGTCCAAAACTGAGC....................................................	21	1	1	35.00	35	21	8	6	0	0	0
.................................................................................................TGAAACCGTCCAAGACTGAGG....................................................	21	1	1	35.00	35	20	13	2	0	0	0
.................................................................................................TGAAACCGTCCAAAACTGAGAC...................................................	22	1	1	34.00	34	10	10	1	1	12	0
.................................................................................................TGAAACTGTCCAAAACTGAGGC...................................................	22	1	1	34.00	34	20	14	0	0	0	0
.................................................................................................CGAAACCGTCCAAAACTGAGGC...................................................	22	1	1	33.00	33	20	3	3	0	7	0
................................................................................................CTGAAACCGTCCAAAACTGAGGC...................................................	23	1	1	33.00	33	23	5	5	0	0	0
.................................................................................................TGAAACCGTCCAAGACTGAGGC...................................................	22	1	1	33.00	33	23	5	5	0	0	0
.................................................................................................TGAAGCCGTCCAAAACTGAGGC...................................................	22	1	1	33.00	33	20	9	1	1	2	0
.................................................................................................TGAAACCGTCCAAAACGGAGG....................................................	21	1	1	33.00	33	27	6	0	0	0	0
.................................................................................................AGAAACCGTCCAAAACTGAGG....................................................	21	1	1	33.00	33	25	3	2	1	2	0
.................................................................................................TGAAACCGTCCAAAACTAAGG....................................................	21	1	1	33.00	33	21	8	4	0	0	0
.................................................................................................TGAAAACGTCCAAAACTGAGGC...................................................	22	1	1	32.00	32	21	11	0	0	0	0
.................................................................................................TGAAACCGTCCAAAACGGAGGC...................................................	22	1	1	32.00	32	27	5	0	0	0	0
.................................................................................................TGAAACTGTCCAAAACTGAGG....................................................	21	1	1	31.00	31	17	13	1	0	0	0
.................................................................................................TGAAACCGTCCAAAACTGATGC...................................................	22	1	1	31.00	31	24	6	0	1	0	0
.................................................................................................TGGAACCGTCCAAAACTGAGG....................................................	21	1	1	31.00	31	24	3	3	1	0	0
.................................................................................................TGAAACCGTCCAAAACAGAGG....................................................	21	1	1	30.00	30	23	7	0	0	0	0
.................................................................................................TGAAACCGTCCATAACTGAGTC...................................................	22	2	1	29.00	29	25	4	0	0	0	0
.................................................................................................TGAAACCGTCAAAAACTGAGGC...................................................	22	1	1	29.00	29	21	6	2	0	0	0
.................................................................................................TGAAACCGTCTAAAACTGAGG....................................................	21	1	1	29.00	29	9	17	3	0	0	0
.................................................................................................TGAAACCGTCCAAAACTGGGGC...................................................	22	1	1	28.00	28	17	7	4	0	0	0
.................................................................................................TGAAACCGTCCCAAACTGAGG....................................................	21	1	1	28.00	28	19	9	0	0	0	0
.................................................................................................TGAAACCGTCCAGAACTGAGG....................................................	21	1	1	28.00	28	23	3	2	0	0	0
.................................................................................................TGAAACCGTCTAAAACTGAGGC...................................................	22	1	1	27.00	27	11	15	1	0	0	0
.................................................................................................TGAAACCGTCCCAAACTGAGGC...................................................	22	1	1	27.00	27	19	7	1	0	0	0
.................................................................................................GGAAACCGTCCAAAACTGAGGC...................................................	22	1	1	27.00	27	24	3	0	0	0	0
..................................................CTTAGTTTTCGACGTGTTTTGGT.................................................................................................	23	0	1	26.00	26	6	9	10	1	0	0
................................................................................................CTGAAACCGTCCAAAACTGAGG....................................................	22	1	1	26.00	26	14	8	3	1	0	0
.................................................................................................TGAAACCGTCAAAAACTGAGG....................................................	21	1	1	26.00	26	21	4	1	0	0	0
.................................................................................................TGAAACCGTCCAAAACTGGGG....................................................	21	1	1	26.00	26	24	1	1	0	0	0
.................................................................................................TGAAACCATCCAAAACTGAGG....................................................	21	1	1	25.00	25	11	9	5	0	0	0
.................................................................................................TGGAACCGTCCAAAACTGAGGC...................................................	22	1	1	25.00	25	14	10	1	0	0	0
.................................................................................................TGAAACCGTCCAAAACTGATG....................................................	21	1	1	24.00	24	18	4	2	0	0	0
.................................................................................................CGAAACCGTCCAAAACTGAGG....................................................	21	1	1	24.00	24	20	1	3	0	0	0
.................................................................................................TGAAAACGTCCAAAACTGAGG....................................................	21	1	1	24.00	24	15	9	0	0	0	0
.................................................................................................TGAAACCATCCAAAACTGAGGC...................................................	22	1	1	24.00	24	13	10	1	0	0	0
.................................................................................................TGAAATCGTCCAAAACTGAGGC...................................................	22	1	1	23.00	23	7	16	0	0	0	0
.................................................................................................TGAAACCGTCCAAAACTGAGA....................................................	21	1	1	23.00	23	12	7	3	1	0	0
.................................................................................................TGAAATCGTCCAAAACTGAGG....................................................	21	1	1	23.00	23	7	15	1	0	0	0
.................................................................................................GGAAACCGTCCAAAACTGAGG....................................................	21	1	1	22.00	22	19	2	0	1	0	0
.................................................................................................TGAAACCGTCCAATACTGAGG....................................................	21	1	1	22.00	22	19	3	0	0	0	0
.................................................................................................TGAGACCGTCCAAAACTGAGGC...................................................	22	1	1	21.00	21	17	3	1	0	0	0
.................................................................................................TGAAACCGTCCAAAAATGAGG....................................................	21	1	1	21.00	21	13	6	2	0	0	0
.................................................................................................TGAAACCGTCCAAAACTTAGG....................................................	21	1	1	20.00	20	10	8	2	0	0	0
.................................................................................................TGAAACCGTCCAATACTGAGGC...................................................	22	1	1	20.00	20	16	3	0	0	0	1
.................................................................................................TGAAACCGTCCAAAACTGTGG....................................................	21	1	1	19.00	19	19	0	0	0	0	0
.................................................................................................TGAGACCGTCCAAAACTGAGG....................................................	21	1	1	18.00	18	14	3	1	0	0	0
.................................................................................................TAAAACCGTCCAAAACTGAGGC...................................................	22	1	1	18.00	18	12	1	3	2	0	0
.................................................................................................TAAAACCGTCCAAAACTGAGG....................................................	21	1	1	17.00	17	10	3	3	1	0	0
.................................................................................................TGAAACCGTACAAAACTGAGG....................................................	21	1	1	17.00	17	9	6	2	0	0	0
.................................................................................................TGAAACCGTTCAAAACTGAGGC...................................................	22	1	1	16.00	16	12	2	2	0	0	0
.................................................................................................TGAAAGCGTCCATAACTGAGG....................................................	21	2	1	16.00	16	15	1	0	0	0	0
.................................................................................................TGAAACCGTACAAAACTGAGGC...................................................	22	1	1	16.00	16	13	3	0	0	0	0
.................................................................................................TGAAACCGTCCAAAACTGAGGCCT.................................................	24	1	1	16.00	16	10	4	1	1	0	0
.................................................................................................TGAAACCGGCCAAAACGGAGGC...................................................	22	2	1	16.00	16	14	2	0	0	0	0
.................................................................................................TGAAAGCGTCCATAACTGAGGC...................................................	22	2	1	15.00	15	12	3	0	0	0	0
.................................................................................................TGAAACCGTGCAAAACTGAGGC...................................................	22	1	1	15.00	15	14	1	0	0	0	0
.................................................................................................TGAAACCGTCCAAAACTGAAGC...................................................	22	1	1	14.00	14	6	8	0	0	0	0
.................................................................................................TGAAACCGTCCAAAACTAAGGC...................................................	22	1	1	14.00	14	6	7	0	0	1	0
.................................................................................................TGAAACCGTCCTAAACTGAGG....................................................	21	1	1	14.00	14	13	1	0	0	0	0
.................................................................................................TCAAACCGTCCAAAACTGAGGC...................................................	22	1	1	13.00	13	8	2	1	0	2	0
.................................................................................................TGAAACCGGCCAAAACGGAGG....................................................	21	2	1	13.00	13	12	1	0	0	0	0
.................................................................................................TGAAACCGTTCAAAACTGAGG....................................................	21	1	1	13.00	13	5	3	5	0	0	0
.................................................................................................TGAAACCGTCCAAAACTGAAG....................................................	21	1	1	12.00	12	3	7	2	0	0	0
...................................................................................................AAACCGTCCAAAACTGAGGC...................................................	20	0	1	12.00	12	7	3	0	2	0	0
.................................................................................................TGAAACCCTCCAAAACTGAGGC...................................................	22	1	1	12.00	12	8	4	0	0	0	0
.................................................................................................TGAAACCGTCCAAAACTGTGGC...................................................	22	1	1	12.00	12	9	2	1	0	0	0
.................................................................................................TGAAACCGTCCTAAACTGAGGC...................................................	22	1	1	12.00	12	11	1	0	0	0	0
.................................................................................................TGAAACCGTCCAAATCTGAGG....................................................	21	1	1	11.00	11	11	0	0	0	0	0
.................................................................................................TGACACCGTCCAAAACTGAGGC...................................................	22	1	1	10.00	10	8	1	1	0	0	0
.................................................................................................TGAAACCGTCCAAAACTTAGGC...................................................	22	1	1	10.00	10	6	2	1	0	1	0
.................................................................................................TGAAACCGTCCATAACTGAG.....................................................	20	1	1	10.00	10	8	2	0	0	0	0
.................................................................................................TGAACCCGTCCAAAACTGAGGC...................................................	22	1	1	10.00	10	8	2	0	0	0	0
.................................................................................................TTAAACCGTCCAAAACTGAGGC...................................................	22	1	1	9.00	9	8	1	0	0	0	0
.................................................................................................TGAAACCGTCCATAACTGGGG....................................................	21	2	1	9.00	9	9	0	0	0	0	0
.................................................................................................TGAAACCGGCCAAAACTGAGCC...................................................	22	2	1	9.00	9	6	3	0	0	0	0
.................................................................................................TGACACCGTCCAAAACTGAGG....................................................	21	1	1	9.00	9	7	2	0	0	0	0
.................................................................................................TGAAACCCTCCAAAACTGAGG....................................................	21	1	1	9.00	9	7	1	1	0	0	0
.................................................................................................TGAAACCGTCCAAATCTGAGGC...................................................	22	1	1	9.00	9	8	1	0	0	0	0
.................................................................................................TCAAACCGTCCAAAACTGAGG....................................................	21	1	1	9.00	9	6	1	2	0	0	0
.................................................................................................TGAACCCGTCCAAAACTGAGG....................................................	21	1	1	8.00	8	7	1	0	0	0	0
.................................................................................................TGAAACCGTCCAAAACTGAGGCCA.................................................	24	0	1	8.00	8	7	1	0	0	0	0
.................................................................................................TGAAACCGGCCAAAACTGACGC...................................................	22	2	1	8.00	8	8	0	0	0	0	0
.................................................................................................TGAAACCTTCCAAAACTGAGG....................................................	21	1	1	8.00	8	5	2	1	0	0	0
.................................................................................................TGAAACCGTCCAACACCGACG....................................................	21	3	1	8.00	8	8	0	0	0	0	0
.................................................................................................TGAAACCGTCCAACACCGAGG....................................................	21	2	1	8.00	8	8	0	0	0	0	0
.................................................................................................TTAAACCGTCCAAAACTGAGG....................................................	21	1	1	8.00	8	5	3	0	0	0	0
.................................................................................................AGAAACCGGCCAAAACTGAGG....................................................	21	2	1	8.00	8	8	0	0	0	0	0
.................................................................................................TGAAACCGTCCAAAAGTGAGG....................................................	21	1	1	8.00	8	5	3	0	0	0	0
...................................................................................................AAACCGTCCAAAACTGAGG....................................................	19	0	1	8.00	8	3	1	0	4	0	0
.................................................................................................TGTAACCGTCCAAAACTGAGGC...................................................	22	1	1	8.00	8	7	0	1	0	0	0
.................................................................................................TGAAACCGACCAAAACAGAGGC...................................................	22	2	1	8.00	8	4	4	0	0	0	0
.................................................................................................TGAAACCGTCCAAAATTGAGGC...................................................	22	1	1	7.00	7	6	1	0	0	0	0
.................................................................................................TGAAACCGTGCAAAACTGAGG....................................................	21	1	1	7.00	7	7	0	0	0	0	0
.................................................................................................TGAAACCGGCCAAAACAGAGGC...................................................	22	2	1	7.00	7	7	0	0	0	0	0
.................................................................................................TGAAACCTTCCAAAACTGAGGC...................................................	22	1	1	7.00	7	4	3	0	0	0	0
.................................................................................................TGAAACCGTCCATAACTGAGT....................................................	21	2	1	7.00	7	7	0	0	0	0	0
.................................................................................................TGAAACCGTCCAATACGGAGG....................................................	21	2	1	7.00	7	6	1	0	0	0	0
...............................................................................................TCTGAAACCGTCCAAAACTGAGG....................................................	23	2	1	7.00	7	3	2	1	0	1	0
.................................................................................................TGAAACCGTCCAAAACCGACG....................................................	21	2	1	7.00	7	6	1	0	0	0	0
.................................................................................................TGAAACCGTCCAACACTGACG....................................................	21	2	1	7.00	7	5	2	0	0	0	0
.................................................................................................TGAAACCGTCCAACACCGACGC...................................................	22	3	1	7.00	7	7	0	0	0	0	0
.................................................................................................TGAAACCGTCCATAGCTGAGG....................................................	21	2	1	7.00	7	7	0	0	0	0	0
.................................................................................................TGAAACCGTCCAAAACTGACTC...................................................	22	2	1	6.00	6	4	2	0	0	0	0
.................................................................................................TGAAACCGTCCAAAAATGAG.....................................................	20	1	1	6.00	6	5	1	0	0	0	0
.................................................................................................TGAAACCGTCCGAAAATGAGGC...................................................	22	2	1	6.00	6	6	0	0	0	0	0
.................................................................................................TGAAACCGTCCATAACTGAGGCT..................................................	23	2	1	6.00	6	6	0	0	0	0	0
.................................................................................................TGAAACCGTCCAACACTGACGC...................................................	22	2	1	6.00	6	6	0	0	0	0	0
.................................................................................................TGAAACCGGCCAAAACTGAG.....................................................	20	1	1	6.00	6	3	0	0	3	0	0
.................................................................................................TGAAACCGGCCATAACTGAGG....................................................	21	2	1	6.00	6	5	1	0	0	0	0
.................................................................................................TGAAACCGTCCAAAACTGAGGTT..................................................	23	2	1	6.00	6	6	0	0	0	0	0
.................................................................................................TGAAACCGTCCAAAACTGAGGG...................................................	22	1	1	6.00	6	1	1	0	2	2	0
.................................................................................................TGAAACCGTCCAAAATTGAGG....................................................	21	1	1	6.00	6	3	2	0	1	0	0
.................................................................................................TGAAAGCGTCCATAACTGGGGC...................................................	22	3	1	6.00	6	6	0	0	0	0	0
.................................................................................................TGAAACCGTCCAGAAATGAGG....................................................	21	2	1	6.00	6	6	0	0	0	0	0
.................................................................................................TGAAACCGGCCAGAACTGAGG....................................................	21	2	1	6.00	6	6	0	0	0	0	0
.................................................................................................TGAAACCGTCCAAAACTGAGGCG..................................................	23	1	1	6.00	6	2	4	0	0	0	0
.................................................................................................TGAAACCGGCCATAACTGAGGC...................................................	22	2	1	6.00	6	3	3	0	0	0	0
.................................................................................................TGAAACCGTCCAACACCGAGGC...................................................	22	2	1	6.00	6	3	3	0	0	0	0
.................................................................................................TGTAACCGTCCAAAACTGAGG....................................................	21	1	1	6.00	6	4	1	1	0	0	0
.................................................................................................TGAAACCGTCCACAACTGCGGC...................................................	22	2	1	5.00	5	4	1	0	0	0	0
.................................................................................................CGAAACCGTCCAAAACTGACGC...................................................	22	2	1	5.00	5	3	2	0	0	0	0
.................................................................................................TGAAACTGTCCGAAACTGAGGC...................................................	22	2	1	5.00	5	5	0	0	0	0	0
.................................................................................................TGAAACCGTCCAAAACTCAG.....................................................	20	1	1	5.00	5	4	1	0	0	0	0
...............................................................................................TCTGAAACCGTCCAAAACTGAGGC...................................................	24	2	1	5.00	5	0	4	1	0	0	0
.................................................................................................TGAAACCGTCCGGAACTGAGGC...................................................	22	2	1	5.00	5	5	0	0	0	0	0
.................................................................................................TGAAACCGTCCAAAACTGCTG....................................................	21	2	1	5.00	5	4	1	0	0	0	0
.................................................................................................TGAAACCGTCAAAAACAGAGGC...................................................	22	2	1	5.00	5	4	1	0	0	0	0
.................................................................................................TGAAAGCGTCCATAACTGGGG....................................................	21	3	1	5.00	5	5	0	0	0	0	0
.................................................................................................AGAAACCGGCCAAAACTGAGGC...................................................	22	2	1	5.00	5	5	0	0	0	0	0
.................................................................................................TGAAACCGTCCAACACTCAGGC...................................................	22	2	1	5.00	5	4	1	0	0	0	0
.................................................................................................TGAAACCGTCCACAACTGAGGCT..................................................	23	2	1	5.00	5	4	1	0	0	0	0
.................................................................................................TGAAACCGGCCAAAACAGAGG....................................................	21	2	1	5.00	5	5	0	0	0	0	0
.................................................................................................TGGAACCGGCCAAAACTGAGG....................................................	21	2	1	5.00	5	5	0	0	0	0	0
.................................................................................................TGAAACCGGCCAAGACTGAGGC...................................................	22	2	1	5.00	5	5	0	0	0	0	0
.................................................................................................TGAAACAGCCCAAAACTGAGGC...................................................	22	2	1	5.00	5	4	1	0	0	0	0
.................................................................................................TGAAACAGTCCAAATCTGAGGC...................................................	22	2	1	5.00	5	5	0	0	0	0	0
.................................................................................................AGAAACCGACCAAAACTGAGGC...................................................	22	2	1	5.00	5	5	0	0	0	0	0
.................................................................................................TGAAACCGTCCAAAACTGAGGCTG.................................................	24	2	1	5.00	5	4	1	0	0	0	0
.................................................................................................TGAAACCGTCCAAAAAAGAGGC...................................................	22	2	1	5.00	5	5	0	0	0	0	0
.................................................................................................TGAAACCGTCCACACCTGAGG....................................................	21	2	1	5.00	5	3	2	0	0	0	0
.................................................................................................TGAAACCGTCCAAAAGTGAGGC...................................................	22	1	1	5.00	5	5	0	0	0	0	0
.................................................................................................TGCAACCGTCCAAAACTGAGG....................................................	21	1	1	5.00	5	4	1	0	0	0	0
.................................................................................................TGAAAACGTCCAAAACTGAGCC...................................................	22	2	1	5.00	5	4	1	0	0	0	0
.................................................................................................TGAAACCGCCCAAAACGGAGGC...................................................	22	2	1	5.00	5	4	1	0	0	0	0
.................................................................................................TGAAACCGTCAGAAACTGAGGC...................................................	22	2	1	4.00	4	3	1	0	0	0	0
..................................................................................................TGAACCGTCCAAAACTGAGGC...................................................	21	2	1	4.00	4	1	1	2	0	0	0
.................................................................................................AGAAACCGCCCAAAACTGAGGC...................................................	22	2	1	4.00	4	3	1	0	0	0	0
.................................................................................................TGAAACCGTCCAACACTGAG.....................................................	20	1	1	4.00	4	3	1	0	0	0	0
.................................................................................................TGAAACCGTCGAAAACTGAGG....................................................	21	1	1	4.00	4	4	0	0	0	0	0
.................................................................................................TGAAACCGTCCAAAACTGAGGCTTT................................................	25	3	1	4.00	4	4	0	0	0	0	0
.................................................................................................TGAAACCGTCCATAACTGAGCC...................................................	22	2	1	4.00	4	4	0	0	0	0	0
.................................................................................................TGAAACCGTCCGAAGCTGAGGC...................................................	22	2	1	4.00	4	4	0	0	0	0	0
.................................................................................................TGAAACCGTCCAAAACTG.......................................................	18	0	1	4.00	4	4	0	0	0	0	0
.................................................................................................TGAAACCGGCCCAAACTGAGGC...................................................	22	2	1	4.00	4	4	0	0	0	0	0
.................................................................................................TGAAACCGTCAGAAAATGAGGC...................................................	22	3	1	4.00	4	2	2	0	0	0	0
.................................................................................................TGAAACCGTCCAAAACTGAGGCAA.................................................	24	1	1	4.00	4	0	1	0	3	0	0
.................................................................................................TGAAACCGTCCTTAACTGAGG....................................................	21	2	1	4.00	4	4	0	0	0	0	0
.................................................................................................TGAAACCGGCCAAAACTGACG....................................................	21	2	1	4.00	4	4	0	0	0	0	0
.................................................................................................TGAGACCGTCCTAAACTGAGGC...................................................	22	2	1	4.00	4	3	1	0	0	0	0
.................................................................................................TGAAACAGTCCAAAACTCAGGC...................................................	22	2	1	4.00	4	4	0	0	0	0	0
.................................................................................................TGAAACCGTCCAAAACCTAGG....................................................	21	2	1	4.00	4	3	0	1	0	0	0
.................................................................................................TGAAAGCGTCGATAACTGAGGC...................................................	22	3	1	4.00	4	3	1	0	0	0	0
.................................................................................................TGAAACCGTCCAAAACTGAGTCA..................................................	23	2	1	4.00	4	3	1	0	0	0	0
.................................................................................................TGAAACCGTCCAACACTGAGTC...................................................	22	2	1	4.00	4	4	0	0	0	0	0
.................................................................................................GGAAACCGCCCAAAACTGAGG....................................................	21	2	1	4.00	4	2	2	0	0	0	0
.................................................................................................TGCAACCGTCCAAAACTGAGGC...................................................	22	1	1	4.00	4	4	0	0	0	0	0
.................................................................................................TGAAACCGGCCAAAACTGAGGCT..................................................	23	2	1	4.00	4	3	0	0	1	0	0
.................................................................................................TGAAACCGTCCAAAACTGACC....................................................	21	2	1	4.00	4	4	0	0	0	0	0
.................................................................................................TGAAACCGGCCAGAACTGAGGC...................................................	22	2	1	4.00	4	3	1	0	0	0	0
.................................................................................................TGATACCGTCCAAAACTGAGGC...................................................	22	1	1	4.00	4	3	0	1	0	0	0
.................................................................................................TGACACCGTCCATAACTGAGGC...................................................	22	2	1	4.00	4	4	0	0	0	0	0
.................................................................................................TGAAAACGGCCAAAACTGAGGC...................................................	22	2	1	4.00	4	2	2	0	0	0	0
.................................................................................................TGAAACCGACCAAAACTCAGGC...................................................	22	2	1	4.00	4	3	1	0	0	0	0
.................................................................................................TGAAACCGTCCATAACTGATG....................................................	21	2	1	4.00	4	3	1	0	0	0	0
.................................................................................................TGAAACCGGCCAAAACTGAGGCA..................................................	23	2	1	4.00	4	4	0	0	0	0	0
.................................................................................................TGAAACCGTCCATAACTAAGGC...................................................	22	2	1	4.00	4	2	2	0	0	0	0
.................................................................................................TGAAACCGTCCGAAACTGAGTC...................................................	22	2	1	4.00	4	3	1	0	0	0	0
.................................................................................................TGAAACCGCCCCAAACTGAGGC...................................................	22	2	1	4.00	4	3	1	0	0	0	0
.................................................................................................TGAAACCGTCCATAACAGAGG....................................................	21	2	1	4.00	4	1	3	0	0	0	0
.................................................................................................TGGAACCGTCCATAACTGGGG....................................................	21	3	1	4.00	4	4	0	0	0	0	0
.................................................................................................TGAAACCGTCCAAAACCGACGC...................................................	22	2	1	4.00	4	3	1	0	0	0	0
.................................................................................................TGAAACAGGCCAAAACTGAGGC...................................................	22	2	1	4.00	4	3	1	0	0	0	0
.................................................................................................TGAAACCGTCCAAAACCGAG.....................................................	20	1	1	4.00	4	3	1	0	0	0	0
.................................................................................................TGAAACCGTCCAAAACTCTGG....................................................	21	2	1	4.00	4	3	1	0	0	0	0
.................................................................................................TGAAACCGAACAAAACTGAGGC...................................................	22	2	2	3.50	7	5	1	0	0	0	1
.................................................................................................TGAAACCGTCATAAACTGAGGC...................................................	22	2	1	3.00	3	3	0	0	0	0	0
.................................................................................................TGAAAGCGTCCAAAACTGGGGC...................................................	22	2	1	3.00	3	3	0	0	0	0	0
.................................................................................................TGGAACCGTCCATAACTGAGGC...................................................	22	2	1	3.00	3	3	0	0	0	0	0
.................................................................................................TGAAACCGTCCTAAACTCAGG....................................................	21	2	1	3.00	3	3	0	0	0	0	0
.................................................................................................TGAAACCGTCCATAACTGGGGC...................................................	22	2	1	3.00	3	1	2	0	0	0	0
.................................................................................................CGAAACCGTCCAAAACCGAGG....................................................	21	2	1	3.00	3	2	1	0	0	0	0
.................................................................................................TGAAACCGTCCACAACTGCGG....................................................	21	2	1	3.00	3	1	2	0	0	0	0
.................................................................................................TGAAACCGCCCAATACTGAGGC...................................................	22	2	1	3.00	3	3	0	0	0	0	0
.................................................................................................TGAAACCGCCCAAAACGGAGG....................................................	21	2	1	3.00	3	3	0	0	0	0	0
.................................................................................................AGAAACCGACCAAAACTGAGG....................................................	21	2	1	3.00	3	3	0	0	0	0	0
.................................................................................................TGAAAGCGTCCATAACTGAGTC...................................................	22	3	3	3.00	9	9	0	0	0	0	0
.................................................................................................AGAAACCGTCCAAAACTGAGCC...................................................	22	2	1	3.00	3	2	1	0	0	0	0
.................................................................................................TGAAACCGGCAAAAACTGAGG....................................................	21	2	1	3.00	3	3	0	0	0	0	0
.................................................................................................TGAAACCGTCCAACACCGAGTC...................................................	22	3	1	3.00	3	3	0	0	0	0	0
.................................................................................................TGAAACCGTCCACCACTGAGGC...................................................	22	2	1	3.00	3	1	2	0	0	0	0
.................................................................................................TGAAACCGTCCAACACTGAGCC...................................................	22	2	1	3.00	3	3	0	0	0	0	0
.................................................................................................TGAAACCGCCCAATACTGAGG....................................................	21	2	1	3.00	3	3	0	0	0	0	0
.................................................................................................TGAAACCGCTCAAAACTGAGGC...................................................	22	2	1	3.00	3	3	0	0	0	0	0
.................................................................................................CGAAACCGTCCAAAACTGAGGCA..................................................	23	2	1	3.00	3	2	1	0	0	0	0
.................................................................................................GGAAACCGCCCAAAACTGAGGC...................................................	22	2	1	3.00	3	2	1	0	0	0	0
.................................................................................................TGAAACCGTCCAAAAAAGAGG....................................................	21	2	1	3.00	3	2	1	0	0	0	0
.................................................................................................TGAAACCGTCCAATGCTGAGG....................................................	21	2	1	3.00	3	3	0	0	0	0	0
.................................................................................................TGAAACCGTCCAAACCCGAGG....................................................	21	2	1	3.00	3	2	1	0	0	0	0
.................................................................................................TGAAAACGTCCATAACTGAGG....................................................	21	2	1	3.00	3	3	0	0	0	0	0
.................................................................................................TGAAACCGTCCATAACTGATGC...................................................	22	2	1	3.00	3	3	0	0	0	0	0
.................................................................................................TGAAACCGTCCTAAACTCAGGC...................................................	22	2	1	3.00	3	3	0	0	0	0	0
.................................................................................................TGAAACCGTCCAAACCTGAGGCT..................................................	23	2	1	3.00	3	3	0	0	0	0	0
.................................................................................................TGAAAGCGGCCAAAACTGAGGC...................................................	22	2	1	3.00	3	3	0	0	0	0	0
.................................................................................................TGAAACCGTCCAAAACTGGG.....................................................	20	1	1	3.00	3	2	0	1	0	0	0
.................................................................................................TGAAACCGTCCGGAACTGAGG....................................................	21	2	1	3.00	3	3	0	0	0	0	0
.................................................................................................TGAAACCGTCCAACCCTGAGGC...................................................	22	2	1	3.00	3	1	2	0	0	0	0
.................................................................................................TGAAACCGTCCAAAACGCAGGC...................................................	22	2	1	3.00	3	3	0	0	0	0	0
.................................................................................................TGAAACGGTCCAAAACTGAGG....................................................	21	1	1	3.00	3	3	0	0	0	0	0
.................................................................................................GGAAACCGTCCACAACTGAGG....................................................	21	2	1	3.00	3	2	1	0	0	0	0
.................................................................................................TGAAACCGCCCAAAACAGAGGC...................................................	22	2	1	3.00	3	3	0	0	0	0	0
..................................................................................................GAAACCGTCCAAAACTGAGGCA..................................................	22	1	1	3.00	3	1	0	0	2	0	0
.................................................................................................TGAAACCGTCCACACCTGAGGC...................................................	22	2	1	3.00	3	3	0	0	0	0	0
.................................................................................................TGAAACCGTCCAACACTGATGC...................................................	22	2	1	3.00	3	3	0	0	0	0	0
.................................................................................................TGAAACCGTCCAGAAATGAGGC...................................................	22	2	1	3.00	3	3	0	0	0	0	0
.................................................................................................TGAAACCGTCCAAACCTCAGG....................................................	21	2	1	3.00	3	3	0	0	0	0	0
...................................................................................................AAACCGTCCAAAACTGAG.....................................................	18	0	1	3.00	3	0	0	0	3	0	0
.................................................................................................TGAAACCGTGCATAACTGAGG....................................................	21	2	1	3.00	3	2	1	0	0	0	0
.................................................................................................TGACACCGTCCATAACTGAGG....................................................	21	2	1	3.00	3	3	0	0	0	0	0
.................................................................................................TGAAACCGTCCAAAACCGAGTC...................................................	22	2	1	3.00	3	3	0	0	0	0	0
.................................................................................................TGAAACCGTCCAAAACCGACTC...................................................	22	3	1	3.00	3	3	0	0	0	0	0
.................................................................................................TGATACCGTCCAAAACTGAGG....................................................	21	1	1	3.00	3	2	1	0	0	0	0
.................................................................................................TGAAACCGACCAAAACTGAGCC...................................................	22	2	1	3.00	3	3	0	0	0	0	0
.................................................................................................TGAAACCGTCCAAAACTTATGC...................................................	22	2	1	3.00	3	3	0	0	0	0	0
.................................................................................................TGAAACCGTCCACAACTGAG.....................................................	20	1	1	3.00	3	1	2	0	0	0	0
.................................................................................................TGAAACCGACCATAACTGAGG....................................................	21	2	1	3.00	3	3	0	0	0	0	0
.................................................................................................TGAAACCGCCCAAACCTGAGGC...................................................	22	2	1	3.00	3	3	0	0	0	0	0
.................................................................................................TGAAACCGTCCAAAACTCTGGC...................................................	22	2	1	3.00	3	3	0	0	0	0	0
.................................................................................................TGAAACCGTCCAAACCTGATGC...................................................	22	2	1	3.00	3	3	0	0	0	0	0
.................................................................................................TGAAACCGTCCAAAACTCAGAC...................................................	22	2	1	3.00	3	3	0	0	0	0	0
.................................................................................................TGAAACCGGCCAAAAATGAGG....................................................	21	2	1	3.00	3	3	0	0	0	0	0
.................................................................................................TGAAACCGGCCAACACTGAGGC...................................................	22	2	1	3.00	3	3	0	0	0	0	0
.................................................................................................TGAAACCGTCCACAACTGAGGCA..................................................	23	2	1	3.00	3	2	1	0	0	0	0
.................................................................................................TGAAACCGACCAAAACCGAGGC...................................................	22	2	1	3.00	3	2	1	0	0	0	0
.................................................................................................TGACACCGTCCATAACTGAGTC...................................................	22	3	1	3.00	3	3	0	0	0	0	0
.................................................................................................TGAAACCGGCCAAAGCGGAGGC...................................................	22	3	1	3.00	3	2	1	0	0	0	0
.................................................................................................AGAAACCGTCCAAAACTCAGGC...................................................	22	2	1	3.00	3	3	0	0	0	0	0
.................................................................................................TGAAACCGCCCAAAACTGACGC...................................................	22	2	1	3.00	3	3	0	0	0	0	0
.................................................................................................TGAAACCGTCCATAGCTGAGGC...................................................	22	2	1	3.00	3	3	0	0	0	0	0
.................................................................................................TGAAACCGTCCATAACTGACG....................................................	21	2	1	3.00	3	3	0	0	0	0	0
.................................................................................................TGGAAGCGTCCATAACTGAGGC...................................................	22	3	1	3.00	3	3	0	0	0	0	0

TAGGGACGTTTTCTTTTTGTTGGGTGGTCTTATATGACAGGTGTTACCTGGAATCAAAAGCTGCACAAAACCACACGACCCCTCAACTATAAGGCTAACTTTGGCAGGTTTTGACTCCGGTTGACACGCCGTACTCGTAGATTGGTTTTTTTTTATAATTATTATTATTC **********************************.((((((((.(((.((((((((((.((((.((((((((.......(((((....))))).)))))))))))).)))))))))))))..)))).))))..*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M042 female body	V111 male body	V057 head	V050 head	V042 embryo
...................................GAGAGCTGTTACCTGGAATCG..................................................................................................................	21	3	2	17.00	34	13	15	6	0	0
...................................GAGAGCTGTTACCTGGAATC...................................................................................................................	20	2	1	15.00	15	9	2	3	1	0
..................................GGAGAGCTGTTACCTGGAATC...................................................................................................................	21	3	3	7.33	22	7	8	7	0	0
...................................GAGAGCTGTTACCTGGAA.....................................................................................................................	18	2	2	5.00	10	9	0	1	0	0
....................................AGAGCTGTTACCTGGAATC...................................................................................................................	19	2	2	4.50	9	5	1	3	0	0
......................................AGCTGTTACCTGGAATCG..................................................................................................................	18	2	3	2.67	8	4	0	4	0	0
...................................GAGAGCTGTTACCTGGAAT....................................................................................................................	19	2	2	2.50	5	2	3	0	0	0
...................................GATAGCTGTTACCTGGAATCG..................................................................................................................	21	3	2	0.50	1	0	1	0	0	0
.....................................GAGCTGTTACCTGGAATC...................................................................................................................	18	2	4	0.50	2	1	0	1	0	0
..................................................................................................CTTTGGGAGGTTGTGAATC.....................................................	19	3	17	0.29	5	3	2	0	0	0
....................................AGAGCTGTTACCTGGAAT....................................................................................................................	18	2	7	0.29	2	0	0	2	0	0
..................................................................................................CTTTGGGAGGTTGTGAATCC....................................................	20	3	5	0.20	1	1	0	0	0	0
......................................AGCTGTTACCTGGAATCGT.................................................................................................................	19	3	17	0.18	3	2	0	1	0	0
................TTGTTGGGTGGTGGTATA........................................................................................................................................	18	2	13	0.08	1	0	0	0	0	1

Species	Coordinate	ID	Type	Alignment
droPer2	scaffold_80:80350-80519 +	dpe_9	confident	ATCCCTGCAAAAGAAAAAC--------------------------AACCCA-----CCAGAATATACTGTCCACAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TTGATATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GCGGCATGAGCATCTAACCAA---AA-AAAAATATTAATAATAATAAG
dp5	XR_group8:186448-186617 -	dps-mir-957	Known_mirbase	ATCCCTGCAAAAGAA----------------------------AAACAACCCACCA--GT-AAATACTGTCCACAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TTGATATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GCGGCATGAGCATCTAACCAA---AA-AAAAATATTAATAATAATAAG
droWil2	scf2_1100000004511:7262492-7262611 +	dwi_5	confident	-------------------------------------------------------------------TATCCGCAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTTAGGAAGTTTT-CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAATTGTTGTGATAGAAGCAACCATGAAA---AC-AAA----------A-------
droVir3	scaffold_13049:17242415-17242540 +	dvi-mir-957	Known_mirbase	AT---------------------------------------------------------------AATGCCCACAATGGTTCTTAGTTTTAGACGTGTTTTGGTGTGCTTG-A-AG--TT-TTGTTCCGATTGAAACCGTCCAAAACTGAGGCCGATTGT-GAGGTAAAAGCGTCCAAATACTAAAA-CAAAATAT-------------
droMoj3	scaffold_6680:22273683-22273802 +	dmo_6	confident	ACA-------------------------------------------------------------AAATGCCCACAATGGATCTTAGTTTTAGACGTGTTTTGGTGTGCTTGGG-AG--TT-TTGTTCCGATTGAAACCGTCCAAAACTGAGGCCAATTGT-GAGGCGAAAGCATCCAGAAGG---AA-A------------A-------
droGri2	scaffold_15110:14942019-14942124 -	dgr_26	candidate-rescued	-------------------------------------------------------------------TACCCACAATGGATCTTAGTTTTAGACGTGTTTTGGTGTGCTTGGG-AG--TT-TTGTTCCGATTGAAACCGTCCAAAACTGAGGCCAATTGT-GTGGTAAAAGCATCCAA-------------------------------
droAna3	scaffold_13337:22247675-22247786 -	dan_6	confident	AT-------------------------------------------------------------ATACTGCCTACAATGGCCCTTAGTTTTCGACGTGTTTTGGTGTGCAGGGG-AG--TT-CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCTAA-------------------------------
droBip1	scf7180000396426:572736-572848 +			----------------------------------------------------------------TATTGCCCACAATGGTCCTTAGTTTTCGACGTGTTTTGGTGTGCAGGGG-AG--TT-CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCTAACCAA---------------------------
droKik1	scf7180000302808:850789-850912 -			ATC--------------------------------------------------TCCATACAGAGTGATGTCCACAATGAACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TT-CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCGTCTACC------------------------------
droFic1	scf7180000453830:518555-518705 +			GCC-----------------------------------TT--AAAATGTCA-----AAGTAGAGTGTGGCCCGCAATGAACCTTAGTTTTAGACGTGTTTTGGTGTG-TGGGG-AG--CG-ATATTCCGATTGAAACCGTCCAAAACTGAGGCTAACTGT-GAGGCGTGAGCGTCTAACCAA---AACAGCGATATTAACGA-------
droEle1	scf7180000491199:234603-234747 +			A---------------------------------------AGAACATCTTT-----ATATAGAGTGTTGCCCACAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TT-CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCTAACAAA------AGCGATACTAAC---------
droRho1	scf7180000779133:19445-19597 +			ATC-----------------------------------AAAGAAAATCTTT-----AAATAGAGTGTTGCCCACAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TT-CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCCAACCAA---AA-AACGATACTAACGA-------
droBia1	scf7180000302377:742003-742152 +			ATC-----------------------------------CACGAA-ATCCCA-----GCGTAGAATGATGTCCACAATGAACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TT-GAATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GCGGCGTGAGCATCTAACCAA---AA-TGCGATACCAAC---------
droTak1	scf7180000415491:455690-455828 -			ATC-----------------------------------CACGAAAATCCTA-----ATGTAGCGTGTTGTCCACAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TT-CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCTAACCAA---AG----------------------
droEug1	scf7180000409801:98856-99017 -			AG---TGTCCGAGTAAAGTG-CCT------TGTTCATCCAAGAATACCCTG-----ATGTGGAGTGTTGTCCACAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TT-CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGAGAGCATCTGACCAA---------------------------
dm3	chr3L:22511266-22511423 -	dme-mir-957	Known_mirbase	GT-------------------------------TCATCCAAGAATATATTATATCC--GT--AGTGTTGTCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TT-CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGCGAGCATCTATCCAA---AA-AGCGATACCAACGA-------
droSim2	3l:22030944-22031105 -	dsi-mir-957	Known_mirbase	ATC---------------------------TGTTCATCCAAGAATGCATTGTATCC--GT--AGTGTTGTCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TT-CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCTATCCAA---AA-AGCGATACCAACCA-------
droSec2	scaffold_11:2446940-2447101 -	dse_9	confident	ATC---------------------------TGTTCATCCAAGAATGCATTGTATCC--GT--AGTGTTGTCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TT-CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCTATCCAA---AA-AGAGATACCAACCA-------
droYak3	3L:22971956-22972113 -	dya_2	confident	GT-------------------------------TCATCCAAGAATATATCATATCC--GT--AGTGTTGTCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TT-ATATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCAACTATCCAA---AC-AGCGATACCAACGA-------
droEre2	scaffold_4784:22180723-22180911 -	der_4	confident	ATCAGTGCCCAAGAAAAGTGACCTTCGAACTGTTCATCTAAGAATGTACCATATCC--GT--AGTGTTGTCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TT-CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCTATCCAA---AC-AGCGATACCAACGA-------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droPer2

ATCCCTGCAAAAGAAAAAC--------------------------AACCCA-----CCAGAATATACTGTCCACAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TTGATATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GCGGCATGAGCATCTAACCAA---AA-AAAAATATTAATAATAATAAG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...................................................................................................................................TGAAACCGTCCAAAACTGAGGC........................................................	22	1	21405.00	21405	819	450	47	6611	10408	3070
...................................................................................................................................TGAAACCGTCCAAAACTGAGG.........................................................	21	1	19541.00	19541	29	665	12	5873	9008	3954
...................................................................................................................................TGAAACCGTCCAAAACTGAG..........................................................	20	1	1009.00	1009	1	44	1	309	514	140
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCA.......................................................	23	1	398.00	398	0	13	0	136	223	26
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCT.......................................................	23	1	261.00	261	10	10	0	57	151	33
...................................................................................................................................TGAAACCGTCCAAAACTGAGGT........................................................	22	1	161.00	161	1	3	0	38	92	27
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCC.......................................................	23	1	101.00	101	7	4	0	26	46	18
...................................................................................................................................TGAAACCGTCCAAAACTGAGGA........................................................	22	1	86.00	86	1	3	0	35	35	12
...................................................................................................................................TGAAACCGTCCAAAACTGA...........................................................	19	1	68.00	68	14	4	0	11	38	1
....................................................................................................................................GAAACCGTCCAAAACTGAGGC........................................................	21	1	67.00	67	4	40	0	10	9	4
....................................................................................................................................GAAACCGTCCAAAACTGAGG.........................................................	20	1	61.00	61	0	42	0	10	6	3
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCTT......................................................	24	1	56.00	56	2	1	0	20	26	7
...................................................................................................................................TGAAACCGTCCAAAACTGAGT.........................................................	21	1	40.00	40	1	1	0	10	24	4
...................................................................................................................................TGAAACCGTCCAAAACTGAGC.........................................................	21	1	35.00	35	0	0	0	8	21	6
.................................................................................CTTAGTTTTCGACGTGTTTTGGT.........................................................................................................	23	1	26.00	26	0	1	0	9	6	10
...................................................................................................................................TGAAACCGTCCAAAACTGAGA.........................................................	21	1	23.00	23	0	1	0	7	12	3
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCCT......................................................	24	1	16.00	16	0	1	0	4	10	1
.....................................................................................................................................AAACCGTCCAAAACTGAGGC........................................................	20	1	12.00	12	0	2	0	3	7	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCCA......................................................	24	1	8.00	8	0	0	0	1	7	0
.....................................................................................................................................AAACCGTCCAAAACTGAGG.........................................................	19	1	8.00	8	0	4	0	1	3	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGTT.......................................................	23	1	6.00	6	0	0	0	0	6	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGG........................................................	22	1	6.00	6	2	2	0	1	1	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCG.......................................................	23	1	6.00	6	0	0	0	4	2	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCTG......................................................	24	1	5.00	5	0	0	0	1	4	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCTTT.....................................................	25	1	4.00	4	0	0	0	0	4	0
...................................................................................................................................TGAAACCGTCCAAAACTG............................................................	18	1	4.00	4	0	0	0	0	4	0
...................................................................................................................................TGAAACCGTCCAAAACTGACC.........................................................	21	1	4.00	4	0	0	0	0	4	0
....................................................................................................................................GAAACCGTCCAAAACTGAGGCA.......................................................	22	1	3.00	3	0	2	0	0	1	0
.....................................................................................................................................AAACCGTCCAAAACTGAG..........................................................	18	1	3.00	3	0	3	0	0	0	0

dp5

ATCCCTGCAAAAGAA----------------------------AAACAACCCACCA--GT-AAATACTGTCCACAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TTGATATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GCGGCATGAGCATCTAACCAA---AA-AAAAATATTAATAATAATAAG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...................................................................................................................................TGAAACCGTCCAAAACTGAGGC........................................................	22	1	35574.00	35574	175	3540	345	19166	96	7655	883	187	43	3484
...................................................................................................................................TGAAACCGTCCAAAACTGAGG.........................................................	21	1	32520.00	32520	29	6290	31	17179	11	7277	1268	36	13	386
...................................................................................................................................TGAAACCGTCCAAAACTGAG..........................................................	20	1	1718.00	1718	3	635	1	510	0	488	74	0	0	7
....................................................................................................................................GAAACCGTCCAAAACTGAGG.........................................................	20	1	534.00	534	0	486	1	32	0	13	1	1	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCT.......................................................	23	1	482.00	482	10	107	1	300	0	55	7	0	0	2
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCA.......................................................	23	1	428.00	428	2	126	0	151	3	123	7	5	0	11
....................................................................................................................................GAAACCGTCCAAAACTGAGGC........................................................	21	1	392.00	392	2	286	2	60	0	11	1	2	1	27
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCC.......................................................	23	1	252.00	252	1	19	5	195	0	29	1	0	0	2
...................................................................................................................................TGAAACCGTCCAAAACTGAGGT........................................................	22	1	235.00	235	1	29	2	141	0	51	7	2	0	2
...................................................................................................................................TGAAACCGTCCAAAACTGAGGA........................................................	22	1	129.00	129	0	25	1	69	0	31	2	0	0	1
...................................................................................................................................TGAAACCGTCCAAAACTGA...........................................................	19	1	119.00	119	4	53	0	35	0	25	1	0	0	1
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCTT......................................................	24	1	111.00	111	9	33	0	43	0	24	1	1	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGC.........................................................	21	1	94.00	94	0	0	1	76	0	14	3	0	0	0
....................................................................................................................................GAAACCGTCCAAAACTGAG..........................................................	19	1	58.00	58	0	58	0	0	0	0	0	0	0	0
.....................................................................................................................................AAACCGTCCAAAACTGAGGC........................................................	20	1	45.00	45	0	19	0	14	0	6	0	0	0	6
.....................................................................................................................................AAACCGTCCAAAACTGAGG.........................................................	19	1	36.00	36	0	28	0	2	0	5	0	0	0	1
...................................................................................................................................TGAAACCGTCCAAAACTGAGA.........................................................	21	1	35.00	35	0	6	0	22	0	7	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGT.........................................................	21	1	30.00	30	0	1	0	21	0	7	1	0	0	0
.................................................................................CTTAGTTTTCGACGTGTTTTGGT.........................................................................................................	23	1	26.00	26	0	1	2	5	6	10	1	0	0	1
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCCT......................................................	24	1	23.00	23	0	7	0	9	0	7	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAC..........................................................	20	1	19.00	19	0	0	0	19	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCAT......................................................	24	1	14.00	14	0	11	0	3	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGTT.......................................................	23	1	12.00	12	0	2	0	6	0	4	0	0	0	0
....................................................................................................................................GAAACCGTCCAAAACTGAGGCT.......................................................	22	1	11.00	11	0	10	0	1	0	0	0	0	0	0
....................................................................................................................................GAAACCGTCCAAAACTGAGGCA.......................................................	22	1	11.00	11	0	11	0	0	0	0	0	0	0	0
....................................................................................................................................GAAACCGTCCAAAACTGAGGCC.......................................................	22	1	7.00	7	0	1	0	5	0	1	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGG........................................................	22	1	7.00	7	0	3	0	3	0	1	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGG...........................................................	19	1	6.00	6	1	0	0	5	0	0	0	0	0	0
..................................................................................................................................TTGAAACCGTCCAAAACTGAGG.........................................................	22	1	6.00	6	0	6	0	0	0	0	0	0	0	0
......................................................................................................................................AACCGTCCAAAACTGAGG.........................................................	18	1	6.00	6	0	5	0	1	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTG............................................................	18	1	5.00	5	0	1	0	1	0	2	0	0	0	1
....................................................................................................................................GAAACCGTCCAAAACTGAGGCTT......................................................	23	1	5.00	5	0	4	0	0	0	1	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGAA.......................................................	23	1	4.00	4	0	1	0	1	0	2	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCCC......................................................	24	1	4.00	4	0	0	0	3	0	1	0	0	0	0
.................................................................................CTTAGTTTTCGACGTGTTTTGGC.........................................................................................................	23	1	3.00	3	0	0	0	3	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCG.......................................................	23	1	3.00	3	0	1	0	1	0	1	0	0	0	0
.......................................................................................................................................ACCGTCCAAAACTGAGGC........................................................	18	1	3.00	3	0	2	0	1	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCTTT.....................................................	25	1	3.00	3	0	1	0	2	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCCA......................................................	24	1	3.00	3	0	3	0	0	0	0	0	0	0	0
.................................................................................CTTAGTTTTCGACGTGTTTTGG..........................................................................................................	22	1	3.00	3	0	0	0	2	0	1	0	0	0	0
......................................................................................................................................AACCGTCCAAAACTGAGGC........................................................	19	1	3.00	3	0	0	0	3	0	0	0	0	0	0
....................................................................................................................................GAAACCGTCCAAAACTGA...........................................................	18	1	3.00	3	0	3	0	0	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCAC......................................................	24	1	3.00	3	0	2	0	1	0	0	0	0	0	0
.....................................................................................................................................AAACCGTCCAAAACTGAG..........................................................	18	1	3.00	3	0	3	0	0	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGT...........................................................	19	1	2.00	2	0	0	0	2	0	0	0	0	0	0
.................................................................................CTTAGTTTTCGACGTGTTTTGGTT........................................................................................................	24	1	2.00	2	0	0	0	0	1	1	0	0	0	0
.................................................................................CTTAGTTTTCGACGTGTTTTGGTGT.......................................................................................................	25	1	2.00	2	0	0	0	0	0	2	0	0	0	0

droWil2

-------------------------------------------------------------------TATCCGCAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTTAGGAAGTTTT-CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAATTGTTGTGATAGAAGCAACCATGAAA---AC-AAA----------A-------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...................................................................................................................................TGAAACCGTCCAAAACTGAGGC........................................................	22	1	236519.00	236519	209115	955	1255	856	24338
...................................................................................................................................TGAAACCGTCCAAAACTGAGG.........................................................	21	1	54238.00	54238	23886	956	1656	121	27619
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCT.......................................................	23	1	8157.00	8157	7961	30	12	1	153
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCC.......................................................	23	1	3320.00	3320	3257	7	3	3	50
...................................................................................................................................TGAAACCGTCCAAAACTGAG..........................................................	20	1	2989.00	2989	2296	64	72	3	554
...................................................................................................................................TGAAACCGTCCAAAACTGA...........................................................	19	1	2269.00	2269	2195	9	1	1	63
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCTT......................................................	24	1	961.00	961	943	3	3	1	11
...................................................................................................................................TGAAACCGTCCAAAACTG............................................................	18	1	828.00	828	828	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCA.......................................................	23	1	563.00	563	339	25	14	1	184
....................................................................................................................................GAAACCGTCCAAAACTGAGGC........................................................	21	1	552.00	552	452	71	1	1	27
...................................................................................................................................TGAAACCGTCCAAAACTGAGGA........................................................	22	1	467.00	467	107	6	7	1	346
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCCT......................................................	24	1	337.00	337	331	2	1	0	3
...................................................................................................................................TGAAACCGTCCAAAACTGG...........................................................	19	1	275.00	275	274	0	0	0	1
...................................................................................................................................TGAAACCGTCCAAAACTGAGGT........................................................	22	1	270.00	270	185	3	8	3	71
...................................................................................................................................TGAAACCGTCCAAAACTGAGGG........................................................	22	1	233.00	233	227	0	0	0	6
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCG.......................................................	23	1	176.00	176	151	3	0	0	22
.....................................................................................................................................AAACCGTCCAAAACTGAGGC........................................................	20	1	149.00	149	141	4	0	0	4
....................................................................................................................................GAAACCGTCCAAAACTGAGG.........................................................	20	1	141.00	141	32	69	3	0	37
...................................................................................................................................TGAAACCGTCCAAAACTGAGA.........................................................	21	1	110.00	110	25	0	0	0	85
.................................................................................CTTAGTTTTCGACGTGTTTTGGT.........................................................................................................	23	1	71.00	71	5	0	1	10	55
...................................................................................................................................TGAAACCGTCCAAAACTGAC..........................................................	20	1	64.00	64	64	0	0	0	0
......................................................................................................................................AACCGTCCAAAACTGAGGC........................................................	19	1	48.00	48	44	2	0	0	2
...................................................................................................................................TGAAACCGTCCAAAACTGAGT.........................................................	21	1	46.00	46	23	0	1	0	22
...................................................................................................................................TGAAACCGTCCAAAACTGAGC.........................................................	21	1	45.00	45	18	0	1	0	26
.....................................................................................................................................AAACCGTCCAAAACTGAGG.........................................................	19	1	43.00	43	24	0	0	0	19
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCCC......................................................	24	1	35.00	35	35	0	0	0	0
..................................................................................................................................TTGAAACCGTCCAAAACTGAGGC........................................................	23	1	23.00	23	20	3	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGAA.......................................................	23	1	17.00	17	14	0	0	0	3
....................................................................................................................................GAAACCGTCCAAAACTGAGGCT.......................................................	22	1	17.00	17	13	4	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTA............................................................	18	1	14.00	14	14	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCCG......................................................	24	1	13.00	13	13	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCTTT.....................................................	25	1	13.00	13	11	0	0	0	2
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCTG......................................................	24	1	12.00	12	12	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCTC......................................................	24	1	12.00	12	11	1	0	0	0
....................................................................................................................................GAAACCGTCCAAAACTGAG..........................................................	19	1	12.00	12	6	6	0	0	0
....................................................................................................................................GAAACCGTCCAAAACTGAGGCC.......................................................	22	1	10.00	10	10	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAA..........................................................	20	1	9.00	9	5	0	0	0	4
....................................................................................................................................GAAACCGTCCAAAACTGAGGCA.......................................................	22	1	8.00	8	2	5	0	0	1
...................................................................................................................................TGAAACCGTCCAAAACTGT...........................................................	19	1	8.00	8	8	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCAT......................................................	24	1	8.00	8	3	0	0	0	5
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCCA......................................................	24	1	7.00	7	3	1	1	0	2
.......................................................................................................................................ACCGTCCAAAACTGAGGC........................................................	18	1	7.00	7	7	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGGC..........................................................	20	1	6.00	6	0	0	0	0	6
...................................................................................................................................TGAAACCGTCCAAAACTGC...........................................................	19	1	5.00	5	4	0	0	0	1
...................................................................................................................................TGAAACCGTCCAAAACTGAGTT........................................................	22	1	5.00	5	3	0	0	0	2
...................................................................................................................................TGAAACCGTCCAAAACTGAGGTT.......................................................	23	1	4.00	4	2	1	0	0	1
...................................................................................................................................TGAAACCGTCCAAAACTGAGAA........................................................	22	1	4.00	4	1	0	0	0	3
..................................................................................................................................TTGAAACCGTCCAAAACTGAGG.........................................................	22	1	4.00	4	3	1	0	0	0
..................................................................................TTAGTTTTCGACGTGTTTTGGT.........................................................................................................	22	1	4.00	4	0	0	0	0	4
...................................................................................................................................TGAAACCGTCCAAAACTGAT..........................................................	20	1	3.00	3	0	0	1	0	2
.....................................................................................................................................AAACCGTCCAAAACTGAG..........................................................	18	1	3.00	3	2	1	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGAT.......................................................	23	1	3.00	3	0	0	0	0	3
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCAC......................................................	24	1	2.00	2	2	0	0	0	0
.....................................................................................................................................AAACCGTCCAAAACTGAGGCT.......................................................	21	1	2.00	2	2	0	0	0	0
......................................................................................................................................AACCGTCCAAAACTGAGGCC.......................................................	20	1	2.00	2	2	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAAT.........................................................	21	1	2.00	2	0	0	0	0	2
...................................................................................................................................TGAAACCGTCCAAAACTGAAA.........................................................	21	1	2.00	2	2	0	0	0	0

droVir3

AT---------------------------------------------------------------AATGCCCACAATGGTTCTTAGTTTTAGACGTGTTTTGGTGTGCTTG-A-AG--TT-TTGTTCCGATTGAAACCGTCCAAAACTGAGGCCGATTGT-GAGGTAAAAGCGTCCAAATACTAAAA-CAAAATAT-------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells	SRR2096013 Ovary_Strain_9_oxidized	SRR2096014 Ovary_Strain_160_oxidized	SRR2096026 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096038 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096050 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096055 Ovary_Min_43	SRR2096056 Ovary_Min_46	SRR2096057 Ovary_Min_50	SRR2096058 Ovary_Min_98	SRR2096059 Ovary_Min_164	SRR2096060 Ovary_Min_193	SRR2096061 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096072 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096079 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096080 embryo_0-2h from 15to16 day old nondysgenic mothers	SRR2096081 embryo_0-2h from 15to16 day old nondysgenic mothers
...................................................................................................................................TGAAACCGTCCAAAACTGAGGC........................................................	22	1	126083.00	126083	2994	31314	889	945	387	25	474	14	312	25	60	33	35	150	2497	1133	638	1374	1188	562	13	1459	1780	271	391	441	570	625	43	55	22	72	50	15	183	88	32	91	275	15	10	18	29	4	2	5	2	5	6	6	6	10	2	7	6	32	28	773	187	89	5445	954	0	72	210	1428	1429	7451	9195	7987	5801	1804	3591	9513	5347	1734	1931	4158	5266
...................................................................................................................................TGAAACCGTCCAAAACTGAGG.........................................................	21	1	63068.00	63068	799	6421	1801	162	149	29	209	11	180	15	40	94	155	308	762	371	189	432	460	199	9	510	1025	164	277	280	414	283	26	32	8	29	164	16	348	143	117	179	154	6	2	10	1	2	5	5	0	9	6	1	7	0	2	2	1	2	4	538	13	28	7368	1758	0	29	76	3752	3543	5494	1298	1528	796	310	566	1121	3182	2128	2475	4288	5748
...................................................................................................................................TGAAACCGTCCAAAACTGAG..........................................................	20	1	3728.00	3728	98	1087	192	2	14	4	13	0	6	0	2	2	5	2	112	68	49	79	130	65	0	154	103	27	14	7	24	11	4	2	0	4	4	0	25	10	9	10	28	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	1	1	652	157	0	0	5	67	75	54	24	44	14	7	9	32	51	26	26	47	64
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCT.......................................................	23	1	3133.00	3133	221	1526	35	7	15	1	7	0	8	0	0	0	0	0	64	36	22	38	32	19	0	46	64	5	8	8	16	9	1	1	1	3	2	0	10	3	1	3	4	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22	2	0	83	15	0	1	4	30	23	229	37	27	35	10	11	35	154	27	28	61	82
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCA.......................................................	23	1	2922.00	2922	12	64	25	1	16	2	30	0	3	0	2	2	7	19	82	40	18	44	22	26	0	53	61	9	32	52	39	55	0	1	0	1	26	1	63	33	15	22	24	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	95	6	0	13	10	97	92	445	54	63	28	16	10	51	393	112	103	175	255
...................................................................................................................................TGAAACCGTCCAAAACTGA...........................................................	19	1	1794.00	1794	121	1380	13	0	2	0	1	0	0	0	0	0	0	0	8	7	4	4	7	9	0	2	5	1	3	1	1	0	1	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	0	0	94	5	0	0	0	4	5	3	11	23	11	6	10	22	6	2	1	5	2
...................................................................................................................................TGAAACCGTCCAAAACTGAGGT........................................................	22	1	1671.00	1671	10	36	9	8	26	1	36	0	12	0	1	1	4	3	12	9	7	13	8	1	0	7	6	27	26	24	31	24	2	2	0	1	2	0	11	5	5	9	28	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	0	35	6	0	5	23	5	1	16	239	210	264	56	130	239	14	2	3	6	6
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCAA......................................................	24	1	1619.00	1619	0	0	5	0	0	0	4	0	0	0	0	0	5	5	2	0	1	0	0	0	0	0	1	3	32	19	30	23	0	0	0	0	28	0	53	42	29	33	25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	10	12	99	99	336	12	10	5	3	0	5	257	67	77	118	166
...................................................................................................................................TGAAACCGTCCAAAACTGAGGA........................................................	22	1	931.00	931	2	35	6	5	0	0	0	0	5	0	0	1	2	4	6	2	4	2	2	2	0	4	4	1	2	1	1	2	0	0	0	0	1	0	3	0	1	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	43	5	0	0	1	71	70	152	10	0	1	0	0	4	122	53	49	104	140
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCC.......................................................	23	1	819.00	819	96	296	7	5	4	4	2	0	1	1	0	0	0	0	6	6	1	1	4	2	3	4	3	1	2	3	0	4	2	1	1	2	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	7	5	0	1	2	5	6	18	60	55	36	5	45	62	12	3	6	16	8
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCTT......................................................	24	1	631.00	631	33	254	4	0	0	0	0	0	0	1	0	0	0	0	3	2	2	2	3	1	0	4	7	0	1	0	1	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	12	0	1	9	1	0	1	0	5	6	35	43	35	36	12	29	48	16	3	1	8	7
...................................................................................................................................TGAAACCGTCCAAAACTG............................................................	18	1	395.00	395	29	257	2	0	0	0	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	2	3	24	21	16	10	9	6	2	1	2	1	0
....................................................................................................................................GAAACCGTCCAAAACTGAGGC........................................................	21	1	304.00	304	2	69	68	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	3	0	0	0	0	2	4	20	25	21	15	12	31	5	1	2	3	8
...................................................................................................................................TGAAACCGTCCAAAACTGG...........................................................	19	1	284.00	284	23	260	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................GAAACCGTCCAAAACTGAGG.........................................................	20	1	214.00	214	0	12	144	1	0	0	2	0	0	0	0	1	0	1	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	1	0	0	0	1	0	2	4	6	3	0	1	4	0	4	2	2	13
...................................................................................................................................TGAAACCGTCCAAAACTGAGGAA.......................................................	23	1	201.00	201	1	6	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	1	0	0	0	0	0	0	0	1	1	2	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	32	18	21	2	0	6	0	2	3	32	2	8	29	24
...................................................................................................................................TGAAACCGTCCAAAACTGAGA.........................................................	21	1	187.00	187	2	21	3	0	0	0	0	0	0	0	0	0	0	1	1	1	1	0	1	0	0	2	1	2	0	0	1	1	0	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	18	4	0	0	0	18	15	16	1	0	0	0	1	0	5	10	9	21	27
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCCT......................................................	24	1	112.00	112	11	17	0	0	0	0	1	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	2	6	8	5	5	15	2	5	16	1	2	0	7	1
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCG.......................................................	23	1	110.00	110	11	63	0	0	0	0	0	0	0	0	0	0	0	1	3	1	0	2	1	1	0	3	3	0	0	1	0	1	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	0	1	0	6	4	1	0	0	1	1
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCTA......................................................	24	1	108.00	108	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	3	0	1	1	1	3	0	0	0	0	1	0	1	5	1	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	5	5	29	0	2	3	1	0	0	21	3	1	4	6
...................................................................................................................................TGAAACCGTCCAAAACTGAGGG........................................................	22	1	93.00	93	12	57	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	0	0	0	0	1	0	0	1	0	0	0	0	0	2	1	6	3
...................................................................................................................................TGAAACCGTCCAAAACTGAGGTA.......................................................	23	1	74.00	74	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	8	3	10	0	0	0	0	2	0	3	0	4	3	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	3	6	9	0	3	3	2	1	0	0	1	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCAT......................................................	24	1	73.00	73	2	0	0	0	1	0	2	0	0	0	0	0	0	1	3	0	1	0	0	4	0	5	2	0	1	0	2	0	0	0	0	0	1	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	6	4	11	0	0	1	1	0	0	11	1	2	5	2
...................................................................................................................................TGAAACCGTCCAAAACTGAGGTAA......................................................	24	1	60.00	60	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	3	0	1	1	0	0	0	0	1	0	3	3	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	2	2	1	6	7	0	1	0	1	0	7	0	2	4	4
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCAC......................................................	24	1	60.00	60	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	4	13	2	2	0	0	0	1	9	4	9	3	8
...................................................................................................................................TGAAACCGTCCAAAACTGAC..........................................................	20	1	57.00	57	1	52	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGC.........................................................	21	1	48.00	48	1	6	0	1	1	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	1	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	26	2	0	0	0	3	0	2	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGT.........................................................	21	1	47.00	47	2	12	1	0	0	0	1	0	0	0	0	0	1	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	0	0	0	0	1	3	2	0	4	0	0	1	0	1	0	0	0	1
.....................................................................................................................................AAACCGTCCAAAACTGAGGC........................................................	20	1	45.00	45	1	21	5	0	0	0	0	0	0	0	0	0	0	0	1	0	1	2	1	0	0	1	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	0	0	0	1	0	3	3	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCCA......................................................	24	1	34.00	34	0	1	1	0	0	0	0	0	0	0	0	0	1	0	4	0	1	0	0	0	0	0	0	0	1	0	2	2	0	0	0	1	0	0	0	2	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	2	1	3	0	0	3	1	0	0	1	1
...................................................................................................................................TGAAACCGTCCAAAAC..............................................................	16	1	32.00	32	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	30	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCCC......................................................	24	1	30.00	30	13	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	3	1	0	0	6	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCTTT.....................................................	25	1	22.00	22	2	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	0	2	5	0	3	1	0	0	0	0	0
....................................................................................................................................GAAACCGTCCAAAACTGAGGCT.......................................................	22	1	22.00	22	3	11	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0
.................................................................................CTTAGTTTTAGACGTGTTTTGG..........................................................................................................	22	1	22.00	22	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	4	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	6	4	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAA..........................................................	20	1	21.00	21	1	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	1	0	2	0	1	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCAAT.....................................................	25	1	19.00	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	3	0	0	0	0	0	0	1	2	1	4	3
...................................................................................................................................TGAAACCGTCCAAAACTGAGGAAA......................................................	24	2	18.00	36	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	2	1	0	1	0	0	0	0	0	0	0	1	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	3	7	0	0	0	0	0	0	3	1	0	2	5
....................................................................................................................................GAAACCGTCCAAAACTGAG..........................................................	19	1	17.00	17	0	1	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................AAACCGTCCAAAACTGAGG.........................................................	19	1	16.00	16	0	2	9	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	1	1	0	0	0
.................................................................................CTTAGTTTTAGACGTGTTTTGGT.........................................................................................................	23	1	16.00	16	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGTT.......................................................	23	1	15.00	15	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0	0	0	1	1	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	2	0	0	1	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGT...........................................................	19	1	15.00	15	1	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCTC......................................................	24	1	14.00	14	4	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	2	0	0	0	0
......................................................................................................................................AACCGTCCAAAACTGAGGC........................................................	19	1	13.00	13	1	6	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................CTTAGTTTTAGACGTGTTTTGGTC........................................................................................................	24	1	10.00	10	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	1	1	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGTTA......................................................	24	1	10.00	10	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	1	0	0	0	3	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGTT........................................................	22	1	9.00	9	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	4	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCAAG.....................................................	25	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	2	0	1	2
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCAAC.....................................................	25	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	3	0	0	0	0	0	1
...................................................................................................................................TGAAACCGTCCAAAACTGC...........................................................	19	1	8.00	8	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................TTGAAACCGTCCAAAACTGAGGC........................................................	23	1	8.00	8	1	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
........................................................................................................GTGCTTG-A-AG--TT-TTGTTCCGAT..............................................................................	22	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................GAAACCGTCCAAAACTGAGGT........................................................	21	1	7.00	7	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	1	0	0	0	1	0	0	0	0	0
....................................................................................................................................GAAACCGTCCAAAACTGAGGCA.......................................................	22	1	6.00	6	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	1	0	1
...................................................................................................................................TGAAACCGTCCAAAACTGAGGAT.......................................................	23	1	6.00	6	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAAA.........................................................	21	2	5.50	11	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	4	0	0	1	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGACC.........................................................	21	1	5.00	5	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.................................................................................CTTAGTTTTAGACGTGTTTTGGTGT.......................................................................................................	25	1	5.00	5	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1
....................................................................................................................................GAAACCGTCCAAAACTGAGGCC.......................................................	22	1	5.00	5	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0
......................................................................................................................................AACCGTCCAAAACTGAGG.........................................................	18	1	5.00	5	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCTCC.....................................................	25	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	1	0	1	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGAA........................................................	22	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCCG......................................................	24	1	5.00	5	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	1
.....................................................................................................................................AAACCGTCCAAAACTGAG..........................................................	18	1	4.00	4	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGCT........................................................	22	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................CTTAGTTTTAGACGTGTTTTG...........................................................................................................	21	1	4.00	4	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

ACA-------------------------------------------------------------AAATGCCCACAATGGATCTTAGTTTTAGACGTGTTTTGGTGTGCTTGGG-AG--TT-TTGTTCCGATTGAAACCGTCCAAAACTGAGGCCAATTGT-GAGGCGAAAGCATCCAGAAGG---AA-A------------A-------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...................................................................................................................................TGAAACCGTCCAAAACTGAGGC........................................................	22	1	18576.00	18576	1725	25	4641	9660	468	2057
...................................................................................................................................TGAAACCGTCCAAAACTGAGG.........................................................	21	1	15976.00	15976	1865	2	3791	8015	20	2283
...................................................................................................................................TGAAACCGTCCAAAACTGAG..........................................................	20	1	760.00	760	131	0	155	351	1	122
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCT.......................................................	23	1	487.00	487	100	0	110	231	3	43
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCA.......................................................	23	1	296.00	296	52	0	81	144	0	19
...................................................................................................................................TGAAACCGTCCAAAACTGAGGT........................................................	22	1	259.00	259	14	0	57	165	0	23
....................................................................................................................................GAAACCGTCCAAAACTGAGG.........................................................	20	1	135.00	135	121	0	2	10	0	2
....................................................................................................................................GAAACCGTCCAAAACTGAGGC........................................................	21	1	129.00	129	116	0	2	10	0	1
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCTT......................................................	24	1	122.00	122	11	0	30	69	0	12
...................................................................................................................................TGAAACCGTCCAAAACTGA...........................................................	19	1	99.00	99	8	0	30	56	0	5
...................................................................................................................................TGAAACCGTCCAAAACTGAGGA........................................................	22	1	83.00	83	7	0	21	49	1	5
...................................................................................................................................TGAAACCGTCCAAAACTGAGGTT.......................................................	23	1	37.00	37	1	0	7	28	0	1
...................................................................................................................................TGAAACCGTCCAAAACTGAGT.........................................................	21	1	27.00	27	0	0	7	19	0	1
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCC.......................................................	23	1	27.00	27	2	0	8	13	2	2
...................................................................................................................................TGAAACCGTCCAAAACTGAGA.........................................................	21	1	26.00	26	4	0	6	14	0	2
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCG.......................................................	23	1	22.00	22	1	0	5	15	0	1
...................................................................................................................................TGAAACCGTCCAAAACTGAGC.........................................................	21	1	21.00	21	0	0	3	17	0	1
.................................................................................CTTAGTTTTAGACGTGTTTTGGT.........................................................................................................	23	1	16.00	16	1	0	4	4	0	7
.................................................................................CTTAGTTTTAGACGTGTTTTGG..........................................................................................................	22	1	12.00	12	3	0	1	5	0	3
.....................................................................................................................................AAACCGTCCAAAACTGAGGC........................................................	20	1	12.00	12	7	0	2	2	1	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCAT......................................................	24	1	11.00	11	1	0	1	7	0	2
....................................................................................................................................GAAACCGTCCAAAACTGAGGCT.......................................................	22	1	10.00	10	7	0	0	2	1	0
.....................................................................................................................................AAACCGTCCAAAACTGAGG.........................................................	19	1	9.00	9	5	0	2	2	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCTTT.....................................................	25	1	9.00	9	1	0	2	4	0	2
....................................................................................................................................GAAACCGTCCAAAACTGAG..........................................................	19	1	8.00	8	8	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGG........................................................	22	1	7.00	7	3	0	1	3	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCCT......................................................	24	1	7.00	7	0	0	3	4	0	0
..................................................................................................................................TTGAAACCGTCCAAAACTGAGG.........................................................	22	1	4.00	4	3	0	1	0	0	0
......................................................................................................................................AACCGTCCAAAACTGAGG.........................................................	18	1	4.00	4	2	0	0	2	0	0
....................................................................................................................................GAAACCGTCCAAAACTGAGGT........................................................	21	1	4.00	4	4	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGT...........................................................	19	1	4.00	4	0	0	2	2	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCCA......................................................	24	1	3.00	3	0	0	0	3	0	0
......................................................................................................................................AACCGTCCAAAACTGAGGC........................................................	19	1	3.00	3	1	0	0	0	2	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGAA.......................................................	23	1	2.00	2	0	0	0	2	0	0

droGri2

-------------------------------------------------------------------TACCCACAATGGATCTTAGTTTTAGACGTGTTTTGGTGTGCTTGGG-AG--TT-TTGTTCCGATTGAAACCGTCCAAAACTGAGGCCAATTGT-GTGGTAAAAGCATCCAA-------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
...................................................................................................................................TGAAACCGTCCAAAACTGAGGC........................................................	22	1	506.00	506	281	225
...................................................................................................................................TGAAACCGTCCAAAACTGAGG.........................................................	21	1	261.00	261	135	126
....................................................................................................................................GAAACCGTCCAAAACTGAGGC........................................................	21	1	28.00	28	28	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCT.......................................................	23	1	13.00	13	9	4
....................................................................................................................................GAAACCGTCCAAAACTGAGG.........................................................	20	1	10.00	10	10	0
...................................................................................................................................TGAAACCGTCCAAAACTGAG..........................................................	20	1	8.00	8	7	1
...................................................................................................................................TGAAACCGTCCAAAACTGAGGT........................................................	22	1	4.00	4	3	1
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCA.......................................................	23	1	2.00	2	2	0
....................................................................................................................................GAAACCGTCCAAAACTGAGGCA.......................................................	22	1	1.00	1	1	0
...................................................................................................................................TGAAACCGTCCAAAACTGA...........................................................	19	1	1.00	1	1	0
..................................................................................................................................TTGAAACCGTCCAAAACTGAGGC........................................................	23	1	1.00	1	1	0
..................................................................................TTAGTTTTAGACGTGTTTTGGT.........................................................................................................	22	1	1.00	1	1	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGATG......................................................	24	1	1.00	1	1	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGC.........................................................	21	1	1.00	1	0	1

droAna3

AT-------------------------------------------------------------ATACTGCCTACAATGGCCCTTAGTTTTCGACGTGTTTTGGTGTGCAGGGG-AG--TT-CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCTAA-------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...................................................................................................................................TGAAACCGTCCAAAACTGAGG.........................................................	21	1	35131.00	35131	1576	263	33	5855	2853	24551
...................................................................................................................................TGAAACCGTCCAAAACTGAGGC........................................................	22	1	29697.00	29697	1230	960	81	6643	1905	18878
...................................................................................................................................TGAAACCGTCCAAAACTGAG..........................................................	20	1	1437.00	1437	139	4	0	441	207	646
...................................................................................................................................TGAAACCGTCCAAAACTGAGGA........................................................	22	1	634.00	634	6	3	1	39	15	570
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCA.......................................................	23	1	483.00	483	66	57	2	147	24	187
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCT.......................................................	23	1	374.00	374	55	11	0	111	36	161
...................................................................................................................................TGAAACCGTCCAAAACTGAGT.........................................................	21	1	297.00	297	0	0	0	16	31	250
...................................................................................................................................TGAAACCGTCCAAAACTGAGGT........................................................	22	1	228.00	228	9	5	1	69	33	111
...................................................................................................................................TGAAACCGTCCAAAACTGAGA.........................................................	21	1	226.00	226	1	1	0	9	31	184
...................................................................................................................................TGAAACCGTCCAAAACTGA...........................................................	19	1	168.00	168	11	0	0	49	2	106
....................................................................................................................................GAAACCGTCCAAAACTGAGG.........................................................	20	1	158.00	158	118	0	0	5	3	32
....................................................................................................................................GAAACCGTCCAAAACTGAGGC........................................................	21	1	132.00	132	93	0	0	14	3	22
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCTT......................................................	24	1	107.00	107	2	1	0	20	5	79
.................................................................................CTTAGTTTTCGACGTGTTTTGGT.........................................................................................................	23	1	92.00	92	1	2	0	6	5	78
...................................................................................................................................TGAAACCGTCCAAAACTGAGC.........................................................	21	1	91.00	91	0	1	0	28	6	56
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCG.......................................................	23	1	35.00	35	1	0	0	5	1	28
...................................................................................................................................TGAAACCGTCCAAAACTGAT..........................................................	20	1	24.00	24	0	0	0	0	2	22
...................................................................................................................................TGAAACCGTCCAAAACTGAGGG........................................................	22	1	15.00	15	4	0	0	1	2	8
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCC.......................................................	23	1	15.00	15	0	2	0	5	2	6
.....................................................................................................................................AAACCGTCCAAAACTGAGGC........................................................	20	1	14.00	14	8	1	0	3	0	2
....................................................................................................................................GAAACCGTCCAAAACTGAG..........................................................	19	1	13.00	13	9	0	0	0	0	4
.....................................................................................................................................AAACCGTCCAAAACTGAGG.........................................................	19	1	11.00	11	4	0	0	1	0	6
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCAT......................................................	24	1	9.00	9	2	1	0	3	2	1
...................................................................................................................................TGAAACCGTCCAAAACTGAGGAA.......................................................	23	1	8.00	8	1	1	0	0	1	5
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCTTT.....................................................	25	1	7.00	7	0	0	0	2	1	4
...................................................................................................................................TGAAACCGTCCAAAACTGAGGTT.......................................................	23	1	7.00	7	0	0	0	3	0	4
...................................................................................................................................TGAAACCGTCCAAAACTG............................................................	18	1	6.00	6	0	1	0	5	0	0
....................................................................................................................................GAAACCGTCCAAAACTGAGGCA.......................................................	22	1	5.00	5	5	0	0	0	0	0
.................................................................................CTTAGTTTTCGACGTGTTTTGG..........................................................................................................	22	1	5.00	5	1	0	0	0	2	2
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCATT.....................................................	25	1	4.00	4	0	0	0	1	0	3
......................................................................................................................................AACCGTCCAAAACTGAGGC........................................................	19	1	3.00	3	3	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCCT......................................................	24	1	3.00	3	0	0	0	0	0	3
...................................................................................................................................TGAAACCGTCCAAAACTGAGAA........................................................	22	1	3.00	3	0	0	0	0	0	3
....................................................................................................................................GAAACCGTCCAAAACTGAGGCT.......................................................	22	1	3.00	3	3	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCTG......................................................	24	1	3.00	3	0	0	0	3	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAC..........................................................	20	1	3.00	3	1	0	0	2	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGTA.......................................................	23	1	3.00	3	1	0	1	0	0	1
...................................................................................................................................TGAAACCGTCCAAAACTGAGAT........................................................	22	1	3.00	3	0	0	0	0	2	1
..................................................................................................................................TTGAAACCGTCCAAAACTGAGG.........................................................	22	1	3.00	3	3	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGGC..........................................................	20	1	3.00	3	0	0	0	0	0	3
..................................................................................................................................TTGAAACCGTCCAAAACTGAGGC........................................................	23	1	3.00	3	3	0	0	0	0	0
.........................................................................................................................................................CAACTGT-GAGGCGTGAGCATCTA................................	23	1	2.00	2	0	0	0	0	0	2

droBip1

----------------------------------------------------------------TATTGCCCACAATGGTCCTTAGTTTTCGACGTGTTTTGGTGTGCAGGGG-AG--TT-CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCTAACCAA---------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ATC--------------------------------------------------TCCATACAGAGTGATGTCCACAATGAACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TT-CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCGTCTACC------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GCC-----------------------------------TT--AAAATGTCA-----AAGTAGAGTGTGGCCCGCAATGAACCTTAGTTTTAGACGTGTTTTGGTGTG-TGGGG-AG--CG-ATATTCCGATTGAAACCGTCCAAAACTGAGGCTAACTGT-GAGGCGTGAGCGTCTAACCAA---AACAGCGATATTAACGA-------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

A---------------------------------------AGAACATCTTT-----ATATAGAGTGTTGCCCACAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TT-CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCTAACAAA------AGCGATACTAAC---------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ATC-----------------------------------AAAGAAAATCTTT-----AAATAGAGTGTTGCCCACAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TT-CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCCAACCAA---AA-AACGATACTAACGA-------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ATC-----------------------------------CACGAA-ATCCCA-----GCGTAGAATGATGTCCACAATGAACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TT-GAATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GCGGCGTGAGCATCTAACCAA---AA-TGCGATACCAAC---------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ATC-----------------------------------CACGAAAATCCTA-----ATGTAGCGTGTTGTCCACAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TT-CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCTAACCAA---AG----------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

AG---TGTCCGAGTAAAGTG-CCT------TGTTCATCCAAGAATACCCTG-----ATGTGGAGTGTTGTCCACAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TT-CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGAGAGCATCTGACCAA---------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

GT-------------------------------TCATCCAAGAATATATTATATCC--GT--AGTGTTGTCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TT-CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGCGAGCATCTATCCAA---AA-AGCGATACCAACGA-------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...................................................................................................................................TGAAACCGTCCAAAACTGAGG.........................................................	21	1	182213.00	182213	0	0	0	0	57	3	0	0	0	0	2	0	0	0	103	3	1	28	3	0	0	0	2	0	0	35	4	4	42	41	1904	1380	12	9	1	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	94	5	0	0	1	0	0	0	1	1	5	160	3	5	764	40	134	0	0	5	6	1157	9	0	0	12	0	6	4	11	4	4	0	1	32	94	1447	1466	18	919	5	1343	769	2862	68	824	123	806	1025	0	0	0	0	0	0	0	0	0	0	5	0	0	0	1	1	0	0	0	0	3	0	0	0	0	1	0	0	0	0	0	0	2	0	0	0	2476	3186	0	1803	9	5	1735	2196	58	2600	55	2713	28	3435	386	22	0	14	0	0	3824	0	1	0	0	0	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	7	33	11	4	11	2	0	5	0	14	5	0	0	4	30	10	0	0	9	7	0	238	5956	135	1	1	5	1954	5386	3	894	0	0	0	0	2	2843	0	0	0	0	0	2	0	0	8	1	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	30	15364	13339	13647	16002	4	23	1581	744	2	165	2	1	2	11	3927	1	2523	3604	0	0	0	3	14	4	13	11	3	0	2	0	1	0	1	0	1081	43841	1901	552	1333	1181	1139	8	0	132	1	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGC........................................................	22	1	129008.00	129008	0	0	0	0	64	1	0	0	0	1	0	5	0	0	190	5	0	46	5	0	0	0	3	0	0	22	2	3	37	60	2197	1791	9	8	0	16	1	0	0	1	0	0	8	0	1	9	1	0	0	1	2	0	4	0	0	0	2	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	114	8	0	0	0	0	0	0	5	14	22	211	12	32	294	34	175	1	5	73	48	2274	8	0	0	1	0	2	6	13	25	5	1	1	35	121	1322	1921	14	762	3	1601	1420	6263	110	788	120	740	795	0	0	0	0	0	0	0	0	0	0	16	0	1	0	0	0	0	0	4	0	11	0	0	4	0	0	0	0	1	0	0	0	0	0	3	0	2072	2565	0	1896	14	4	2399	1995	64	2374	39	1875	35	3182	468	14	0	4	0	0	5149	1	0	4	1	0	0	0	2	0	1	0	0	1	0	0	0	4	0	0	0	3	0	0	0	0	0	0	3	14	14	54	113	43	60	7	10	33	6	104	16	0	0	18	17	13	0	0	98	124	0	436	3840	82	5	2	13	2552	3595	4	900	0	0	0	0	2	3082	1	0	0	0	0	2	0	0	27	2	3	1	3	1	0	1	7	0	1	1	0	0	2	0	0	2	1	12	8245	8832	7220	7907	7	349	2344	1050	1	48	1	2	3	8	3966	1	2038	3948	1	1	0	1	15	10	5	46	3	0	1	4	2	3	0	0	509	15558	940	338	969	587	461	12	0	135	2	2	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCATC.....................................................	25	1	53707.00	53707	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35998	17709	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGATC......................................................	24	1	18047.00	18047	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13237	4810	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAG..........................................................	20	1	12436.00	12436	0	0	0	0	2	1	0	0	0	0	0	0	1	0	8	0	0	4	2	0	0	0	0	0	0	1	0	1	5	3	216	151	1	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	2	0	0	0	0	0	0	0	0	0	20	0	0	37	4	4	0	0	1	2	151	1	0	0	0	0	1	0	1	0	0	0	0	2	10	153	156	1	106	4	142	41	102	3	63	8	82	105	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	237	377	0	156	0	1	164	168	3	226	6	309	3	338	20	0	0	0	0	0	392	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	13	220	7	0	0	1	46	569	0	40	0	0	0	0	0	98	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	1	0	676	540	815	1033	0	1	50	19	0	23	0	0	1	0	210	0	116	158	0	0	0	0	2	1	0	0	0	0	0	0	0	1	0	0	105	3439	81	23	37	39	43	1	0	3	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCA.......................................................	23	1	3204.00	3204	0	0	0	0	1	0	0	0	0	0	0	0	0	0	2	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	4	3	0	0	0	0	0	0	0	0	0	16	0	1	30	1	8	0	0	0	1	83	1	0	0	1	0	0	0	2	0	0	1	0	1	2	61	15	1	8	0	18	4	41	0	39	5	43	39	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	124	139	0	126	1	1	110	96	2	99	2	84	1	186	7	0	0	0	0	0	265	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	1	0	0	0	0	71	39	0	0	0	0	0	5	53	2	0	0	0	31	31	0	9	0	0	0	0	0	28	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	189	217	170	197	0	0	41	19	0	0	0	0	0	0	88	0	41	59	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	188	14	3	8	7	3	0	0	2	0	0	0
....................................................................................................................................GAAACCGTCCAAAACTGAGGC........................................................	21	1	1940.00	1940	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	44	44	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	3	51	77	0	30	0	57	56	226	3	37	9	30	43	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	131	144	0	86	0	2	93	54	1	48	0	98	1	257	9	0	0	0	0	0	229	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	1	3	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	5	7	8	0	1	2	2	0	0	0	0	0	0	5	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	10	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCT.......................................................	23	1	1772.00	1772	0	0	0	0	1	0	0	0	0	0	0	0	0	0	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1	0	0	7	0	5	0	0	0	0	48	0	0	0	0	0	0	0	0	0	0	0	0	0	1	49	5	0	3	0	15	1	17	0	18	1	24	28	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	65	75	0	37	0	0	46	39	0	77	1	58	0	104	1	0	0	0	0	0	152	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	9	5	0	0	0	0	0	8	53	0	0	0	1	11	35	0	3	0	0	0	0	0	16	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	81	69	78	96	0	1	11	9	0	3	0	1	0	0	47	0	20	29	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	262	5	2	5	4	5	0	0	1	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGA........................................................	22	1	1754.00	1754	0	0	0	0	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	1	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14	19	0	20	0	25	19	86	2	14	0	8	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17	29	0	11	0	1	20	45	0	26	0	35	0	49	13	0	0	0	0	0	83	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	282	86	0	0	1	0	0	2	44	0	0	0	0	7	47	0	3	0	0	0	0	1	26	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	94	86	107	133	0	0	3	2	0	1	0	0	0	0	14	0	8	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	198	3	2	9	2	4	0	0	1	0	0	0
....................................................................................................................................GAAACCGTCCAAAACTGAGG.........................................................	20	1	1545.00	1545	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	1	0	0	0	0	0	0	5	47	59	0	32	0	48	28	77	2	37	5	46	34	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	122	160	0	83	0	1	67	67	2	61	1	128	0	194	9	0	0	0	0	0	137	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	3	0	0	0	0	1	3	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	15	10	9	0	0	2	0	0	1	0	0	0	0	3	0	2	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	21	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGA...........................................................	19	1	1242.00	1242	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	5	1	16	22	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15	2	0	4	0	3	2	3	0	6	1	15	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	32	54	0	9	1	0	11	26	1	16	6	48	1	40	12	0	0	0	0	0	29	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	22	0	0	0	0	1	83	0	3	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	61	41	81	134	0	0	1	1	0	2	0	0	0	0	10	0	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	365	4	0	0	1	0	0	0	0	0	0	0
.................................................................................CTTAGTTTTCGACGTGTTTTGGT.........................................................................................................	23	1	1161.00	1161	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	1	0	0	4	0	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	7	0	2	0	4	0	8	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17	19	0	14	4	3	1	12	3	6	0	9	15	22	18	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	1	0	0	0	0	1	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	10	10	0	2	0	0	0	0	1	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	76	89	62	93	0	33	21	11	0	0	0	1	0	0	12	0	14	33	0	0	0	0	0	2	1	4	4	0	0	0	0	1	0	0	13	408	13	4	10	6	9	2	0	3	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGT........................................................	22	1	934.00	934	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	3	0	0	1	0	2	0	0	0	0	17	0	0	0	0	0	0	0	0	0	0	0	0	0	1	13	5	0	9	0	5	6	14	0	5	2	12	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19	17	0	19	0	0	18	13	1	23	0	16	0	25	2	0	0	0	0	0	31	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	3	0	1	1	0	0	0	0	0	0	0	0	58	11	0	0	0	0	0	0	19	1	0	0	0	9	35	0	7	0	0	0	0	0	11	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43	41	45	54	0	2	13	3	0	4	0	0	0	0	14	0	15	20	0	0	0	0	0	0	0	1	0	0	0	1	0	1	0	0	7	202	6	0	9	1	3	0	0	3	0	0	0
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....................................................................................................................................GAAACCGTCCAAAACTGAGGCA.......................................................	22	1	52.00	52	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	1	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	5	0	3	0	0	5	3	0	2	0	4	0	9	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAT..........................................................	20	1	49.00	49	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	1	0	26	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	1	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................GAAACCGTCCAAAACTGAGGATC......................................................	23	2	48.00	96	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	70	26	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGAA.......................................................	23	1	45.00	45	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	4	0	0	0	0	0	1	0	1	0	1	0	3	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	3	5	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGATT.........................................................	21	1	43.00	43	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	6	0	9	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCCTC.....................................................	25	1	41.00	41	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	27	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGTT.......................................................	23	1	33.00	33	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	3	2	0	2	0	2	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0

droSim2

ATC---------------------------TGTTCATCCAAGAATGCATTGTATCC--GT--AGTGTTGTCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TT-CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCTATCCAA---AA-AGCGATACCAACCA-------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...................................................................................................................................TGAAACCGTCCAAAACTGAGGC........................................................	22	1	176950.00	176950	170635	3400	2093	169	7	190	7	12	198	110	0	120	0	1	0	2	6
...................................................................................................................................TGAAACCGTCCAAAACTGAGG.........................................................	21	1	30364.00	30364	28649	912	107	255	7	365	6	8	34	11	1	9	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCT.......................................................	23	1	10399.00	10399	10084	268	33	12	0	0	0	0	0	1	0	0	0	1	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGA...........................................................	19	1	6248.00	6248	5310	135	15	1	15	771	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAG..........................................................	20	1	6132.00	6132	4485	120	16	21	29	1456	2	0	1	2	0	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCC.......................................................	23	1	2383.00	2383	1780	44	7	1	8	543	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCTT......................................................	24	1	1433.00	1433	1361	63	8	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTG............................................................	18	1	1407.00	1407	1051	30	4	0	2	320	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCA.......................................................	23	1	672.00	672	632	20	3	9	0	0	0	0	2	2	0	1	0	3	0	0	0
....................................................................................................................................GAAACCGTCCAAAACTGAGGC........................................................	21	1	495.00	495	471	6	7	10	0	1	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGG...........................................................	19	2	380.00	760	735	21	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCG.......................................................	23	1	268.00	268	253	13	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGT........................................................	22	1	266.00	266	257	5	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGG........................................................	22	1	223.00	223	203	11	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................AAACCGTCCAAAACTGAGGC........................................................	20	1	159.00	159	148	4	6	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGA........................................................	22	1	113.00	113	108	2	1	0	0	0	0	0	0	1	0	1	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAC..........................................................	20	2	96.50	193	187	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................GAAACCGTCCAAAACTGAGG.........................................................	20	1	89.00	89	62	1	0	25	0	1	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGT.........................................................	21	1	66.00	66	59	1	2	4	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGA.........................................................	21	1	60.00	60	58	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCCT......................................................	24	1	59.00	59	57	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGAA.......................................................	23	1	59.00	59	57	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGC.........................................................	21	1	39.00	39	38	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAA..........................................................	20	1	38.00	38	37	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................AACCGTCCAAAACTGAGGC........................................................	19	1	37.00	37	36	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................AAACCGTCCAAAACTGAGG.........................................................	19	1	26.00	26	21	1	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCAT......................................................	24	1	23.00	23	22	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................GAAACCGTCCAAAACTGAG..........................................................	19	1	23.00	23	8	0	0	1	0	14	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................GAAACCGTCCAAAACTGA...........................................................	18	1	20.00	20	8	0	0	0	0	12	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................GAAACCGTCCAAAACTGAGGCC.......................................................	22	1	15.00	15	4	0	0	0	0	11	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCCA......................................................	24	1	14.00	14	3	0	0	0	0	11	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCTC......................................................	24	1	13.00	13	12	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................GAAACCGTCCAAAACTGAGGCT.......................................................	22	1	12.00	12	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCAC......................................................	24	1	9.00	9	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................TTGAAACCGTCCAAAACTGAGGC........................................................	23	1	9.00	9	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................ACCGTCCAAAACTGAGGC........................................................	18	1	9.00	9	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGT...........................................................	19	3	8.00	24	24	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCTG......................................................	24	1	7.00	7	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................AACCGTCCAAAACTGAGG.........................................................	18	1	6.00	6	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCCC......................................................	24	1	6.00	6	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAT..........................................................	20	1	6.00	6	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTA............................................................	18	2	6.00	12	11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................AAACCGTCCAAAACTGAGGCT.......................................................	21	1	5.00	5	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................CTTAGTTTTCGACGTGTTTTGGT.........................................................................................................	23	1	4.00	4	1	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGTT.......................................................	23	1	4.00	4	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................AACCGTCCAAAACTGAGGCT.......................................................	20	1	3.00	3	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................GAAACCGTCCAAAACTGAGGCA.......................................................	22	1	3.00	3	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................CCGTCCAAAACTGAGGCT.......................................................	18	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGAT.......................................................	23	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................AAACCGTCCAAAACTGAG..........................................................	18	1	3.00	3	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCTTT.....................................................	25	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGAG........................................................	22	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................GAAACCGTCCAAAACTGAGGT........................................................	21	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGAA........................................................	22	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................CTTAGTTTTCGACGTGTTT.............................................................................................................	19	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................GAAACCGTCCAAAACTGAGGCTT......................................................	23	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAAA.........................................................	21	7	1.29	9	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................ACCGTCCAAAACTGAGGCT.......................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................CTTAGTTTTCGACGTGTTTTGG..........................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

ATC---------------------------TGTTCATCCAAGAATGCATTGTATCC--GT--AGTGTTGTCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TT-CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCTATCCAA---AA-AGAGATACCAACCA-------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...................................................................................................................................TGAAACCGTCCAAAACTGAGG.........................................................	21	1	33768.00	33768	1074	3310	94	29290
...................................................................................................................................TGAAACCGTCCAAAACTGAGGC........................................................	22	1	28451.00	28451	752	2496	799	24404
...................................................................................................................................TGAAACCGTCCAAAACTGAG..........................................................	20	1	1556.00	1556	101	201	2	1252
...................................................................................................................................TGAAACCGTCCAAAACTGAGGA........................................................	22	1	388.00	388	6	22	2	358
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCA.......................................................	23	1	355.00	355	25	41	0	289
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCT.......................................................	23	1	281.00	281	18	23	0	240
...................................................................................................................................TGAAACCGTCCAAAACTGA...........................................................	19	1	160.00	160	6	2	0	152
...................................................................................................................................TGAAACCGTCCAAAACTGAGGT........................................................	22	1	105.00	105	1	16	0	88
....................................................................................................................................GAAACCGTCCAAAACTGAGG.........................................................	20	1	103.00	103	68	5	0	30
...................................................................................................................................TGAAACCGTCCAAAACTGAGA.........................................................	21	1	87.00	87	3	4	0	80
....................................................................................................................................GAAACCGTCCAAAACTGAGGC........................................................	21	1	65.00	65	55	1	1	8
.................................................................................CTTAGTTTTCGACGTGTTTTGGT.........................................................................................................	23	1	57.00	57	1	11	18	27
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCTT......................................................	24	1	52.00	52	5	4	0	43
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCC.......................................................	23	1	44.00	44	3	1	1	39
...................................................................................................................................TGAAACCGTCCAAAACTGAGT.........................................................	21	1	39.00	39	12	3	0	24
...................................................................................................................................TGAAACCGTCCAAAACTGAGC.........................................................	21	1	33.00	33	1	6	0	26
.....................................................................................................................................AAACCGTCCAAAACTGAGG.........................................................	19	1	28.00	28	8	1	0	19
.................................................................................CTTAGTTTTCGACGTGTTTTGG..........................................................................................................	22	1	23.00	23	1	6	2	14
.....................................................................................................................................AAACCGTCCAAAACTGAGGC........................................................	20	1	18.00	18	3	0	0	15
...................................................................................................................................TGAAACCGTCCAAAACTG............................................................	18	1	15.00	15	1	0	0	14
...................................................................................................................................TGAAACCGTCCAAAACTGAGGTT.......................................................	23	1	12.00	12	0	0	0	12
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCG.......................................................	23	1	10.00	10	0	1	0	9
....................................................................................................................................GAAACCGTCCAAAACTGAG..........................................................	19	1	7.00	7	6	0	0	1
....................................................................................................................................GAAACCGTCCAAAACTGAGGCT.......................................................	22	1	6.00	6	4	1	0	1
....................................................................................................................................GAAACCGTCCAAAACTGAGGCA.......................................................	22	1	5.00	5	4	0	0	1
..................................................................................TTAGTTTTCGACGTGTTTTGGT.........................................................................................................	22	1	4.00	4	0	0	0	4
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCCT......................................................	24	1	4.00	4	0	0	0	4
...................................................................................................................................TGAAACCGTCCAAAACTGAA..........................................................	20	1	3.00	3	0	1	0	2
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCAT......................................................	24	1	3.00	3	0	0	0	3
...................................................................................................................................TGAAACCGTCCAAAACTGAGCA........................................................	22	1	2.00	2	1	0	0	1
...................................................................................................................................TGAAACCGTCCAAAACTGAGGAA.......................................................	23	1	2.00	2	0	2	0	0
..................................................................................................................................TTGAAACCGTCCAAAACTGAGGC........................................................	23	1	2.00	2	2	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGG........................................................	22	1	2.00	2	0	0	0	2
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCTTT.....................................................	25	1	2.00	2	0	1	0	1
.................................................................................CTTAGTTTTCGACGTGTTTTG...........................................................................................................	21	1	2.00	2	1	1	0	0
......................................................................................................................................AACCGTCCAAAACTGAGGC........................................................	19	1	1.00	1	1	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGGT.......................................................	23	1	1.00	1	0	0	0	1
.......................................................................................................................................ACCGTCCAAAACTGAGGC........................................................	18	1	1.00	1	1	0	0	0

droYak3

GT-------------------------------TCATCCAAGAATATATCATATCC--GT--AGTGTTGTCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TT-ATATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCAACTATCCAA---AC-AGCGATACCAACGA-------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...................................................................................................................................TGAAACCGTCCAAAACTGAGGC........................................................	22	2	49250.50	98501	81795	962	993	41	3337	10461	906	2	0	4	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGG.........................................................	21	2	11481.50	22963	9843	1012	25	2	2611	8336	1134	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCT.......................................................	23	2	2394.00	4788	4466	32	3	0	58	217	12	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAG..........................................................	20	2	938.50	1877	1184	58	0	0	124	451	60	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGA...........................................................	19	2	593.00	1186	1124	9	0	0	16	37	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCC.......................................................	23	2	492.00	984	947	2	2	0	11	21	1	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCA.......................................................	23	2	304.00	608	233	22	0	0	78	260	15	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCTT......................................................	24	2	268.00	536	508	2	0	0	6	20	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTG............................................................	18	2	192.00	384	383	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................GAAACCGTCCAAAACTGAGGC........................................................	21	2	137.00	274	189	76	1	0	5	3	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGG...........................................................	19	2	94.00	188	188	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGT........................................................	22	2	68.50	137	57	3	1	0	17	54	5	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCG.......................................................	23	2	67.00	134	120	0	1	0	5	8	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGG........................................................	22	2	63.50	127	119	3	0	0	3	2	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGA........................................................	22	2	63.00	126	45	6	5	0	15	54	1	0	0	0	0
.....................................................................................................................................AAACCGTCCAAAACTGAGGC........................................................	20	2	45.00	90	80	8	0	0	1	1	0	0	0	0	0
....................................................................................................................................GAAACCGTCCAAAACTGAGG.........................................................	20	2	42.50	85	12	66	0	0	1	5	1	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAC..........................................................	20	2	25.50	51	50	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGT.........................................................	21	2	22.00	44	4	0	0	0	3	37	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGC.........................................................	21	2	18.00	36	13	0	0	0	1	22	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGA.........................................................	21	2	18.00	36	9	2	0	0	5	19	1	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCCT......................................................	24	2	14.00	28	25	0	0	0	0	3	0	0	0	0	0
.................................................................................CTTAGTTTTCGACGTGTTTTGGT.........................................................................................................	23	2	13.00	26	4	2	3	2	7	7	1	0	0	0	0
......................................................................................................................................AACCGTCCAAAACTGAGGC........................................................	19	2	11.00	22	22	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCTC......................................................	24	2	9.50	19	17	1	0	0	1	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGAA.......................................................	23	2	8.00	16	14	0	0	0	0	2	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCAT......................................................	24	2	6.00	12	4	2	0	0	1	3	2	0	0	0	0
.....................................................................................................................................AAACCGTCCAAAACTGAGG.........................................................	19	2	5.50	11	3	5	0	0	0	3	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAA..........................................................	20	2	5.50	11	11	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................GAAACCGTCCAAAACTGAGGCT.......................................................	22	2	4.50	9	8	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCTTT.....................................................	25	2	4.00	8	5	0	0	0	1	2	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCAC......................................................	24	2	3.50	7	6	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................TTGAAACCGTCCAAAACTGAGGC........................................................	23	2	3.50	7	6	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCTG......................................................	24	2	3.00	6	5	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGC...........................................................	19	2	2.50	5	5	0	0	0	0	0	0	0	0	0	0
.................................................................................CTTAGTTTTCGACGTGTTTTGG..........................................................................................................	22	2	2.50	5	1	0	0	0	0	3	1	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGATT.........................................................	21	2	2.50	5	0	0	0	0	0	5	0	0	0	0	0
....................................................................................................................................GAAACCGTCCAAAACTGAG..........................................................	19	2	2.50	5	2	3	0	0	0	0	0	0	0	0	0
......................................................................................................................................AACCGTCCAAAACTGAGG.........................................................	18	2	2.50	5	4	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................AAACCGTCCAAAACTGAGGCT.......................................................	21	2	2.50	5	5	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................GAAACCGTCCAAAACTGAGGCC.......................................................	22	2	2.50	5	5	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGT...........................................................	19	2	2.50	5	5	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAT..........................................................	20	2	2.00	4	0	0	0	0	1	3	0	0	0	0	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGTA.......................................................	23	2	2.00	4	0	0	0	0	1	2	1	0	0	0	0

droEre2

ATCAGTGCCCAAGAAAAGTGACCTTCGAACTGTTCATCTAAGAATGTACCATATCC--GT--AGTGTTGTCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TT-CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCTATCCAA---AC-AGCGATACCAACGA-------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...................................................................................................................................TGAAACCGTCCAAAACTGAGGC........................................................	22	1	61985.00	61985	2116	341	6010	97	3947	49474	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGG.........................................................	21	1	59281.00	59281	2294	13	5443	7	4009	47515	0
...................................................................................................................................TGAAACCGTCCAAAACTGAG..........................................................	20	1	2015.00	2015	147	0	188	0	158	1522	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCA.......................................................	23	1	1063.00	1063	92	1	170	0	75	725	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGA........................................................	22	1	651.00	651	6	0	39	0	13	593	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCT.......................................................	23	1	408.00	408	46	0	44	0	34	284	0
....................................................................................................................................GAAACCGTCCAAAACTGAGGC........................................................	21	1	282.00	282	154	2	8	0	4	114	0
....................................................................................................................................GAAACCGTCCAAAACTGAGG.........................................................	20	1	255.00	255	161	0	7	0	5	82	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGT.........................................................	21	1	217.00	217	19	0	12	0	3	183	0
.................................................................................CTTAGTTTTCGACGTGTTTTGGT.........................................................................................................	23	1	195.00	195	1	3	10	3	13	165	0
...................................................................................................................................TGAAACCGTCCAAAACTGA...........................................................	19	1	140.00	140	6	0	8	0	3	123	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCC.......................................................	23	1	136.00	136	4	4	13	0	8	107	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGT........................................................	22	1	115.00	115	6	0	24	0	2	83	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGA.........................................................	21	1	73.00	73	5	0	10	0	3	55	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGC.........................................................	21	1	58.00	58	4	0	6	0	4	44	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCG.......................................................	23	1	55.00	55	2	0	5	0	6	42	0
.................................................................................CTTAGTTTTCGACGTGTTTTGG..........................................................................................................	22	1	46.00	46	5	0	1	0	13	27	0
.....................................................................................................................................AAACCGTCCAAAACTGAGG.........................................................	19	1	37.00	37	11	0	2	0	2	22	0
.....................................................................................................................................AAACCGTCCAAAACTGAGGC........................................................	20	1	30.00	30	11	0	4	0	0	15	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCTT......................................................	24	1	25.00	25	1	0	0	0	1	23	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGG........................................................	22	1	15.00	15	2	0	2	0	1	10	0
....................................................................................................................................GAAACCGTCCAAAACTGAG..........................................................	19	1	14.00	14	9	0	1	0	1	3	0
......................................................................................................................................AACCGTCCAAAACTGAGG.........................................................	18	1	12.00	12	1	0	0	0	0	11	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCAT......................................................	24	1	11.00	11	0	0	3	0	1	7	0
....................................................................................................................................GAAACCGTCCAAAACTGAGGCA.......................................................	22	1	10.00	10	5	0	0	0	0	5	0
...................................................................................................................................TGAAACCGTCCAAAACTGAT..........................................................	20	1	9.00	9	1	0	0	0	0	8	0
......................................................................................................................................AACCGTCCAAAACTGAGGC........................................................	19	1	8.00	8	2	0	0	0	0	6	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGAA.......................................................	23	1	7.00	7	0	0	3	0	0	4	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGTT.......................................................	23	1	6.00	6	0	0	2	0	0	4	0
....................................................................................................................................GAAACCGTCCAAAACTGAGGCT.......................................................	22	1	5.00	5	4	0	0	0	0	1	0
.......................................................................................................................................ACCGTCCAAAACTGAGGC........................................................	18	1	5.00	5	1	0	0	0	0	4	0
...................................................................................................................................TGAAACCGTCCAAAACTGATT.........................................................	21	1	5.00	5	0	0	3	0	0	2	0
.................................................................................CTTAGTTTTCGACGTGTTTTGGTA........................................................................................................	24	1	4.00	4	0	0	1	0	0	3	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCCT......................................................	24	1	4.00	4	0	0	0	0	1	3	0
...................................................................................................................................TGAAACCGTCCAAAACTG............................................................	18	1	4.00	4	1	0	0	0	0	3	0
.................................................................................CTTAGTTTTCGACGTGTTTTGGC.........................................................................................................	23	1	3.00	3	0	0	0	0	0	3	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGTA........................................................	22	1	3.00	3	0	0	0	0	0	3	0
...................................................................................................................................TGAAACCGTCCAAAACTGAGGCCA......................................................	24	1	3.00	3	0	0	0	0	0	3	0
.................................................................................CTTAGTTTTCGACGTGTTTTG...........................................................................................................	21	1	3.00	3	1	0	2	0	0	0	0
..................................................................................TTAGTTTTCGACGTGTTTTGGT.........................................................................................................	22	1	3.00	3	0	0	0	0	0	3	0
...................................................................................................................................TGAAACCGTCCAAAACTGG...........................................................	19	1	3.00	3	0	0	0	0	0	3	0
...................................................................................................................................TGAAACCGTCCAAAACTGGC..........................................................	20	4	2.25	9	0	0	0	0	0	9	0

dpe_9

scaffold_80:80400-80469 +

Known Ortholog

Canonical miRNA

intron

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-36.6	-36.6	-36.2