dpe_88

GTAACCGTGTTGAGGAAAGTGTTTCCCCCACCAAATGCACATTCGTGCTATATGGCAAACAGTTGATTTATGTTATTTTCTAATTCATAAGTCTCTTGTCTGCCATACAGCAAAATGTGTGCTCTATCCTGATGCATCCTATGCTGGCTTAGATCAGA *********************************.((((((...((((.(((((((.((((..((((((((..(((....))).))))))))..)))).))))))).))))....))))))**********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V111 male body	M042 female body	V042 embryo	V050 head	V057 head
..................................................TATGGCAAACAGTTGATTTATG......................................................................................	22	0	1	154.00	154	121	13	10	8	2
..................................................TATGGCAAACAGTTGATTTATGT.....................................................................................	23	0	1	53.00	53	50	2	0	1	0
.......................................................................................TAAGTCTCTTGTCTGCCATA...................................................	20	0	1	20.00	20	19	1	0	0	0
.......................................................................................TAAGTCTCTTGTCTGCCATACA.................................................	22	0	1	12.00	12	9	3	0	0	0
..................................................TATGGCAAACAGTTGATTTAT.......................................................................................	21	0	4	11.50	46	42	0	4	0	0
.......................................................................................TAAGTCTCTTGTCTGCCATAC..................................................	21	0	1	9.00	9	6	3	0	0	0
..................................................TATGGCAAACAGTTGATTTATGTC....................................................................................	24	1	1	7.00	7	7	0	0	0	0
.......................................................................................TAAGTCTCTTGTCTGCCAT....................................................	19	0	1	3.00	3	3	0	0	0	0
.......................................................................................TAAGTCTCTTGTCTGCCATT...................................................	20	1	1	3.00	3	3	0	0	0	0
.......................................................................................TAAGTCTCTTGTCTGCCATC...................................................	20	1	1	3.00	3	3	0	0	0	0
.......................................................................................TAAGTCTCTTGTCTGCCATACCT................................................	23	2	1	2.00	2	2	0	0	0	0
.......................................................................................TAAGTCTCTTGTCTGCCATCT..................................................	21	2	1	2.00	2	2	0	0	0	0
.......................................................................................TAAGTCTCTTGTCTGCCATCC..................................................	21	1	1	2.00	2	1	1	0	0	0
.......................................................................................TAAGTCTCTTGTCTGCCATACC.................................................	22	1	1	2.00	2	2	0	0	0	0
..................................................TATGTCAAACAGTTGATTTATG......................................................................................	22	1	1	1.00	1	1	0	0	0	0
..................................................TATGGCAAGCAGTTGATTTATGT.....................................................................................	23	1	1	1.00	1	1	0	0	0	0
..................................................TATGGCAAACCGTTGATTTATGT.....................................................................................	23	1	1	1.00	1	1	0	0	0	0
..................................................TATGGCAAACAGTTGATTTATGTTT...................................................................................	25	1	1	1.00	1	1	0	0	0	0
..................................................TATGGCAAACAGTTGATTTATT......................................................................................	22	1	4	1.00	4	2	2	0	0	0
.................................................CTATGGCAAACAGTTGATTTATG......................................................................................	23	1	1	1.00	1	1	0	0	0	0
........................................................................................AAGTCTCTTGTCTGCCATACA.................................................	21	0	1	1.00	1	0	1	0	0	0
.......................................................................................TAAGTCTCTTGTCTGCCCTT...................................................	20	2	1	1.00	1	1	0	0	0	0
..................................................TATGGCAAACAGTTGATTTATGTT....................................................................................	24	0	1	1.00	1	1	0	0	0	0
..................................................TATGGCAAACAGTTGATTTATGTCC...................................................................................	25	2	1	1.00	1	1	0	0	0	0
...........................................................................TTTTCCAATTCATAAGTCTCTTGTCTG........................................................	27	1	1	1.00	1	1	0	0	0	0
........................................................................................AAGTCTCTTGTCTGCCATT...................................................	19	1	1	1.00	1	0	1	0	0	0
..................................................TATGGCAACCAGTTGATTTATG......................................................................................	22	1	1	1.00	1	0	1	0	0	0
..................................................TATGGCAAGCAGTTGATTTATG......................................................................................	22	1	1	1.00	1	1	0	0	0	0
.......................................................................................TAAGTCTCTTGTCTGCCGTA...................................................	20	1	1	1.00	1	1	0	0	0	0
..................................................TATGGCAAACCGTTGATTTATG......................................................................................	22	1	1	1.00	1	0	0	1	0	0
.......................................................................................TAAGTCTCTTGTCTGCCATAA..................................................	21	1	1	1.00	1	1	0	0	0	0
..................................................TATGGCAAACAGTTGATTT.........................................................................................	19	0	4	0.50	2	2	0	0	0	0
.......................................................................................TAAGTCTCTTGTCTGCCATTT..................................................	21	2	2	0.50	1	1	0	0	0	0
..................................................TATGGCATACAGTTGATTTATGT.....................................................................................	23	1	3	0.33	1	1	0	0	0	0
..................................................TATGGCAAACAGTTGATTTA........................................................................................	20	0	4	0.25	1	1	0	0	0	0
................................................TATATGGCAAACAGTTGATT..........................................................................................	20	0	4	0.25	1	1	0	0	0	0
..................................................TAGGGCATACAGTTGATGTATG......................................................................................	22	3	4	0.25	1	0	0	1	0	0
.......................................................................................TAAGTCTCTTGTCTGCCCTTT..................................................	21	3	20	0.10	2	2	0	0	0	0
.......................................................................................TAAGTCTCTTGTCTGCCCGT...................................................	20	3	13	0.08	1	1	0	0	0	0
.......................................................................................TAAGTCTCTTGTCTGCCTTA...................................................	20	1	20	0.05	1	1	0	0	0	0
.......................................................................................TAAGTCTCTTGTCTGCCATCTC.................................................	22	3	20	0.05	1	1	0	0	0	0
.......................................................................................TAAGTCTCTTGTCTGCCTTTA..................................................	21	3	20	0.05	1	0	1	0	0	0
.......................................................................................TAAGTCTCTTGTCTGCCTTT...................................................	20	2	20	0.05	1	0	0	0	1	0

CATTGGCACAACTCCTTTCACAAAGGGGGTGGTTTACGTGTAAGCACGATATACCGTTTGTCAACTAAATACAATAAAAGATTAAGTATTCAGAGAACAGACGGTATGTCGTTTTACACACGAGATAGGACTACGTAGGATACGACCGAATCTAGTCT **********************************.((((((...((((.(((((((.((((..((((((((..(((....))).))))))))..)))).))))))).))))....))))))*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V111 male body	V057 head	V042 embryo
.....................................................................................................................ACACGAGATAGGACGACT.......................	18	2	7	0.29	2	2	0	0
...................................................................................................................GCACACGAGATAGGACGAC........................	19	2	5	0.20	1	0	1	0
............................................................................................................TCGTTTTACACCCGTGATAT..............................	20	3	20	0.05	1	0	0	1

Species	Coordinate	ID	Type	Alignment
droPer2	scaffold_7821:1029-1186 +	dpe_88	confident	GTAACCGTGTTGAGGAAAGTGTTTCCCCCACCAAATGCACATTCGTGCTATATGGCAAACAGTTGATTTATGTTATTTTCTAATTCATAAGTCTCTTGTCTGCCATACAGCAAAATGTGTGCTCTATCCTGATGCATCCTATGCTGGCTTAGATCAGA
dp5	4_group4:3553239-3553396 +	dps_14	confident	GTAACCGTGTTGAGGAAAGTGTTTCCCCCACCAAATGCACATTCGTGCTATTTGGCAAACACTTGATTTATGTTATTTTCTAATTCATAAATCTCGTATCTGCCATACAGCAAAATGTGTGCTCTATCCTGATGCATCCTATGCTGGCTTAGATCAGA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droPer2

GTAACCGTGTTGAGGAAAGTGTTTCCCCCACCAAATGCACATTCGTGCTATATGGCAAACAGTTGATTTATGTTATTTTCTAATTCATAAGTCTCTTGTCTGCCATACAGCAAAATGTGTGCTCTATCCTGATGCATCCTATGCTGGCTTAGATCAGA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..................................................TATGGCAAACAGTTGATTTATG......................................................................................	22	1	154.00	154	0	13	10	8	2	121
..................................................TATGGCAAACAGTTGATTTATGT.....................................................................................	23	1	53.00	53	0	2	0	1	0	50
.......................................................................................TAAGTCTCTTGTCTGCCATA...................................................	20	1	20.00	20	0	1	0	0	0	19
.......................................................................................TAAGTCTCTTGTCTGCCATACA.................................................	22	1	12.00	12	0	3	0	0	0	9
..................................................TATGGCAAACAGTTGATTTAT.......................................................................................	21	4	11.50	46	0	0	4	0	0	42
.......................................................................................TAAGTCTCTTGTCTGCCATAC..................................................	21	1	9.00	9	0	3	0	0	0	6
..................................................TATGGCAAACAGTTGATTTATGTC....................................................................................	24	1	7.00	7	0	0	0	0	0	7
.......................................................................................TAAGTCTCTTGTCTGCCAT....................................................	19	1	3.00	3	0	0	0	0	0	3
.......................................................................................TAAGTCTCTTGTCTGCCATT...................................................	20	1	3.00	3	0	0	0	0	0	3
.......................................................................................TAAGTCTCTTGTCTGCCATC...................................................	20	1	3.00	3	0	0	0	0	0	3
.......................................................................................TAAGTCTCTTGTCTGCCATACCT................................................	23	1	2.00	2	0	0	0	0	0	2
.......................................................................................TAAGTCTCTTGTCTGCCATCT..................................................	21	1	2.00	2	0	0	0	0	0	2
.......................................................................................TAAGTCTCTTGTCTGCCATACC.................................................	22	1	2.00	2	0	0	0	0	0	2
..................................................TATGGCAAACAGTTGATTTATGTTT...................................................................................	25	1	1.00	1	0	0	0	0	0	1
..................................................TATGGCAAACAGTTGATTTATT......................................................................................	22	4	1.00	4	0	2	0	0	0	2
........................................................................................AAGTCTCTTGTCTGCCATACA.................................................	21	1	1.00	1	0	1	0	0	0	0
..................................................TATGGCAAACAGTTGATTTATGTT....................................................................................	24	1	1.00	1	0	0	0	0	0	1
..................................................TATGGCAAACAGTTGATTTATGTCC...................................................................................	25	1	1.00	1	0	0	0	0	0	1
........................................................................................AAGTCTCTTGTCTGCCATT...................................................	19	1	1.00	1	0	1	0	0	0	0
.......................................................................................TAAGTCTCTTGTCTGCCATAA..................................................	21	1	1.00	1	0	0	0	0	0	1
..................................................TATGGCAAACAGTTGATTT.........................................................................................	19	4	0.50	2	0	0	0	0	0	2
.......................................................................................TAAGTCTCTTGTCTGCCATTT..................................................	21	2	0.50	1	0	0	0	0	0	1
..................................................TATGGCAAACAGTTGATTTA........................................................................................	20	4	0.25	1	0	0	0	0	0	1
................................................TATATGGCAAACAGTTGATT..........................................................................................	20	4	0.25	1	0	0	0	0	0	1
.......................................................................................TAAGTCTCTTGTCTGCCCGT...................................................	20	13	0.08	1	0	0	0	0	0	1
.......................................................................................TAAGTCTCTTGTCTGCCATCTC.................................................	22	20	0.05	1	0	0	0	0	0	1

dp5

GTAACCGTGTTGAGGAAAGTGTTTCCCCCACCAAATGCACATTCGTGCTATTTGGCAAACACTTGATTTATGTTATTTTCTAATTCATAAATCTCGTATCTGCCATACAGCAAAATGTGTGCTCTATCCTGATGCATCCTATGCTGGCTTAGATCAGA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..................................................TTTGGCAAACACTTGATTTATG......................................................................................	22	1	2529.00	2529	24	605	24	110	5	60	219	3	1479	0
.......................................................................................TAAATCTCGTATCTGCCATACA.................................................	22	1	1200.00	1200	0	34	0	3	1	5	13	0	1144	0
..................................................TTTGGCAAACACTTGATTTAT.......................................................................................	21	1	459.00	459	2	72	2	15	0	13	53	0	302	0
.......................................................................................TAAATCTCGTATCTGCCATAC..................................................	21	1	380.00	380	0	12	2	7	0	6	35	0	318	0
.......................................................................................TAAATCTCGTATCTGCCATA...................................................	20	1	171.00	171	0	4	0	2	0	2	19	0	144	0
..................................................TTTGGCAAACACTTGATTTATGT.....................................................................................	23	1	131.00	131	1	20	1	1	0	3	54	0	51	0
..................................................TTTGGCAAACACTTGATTTATGA.....................................................................................	23	1	89.00	89	0	11	0	0	0	2	7	0	69	0
...................................................TTGGCAAACACTTGATTTATG......................................................................................	21	1	56.00	56	0	35	0	0	0	1	0	0	20	0
..................................................TTTGGCAAACACTTGATTTA........................................................................................	20	1	36.00	36	0	6	0	2	0	2	5	0	21	0
..................................................TTTGGCAAACACTTGATTTATT......................................................................................	22	1	36.00	36	0	6	0	3	0	1	2	0	24	0
.......................................................................................TAAATCTCGTATCTGCCATACAA................................................	23	1	23.00	23	0	2	0	0	0	0	0	0	21	0
..................................................TTTGGCAAACACTTGATTTATGTC....................................................................................	24	1	23.00	23	0	1	0	1	0	1	12	0	8	0
.......................................................................................TAAATCTCGTATCTGCCATACC.................................................	22	1	21.00	21	0	1	0	2	0	0	1	0	17	0
.......................................................................................TAAATCTCGTATCTGCCATAA..................................................	21	1	19.00	19	0	0	0	0	0	2	0	0	17	0
...................................................TTGGCAAACACTTGATTTAT.......................................................................................	20	1	17.00	17	0	9	0	0	0	0	1	0	7	0
..................................................TTTGGCAAACACTTGATTTATC......................................................................................	22	1	16.00	16	0	1	0	3	0	1	2	0	9	0
..................................................TTTGGCAAACACTTGATTTAA.......................................................................................	21	1	12.00	12	0	3	0	0	0	0	2	0	7	0
.................................................ATTTGGCAAACACTTGATTTATG......................................................................................	23	1	12.00	12	1	0	0	0	0	0	0	0	11	0
..................................................TTTGGCAAACACTTGATTTATGAA....................................................................................	24	1	9.00	9	0	0	0	0	0	0	1	0	8	0
.......................................................................................TAAATCTCGTATCTGCCAT....................................................	19	1	9.00	9	0	0	0	0	0	0	0	0	9	0
..................................................TTTGGCAAACACTTGATTTATGC.....................................................................................	23	1	8.00	8	0	0	1	2	0	0	0	0	5	0
..................................................TTTGGCAAACACTTGATTTATGTT....................................................................................	24	1	7.00	7	0	2	0	2	0	0	2	0	1	0
..................................................TTTGGCAAACACTTGATTTATA......................................................................................	22	1	7.00	7	0	0	0	0	0	0	2	0	5	0
.......................................................................................TAAATCTCGTATCTGCCATT...................................................	20	1	7.00	7	0	1	0	0	0	0	0	0	6	0
..................................................TTTGGCAAACACTTGATTTATGTCG...................................................................................	25	1	6.00	6	0	2	0	0	0	1	1	0	2	0
.......................................................................................TAAATCTCGTATCTGCCATAT..................................................	21	1	6.00	6	0	0	0	0	0	0	0	0	6	0
.......................................................................................TAAATCTCGTATCTGCCATACTAA...............................................	24	1	6.00	6	0	0	0	0	0	0	0	0	6	0
..................................................TTTGGCAAACACTTGATTT.........................................................................................	19	1	6.00	6	0	1	0	0	0	1	0	0	4	0
.........................................................................TATTTTCTAATTCATAA....................................................................	17	2	5.50	11	0	0	0	0	0	0	0	0	11	0
................................................................................TAATTCATAAATCTCGTATCTGCCAT....................................................	26	1	5.00	5	0	0	0	0	0	0	0	0	5	0
..................................................TTTGGCAAACACTTGATTTATGTG....................................................................................	24	1	5.00	5	0	0	0	0	0	0	0	0	5	0
.................................................ATTTGGCAAACACTTGATTTAT.......................................................................................	22	1	5.00	5	0	0	0	0	0	0	0	0	5	0
..................................................TTTGGCAAACACTTGATTTATGTCC...................................................................................	25	1	5.00	5	0	1	0	2	0	0	0	0	2	0
.......................................................................................TAAATCTCGTATCTGCCATACT.................................................	22	1	5.00	5	0	0	0	0	0	0	0	0	5	0
..................................................TTTGGCAAACACTTGATTTATGTTTGG.................................................................................	27	1	4.00	4	0	0	0	0	0	0	0	0	4	0
....................................................................................TCATAAATCTCGTATCTGCCATAC..................................................	24	1	4.00	4	0	0	0	0	0	0	0	0	4	0
....................................................................................TCATAAATCTCGTATCTGCCATACC.................................................	25	1	4.00	4	0	0	0	0	0	0	0	0	4	0
..................................................TTTGGCAAACACTTGATTTATGTTAA..................................................................................	26	1	3.00	3	0	0	0	0	0	0	0	0	3	0
..................................................TTTGGCAAACACTTGATTTATGTCCC..................................................................................	26	1	3.00	3	0	0	0	1	0	0	0	0	2	0
................................................................................TAATTCATAAATCTCGTATCTGCCATA...................................................	27	1	3.00	3	0	0	0	1	0	0	1	0	1	0
........................................................................................AAATCTCGTATCTGCCATACA.................................................	21	1	3.00	3	0	2	0	0	0	0	0	0	1	0
..................................................TTTGGCAAACACTTGATTTATGTCT...................................................................................	25	1	2.00	2	0	1	0	0	0	0	1	0	0	0
....................................................................................TCATAAATCTCGTATCTGCC......................................................	20	1	2.00	2	0	1	0	0	0	0	0	0	1	0
................................................................................TAATTCATAAATCTCGTATCTGT.......................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	2	0
..................................................TTTGGCAAACACTTGATTTATGTTAT..................................................................................	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...................................................TTGGCAAACACTTGATTTATGT.....................................................................................	22	1	2.00	2	0	1	0	0	0	0	0	0	1	0
........................................................................................AAATCTCGTATCTGCCATAC..................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	2	0
..................................................TTTGGCAAACACTTGATTTATTA.....................................................................................	23	2	2.00	4	0	0	0	0	0	0	0	0	4	0
....................................................................................TCATAAATCTCGTATCTGCCATACAAA...............................................	27	1	2.00	2	0	0	0	0	0	0	0	0	2	0
..................................................TTTGGCAAACACTTGATTTATTC.....................................................................................	23	1	2.00	2	0	0	0	0	0	0	1	0	1	0
..................................................TTTGGCAAACACTTGATTTATCG.....................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	2	0
................................................................................TAATTCATAAATCTCGTATCTGCCATAC..................................................	28	1	2.00	2	0	0	0	0	0	0	0	0	2	0
........................................................................................AAATCTCGTATCTGCCATA...................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	2	0
.......................................................................................TAAATCTCGTATCTGCCA.....................................................	18	1	2.00	2	0	0	0	1	0	0	0	0	1	0
....................................................................................TCATAAATCTCGTATCTGCCATACAA................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	2	0
..................................................TTTGGCAAACACTTGATTTATGTA....................................................................................	24	1	2.00	2	0	0	0	0	0	0	1	0	1	0
..................................................TTTGGCAAACACTTGATTTT........................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	2	0
..............................................................................TCTAATTCATAAATCTCGTATCTG........................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	2	0
...................................................................................TTCATAAATCTCGTATCTGCCATA...................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	2	0
...................................................TTGGCAAACACTTGATTTATGA.....................................................................................	22	1	2.00	2	0	1	0	0	0	0	0	0	1	0
.......................................................................................TAAATCTCGTATCTGCCATC...................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	2	0
....................................................................................TCATAAATCTCGTATCTGCCAT....................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	2	0
....................................................................................TCATAAATCTCGTATCTGCCATACA.................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	2	0
................................................................................TAATTCATAAATCTCGTATCTG........................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	2	0
..................................................TTTGGCAAACACTTGATTTATGTTATT.................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	2	0
...........................................................................TTTTCTAATTCATAA....................................................................	15	3	1.33	4	0	0	0	0	0	0	0	0	4	0
..................................................TTTGGCAAACACTTGATTTATGTCCG..................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................TGGCAAACACTTGATTTATG......................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	1	0
..................................................TTTGGCAAACACTTGATTTATGTAG...................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.....................................................................................CATAAATCTCGTATCTGCCATACA.................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.....................................................GGCAAACACTTGATTTATGTCG...................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.................................................ATTTGGCAAACACTTGAT...........................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.........................................................................................AATCTCGTATCTGCCATA...................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	1	0
....................................................TGGCAAACACTTGATTTATGT.....................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.......................................................................................TAAATCTCGTATCTGCCATATT.................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.......................................................................................TAAATCTCGTATCTGCCATACATTC..............................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0
................................................................................TAATTCATAAATCTCGTATCTGC.......................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	1	0
..................................................TTTGGCAAACACTTGATTTATCA.....................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	1	0
..................................................TTTGGCAAACACTTGATTTATGTTA...................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................ATTTGGCAAACACTTGATTTATGTA....................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0
................................................................................TAATTCATAAATCTCGTATCTGCCA.....................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0
..................................................TTTGGCAAACACTTGATT..........................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	1	0
...................................................TTGGCAAACACTTGATTTATGTTAT..................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................TTGGCAAACACTTGATTTA........................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	1	0
....................................................TGGCAAACACTTGATTTAT.......................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................TAAATCTCGTATCTGCCATACTC................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................TTTGGCAAACACTTGATTTATAA.....................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.................................................ATTTGGCAAACACTTGATTTATT......................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	1	0
................................................................................TAATTCATAAATCTCGTATCTGCCC.....................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0
......................................................GCAAACACTTGATTTATGTTTG..................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	1	0
................................................................................TAATTCATAAATCTCGTATCTGCC......................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	1	0
............................................................................................CTCGTATCTGCCATACA.................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	1	0
...................................................TTGGCAAACACTTGATT..........................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.......................................................................................TAAATCTCGTATCTG........................................................	15	1	1.00	1	0	0	0	0	0	0	0	0	1	0
...................................................TTGGCAAACACTTGATTTATC......................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................TAAATCTCGTATCTGCCATACCA................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	1	0
..............................................................................TCTAATTCATAAATCTCGTATCTGCC......................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	1	0
..................................................TTTGGCAAACACTTGATTTATGG.....................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	1	0
..................................................TTTGGCAAACACTTGATTTATCCC....................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.....................................................GGCAAACACTTGATTTATG......................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................TTTGGCAAACACTTGATTTATGTTATTT................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	1	0
......................................................................................ATAAATCTCGTATCTGCCATAC..................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	1	0
................................................................................TAATTCATAAATCTCGTAT...........................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.......................................................................................TAAATCTCGTATCTGCCATAG..................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0
....................................................................................TCATAAATCTCGTATCTGCCATACCA................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	1	0
..............................................................................TCTAATTCATAAATCTCGTATCTGC.......................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.................................................ATTTGGCAAACACTTGATTTATAAA....................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0
..................................................TTTGGCAAACACTTGATTTATAG.....................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	1	0
......................................................................................ATAAATCTCGTATCTGCCATACA.................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	1	0
..................................................TTTGGCAAACACTTGATTTATGTTCC..................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.......................................................................................TAAATCTCGTATCTGCCATAAC.................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	1	0
..................................................TTTGGCAAACACTTGAT...........................................................................................	17	2	0.50	1	0	0	0	0	0	0	0	0	1	0
.........................................................AACACTTGATTTATG......................................................................................	15	3	0.33	1	0	0	0	0	0	0	0	0	1	0
..................................................TTTGGCAAACACTTGATTAT........................................................................................	20	5	0.20	1	0	0	0	0	0	0	0	0	1	0
.................................................ATTTGGCAAACACTT..............................................................................................	15	5	0.20	1	0	0	0	0	0	0	0	0	1	0
..................................................TTTGGCAAACACTTGATTATG.......................................................................................	21	13	0.08	1	0	0	0	0	0	0	0	0	1	0

dpe_88

scaffold_7821:1079-1136 +

confident

Testes-restricted

intergenic

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads