ID:

dpe_871

 Coordinate:

scaffold_169:12078-12228 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-15.9 -15.4 -15.2 -15.2

Flybase annnotation

CDS [Dper\GL14502-cds]; exon [dper_GLEANR_15258:1]; intron [Dper\GL14502-in]

No Repeatable elements found

mature
  1. dpe_871  scaffold_169:12170-12191 +
  2. scaffold_380:12991-13012 -
  3. scaffold_5540:783-804 +
  4. scaffold_10432:795-816 -
star
  1. dpe_871  scaffold_169:12205-12223 +
  2. scaffold_28:1089608-1089626 +
  3. dpe_1682  scaffold_430:7302-7320 -
  4. dpe_932  scaffold_186:28095-28113 +
  5. scaffold_4517:848-866 -
  6. scaffold_10432:763-781 -

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CATGGAGGGAAAAATGAGTGCCCTTCTAACTGAAATGCGCACTTTACAGAGTATGATTTCTACTAAATTGAAATATGAACTATGACCTAAATTGCACTTTGTTTTTCAGATCAACAAAATTCATCAATTAAACAAATGCCTGTGCTGGTTGAAGCGGTCGCTGAGCAGGCTGGCACTTTAAAAAGTCCAGTCAGGCAGCAAGGACAGGAGCAAACGCTCACAAAATGTTTCCCTGTTTTAACAGTCCAGGG
**********************************************************************************************************************************************.(((((((((((..((((((.....))).))).)))))).....))).....))******************************************************* 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 M021
embryo
 V057
head
................................................................................................CTTTGTTTATCAGATCAACAA...................................................................................................................................... 21 1 2 0.50 1 1 0 0
..............................................................................................................................................TGCTGGTTGAAGCGGTCGCTGA....................................................................................... 22 0 4 0.50 2 2 0 0
.................................................................................................................................................................................TTAAAAAGTCCAGTCAGGC....................................................... 19 0 6 0.50 3 0 3 0
...........................................................................TGAACTATGACCTAAATTGCACT......................................................................................................................................................... 23 0 2 0.50 1 1 0 0
.......................................................................................................................................................................................................AAGGACAGGAGCAAACGCTCACAA............................ 24 0 2 0.50 1 1 0 0
..............................................CAGAGTATGATTTCTACTAAATTG..................................................................................................................................................................................... 24 0 2 0.50 1 1 0 0
...........................................................................TGAACTATGACCTAAATTG............................................................................................................................................................. 19 0 3 0.33 1 1 0 0
.......................TTCTAACTGAAATGCGCACTTTACA........................................................................................................................................................................................................... 25 0 3 0.33 1 1 0 0
............................................................................................................................................TGTGCTGGTTGAAGCGGTC............................................................................................ 19 0 4 0.25 1 1 0 0
......................................................................................................................................................GAAGCGGTCGCTGAGCAG................................................................................... 18 0 4 0.25 1 1 0 0
..........................................................................................................................................................CGGTCGCTGAGCAGGCTGGCAA........................................................................... 22 1 4 0.25 1 1 0 0
....................................................................................................................................................TTGAAGCGGTCGCTGAGCAGG.................................................................................. 21 0 4 0.25 1 0 1 0
.......................TTCTAACTGAAATGCGCACTTTA............................................................................................................................................................................................................. 23 0 4 0.25 1 1 0 0
..................................................................................................................................................................................TAAAAAGTGCAGTCAGGCAGC.................................................... 21 1 6 0.17 1 1 0 0
.................................................................................................................................................................................TTAAAAAGTCCAGTCAGGCAGC.................................................... 22 0 6 0.17 1 1 0 0
.............................................................................................................................................................................................................................AAAATGTTTCCCTGTTTTAA.......... 20 0 8 0.13 1 1 0 0
..............TGGGTGCCCTTCTACCTG........................................................................................................................................................................................................................... 18 2 9 0.11 1 0 0 1
...........................................................................................TAGCACTTTGTGTTTCAGCT............................................................................................................................................ 20 3 16 0.06 1 0 0 1

Anti-sense strand reads

GTACCTCCCTTTTTACTCACGGGAAGATTGACTTTACGCGTGAAATGTCTCATACTAAAGATGATTTAACTTTATACTTGATACTGGATTTAACGTGAAACAAAAAGTCTAGTTGTTTTAAGTAGTTAATTTGTTTACGGACACGACCAACTTCGCCAGCGACTCGTCCGACCGTGAAATTTTTCAGGTCAGTCCGTCGTTCCTGTCCTCGTTTGCGAGTGTTTTACAAAGGGACAAAATTGTCAGGTCCC
*******************************************************.(((((((((((..((((((.....))).))).)))))).....))).....))********************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 M021
embryo
 V042
embryo
 V111
male body		 V057
head
............................................................................................................................................................CAGCGACTCGTCCGACCGTGAAAT....................................................................... 24 0 4 8.00 32 30 0 2 0 0
......CCCTTTTTACTCACGGGAAGATTGACT.......................................................................................................................................................................................................................... 27 0 3 6.67 20 19 0 0 1 0
...............................................................................................................................................................................GAAATTTTTCAGGTCAGTCCGTCGT................................................... 25 0 6 4.17 25 18 7 0 0 0
...........................................................................................................................................................CCAGCGACTCGTCCGACCGTGAAAT....................................................................... 25 0 4 4.00 16 16 0 0 0 0
.............................................................................................................................................................AGCGACTCGTCCGACCGTGAAAT....................................................................... 23 0 4 3.25 13 12 0 1 0 0
.............................GACTTTACGCGTGAAATGTCTCATACT................................................................................................................................................................................................... 27 0 3 3.00 9 9 0 0 0 0
..............................................................................................................................................ACGACCAACTTCGCCAGCGACTCGT.................................................................................... 25 0 4 3.00 12 12 0 0 0 0
............................................................................................................................................ACACGACCAACTTCGCCAGCGACTCGT.................................................................................... 27 0 4 2.75 11 11 0 0 0 0
.......................................................................................................................................................................................TCAGGTCAGTCCGTCGTTCCTGTCCT.......................................... 26 0 2 2.50 5 5 0 0 0 0
........CTTTTTACTCACGGGAAGATTGACT.......................................................................................................................................................................................................................... 25 0 3 2.00 6 6 0 0 0 0
.......CCTTTTTACTCACGGGAAGATTGACT.......................................................................................................................................................................................................................... 26 0 3 2.00 6 3 1 0 2 0
............................TGACTTTACGCGTGAAATGTCTCATACT................................................................................................................................................................................................... 28 0 3 2.00 6 6 0 0 0 0
.............................................................................................................................................................................................CAGTCCGTCGTTCCTGTCCTCGTTT..................................... 25 0 3 2.00 6 4 2 0 0 0
.............................GACTTTACGCGTGAAATGCCTCATACT................................................................................................................................................................................................... 27 1 4 1.75 7 7 0 0 0 0
.........................................................................................................................................................CGCCAGCGACTCGTCCGACCGTGAAAT....................................................................... 27 0 4 1.75 7 7 0 0 0 0
.............................................................................................................................................CACGACCAACTTCGCCAGCGACTCGT.................................................................................... 26 0 4 1.75 7 7 0 0 0 0
............................TGACTTTACGCGTGAAATGCCTCAT...................................................................................................................................................................................................... 25 1 5 1.60 8 8 0 0 0 0
...........................................................................................................................................GACACGACCAACTTCGCCAGCGACTCGT.................................................................................... 28 0 4 1.50 6 6 0 0 0 0
.........................................................................................TTAACGTGAAACAAAAAGTCTAGTTGT....................................................................................................................................... 27 0 2 1.50 3 3 0 0 0 0
.........................................................................................TTAACGTGAAACAAAAAGTCTAGTTGTT...................................................................................................................................... 28 0 2 1.50 3 3 0 0 0 0
..........................................................................................................................................................GCCAGCGACTCGTCCGACCGTGAAAT....................................................................... 26 0 4 1.50 6 6 0 0 0 0
......CCCTTTTTACTCACGGGAAGATTGAC........................................................................................................................................................................................................................... 26 0 3 1.33 4 4 0 0 0 0
.......................................................................................................................................................................................TCAGGTCAGTCCGTCGTTCCTGTCC........................................... 25 0 3 1.33 4 0 4 0 0 0
.......CCTTTTTACTCACGGGAAGATTGAC........................................................................................................................................................................................................................... 25 0 3 1.33 4 4 0 0 0 0
..........................................................................................................................................GGACACGACCAACTTCGCCAGCGACT....................................................................................... 26 0 4 1.25 5 3 0 2 0 0
......................................................................................................................................................CTTCGCCAGCGACTCGTCCGACCGT............................................................................ 25 0 4 1.25 5 5 0 0 0 0
.............................GACTTTACGCGTGAAATGCCTCAT...................................................................................................................................................................................................... 24 1 5 1.20 6 6 0 0 0 0
.......................................................................................................................................................TTCGCCAGCGACTCGTCCGACCGT............................................................................ 24 0 4 1.00 4 4 0 0 0 0
..........................................................................................................................................................................................GGTCAGTCCGTCGTTCCTGTCCT.......................................... 23 0 2 1.00 2 2 0 0 0 0
......................................................................................................................................................................................................GTTCCTGTCCTCGTTTGCGAGTGT............................. 24 0 2 1.00 2 2 0 0 0 0
...............................................................................................................................................CGACCAACTTCGCCAGCGACTCGT.................................................................................... 24 0 4 1.00 4 4 0 0 0 0
.........TTTTTACTCACGGGAAGATTGACT.......................................................................................................................................................................................................................... 24 0 3 1.00 3 3 0 0 0 0
............................................................................................................................................................................................TCAGTCCGTCGTTCCTGTCCTCGT....................................... 24 0 3 1.00 3 3 0 0 0 0
.....................................................................................GGATTTAACGTGAAACAAAAAGTCTAGT.......................................................................................................................................... 28 0 2 1.00 2 2 0 0 0 0
............................TGACTTTACGCGTGAAATGCCTCATACT................................................................................................................................................................................................... 28 1 4 1.00 4 4 0 0 0 0
........................................................................................................AAGTCTAGTTGTTTTAAGTAGTTAATT........................................................................................................................ 27 0 2 1.00 2 1 0 0 1 0
............................................................ATGATTTAACTTTATACTTGATACT...................................................................................................................................................................... 25 0 2 1.00 2 2 0 0 0 0
............................................................................................................................................................CAGCGACTCGTCCGACCGTGAAATTTT.................................................................... 27 0 4 0.75 3 3 0 0 0 0
..........................................................................................................................................................GCCAGCGACTCGTCCGACCGT............................................................................ 21 0 4 0.75 3 3 0 0 0 0
................................................................................................................................................GACCAACTTCGCCAGCGACTCGT.................................................................................... 23 0 4 0.75 3 2 0 1 0 0
...............................................................................................................................................................CGACTCGTCCGACCGTGAAAT....................................................................... 21 0 4 0.75 3 3 0 0 0 0
............................................................................................................................................................CAGCGACTCGTCCGACCGTGAAATTT..................................................................... 26 0 4 0.75 3 1 0 2 0 0
.......................................................................................................................................................................................ACAGGTCAGTCCGTCGTTCC................................................ 20 1 3 0.67 2 0 2 0 0 0
.....................GGAAGATTGACTTTACGCGTGAAAT............................................................................................................................................................................................................. 25 0 3 0.67 2 1 0 1 0 0
............................TGACTTTACGCGTGAAATGTCTCAT...................................................................................................................................................................................................... 25 0 3 0.67 2 2 0 0 0 0
.............................GACTTTACGCGTGAAATGTCTCATAC.................................................................................................................................................................................................... 26 0 3 0.67 2 2 0 0 0 0
...................................ACGCGTGAAATGTCTCATACTAAAGAT............................................................................................................................................................................................. 27 0 3 0.67 2 2 0 0 0 0
..............................................................................................................................TAATTTGTTTACGGACACGACCAACT................................................................................................... 26 0 3 0.67 2 2 0 0 0 0
....................................CGCGTGAAATGTCTCATACTAAAGAT............................................................................................................................................................................................. 26 0 3 0.67 2 2 0 0 0 0
.............................................................................................................................................................................................CAGTCCGTCGTTCCTGTCCTCGT....................................... 23 0 3 0.67 2 2 0 0 0 0
......CCCTTTTTACTCACGGGAGGATTGACT.......................................................................................................................................................................................................................... 27 1 3 0.67 2 2 0 0 0 0
................................TTTACGCGTGAAATGTCTCATACT................................................................................................................................................................................................... 24 0 3 0.67 2 2 0 0 0 0
.......................AAGATTGACTTTACGCGTGAAATGTCT......................................................................................................................................................................................................... 27 0 3 0.67 2 2 0 0 0 0
.............................GACTTTACGCGTGAAATGGCTCATACT................................................................................................................................................................................................... 27 1 3 0.67 2 2 0 0 0 0
.............................GACTTTACGCGTGAAATGTCTCAT...................................................................................................................................................................................................... 24 0 3 0.67 2 2 0 0 0 0
..........TTTTACTCACGGGAAGATTGACTTT........................................................................................................................................................................................................................ 25 0 3 0.67 2 2 0 0 0 0
.....................................................................................................................................................................................................................TGCGAGTGTTTTACAAAGGGA................. 21 0 2 0.50 1 1 0 0 0 0
........................................................................................................AAGTCTAGTTGTTTTAAGTAGTTAATTT....................................................................................................................... 28 0 2 0.50 1 1 0 0 0 0
......................GAAGATTGACTTTACGCGTGAAAT............................................................................................................................................................................................................. 24 0 4 0.50 2 2 0 0 0 0
.....................................................................................................AAAAAGTCTAGTTGTTTTAAGTAGT............................................................................................................................. 25 0 2 0.50 1 1 0 0 0 0
....................................................................................................................................................................................................................TTGCGAGTGTTTTACAAAGGGACAA.............. 25 0 2 0.50 1 1 0 0 0 0
............................................................................................................................................................................................................GTCCTCGTTTGCGAGTGTTTTACAA...................... 25 0 2 0.50 1 0 1 0 0 0
............................................................................................................................................................................................................................GTTTTACAAAGGGACAAAATTGT........ 23 0 8 0.50 4 4 0 0 0 0
.........................................................................................................................................................CGCCAGCGACTCGTCCGACCGT............................................................................ 22 0 4 0.50 2 2 0 0 0 0
.........................................................................................................................................................................................AGGTCAGTCCGTCGTTCCTGTCCT.......................................... 24 0 2 0.50 1 1 0 0 0 0
....................................................................................TGGATTTAACGTGAAACAAAAAGTCTAGT.......................................................................................................................................... 29 0 2 0.50 1 0 0 0 1 0
.............................................................................................................................................................................GTGAAATTTTTCAGGTCAGTCCGT...................................................... 24 0 2 0.50 1 1 0 0 0 0
.......................................................................................................................................................................................................AAACTGTCCTCGTTTGCGAGTGTTT........................... 25 3 2 0.50 1 1 0 0 0 0
......................................................................................................................................................................................................GTTCCTGTCCTCGTTTGCGAGT............................... 22 0 2 0.50 1 1 0 0 0 0
........................................................................................................................................................................................................TCCTGTCCTCGTTTGCGAGTGTTT........................... 24 0 2 0.50 1 1 0 0 0 0
..................................................................................................................................................................................................CGTCGTTCCTGTCCTCGTTTGCGAGT............................... 26 0 2 0.50 1 1 0 0 0 0
.....................................................................................GGATTTAACGTGAAACAAAAAGTCT............................................................................................................................................. 25 0 2 0.50 1 1 0 0 0 0
....................................................................................................CAAAAAGTCTAGTTGTTTTAAGTAGT............................................................................................................................. 26 0 2 0.50 1 1 0 0 0 0
.......................................................................................................................................................................................................................CGAGTGTTTTACAAAGGGACAAAATTGT........ 28 0 2 0.50 1 1 0 0 0 0
.............................................................................................................................................................AGCGACTCGTCCGACCGTGAAATTTT.................................................................... 26 0 4 0.50 2 2 0 0 0 0
...............................................................................................TGAAACAAAAAGTCTAGTTGTTTTAAGT................................................................................................................................ 28 0 2 0.50 1 1 0 0 0 0
............................................................................................................................................................CAGCGACTCGTCCGACCGTGAAA........................................................................ 23 0 4 0.50 2 2 0 0 0 0
.................................................................TTAACTTTATACTTGATACTGGATT................................................................................................................................................................. 25 0 2 0.50 1 1 0 0 0 0
.............................................................................................................................................................................................CAGTCCGTCGTTCCTGTCCTCGTTTGCGA................................. 29 0 2 0.50 1 1 0 0 0 0
.........................................................................................................AGTCTAGTTGTTTTAAGTAGTTAATT........................................................................................................................ 26 0 2 0.50 1 1 0 0 0 0
....................................................................................................................................................AACTTCGCCAGCGACTCGTCCGACCGT............................................................................ 27 0 4 0.50 2 2 0 0 0 0
............................................ATGTCTCATACTAAAGATGATTTAACT.................................................................................................................................................................................... 27 0 2 0.50 1 0 1 0 0 0
..............................................................................................................................................................GCGACTCGTCCGACCGTGAAAT....................................................................... 22 0 4 0.50 2 2 0 0 0 0
................................................................................................................................................................GACTCGTCCGACCGTGAAAT....................................................................... 20 0 4 0.50 2 2 0 0 0 0
...........................................................................................................................................................................................GTCAGTCCGTCGTTCCTGTCCT.......................................... 22 0 2 0.50 1 1 0 0 0 0
............................................................................................................................................................TAGCGACTCGTCCGACCGTGAAAT....................................................................... 24 1 4 0.50 2 2 0 0 0 0
........................................................................................ATTAACGTGAAACAAAAAGTCTAGT.......................................................................................................................................... 25 1 2 0.50 1 1 0 0 0 0
..................................................................................................................................................................................................................GTTTGCGAGTGTTTTACAAAGGGA................. 24 0 2 0.50 1 1 0 0 0 0
.......................................................................................................................................................................................................................AAAGTGTTTTACAAAGGGACAAAATTGT........ 28 2 2 0.50 1 1 0 0 0 0
.......................................GTGAAATGTCTCATACTAAAGATGA........................................................................................................................................................................................... 25 0 2 0.50 1 1 0 0 0 0
.................................................................TTAACTTTATACTTGATACTGGAT.................................................................................................................................................................. 24 0 2 0.50 1 1 0 0 0 0
...........................................................................................................................................................................CCGTGAAATTTTTCAGGTCAGTCCGT...................................................... 26 0 2 0.50 1 0 1 0 0 0
.....................................................................................................................................................................................................................TGCGAGTGTTTTACAAAGGGACAAAAT........... 27 0 2 0.50 1 1 0 0 0 0
............................................................................................................................................................CAGCGACTCGTCCGACCGTGAAATTTTT................................................................... 28 0 4 0.50 2 2 0 0 0 0
...........................................................................................................................................................ACAGCGACTCGTCCGACCGT............................................................................ 20 1 4 0.50 2 2 0 0 0 0
.....................................................................................................................TTAAGTAGTTAATTTGTTTACGGAC............................................................................................................. 25 0 2 0.50 1 1 0 0 0 0
.....................................................................................................................................................................................................CGTTCCTGTCCTCGTTTGCGAGT............................... 23 0 2 0.50 1 1 0 0 0 0
..................................................................................................................................................CCAACTTCGCCAGCGACTCGT.................................................................................... 21 0 4 0.50 2 2 0 0 0 0
.........................................................................................................................................CGGACACGACCAACTTCGCCAGCGACT....................................................................................... 27 0 4 0.50 2 1 0 1 0 0
........................................................................................................................................................................................CAGGTCAGTCCGTCGTTCCTGTCCT.......................................... 25 0 2 0.50 1 1 0 0 0 0
...................................................................................................................................................................................................GTCGTTCCTGTCCTCGTTTGCGAGT............................... 25 0 2 0.50 1 1 0 0 0 0
..............................................GTCTCATACTAAAGATGATTTAACT.................................................................................................................................................................................... 25 0 2 0.50 1 1 0 0 0 0
........................................................................................................................................................................................................................................GACAAAATTGTCAGGTCCC 19 0 5 0.40 2 0 2 0 0 0
..........................ATTGACTTTACGCGTGAAATGTCT......................................................................................................................................................................................................... 24 0 3 0.33 1 1 0 0 0 0
.............................GACTTTACGCGTGAAATGACTCATACT................................................................................................................................................................................................... 27 1 3 0.33 1 1 0 0 0 0
..............................................................................................................................TAATTTGTTTACGGACACGACCAAC.................................................................................................... 25 0 3 0.33 1 1 0 0 0 0
.......................................................................................................................................................................................TCAGGTCAGTCCGTCGTTCCTTCCC........................................... 25 2 3 0.33 1 1 0 0 0 0
..................................................................................................................................................................................ATTTTTCAGGTCAGTCCGTCGT................................................... 22 0 6 0.33 2 2 0 0 0 0
...................................ACGCGTGAAATGTCTCATACT................................................................................................................................................................................................... 21 0 3 0.33 1 1 0 0 0 0
....CTCCCTTTTTACTCACGGGAAGATTGACT.......................................................................................................................................................................................................................... 29 0 3 0.33 1 1 0 0 0 0
............TTACTCACGGGAGGATTGACT.......................................................................................................................................................................................................................... 21 1 3 0.33 1 1 0 0 0 0
..............................ACTTTACGCGTGAAGTGTCTCAT...................................................................................................................................................................................................... 23 1 3 0.33 1 1 0 0 0 0
.............................................................................................................................................................................................CAGTCCGTCGTTCCTGTCCT.......................................... 20 0 3 0.33 1 1 0 0 0 0
..........TTTTACTCACGGGAAGATTGACTT......................................................................................................................................................................................................................... 24 0 3 0.33 1 1 0 0 0 0
.......CCTTTTTACTCACGGGATGATTGACT.......................................................................................................................................................................................................................... 26 1 3 0.33 1 1 0 0 0 0
..............................................................................................................................TAATTTGTTTACGGACACGACCAACTT.................................................................................................. 27 0 3 0.33 1 1 0 0 0 0
....................GGGAAGATTGACTTTACGCGTGAAA.............................................................................................................................................................................................................. 25 0 3 0.33 1 1 0 0 0 0
.......................................................................................................................................................................................TCAGGTCAGTCCGTCCTTCCTGTC............................................ 24 1 3 0.33 1 1 0 0 0 0
............................TGACTTTACGCGTGAAATGTCT......................................................................................................................................................................................................... 22 0 3 0.33 1 1 0 0 0 0
...........TTTACTCACGGGAAGATTGACTT......................................................................................................................................................................................................................... 23 0 3 0.33 1 1 0 0 0 0
....................................CGCGTGAAATGTCTCATACT................................................................................................................................................................................................... 20 0 3 0.33 1 1 0 0 0 0
....................GGGAAGATTGACTTTACGCGT.................................................................................................................................................................................................................. 21 0 3 0.33 1 1 0 0 0 0
.......................AAGATTGACTTTACGCGTGAAATGT........................................................................................................................................................................................................... 25 0 3 0.33 1 1 0 0 0 0
.................................TTACGCGTGAAATGTCTCATACTAAAG............................................................................................................................................................................................... 27 0 3 0.33 1 1 0 0 0 0
............................TGACTTTACGCGTGAAGTGTCTCAT...................................................................................................................................................................................................... 25 1 3 0.33 1 1 0 0 0 0
GTACCTCCCTTTTTACTCACGGGAAGAT............................................................................................................................................................................................................................... 28 0 3 0.33 1 1 0 0 0 0
.......................................................................................................................................................................................ACAGGTCAGTCCGTCGTTCCTGT............................................. 23 1 3 0.33 1 1 0 0 0 0
................................................................................................................................................................................AAATTTTTCAGGTCAGTCCGTCGTT.................................................. 25 0 3 0.33 1 1 0 0 0 0
.................................................................................................................................................................................AATTTTTCAGGTCAGTCCGTCGT................................................... 23 0 6 0.33 2 2 0 0 0 0
...................CGGGAAGATTGACTTTACGCGT.................................................................................................................................................................................................................. 22 0 3 0.33 1 1 0 0 0 0
...................................ACGCGTGAAATGTCTCATACTAAAGA.............................................................................................................................................................................................. 26 0 3 0.33 1 1 0 0 0 0
............................TGACTTTACGCGTGAAATGGCTCATACT................................................................................................................................................................................................... 28 1 3 0.33 1 1 0 0 0 0
.....................................................................................................................................................................................TTTCAGGTCAGTCCGTCGTTCCT............................................... 23 0 3 0.33 1 1 0 0 0 0
................................................................................................................................................................................AAATTTTTCAGGTCAGTCCGTCGT................................................... 24 0 6 0.33 2 2 0 0 0 0
............................TGACTTTACGCGTGAAATGTCTCA....................................................................................................................................................................................................... 24 0 3 0.33 1 1 0 0 0 0
......CCCTTTTTACTCACGGGACGATTGACT.......................................................................................................................................................................................................................... 27 1 3 0.33 1 1 0 0 0 0
............................TGACTTTACGCGTGAAATGTCTCATACG................................................................................................................................................................................................... 28 1 3 0.33 1 1 0 0 0 0
...................CGGGAAGATTGACTTTACGCGTGAAA.............................................................................................................................................................................................................. 26 0 3 0.33 1 0 0 1 0 0
..........................................................................TACTTGATACTGGATTTAACGTG.......................................................................................................................................................... 23 0 3 0.33 1 1 0 0 0 0
.............................AACTTTACGCGTGAAATGTCTCATACT................................................................................................................................................................................................... 27 1 3 0.33 1 1 0 0 0 0
.CACCTCCCTTTTTACTCACGGGAAGAT............................................................................................................................................................................................................................... 27 1 3 0.33 1 1 0 0 0 0
.......CCCTTTTACTCACGGGAAGATTGACT.......................................................................................................................................................................................................................... 26 1 3 0.33 1 1 0 0 0 0
...........................................................................................................................................................................................TTCAGTCCGTCGTTCCTGTCCTCGT....................................... 25 1 3 0.33 1 1 0 0 0 0
......CCCTTTTTACTCACGGGAAGATTGA............................................................................................................................................................................................................................ 25 0 3 0.33 1 1 0 0 0 0
...................CGGGAAGATTGACTTTACGCGTGA................................................................................................................................................................................................................ 24 0 3 0.33 1 1 0 0 0 0
...CCTCCCTTTTTACTCACGGGAAGATT.............................................................................................................................................................................................................................. 26 0 3 0.33 1 1 0 0 0 0
.......CCTTTTTACTCACGGGAAGATTGA............................................................................................................................................................................................................................ 24 0 3 0.33 1 1 0 0 0 0
...................AGGGAAGATTGACTTTACGCGT.................................................................................................................................................................................................................. 22 1 3 0.33 1 1 0 0 0 0
.........................GATTGACTTTACGCGTGAAATGTCT......................................................................................................................................................................................................... 25 0 3 0.33 1 1 0 0 0 0
............................................................................................................................................................................................ACAGTCCGTCGTTCCGGTCCTCGT....................................... 24 2 3 0.33 1 1 0 0 0 0
....................GGGAAGATTGACTTTACGCGTGAAAT............................................................................................................................................................................................................. 26 0 3 0.33 1 1 0 0 0 0
....................GGGAAGATTGACTTTACCCGTGAAAT............................................................................................................................................................................................................. 26 1 3 0.33 1 1 0 0 0 0
......................................................................TTTATACTTGATACTGGATTTAACGT........................................................................................................................................................... 26 0 3 0.33 1 1 0 0 0 0
..................................................................................................................................................................................ATTTTTCAGGTCAGTCCGTCGTT.................................................. 23 0 3 0.33 1 1 0 0 0 0
.........TTTTTACTCACGGGAAGATTGAC........................................................................................................................................................................................................................... 23 0 3 0.33 1 1 0 0 0 0
............................................................................................................................................................................................AAAGTCCGTCGTTCCTGTCCTCGTT...................................... 25 2 3 0.33 1 1 0 0 0 0
....................GGGGAGATTGACTTTACGCGTGAAA.............................................................................................................................................................................................................. 25 1 3 0.33 1 1 0 0 0 0
..............................................................................................................................................................................................AGTCCGTCGTTCCTGTCCTCGTT...................................... 23 0 3 0.33 1 1 0 0 0 0
.....................GGAAGATTGACTTTACGCGTGAAA.............................................................................................................................................................................................................. 24 0 3 0.33 1 1 0 0 0 0
................................................................................................................................................................................................TCCGTCGTTCCTGTCCTCGTTT..................................... 22 0 3 0.33 1 0 1 0 0 0
..............................ACTTTACGCGTGAAATGTCTCATACT................................................................................................................................................................................................... 26 0 3 0.33 1 1 0 0 0 0
....................................................................................................................................................................................TTTTCAGGTCAGTCCGTCGTTCCTGT............................................. 26 0 3 0.33 1 1 0 0 0 0
....CTCCCTTTTTACTCACGGGAAGAT............................................................................................................................................................................................................................... 24 0 3 0.33 1 1 0 0 0 0
................................................................................................................................................................................................CCCGTCGTTCCTGTCCTCGTTT..................................... 22 1 3 0.33 1 0 1 0 0 0
....................................................................................................................................................................................TTTTCAGGTCAGTCCGTCGTTCCT............................................... 24 0 3 0.33 1 1 0 0 0 0
..................................................................................................................................................................................................CGTCGTTCCTGTCCTCGTT...................................... 19 0 3 0.33 1 1 0 0 0 0
......................GAAGATTGACTTTACGCGTGAAATGT........................................................................................................................................................................................................... 26 0 3 0.33 1 1 0 0 0 0
..ACCTCCCTTTTTACTCACGGGAAGATT.............................................................................................................................................................................................................................. 27 0 3 0.33 1 1 0 0 0 0
.....................GGAAGATTGACTTTACGCGTTA................................................................................................................................................................................................................ 22 1 3 0.33 1 1 0 0 0 0
.....TCCCTTTTTACTCACGGGAAGATT.............................................................................................................................................................................................................................. 24 0 3 0.33 1 1 0 0 0 0
.................................TTACGCGTGAAATGTCTCAT...................................................................................................................................................................................................... 20 0 3 0.33 1 1 0 0 0 0
.......................................................................................................................................................................................TCAGGTCAGTCCGTCGTTCCTGT............................................. 23 0 3 0.33 1 1 0 0 0 0
.....................................GCGTGAAATGTCTCATACTAAAGAT............................................................................................................................................................................................. 25 0 3 0.33 1 1 0 0 0 0
..................................TACGCGGGAAATGCCTCATACTAAAGAT............................................................................................................................................................................................. 28 2 4 0.25 1 1 0 0 0 0
.............................................................................................................................................CACGACCAACTTCGCCAGCGACT....................................................................................... 23 0 4 0.25 1 1 0 0 0 0
.............................GACTTTACGCGTGAAATGCCTCATAC.................................................................................................................................................................................................... 26 1 4 0.25 1 1 0 0 0 0
...................................ACGCGTGAAATGCCTCATACTAAAGAT............................................................................................................................................................................................. 27 1 4 0.25 1 1 0 0 0 0
.................................................................................................................................................ACCAACTTCGCCAGCGACTCGT.................................................................................... 22 0 4 0.25 1 1 0 0 0 0
................................................................................................................................................................GACTCGTCCGACCGTGAAATT...................................................................... 21 0 4 0.25 1 1 0 0 0 0
....................................CGCGTGAAATGCCTCATACT................................................................................................................................................................................................... 20 1 4 0.25 1 1 0 0 0 0
.........................................................................................................................................CGGACACGACCAACTTCGCCAGCGA......................................................................................... 25 0 4 0.25 1 1 0 0 0 0
..............................ACTTTACGCGTGAAATGCCTCATACT................................................................................................................................................................................................... 26 1 4 0.25 1 1 0 0 0 0
......................................................................................................................................................CTTCGCCAGCGACTCCTCCGACCG............................................................................. 24 1 4 0.25 1 1 0 0 0 0
................................................................................................................................................................GACTCGTCCGACCGGGAAATTTT.................................................................... 23 1 4 0.25 1 1 0 0 0 0
.......................AAGATTGACTTTACGCGTGAAAT............................................................................................................................................................................................................. 23 0 4 0.25 1 1 0 0 0 0
.......................................................................................................................................................ATCGCCAGCGACTCGTCCGACCGT............................................................................ 24 1 4 0.25 1 1 0 0 0 0
...........................................................................................................................................................CCAGCGACTCGTCCGACCGT............................................................................ 20 0 4 0.25 1 0 0 1 0 0
...............................................................................................................................................AGACCAACTTCGCCAGCGACTCGT.................................................................................... 24 1 4 0.25 1 1 0 0 0 0
.................................TTACGCGTGAAATGCCTCATACTAAA................................................................................................................................................................................................ 26 1 4 0.25 1 1 0 0 0 0
..........................ATTGACTTTACGCGTGAAAT............................................................................................................................................................................................................. 20 0 4 0.25 1 1 0 0 0 0
.............................................................................................................................................................AGCGACTCGTCCGACCGTGAAATTTTT................................................................... 27 0 4 0.25 1 1 0 0 0 0
.................................TTACGCGTGAAATGCCTCATACTAAAG............................................................................................................................................................................................... 27 1 4 0.25 1 1 0 0 0 0
..........................................................................................................................................GGACACGACCAACTTCGCCAGCGAC........................................................................................ 25 0 4 0.25 1 1 0 0 0 0
................................................................................................................................................TACCAACTTCGCCAGCGACTCA..................................................................................... 22 2 4 0.25 1 1 0 0 0 0
...........................................................................................................................................................CCAGCGACTCGTCCGACCGTG........................................................................... 21 0 4 0.25 1 1 0 0 0 0
..........................................................................................................................................GGACACGACCAACTTCGCCAGCGACTTA..................................................................................... 28 2 4 0.25 1 1 0 0 0 0
..................................................................................................................................................CCAACTTCGCCAGCGACTCG..................................................................................... 20 0 4 0.25 1 1 0 0 0 0
..................................TACGCGTGAAATGCCTCATACTAAAGAT............................................................................................................................................................................................. 28 1 4 0.25 1 1 0 0 0 0
..........................................................................................................................................................AAAAGCGACTCGTCCGACCGTGAAAT....................................................................... 26 3 4 0.25 1 1 0 0 0 0
................................................................................................................................................GACCAACTTCGCCAGCGACTCGTCCG................................................................................. 26 0 4 0.25 1 0 1 0 0 0
............................................................................................................................................................CAGCGACTCGTCCGATCGTGAAAT....................................................................... 24 1 4 0.25 1 1 0 0 0 0
......................................................................................................................................................CTTCGCCAGCGACTCGACCGACCGT............................................................................ 25 1 4 0.25 1 1 0 0 0 0
............................................................................................................................................ACACGACCAACTTCGCCAGCGACTCG..................................................................................... 26 0 4 0.25 1 1 0 0 0 0
...............................................................................................................................................................CGACTCGTCCGACCGTGAAATTTTT................................................................... 25 0 4 0.25 1 1 0 0 0 0
..........................................................................................................................................................GCCAGCGACTCGTCCGAACGTGAAAT....................................................................... 26 1 4 0.25 1 1 0 0 0 0
........................................................................................................................................ACGGACACGACCAACTTCGCCAGCGACT....................................................................................... 28 0 4 0.25 1 1 0 0 0 0
..............................................................................................................................................................GCGACTCGTCCGACCGTGAAATTTTT................................................................... 26 0 4 0.25 1 1 0 0 0 0
................................................................................................................................................GACCAACTTCGCCAGCGACTCG..................................................................................... 22 0 4 0.25 1 1 0 0 0 0
.....................................................................................................................................................ACTTCGCCAGCGACTCGTCCGACCGT............................................................................ 26 0 4 0.25 1 1 0 0 0 0
...........................................................................................................................................................CCAGCGACTCGTCCGACCGTGAAATTT..................................................................... 27 0 4 0.25 1 1 0 0 0 0
.......................................................................................................................................................TTCGCCAGCGACTCGTCCGACCG............................................................................. 23 0 4 0.25 1 1 0 0 0 0
.............................GACTTTACGCGTGAAATTCCTCATAC.................................................................................................................................................................................................... 26 2 4 0.25 1 1 0 0 0 0
...................................................................................................................................................CAACTTCGCCAGCGACTCGTCCGAC............................................................................... 25 0 4 0.25 1 1 0 0 0 0
............................................................................................................................................................GAGCGACTCGTCCGACCGTGAAAT....................................................................... 24 1 4 0.25 1 1 0 0 0 0
................................................................................................................................................GACCAACTTCGCCAGCGACT....................................................................................... 20 0 4 0.25 1 0 0 1 0 0
.................................................................................................................................................................ACTCGTCCGACCGTGAAAT....................................................................... 19 0 4 0.25 1 1 0 0 0 0
................................................................................................................................................................GACTCGTCCGAGCGTGAAAT....................................................................... 20 1 4 0.25 1 1 0 0 0 0
................................TTTACGCGTGAAATGCCTCATACT................................................................................................................................................................................................... 24 1 4 0.25 1 1 0 0 0 0
...................................................................................................................................................CAACTTCGCCAGCGACTCGTC................................................................................... 21 0 4 0.25 1 1 0 0 0 0
............................................................................................................................................................CAGCGACTCGTCCGACCGT............................................................................ 19 0 4 0.25 1 0 0 1 0 0
....................................................................................................................................................AACTTCGCCAGCGACTCGTCCGACCCTG........................................................................... 28 1 4 0.25 1 1 0 0 0 0
............................................................................................................................................................AAGCGACTCGTCCGACCGTGAAATTTT.................................................................... 27 1 4 0.25 1 0 0 1 0 0
...............................................................................................................................................................CGACTCGTCCGACCGTGAAATTTT.................................................................... 24 0 4 0.25 1 1 0 0 0 0
...........................................................................................................................................................TCAGCGACTCGTCCGACCGTGAAAT....................................................................... 25 1 4 0.25 1 1 0 0 0 0
............................................................................................................................................................CAGCGACTCGTCCGACCGTGAAATT...................................................................... 25 0 4 0.25 1 1 0 0 0 0
..............................................................................................................................................................GCGACTCGTCCGACCGTGAAATTT..................................................................... 24 0 4 0.25 1 1 0 0 0 0
.........................................................................................................................................................CGCCAGCGACTCGTCCGACCGTGAAATT...................................................................... 28 0 4 0.25 1 1 0 0 0 0
...........................................................................................................................................................CCAGCGACTCGTCCGACCGTGAAATTTT.................................................................... 28 0 4 0.25 1 1 0 0 0 0
....................................................................................................................................GTTTACGGACACGACCAACTTCGC............................................................................................... 24 0 4 0.25 1 1 0 0 0 0
.............................................................................................................................................................AGCGACTCGTCCGACCGTGAAA........................................................................ 22 0 4 0.25 1 1 0 0 0 0
................................................................................................................................................................CACTCGTCCGACCGTGAAAT....................................................................... 20 1 4 0.25 1 1 0 0 0 0
............................................................................................................................................................CAGCGACTCGTCCGAGCGTGAAAT....................................................................... 24 1 4 0.25 1 1 0 0 0 0
...................................................................................................................................TGTTTACGGACACGACCAACTTCGCCA............................................................................................. 27 0 4 0.25 1 1 0 0 0 0
...........................................................................................................................................................CCAGCGACTCGTCCGACCGTGAAA........................................................................ 24 0 4 0.25 1 1 0 0 0 0
.......................................................................................................................................TACGGACACGACCAACTTCGCCAGCGACT....................................................................................... 29 0 4 0.25 1 1 0 0 0 0
.................................TTACGCGTGAAATGCCTCATACT................................................................................................................................................................................................... 23 1 4 0.25 1 1 0 0 0 0
.............................................................................................................................................................AGCGACTCGTCCGACCGTGAA......................................................................... 21 0 4 0.25 1 1 0 0 0 0
............................................................................................................................................ACACGTCCAACTTCGCCAGCGACTCGT.................................................................................... 27 1 4 0.25 1 1 0 0 0 0
..............................................................................................................................................................................................................................TTTACAAAGGGACAAAATTGTCAGGT... 26 0 5 0.20 1 1 0 0 0 0
..............................ACTTTACGCGTGAAATGCCTCAT...................................................................................................................................................................................................... 23 1 5 0.20 1 1 0 0 0 0
..........................ATTGACTTTACGCGTGAAATGCCTCAT...................................................................................................................................................................................................... 27 1 5 0.20 1 1 0 0 0 0
.............................GACTTTACGCGTGAAGTGCCTCAT...................................................................................................................................................................................................... 24 2 5 0.20 1 1 0 0 0 0
.................................................................................................................................................................................................................................ACAAAGGGACAAAATTGTCAGGTCCC 26 0 5 0.20 1 1 0 0 0 0
............................TGACTTTACGCGTGAAGTGCCTCAT...................................................................................................................................................................................................... 25 2 5 0.20 1 1 0 0 0 0
......................................................................................................................................................................................TTCAGGTCAGTCCGTCGT................................................... 18 0 6 0.17 1 1 0 0 0 0
.................CACGGGAAGATTGACTATACGCG................................................................................................................................................................................................................... 23 1 6 0.17 1 1 0 0 0 0
.................................................................................................................................................................AAACGTCCGACCGTGAAAT....................................................................... 19 2 6 0.17 1 1 0 0 0 0
..............................................................................................................................................................................AAAAATTTTTCAGGTCAGTCCGTCGT................................................... 26 2 6 0.17 1 1 0 0 0 0
...............................................................................................................................................................................GAAATTTTTCAGGTCAGTCCGTCT.................................................... 24 1 6 0.17 1 0 1 0 0 0
...................................................................................................................................................................................TTTTTCAGGTCAATCCGTCGT................................................... 21 1 6 0.17 1 1 0 0 0 0
..............................................................................................................................................................................TGAAATTTTTCAGGTCAGTCCGT...................................................... 23 0 6 0.17 1 1 0 0 0 0
..............................................................................................................................................................................AGAAATTTTTCAGGTCAGTCCGTCGT................................................... 26 1 6 0.17 1 1 0 0 0 0
...................................................................................................................................................................................TTTTTCAGGTCACTCCGTCGT................................................... 21 1 6 0.17 1 1 0 0 0 0
..........................................................................................................................................................AAAAGCGACTCGTCCGACCGT............................................................................ 21 3 6 0.17 1 1 0 0 0 0
...............................................................................................................................................................................GAAATTTTTCAGGTCAGT.......................................................... 18 0 6 0.17 1 0 1 0 0 0
..............................................................................................................................................................................AAAAATTTTTCAGGTCAGTCCGTCG.................................................... 25 2 6 0.17 1 1 0 0 0 0
...............................................................................................................................................................................AAAATTTTTCAGGTCAGTCCGTCGT................................................... 25 1 6 0.17 1 1 0 0 0 0
...............................................................................................................................................................................GAAATTTTTCAGGTCATTCCGTCGT................................................... 25 1 6 0.17 1 1 0 0 0 0
..................................................................................................................................................................................AAATTTCAGGTCAGTCCGTCGT................................................... 22 2 7 0.14 1 1 0 0 0 0
......................................................................................................................................................................................................................................AAAACAAAATTGTCAGGTCCC 21 3 7 0.14 1 0 1 0 0 0
..............................................................................................................................................................................................................................TTTACAAAGGGACAAAATTGT........ 21 0 8 0.13 1 1 0 0 0 0
..................................................................................................................................TTGTTTACGGACACGACCAACTT.................................................................................................. 23 0 8 0.13 1 1 0 0 0 0
........................................................................................................................................................................................................................CAGTGTTTTACAAAGGGACAAAATTGT........ 27 1 8 0.13 1 1 0 0 0 0
........................................................................................................................................................................................................................AAAAGTTTTACAAAGGGACAAAATTGT........ 27 3 8 0.13 1 0 0 0 1 0
...................................................................................................................................TGTTTACGGACACGAGCAACTTCG................................................................................................ 24 1 8 0.13 1 1 0 0 0 0
......................................................................................................................................TTACGGACACGACCAACTT.................................................................................................. 19 0 8 0.13 1 1 0 0 0 0
....................................................................................................................................GTTTACGGACAGGACCAACT................................................................................................... 20 1 8 0.13 1 1 0 0 0 0
....................................................................................................................................GTTTACGGACACGACCAACTT.................................................................................................. 21 0 8 0.13 1 1 0 0 0 0
............................................................................................................................................................................................................................GTTTTACAAAGGGACAAAATTG......... 22 0 8 0.13 1 1 0 0 0 0
..............................................................................................................................................ACGACCAACTTCGCCAGCGTCTCGT.................................................................................... 25 1 9 0.11 1 1 0 0 0 0
....................GGGTCGATTGACTTGACGCG................................................................................................................................................................................................................... 20 3 12 0.08 1 0 0 0 0 1
..............................................GTCTCAAGCTTAAGATGAT.......................................................................................................................................................................................... 19 3 17 0.06 1 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_169:12028-12278 + dpe_871 CATGGAGGGAAAAATGAGTGCCCTTCTAACTGA---AATGCGCACTTTACAGAGTATGATTTCTA--CTAAATTGAAATATGAACTATGACCTAAATT--------------------------GCACTTTGTTTT------TCAGATCAACAAAATTCATCAATTAAACAAATGCCTGTGCTGGTTGAAGCGGTCGCTGAGCAGGCTGGCACTTTAAAAAGTCCA--GTCAGGCAGCAAGGACAGGAGCAAAC-GCTCACAAAATGTTTCCCTGTTTTAACAGTCCAGGG
dp5 Unknown_group_77:27237-27487 - CATGGAGGGAACAATTACTGCCCTTCTAACTGA---AATGCGCACTTTACGGAGTATGATTTCTT--TTAACTTGAAATATGAACTATGAACTAAATT--------------------------GTACATTGGTTT------TCAGATCAACAAAATACATCGATTCAACAAATGCCTGTGCTGGTTGAAGCAGTCGCAGAGCAGGCTGGTACTTTAAAAAGTCCA--GTCAGGCAGCAAGGACAGGGGCAAAC-AGTCGCAAAATGTTTCCCTGTTTTAACAGTGCAGGG
droWil2 scf2_1100000004517:31314-31568 + A-----GGCAAAATTGAATATTCTTGTGAAAGA---AATTCATTCTTTAAGAGGTATAAG--TATGATTT------A--ATGAGCTTTTAGTTAAATATGCATACCTATATATATTCAATCT----------AAAT------TTAGCTGACCAAAAAGTGACACAAGAAAAAATCGAGGTCCTTGTAGAAGCTTCCTCCGCGCAGACTGCCACCATAAAAGGAATG--ACAAAGCAGCAAGGACAAGGGCAAAATAGTGGCCGAAAAATTCCCAATTCAGACCGTGCAAGA
droMoj3 scaffold_6500:28274466-28274723 + A-----GGAAAAACTGGATATTTTTGTAGAAGA---AATTCATTCTTTAAGAGGTATAAG--TATGATTT------A--ATGAGCTGTTAATTAAATATTCATACATATATATACTCAATTTAAATATATTAAAAT------TTAGCTGACCGAAAAGTAACACATGAAAAAATC------CTTGTAGAAGCTTCCTCCGAGCAGACTGCCAATCTAAAAGGACTT--ACAAAGCAGTACGGACAAGGACAAAA-AGTGGCTAAACAATTTCCTATACAAACCGTAGAAGC
droBip1 scf7180000392916:232-443 + ATTGGAAGGAAGTATTAAT-----------------------------------------TTTAT--TTATATTGTATTCACATTTACTAATTAAAAT--------------------------TTTTATT-ACTT------TTAGTGGAACACAGTATAACCCACGACCAAATACAAATAGTTGTGGAAGCGCTAGCCGAGCAAAAAACCGATATCAGATTACTTCAGCGAGGTCACATAAATGTGAACGAAC---TGCGAAGCCAGTTCCCAATTAAAAACGGAGAGGA
droKik1 scf7180000299779:6066-6175 + G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTAGTAGAAGCTTCCTCAGAGCAAACAGCCACTGTCAAGGGGATG--ACGAAGCAACAAGGAGAAAGGCAGAA-GGTGGCTAGCAAGTTTCCTGTTCAGACAGTAGGCGA
droFic1 scf7180000454116:45151-45341 + CCTTGAGAAG---ATGATAGTCGATCTAACTGAACTAGTTAGCACCTTACGAG-GGTGATTTTATTGTTT------AATTTGAGCTTTGAATAAAATG--------------------------TTTCTTTCTTTTTTATTTGCTGCCGAAACAAAAGTGTC---------------------TCTTGAAAAAGTTGCCGATGAAGTTCATGCTTTAAGA-------------------------------------------GGTAGTTTCCTGTTCAGACAGTAGGCGA
dm3 chrX:17140834-17140856 - T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCCAGTCTCATCGGATAAGGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
CATGGAGGGAAAAATGAGTGCCCTTCTAACTGA---AATGCGCACTTTACAGAGTATGATTTCTA--CTAAATTGAAATATGAACTATGACCTAAATT--------------------------GCACTTTGTTTT------TCAGATCAACAAAATTCATCAATTAAACAAATGCCTGTGCTGGTTGAAGCGGTCGCTGAGCAGGCTGGCACTTTAAAAAGTCCA--GTCAGGCAGCAAGGACAGGAGCAAAC-GCTCACAAAATGTTTCCCTGTTTTAACAGTCCAGGGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................................................................................................................................................................................TGCTGGTTGAAGCGGTCGCTGA..........................................................................................2240.502020000
......................................................................................................................................................................................................................TTAAAAAGTCCA--GTCAGGC........................................................1960.503300000
................................................................................TGAACTATGACCTAAATT--------------------------GCACT..................................................................................................................................................................2320.501010000
..............................................................................................................................................................................................................................................AAGGACAGGAGCAAAC-GCTCACAA............................2420.501010000
.................................................CAGAGTATGATTTCTA--CTAAATTG........................................................................................................................................................................................................................2420.501010000
................................................................................TGAACTATGACCTAAATT--------------------------G......................................................................................................................................................................1930.331010000
.......................TTCTAACTGA---AATGCGCACTTTACA................................................................................................................................................................................................................................................2530.331010000
.................................................................................................................................................................................TGTGCTGGTTGAAGCGGTC...............................................................................................1940.251010000
...........................................................................................................................................................................................GAAGCGGTCGCTGAGCAG......................................................................................1840.251010000
...............................................................................................................................................................................................CGGTCGCTGAGCAGGCTGGCAA..............................................................................2240.251010000
.........................................................................................................................................................................................TTGAAGCGGTCGCTGAGCAGG.....................................................................................2140.251100000
.......................TTCTAACTGA---AATGCGCACTTTA..................................................................................................................................................................................................................................................2340.251010000
......................................................................................................................................................................................................................TTAAAAAGTCCA--GTCAGGCAGC.....................................................2260.171010000
.....................................................................................................................................................................................................................................................................AAAATGTTTCCCTGTTTTAA..........2080.131010000
dp5
CATGGAGGGAACAATTACTGCCCTTCTAACTGA---AATGCGCACTTTACGGAGTATGATTTCTT--TTAACTTGAAATATGAACTATGAACTAAATT--------------------------GTACATTGGTTT------TCAGATCAACAAAATACATCGATTCAACAAATGCCTGTGCTGGTTGAAGCAGTCGCAGAGCAGGCTGGTACTTTAAAAAGTCCA--GTCAGGCAGCAAGGACAGGGGCAAAC-AGTCGCAAAATGTTTCCCTGTTTTAACAGTGCAGGGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................................TT--TTAACTTGAAATATGAACTATG..........................................................................................................................................................................................................24562.203110000000297140
...............................................................TT--TTAACTTGAAATATGAACTATGAAC.......................................................................................................................................................................................................27547.80239001000023710
............................................................................................................................................................TACATCGATTCAACAAATGCCTGTGC.............................................................................................................26644.5026701901307005700
...............................................................TT--TTAACTTGAAATATGAACTATGA.........................................................................................................................................................................................................25543.60218010000021160
...............................................................TT--TTAACTTGAAATATGAACTATGAA........................................................................................................................................................................................................26534.60173001000017200
............................................................................................................................................................TACATCGATTCAACAAATGCCTGTG..............................................................................................................25633.832030107700008720
.............................................................................................................................................................ACATCGATTCAACAAATGCCTGT...............................................................................................................23616.3398083131000010
.............................................................................................................................................................ACATCGATTCAACAAATGCCTGTGC.............................................................................................................25613.838307580000000
............................................................................................................................................................TACATCGATTCAACAAATGCCTG................................................................................................................23613.3380061102001600
............................................................................................................................................................TACATCGATTCAACAAATGCCTGT...............................................................................................................24612.33740351202012400
.............................................................................................................................................................ACATCGATTCAACAAATGCCTG................................................................................................................22610.676406400000000
......................................................................................................................................................................................TGGTTGAAGCAGTCGCAGAGCAGGC....................................................................................25710.4373037200012490
.................................................CGGAGTATGATTTCTT--TTAACTTG........................................................................................................................................................................................................................24710.007006900001000
.............................................................................................................................................................ACATCGATTCAACAAATGCCTGTG..............................................................................................................2469.335605600000000
.............................................................................................................................................................................................................................................................C-AGTCGCAAAATGTTTCCCTGT...............2268.835304900100300
.............................................................................................................................................................................................................................................................C-AGTCGCAAAATGTTTCCCTGTT..............2368.675204620000310
.............................................................................................................................................................................................................................................................C-AGTCGCAAAATGTTTCCCTGTTT.............2467.174303920000200
...............................................................TT--TTAACTTGAAATATGAACTAT...........................................................................................................................................................................................................2365.833500000003410
................................................................................TGAACTATGAACTAAATT--------------------------GTACAT.................................................................................................................................................................2465.333202700000500
.............................................................................................................................................................................................................................................................C-AGTCGCAAAATGTTTCCCTG................2175.293703110000500
..............................................................................................................................................................CATCGATTCAACAAATGCCTGTGC.............................................................................................................2465.173102700000130
......................................................................................................................................................................................TGGTTGAAGCAGTCGCAGAGCAGG.....................................................................................2474.573202900000300
..............................................................................................................................................................CATCGATTCAACAAATGCCTGTG..............................................................................................................2364.502701900000260
................................................................................TGAACTATGAACTAAATT--------------------------GTACA..................................................................................................................................................................2363.672201800000400
................................................................................TGAACTATGAACTAAATT--------------------------GTACATTGG..............................................................................................................................................................2763.502102100000000
..............................................................................TATGAACTATGAACTAAATT--------------------------GTAC...................................................................................................................................................................2463.332002000001800
.......................................................................................................................................................................................................................TAAAAAGTCCA--GTCAGGCAGCAAGGACG..............................................2813.0030000000030
...............................................................TT--TTAACTTGAAATATGAACTATGAACT......................................................................................................................................................................................................2852.801401000001210
.................................................CGGAGTATGATTTCTT--TTAACTT.........................................................................................................................................................................................................................2372.711901700000200
............................................................................................................................................................TACATCGATTCAACAAATGCCT.................................................................................................................2262.331401120000100
......................................................................ACTTGAAATATGAACTATGAACTAAAT..................................................................................................................................................................................................2762.171300000001120
..............................................................................................................................................................CATCGATTCAACAAATGCCTGT...............................................................................................................2262.001201200000000
.......................................................................................................................................................................................................................TAAAAAGTCCA--GTCAGGCAGCAAGGA................................................2612.0020000000110
...............................................................TT--TTAACTTGAAATATGAACTA............................................................................................................................................................................................................2261.831101000001000
..............................................................................TATGAACTATGAACTAAATT--------------------------GTACAT.................................................................................................................................................................2661.67100600000220
...............................................................................................................................................................ATCGATTCAACAAATGCCTGTGC.............................................................................................................2361.5090720000000
...............................................................................................................................................................................................................................................................AGTCGCAAAATGTTTCCCTGT...............2161.5090900000000
................................................................................TGAACTATGAACTAAATT--------------------------GTACATTG...............................................................................................................................................................2661.5090900000000
.................................................CGGAGTATGATTTCTT--TTAACT..........................................................................................................................................................................................................................2271.43100700000300
......................................................................ACTTGAAATATGAACTATGAACTA.....................................................................................................................................................................................................2461.3380000000350
.............................................................................................................................................................ACATCGATTCAACAAATGCCT.................................................................................................................2161.3380800000000
...............................................................TT--TTAACTTGAAATATGAACT.............................................................................................................................................................................................................2161.3380100000700
......................................................................ACTTGAAATATGAACTATGAACT......................................................................................................................................................................................................2361.3380100000520
............................................................................................................................................................TACATCGATTCAACAAATGCCTGC...............................................................................................................2461.3380080000000
......................................................................ACTTGAAATATGAACTATGAAC.......................................................................................................................................................................................................2271.2990000000720
...............................................................TT--TTAACTTGAAATATGAACTATGAAA.......................................................................................................................................................................................................2751.2060000000600
.............................................................................................................................................................ACATCGATTCAACAAATGCC..................................................................................................................2061.1770520000000
..............................................................................................................................................................CATCGATTCAACAAATGCCTG................................................................................................................2161.1770700000000
...............................................................................................................................................................ATCGATTCAACAAATGCCTGTGCTGG..........................................................................................................2661.1770600100000
................................................................................TGAACTATGAACTAAATT--------------------------GTAC...................................................................................................................................................................2261.1770500000200
..................................................GGAGTATGATTTCTT--TTAACTTG........................................................................................................................................................................................................................2371.1480800000000
.............................................................................................................................................................ACATCGATTCAACAAATGCCTGTGCTG...........................................................................................................2761.0060510000000
.....................................................................................................................................................................................................................................TCAGGCAGCAAGGACAGGG...........................................1911.0010100000000
.............................................................................................................................................................................................................................................CAAGGACAGGGGCAAAC-AGTCGCAAA...........................2611.0010000000010
......................................................................ACTTGAAATATGAACTATGAACTAAA...................................................................................................................................................................................................2661.0060000000600
.................................................CGGAGTATGATTTCTT--TTAACTTGAA......................................................................................................................................................................................................................2671.0070700000000
.......................................................................................................................................................................................................................TAAAAAGTCCA--GTCAGGCAGCAAGG.................................................2511.0010000000010
.....................................................................................................................................................................................................................TTTAAAAAGTCCA--GTCAGGCAGCAAG..................................................2611.0010100000000
.....................................................................................................................................................................................................................................TCAGGCAGCAAGGACAGG............................................1831.0030000000120
...............................................................TT--TTAACTTGAAATATGAACTATGAACA......................................................................................................................................................................................................2851.0050000000500
...............................................................................................................................................................ATCGATTCAACAAATGCCTGT...............................................................................................................2161.0060400000200
....................................................................................................................................................................................................................CTTTAAAAAGTCCA--GTCAGGC........................................................2111.0010010000000
.................................................CGGAGTATGATTTCTT--TTAACTTGAAA.....................................................................................................................................................................................................................2771.0070610000000
......................................................................................................................................................................................TGGTTGAAGCAGTCGCAGAGCAGGCA...................................................................................2671.0070200000500
.............................................................................................................................................................................................................................GTCCA--GTCAGGCAGCAAGGACG..............................................2211.0010100000000
..........................................................................................................................................................................................TGAAGCAGTCGCAGAGCAGG.....................................................................................2070.8660300100200
....................................................................TAACTTGAAATATGAACTATGA.........................................................................................................................................................................................................2270.8660000000510
.................................................CGGAGTATGATTTCTT--TTAACTTGA.......................................................................................................................................................................................................................2570.8660500000100
...............................................................................................................................................................................................................................................................AGTCGCAAAATGTTTCCCTGTT..............2260.8350500000000
................................................................................TGAACTATGAACTAAATT--------------------------GTACATT................................................................................................................................................................2560.8350410000000
............................................................................................................................................................TACATCGATTCAACAAATGCC..................................................................................................................2160.8350210000200
............................................................................................................................................................TACATCGATTCAACAAATGCCTGTGCTG...........................................................................................................2860.8350500000000
..............................................................................................................................................................CATCGATTCAACAAATGCCTGTGCTGG..........................................................................................................2760.8350500000000
................................................................................................TT--------------------------GTACATTGGTTT------TCAGATCAAC...........................................................................................................................................2470.7150100000400
......................................................................................................................................................................................TGGTTGAAGCAGTCGCAGAGCAG......................................................................................2370.7150300002000
.............................................................................................................................................................ACATCGATTCAACAAATGCCTGTGCTGG..........................................................................................................2860.6740400000000
.................................................................................GAACTATGAACTAAATT--------------------------GTACA..................................................................................................................................................................2260.6740400000000
................................................................................TGAACTATGAACTAAATT--------------------------GTACATTGGT.............................................................................................................................................................2860.6740400000000
................................................................................TGAACTATGAACTAAATT--------------------------GTACAA.................................................................................................................................................................2460.6740400000000
...............................................................................................................................CATTGGTTT------TCAGATCAA............................................................................................................................................18120.6782030300000
.............................................................................................................................................................................................................................................................C-AGTCGCAAAATGTTTCCCT.................2070.5740400000000
......................................................................................................................................................................................TGGTTGAAGCAGTCGCAGAGC........................................................................................2170.5740220000000
...............................................................................................................................................................................................................................................................AGTCGCAAAATGTTTCCCTG................2070.5740400000000
................................................................T--TTAACTTGAAATATGAACTTG...........................................................................................................................................................................................................2260.5030000000300
...............................................................................................................................................................ATCGATTCAACAAATGCCTGTGCTG...........................................................................................................2560.5030300000000
...............................................................TT--TTAACTTGAAATATGAAC..............................................................................................................................................................................................................2060.5030000000300
.............................................................................................................................................................ACATCGATTCAACAAATGCCTGC...............................................................................................................2360.5030030000000
...............................................................................................................................................................................................................TGGTACTTTAAAAAGTCCA--GTCAG..........................................................2460.5030100000200
..................................................................................................................................................................GATTCAACAAATGCCTGTGCTG...........................................................................................................2260.5030300000000
..................................................................................................................................................................GATTCAACAAATGCCTGTGCTGGT.........................................................................................................2460.5030300000000
.................................................................................................................................................................CGATTCAACAAATGCCTGTGCTGG..........................................................................................................2460.5030210000000
..............................................................CTT--TTAACTTGAAATATGAACT.............................................................................................................................................................................................................2260.5030000000300
................................................................................................................................................................................................AGTCGCAGAGCAGGCTGGTAC..............................................................................2160.5030300000000
.............................................................................ATATGAACTATGAACTAAATT--------------------------GTACAT.................................................................................................................................................................2760.5030000000210
...............................................................................................................................................................ATCGATTCAACAAATGCCTGTG..............................................................................................................2260.5030300000000
........................................................................TTGAAATATGAACTATGAACTAAAT..................................................................................................................................................................................................2560.5030000000300
.............................................................................................................................................................ACATCGATTCAACAAATGCCTGTGCT............................................................................................................2660.5030300000000
..............................................................................TATGAACTATGAACTAAATT--------------------------GTACA..................................................................................................................................................................2560.5030000000300
..................................................................................................................................................................................................TCGCAGAGCAGGCTGGTACTTTAA.........................................................................2460.5030300000000
..........................................................................................................................................................................................TGAAGCAGTCGCAGAGCAGGCTG..................................................................................2370.4330200000010
.............................................................................................AAATT--------------------------GTACATTGGTTT------TCAG.................................................................................................................................................2170.4330100000200
.................................................CGGAGTATGATTTCTT--TTAACTTGAAAT....................................................................................................................................................................................................................2870.4330300000000
..........................................................................................................................................................................................TGAAGCAGTCGCAGAGCAGGC....................................................................................2170.4330100100100
.........................................................................................................................................................................................TTGAAGCAGTCGCAGAGCAGG.....................................................................................2170.4330100001100
..................................................GGAGTATGATTTCTT--TTAACTTGAA......................................................................................................................................................................................................................2570.4330300000000
......................................................................................................................................................................................TGGTTGAAGCAGTCGCAGAGCAA......................................................................................2370.4330300000000
................................................................T--TTAACTTGAAATATGAACTATGA.........................................................................................................................................................................................................2450.4020000000200
.............................................................TCTT--TTAACTTGAAATATGAACTATGAAC.......................................................................................................................................................................................................2950.4020000000200
................................................................T--TTAACTTGAAATATGAACTATGAA........................................................................................................................................................................................................2550.4020000000200
.......................TTCTAACTGA---AATGCGCACTT....................................................................................................................................................................................................................................................2180.3830210000000
......................................................................ACTTGAAATATGAACTATGAACTCTG...................................................................................................................................................................................................2660.3320000000020
..................................................................................................................................................................................................TCGCAGAGCAGGCTGGTACTTTAAA........................................................................2560.3320200000000
..................................................................................................................................................................................................TCGCAGAGCAGGCTGGTACTTTAT.........................................................................2460.3320200000000
.................................................................................................................................................................................................................................................................TCGCAAAATGTTTCCCTGT...............1960.3320200000000
..................................................................................................................................................................................................TCGCAGAGCAGGCTGGTACTT............................................................................2160.3320200000000
.............................................................................................................................................................ACATCGATTCAACAAATGCCTGTT..............................................................................................................2460.3320110000000
................................................................................................................................................................TCGATTCAACAAATGCCTGTGC.............................................................................................................2260.3320200000000
..............................................................................................................................................................CATCGATTCAACAAATGCCTGTGT.............................................................................................................2460.3320110000000
.............................................................................................................................................................ACATCGATTCAACAAATGCCTGTGCTGGC.........................................................................................................2960.3320020000000
............................................................................................................................................................TACATCGATTCAACAAATGCCTGTGG.............................................................................................................2660.3320200000000
......................................................................ACTTGAAATATGAACTATGAACTAA....................................................................................................................................................................................................2560.3320000000020
..............................................................................................................................................................CATCGATTCAACAAATGCCT.................................................................................................................2060.3320100100000
.............................................................................ATATGAACTATGAACTAAATT--------------------------GTAC...................................................................................................................................................................2560.3320000000200
................................................................................TGAACTATGAACTAAATT--------------------------GTA....................................................................................................................................................................2160.3320100000100
............................................................................................................................................................TACATCGATTCAACAAATGCCTGTGCTGG..........................................................................................................2960.3320200000000
...............................................................................................................................................................................................CAGTCGCAGAGCAGGCTGGT................................................................................2060.3320200000000
.................................................................................................................................................................................................GTCGCAGAGCAGGCTGGTACTT............................................................................2260.3320200000000
.............................................................................ATATGAACTATGAACTAAATT--------------------------GTA....................................................................................................................................................................2460.3320100000010
.....................................................................................TATGAACTAAATT--------------------------GTACATTGGT.............................................................................................................................................................2360.3320200000000
..................................................................................................................................................................................................TCGCAGAGCAGGCTGGTACTTTA..........................................................................2360.3320200000000
.............................................................................................................................................................................................................................................................C-AGTCGCAAAATGTTTCCCTGTTA.............2460.3320200000000
...............................................................................................................................................................................................................................................................AGTCGCAAAATGTTTCCCTGTTT.............2360.3320200000000
..................................................................................................................................................................................................TCGCAGAGCAGGCTGGTACTTTAAAAAG.....................................................................2860.3320200000000
.....................................................................................TATGAACTAAATT--------------------------GTACATTGG..............................................................................................................................................................2260.3320200000000
................................................................................................................................................................................................................................................................GTCGCAAAATGTTTCCCTGTTT.............2260.3320200000000
..................................................................................................................................................................................................TCGCAGAGCAGGCTGGTACT.............................................................................2060.3320200000000
...............................................................................................................................................................ATCGATTCAACAAATGCCTGTGCTGGT.........................................................................................................2760.3320200000000
...............................................................................................................................................................ATCGATTCAACAAATGCCT.................................................................................................................1960.3320200000000
.......................................................................................TGAACTAAATT--------------------------GTACATTGGTTT------TCAGA................................................................................................................................................2860.3320200000000
...............................................................................ATGAACTATGAACTAAATT--------------------------GTAC...................................................................................................................................................................2360.3320100000100
.............................................................................ATATGAACTATGAACTAAATT--------------------------.......................................................................................................................................................................2160.3320000000020
.........................CTAACTGA---AATGCGCACTTTACGGA..............................................................................................................................................................................................................................................2570.2920200000000
............................................................................................TAAATT--------------------------GTACATTGGTTT------TCA..................................................................................................................................................2170.2920000000020
............................................................................................TAAATT--------------------------GTACATTGGTTT------TCAGA................................................................................................................................................2370.2920000000200
.......................TTCTAACTGA---AATGCGCACTTTAC.................................................................................................................................................................................................................................................2470.2920000000200
.........................CTAACTGA---AATGCGCACTTTACGG...............................................................................................................................................................................................................................................2470.2920000000200
...................................................................................................................................................................................TGCTGGTTGAAGCAGTCGCAGAG.........................................................................................2370.2920200000000
...................................................GAGTATGATTTCTT--TTAACTTGAAAT....................................................................................................................................................................................................................2670.2920200000000
.............................................................................................................................................................................TGCCTGTGCTGGTTGAAGCAGTCGC.............................................................................................2570.2920200000000
..........................................................................................................................................................................................TGAAGCAGTCGCAGAGCAGGCT...................................................................................2270.2920200000000
.......................................................................................................................................................................................GGTTGAAGCAGTCGCAGAGCAG......................................................................................2270.2920100000010
............................................................................................TAAATT--------------------------GTACATTGGTTT------TCAGATC..............................................................................................................................................2570.2920000000200
..............................................................................................................................................................................................GCAGTCGCAGAGCAGGCTGG.................................................................................2070.2920200000000
.............................................................................................AAATT--------------------------GTACATTGGTTT------TCAGATC..............................................................................................................................................2470.2920200000000
...................................................................TTAACTTGAAATATGAACTATGA.........................................................................................................................................................................................................2370.2920000000200
....................................................................TAACTTGAAATATGAACTATGAAC.......................................................................................................................................................................................................2470.2920100000100
......................................................................................................................................................................................TGGTTGAAGCAGTCGCAGAGCA.......................................................................................2270.2920200000000
...................................................................................................................................................................................TGCTGGTTGAAGCAGTCGCAGAGCA.......................................................................................2570.2920200000000
.................................................CGGAGTATGATTTCTT--TTAACTTGG.......................................................................................................................................................................................................................2570.2920200000000
........................TCTAACTGA---AATGCGCACTTT...................................................................................................................................................................................................................................................2180.2520000000200
.......................TTCTAACTGA---AATGCGCACTTTA..................................................................................................................................................................................................................................................2380.2520200000000
..................TGCCCTTCTAACTGA---AATGCGC........................................................................................................................................................................................................................................................2280.2520200000000
..............................................................CTT--TTAACTTGAAATATGAACTATGAAC.......................................................................................................................................................................................................2850.2010000000100
...............................................................TT--TTAACTTGAAATATGAACTATGAAT.......................................................................................................................................................................................................2750.2010000000100
................................................................T--TTAACTTGAAATATGAACTATGAAC.......................................................................................................................................................................................................2650.2010000000100
....................................................................................CTATGAACTAAATT--------------------------GTACATTGG..............................................................................................................................................................2360.1710100000000
.....................................................................................TATGAACTAAATT--------------------------GTACATTGC..............................................................................................................................................................2260.1710100000000
...............................................................................................................................................................ATCGATTCAACAAATGCCTG................................................................................................................2060.1710100000000
..................................................................................................................................................................................................................................................................CGCAAAATGTTTCCCTGTTTT............2160.1710100000000
.....................................................................................TATGAACTAAATT--------------------------GTACATTGGTT............................................................................................................................................................2460.1710000000010
..............................................................................TATGAACTATGAACTAAATT--------------------------GT.....................................................................................................................................................................2260.1710100000000
...............................................................................................................................................................................................................................................................AGTCGCAAAATGTTTCCCTGTTTTAACAT.......2960.1710100000000
............................................................................AATATGAACTATGAACTAAATT--------------------------GTACAT.................................................................................................................................................................2860.1710000000010
...............................................................TT--TTAACTTGAAATATGAACA.............................................................................................................................................................................................................2160.1710000000100
...................................................................................................................................................................................................CGCAGAGCAGGCTGGTACTTT...........................................................................2160.1710100000000
................................................................................TGAACTATGAACTAAATT--------------------------GTAA...................................................................................................................................................................2260.1710100000000
................................................................................................................................................................TCGATTCAACAAATGCCTGTG..............................................................................................................2160.1710000000100
..............................................................................................................................................................CATCGATTCAACAAATGCCTGTGCTGGT.........................................................................................................2860.1710100000000
...................................................................TTAACTTGAAATATGAACTATGAACT......................................................................................................................................................................................................2660.1710000000010
.................................................................................................................................................................CGATTCAACAAATGCCTGT...............................................................................................................1960.1710000000100
............................................................................................................................................................TACATCGATTCAACAAATGCCTGTGT.............................................................................................................2660.1710010000000
..................................................................................................................................................................GATTCAACAAATGCCTGTGCTGG..........................................................................................................2360.1710100000000
.............................................................................................................................................................ACATCGATTCAACAAATGCCTGTGCA............................................................................................................2660.1710100000000
..................................................................................................................................................................................................TCGCAGAGCAGGCTGGTACTTT...........................................................................2260.1710100000000
................................................................................TGAACTATGAACTAAATT--------------------------GTACATTGGTT............................................................................................................................................................2960.1710100000000
....................................................................................CTATGAACTAAATT--------------------------GTACATTGGTT............................................................................................................................................................2560.1710100000000
..............................................................................TATGAACTATGAACTAA....................................................................................................................................................................................................1760.1710000000100
..................................................................................................................................................................................................TCGCAGAGCAGGCTGGTACTTTCC.........................................................................2460.1710000000010
..............................................................................TATGAACTATGAACTAAATT--------------------------GTACATT................................................................................................................................................................2760.1710100000000
................................................................................TGAACTATGAACTAAATT--------------------------GT.....................................................................................................................................................................2060.1710100000000
.............................................................................................................................................................................................................................................................C-AGTCGCAAAATGTTTCCCTGTTTTAAC.........2860.1710100000000
................................................................................................................................................................................................................................................................GTCGCAAAATGTTTCCCTGT...............2060.1710100000000
......................................................................................ATGAACTAAATT--------------------------GTACATTGGTA............................................................................................................................................................2360.1710100000000
.............................................................................................................................................................................................................................................................C-AGTCGCAAAATGTTTCCCTGTTTTA...........2660.1710100000000
..........................................................................................................................................................................................................CAGGCTGGTACTTTAAAAAGTCCA--GT.............................................................2660.1710100000000
................................................................................TGAACTATGAACTAAATT--------------------------.......................................................................................................................................................................1860.1710100000000
...............................................................................ATGAACTATGAACTAAATT--------------------------GTACAT.................................................................................................................................................................2560.1710100000000
............................................................................................................................................................TACATCGATTCAACAAATGCCTGTGA.............................................................................................................2660.1710010000000
.................................................................................................................................................................................................GTCGCAGAGCAGGCTGGTAC..............................................................................2060.1710100000000
...............................................................................................................................................................ATCGATTCAACAAATGCCTGTGCTGGC.........................................................................................................2760.1710010000000
...........................................................................................................................................................ATACATCGATTCAACAAATGCCT.................................................................................................................2360.1710100000000
............................................................TTCTT--TTAACTTGAAATATGAA...............................................................................................................................................................................................................2260.1710100000000
..............................................................................................................................................................................................GCAGTCGCAGAGCAGGCTGGT................................................................................2160.1710100000000
....................................................................................................................................................................................................GCAGAGCAGGCTGGTACTTTAAAA.......................................................................2460.1710100000000
...............................................................................................................................................................................................CAGTCGCAGAGCAGGCTGGTA...............................................................................2160.1710100000000
................................................................................................................................................................TCGATTCAACAAATGCCTGTGCTGG..........................................................................................................2560.1710100000000
...........................................................................................................................................................ATACATCGATTCAACAAATGCCTG................................................................................................................2460.1710100000000
.............................................................................ATATGAACTATGAACTAAATT--------------------------GT.....................................................................................................................................................................2360.1710010000000
.................................................................................................................................................................CGATTCAACAAATGCCTGTGC.............................................................................................................2160.1710100000000
...................................................................................................................................................................................................CGCAGAGCAGGCTGGTACTTTAAAAAG.....................................................................2760.1710100000000
..........................................................................................................................................................................................................CAGGCTGGTACTTTAAAAAGTCCC--CC.............................................................2660.1710000000010
..............................................................................................................................................................CATCGATTCAACAAATGCC..................................................................................................................1960.1710100000000
droWil2
A-----GGCAAAATTGAATATTCTTGTGAAAGA---AATTCATTCTTTAAGAGGTATAAG--TATGATTT------A--ATGAGCTTTTAGTTAAATATGCATACCTATATATATTCAATCT----------AAAT------TTAGCTGACCAAAAAGTGACACAAGAAAAAATCGAGGTCCTTGTAGAAGCTTCCTCCGCGCAGACTGCCACCATAAAAGGAATG--ACAAAGCAGCAAGGACAAGGGCAAAATAGTGGCCGAAAAATTCCCAATTCAGACCGTGCAAGASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................................................................................................................................................................................................................AAAAGGAATG--ACAAAGCAGCAAGGA................................................2511.00101000
.................................................AGAGGTATAAG--TATGATTT------A--ATGAGC..............................................................................................................................................................................................................2620.50101000
...........................................................G--TATGATTT------A--ATGAGCTTTTAGT.......................................................................................................................................................................................................2330.33101000
.......................................................ATAAG--TATGATTT------A--ATGAGCTTT...........................................................................................................................................................................................................2330.33101000
...................................................................................................................................................................CAAGAAAAAATCGAGGTCCTTGT.........................................................................................................2340.25100010
.................................................................................................................ATTCAATCT----------AAAT------TTAGCTGACCA..........................................................................................................................................2440.25101000
...............................................................................................................................................................GACACAAGAAAAAATCGAGGTCCTTG..........................................................................................................2640.25101000
droMoj3
A-----GGAAAAACTGGATATTTTTGTAGAAGA---AATTCATTCTTTAAGAGGTATAAG--TATGATTT------A--ATGAGCTGTTAATTAAATATTCATACATATATATACTCAATTTAAATATATTAAAAT------TTAGCTGACCGAAAAGTAACACATGAAAAAATC------CTTGTAGAAGCTTCCTCCGAGCAGACTGCCAATCTAAAAGGACTT--ACAAAGCAGTACGGACAAGGACAAAA-AGTGGCTAAACAATTTCCTATACAAACCGTAGAAGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........................................................................................................................................................................................................................AGGACTT--ACAAAGCAGTACGGACA..............................................2411.001100000
.........................................................................................................................................................................................................................................................................CAATTTCCTATACAAACCG.......1911.001000010
...............................................................................................................................................................AACACATGAAAAAATC------CTTGTAGAAGC...................................................................................................2711.001100000
droBip1
ATTGGAAGGAAGTATTAAT-----------------------------------------TTTAT--TTATATTGTATTCACATTTACTAATTAAAAT--------------------------TTTTATT-ACTT------TTAGTGGAACACAGTATAACCCACGACCAAATACAAATAGTTGTGGAAGCGCTAGCCGAGCAAAAAACCGATATCAGATTACTTCAGCGAGGTCACATAAATGTGAACGAAC---TGCGAAGCCAGTTCCCAATTAAAAACGGAGAGGASizeHit CountTotal NormTotal
No Reads
droKik1
G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTAGTAGAAGCTTCCTCAGAGCAAACAGCCACTGTCAAGGGGATG--ACGAAGCAACAAGGAGAAAGGCAGAA-GGTGGCTAGCAAGTTTCCTGTTCAGACAGTAGGCGASizeHit CountTotal NormTotal
No Reads
droFic1
CCTTGAGAAG---ATGATAGTCGATCTAACTGAACTAGTTAGCACCTTACGAG-GGTGATTTTATTGTTT------AATTTGAGCTTTGAATAAAATG--------------------------TTTCTTTCTTTTTTATTTGCTGCCGAAACAAAAGTGTC---------------------TCTTGAAAAAGTTGCCGATGAAGTTCATGCTTTAAGA-------------------------------------------GGTAGTTTCCTGTTCAGACAGTAGGCGASizeHit CountTotal NormTotal
No Reads
dm3
T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCCAGTCTCATCGGATAAGGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................................................................................................................................................................TCCCAGTCTCATCGGATAAGG.2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000

Generated: 06/08/2015 at 03:23 PM