dpe_87

AACCGTGTTGAAGAAAATGTGTCTCCCACACAAAATGCACATTCGTGCTATATGGCAAACACTTGATTTATGTTATTTTCTAATTCATAAATCTCTTGTCTGCCATACAGCAAAATGTGTGCTCTATCCTGATGCATCCTATGCTGGCTTAGATCAGAAT *********************************.((((((...((((.(((((((.(((...((((((((..(((....))).))))))))...))).))))))).))))....))))))..**********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V111 male body	M042 female body	V050 head	V042 embryo	M021 embryo	V057 head
..................................................TATGGCAAACACTTGATTTATG........................................................................................	22	0	3	66.67	200	121	64	11	3	1	0
..................................................TATGGCAAACACTTGATTTATGT.......................................................................................	23	0	3	42.00	126	119	3	4	0	0	0
..................................................TATGGCAAACACTTGATTTAT.........................................................................................	21	0	3	8.00	24	11	9	4	0	0	0
.......................................................................................TAAATCTCTTGTCTGCCATACA...................................................	22	0	3	7.00	21	6	12	1	1	1	0
.......................................................................................TAAATCTCTTGTCTGCCATA.....................................................	20	0	3	4.67	14	7	7	0	0	0	0
.......................................................................................TAAATCTCTTGTCTGCCATAC....................................................	21	0	3	4.00	12	6	6	0	0	0	0
..................................................TATGGCAAACACTTGATTTATGA.......................................................................................	23	1	3	1.67	5	3	2	0	0	0	0
.......................................................................................TAAATCTCTTGTCTGCCATACT...................................................	22	1	3	1.00	3	2	1	0	0	0	0
..................................................TATGGCAAACACTTGATTTATGTCG.....................................................................................	25	2	3	1.00	3	3	0	0	0	0	0
..................................................TATGGCAAGCACTTGATTTATG........................................................................................	22	1	3	1.00	3	0	3	0	0	0	0
..................................................TATGGCAAACACTTGATTTATGTT......................................................................................	24	0	3	0.67	2	2	0	0	0	0	0
..................................................TATGGCAATCACTTGATTTATG........................................................................................	22	1	3	0.67	2	1	1	0	0	0	0
..................................................TATGGCAAACACTTGATTTATGTC......................................................................................	24	1	3	0.67	2	1	1	0	0	0	0
..................................................TATGGCAAACACTTGATTTATC........................................................................................	22	1	3	0.67	2	0	2	0	0	0	0
...................................................ATGGCAAACACTTGATTTAT.........................................................................................	20	0	3	0.67	2	0	2	0	0	0	0
........................................................................................AAATCTCTTGTCTGCCATAC....................................................	20	0	3	0.67	2	0	2	0	0	0	0
.......................................................................................TAAATCTCTTGTCTGCCATT.....................................................	20	1	3	0.67	2	2	0	0	0	0	0
..................................................TATGGCAAACACTTGATTTATT........................................................................................	22	1	3	0.67	2	1	1	0	0	0	0
..................................................TATGGCAAACACTTGATTTATGAA......................................................................................	24	2	3	0.67	2	1	0	0	1	0	0
..................................................TATGTCAAACACTTGATTTATGT.......................................................................................	23	1	3	0.33	1	1	0	0	0	0	0
...................................................ATGGCAAACACTTGATTTA..........................................................................................	19	0	3	0.33	1	0	1	0	0	0	0
..................................................TTTGGCAAACACTTGATTTAT.........................................................................................	21	1	3	0.33	1	0	0	0	0	1	0
......................................................GCAAACACTTGATTTATGT.......................................................................................	19	0	3	0.33	1	1	0	0	0	0	0
........................................................................................AAATCTCTTGTCTGCCATACCC..................................................	22	2	3	0.33	1	0	1	0	0	0	0
.......................................................................................TAAATCTCTTGTCTGCCATAA....................................................	21	1	3	0.33	1	1	0	0	0	0	0
.......................................................................................TAAATCTCTTGTCTGCCATCT....................................................	21	2	3	0.33	1	1	0	0	0	0	0
........................................................................................AAATCTCTTGTCTGCCATAA....................................................	20	1	3	0.33	1	0	1	0	0	0	0
..................................................TATGGCAAACACTTGATTTATGTCC.....................................................................................	25	2	3	0.33	1	1	0	0	0	0	0
..................................................CATGGCAAACACTTGATTTATG........................................................................................	22	1	3	0.33	1	1	0	0	0	0	0
.......................................................................................TAAATCTCTTGTCTGCCATACCT..................................................	23	2	3	0.33	1	0	1	0	0	0	0
..................................................TATGCCAAACACTTGATTTATG........................................................................................	22	1	3	0.33	1	0	1	0	0	0	0
..................................................TATGGCAAACACTTGATTTATGTCCT....................................................................................	26	2	3	0.33	1	1	0	0	0	0	0
...................................................ATGGCAAACACTTGATTTATG........................................................................................	21	0	3	0.33	1	0	1	0	0	0	0
..................................................TATGACAAACACTTGATTTATGT.......................................................................................	23	1	3	0.33	1	1	0	0	0	0	0
..................................................TATGGCAATCACTTGATTTATGA.......................................................................................	23	2	3	0.33	1	0	1	0	0	0	0
..................................................TATGGCAAACACTTGATTTATGTTAA....................................................................................	26	1	3	0.33	1	1	0	0	0	0	0
..................................................TAGGGCAAACACTTGATTTATGT.......................................................................................	23	1	3	0.33	1	0	0	0	0	0	1
..................................................TATGGCAAACACTTGTTTTATGT.......................................................................................	23	1	3	0.33	1	1	0	0	0	0	0
..................................................TATGGCAAACACTTGATTTACG........................................................................................	22	1	3	0.33	1	0	0	0	1	0	0
..................................................TATGGCAAACACTTGATTT...........................................................................................	19	0	3	0.33	1	1	0	0	0	0	0
.......................................................................................TAAATCTCTTGTCTGCCATC.....................................................	20	1	3	0.33	1	1	0	0	0	0	0
..................................................CATGGCAAACACTTGATCTATG........................................................................................	22	2	3	0.33	1	0	1	0	0	0	0
..................................................TATGGCAAACACTTGATTTATGC.......................................................................................	23	1	3	0.33	1	1	0	0	0	0	0
..................................................TATGGCAAACACTTGATTTATGTTAT....................................................................................	26	0	3	0.33	1	1	0	0	0	0	0
.......................................................................................TAAATCTCTTGTCTGCCAT......................................................	19	0	3	0.33	1	0	1	0	0	0	0
.......................................................................................TAAATCTCTTGTCTGCCATACAA..................................................	23	1	3	0.33	1	0	1	0	0	0	0
..................................................TATGGCAAACACTTGATTTATGTCT.....................................................................................	25	2	3	0.33	1	1	0	0	0	0	0
..................................................TATGGCAACCACTTGATTTATG........................................................................................	22	1	3	0.33	1	0	1	0	0	0	0
..................................................TATGGCAAGCACTTGATTTATGA.......................................................................................	23	2	3	0.33	1	0	1	0	0	0	0
.................................................GTATGGCAAACACATGATTTATG........................................................................................	23	2	3	0.33	1	0	1	0	0	0	0
..................................................TATGGCAAACACTTGATTTATGTTA.....................................................................................	25	0	3	0.33	1	1	0	0	0	0	0
......................................................................................TTAAATCTCTTGTCTGCCATAA....................................................	22	2	4	0.25	1	0	1	0	0	0	0
..................................................TCCGGCAAACACTTGATTTCTG........................................................................................	22	3	5	0.20	1	0	0	1	0	0	0
........................................................................................AAATCTCTAGTCTGCCATAA....................................................	20	2	6	0.17	1	0	1	0	0	0	0
..................................................TATGGCAAACACTTGATTATG.........................................................................................	21	3	9	0.11	1	1	0	0	0	0	0
.......................................................................................TAAATCTCTTGTCTGCCCGT.....................................................	20	3	13	0.08	1	1	0	0	0	0	0

TTGGCACAACTTCTTTTACACAGAGGGTGTGTTTTACGTGTAAGCACGATATACCGTTTGTGAACTAAATACAATAAAAGATTAAGTATTTAGAGAACAGACGGTATGTCGTTTTACACACGAGATAGGACTACGTAGGATACGACCGAATCTAGTCTTA **********************************.((((((...((((.(((((((.(((...((((((((..(((....))).))))))))...))).))))))).))))....))))))..*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V111 male body	V057 head	V050 head	V042 embryo
.......................AGGGTGTGTTTTACGTGTAAG....................................................................................................................	21	0	3	0.67	2	2	0	0	0
..............CTTACACAGAGGGCGTGTT...............................................................................................................................	19	2	3	0.33	1	0	0	1	0
.....................................................................................................................ACACGAGATAGGACGACT.........................	18	2	7	0.29	2	2	0	0	0
............CTCTTACGCAGTGGGTGTGTT...............................................................................................................................	21	3	4	0.25	1	0	1	0	0
...................................................................................................................GCACACGAGATAGGACGAC..........................	19	2	5	0.20	1	0	1	0	0
.....................CGAGGGTGTGCTTTACGTGG.......................................................................................................................	20	3	11	0.09	1	0	0	0	1
................................................ATATATTGTTTGTGAACTA.............................................................................................	19	2	20	0.05	1	0	0	0	1
............................................................................................................TCGTTTTACACCCGTGATAT................................	20	3	20	0.05	1	0	0	0	1

Species	Coordinate	ID	Type	Alignment
droPer2	scaffold_10:2583919-2584078 +	dpe_87	confident	AACCGTGTTGAAGAAAATGTGTCTCCCACACAAAATGCACATTCGTGCTATATGGCAAACACTTGATTTATGTTATTTTCTAATTCATAAATCTCTTGTCTGCCATACAGCAAAATGTGTGCTCTATCCTGATGCATCCTATGCTGGCTTAGATCAGAAT
dp5	4_group4:3553241-3553398 +	dps_14	confident	AACCGTGTTGAGGAAA--GTGTTTCCCCCACCAAATGCACATTCGTGCTATTTGGCAAACACTTGATTTATGTTATTTTCTAATTCATAAATCTCGTATCTGCCATACAGCAAAATGTGTGCTCTATCCTGATGCATCCTATGCTGGCTTAGATCAGAAT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droPer2

AACCGTGTTGAAGAAAATGTGTCTCCCACACAAAATGCACATTCGTGCTATATGGCAAACACTTGATTTATGTTATTTTCTAATTCATAAATCTCTTGTCTGCCATACAGCAAAATGTGTGCTCTATCCTGATGCATCCTATGCTGGCTTAGATCAGAAT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..................................................TATGGCAAACACTTGATTTATG........................................................................................	22	3	66.67	200	1	64	3	11	0	121
..................................................TATGGCAAACACTTGATTTATGT.......................................................................................	23	3	42.00	126	0	3	0	4	0	119
..................................................TATGGCAAACACTTGATTTAT.........................................................................................	21	3	8.00	24	0	9	0	4	0	11
.......................................................................................TAAATCTCTTGTCTGCCATACA...................................................	22	3	7.00	21	1	12	1	1	0	6
.......................................................................................TAAATCTCTTGTCTGCCATA.....................................................	20	3	4.67	14	0	7	0	0	0	7
.......................................................................................TAAATCTCTTGTCTGCCATAC....................................................	21	3	4.00	12	0	6	0	0	0	6
..................................................TATGGCAAACACTTGATTTATGA.......................................................................................	23	3	1.67	5	0	2	0	0	0	3
.......................................................................................TAAATCTCTTGTCTGCCATACT...................................................	22	3	1.00	3	0	1	0	0	0	2
..................................................TATGGCAAACACTTGATTTATGTCG.....................................................................................	25	3	1.00	3	0	0	0	0	0	3
..................................................TATGGCAAACACTTGATTTATGTT......................................................................................	24	3	0.67	2	0	0	0	0	0	2
..................................................TATGGCAAACACTTGATTTATGTC......................................................................................	24	3	0.67	2	0	1	0	0	0	1
..................................................TATGGCAAACACTTGATTTATC........................................................................................	22	3	0.67	2	0	2	0	0	0	0
...................................................ATGGCAAACACTTGATTTAT.........................................................................................	20	3	0.67	2	0	2	0	0	0	0
........................................................................................AAATCTCTTGTCTGCCATAC....................................................	20	3	0.67	2	0	2	0	0	0	0
.......................................................................................TAAATCTCTTGTCTGCCATT.....................................................	20	3	0.67	2	0	0	0	0	0	2
..................................................TATGGCAAACACTTGATTTATT........................................................................................	22	3	0.67	2	0	1	0	0	0	1
..................................................TATGGCAAACACTTGATTTATGAA......................................................................................	24	3	0.67	2	0	0	1	0	0	1
...................................................ATGGCAAACACTTGATTTA..........................................................................................	19	3	0.33	1	0	1	0	0	0	0
......................................................GCAAACACTTGATTTATGT.......................................................................................	19	3	0.33	1	0	0	0	0	0	1
........................................................................................AAATCTCTTGTCTGCCATACCC..................................................	22	3	0.33	1	0	1	0	0	0	0
.......................................................................................TAAATCTCTTGTCTGCCATAA....................................................	21	3	0.33	1	0	0	0	0	0	1
.......................................................................................TAAATCTCTTGTCTGCCATCT....................................................	21	3	0.33	1	0	0	0	0	0	1
........................................................................................AAATCTCTTGTCTGCCATAA....................................................	20	3	0.33	1	0	1	0	0	0	0
..................................................TATGGCAAACACTTGATTTATGTCC.....................................................................................	25	3	0.33	1	0	0	0	0	0	1
.......................................................................................TAAATCTCTTGTCTGCCATACCT..................................................	23	3	0.33	1	0	1	0	0	0	0
...................................................ATGGCAAACACTTGATTTATG........................................................................................	21	3	0.33	1	0	1	0	0	0	0
..................................................TATGGCAAACACTTGATTTATGTTAA....................................................................................	26	3	0.33	1	0	0	0	0	0	1
..................................................TATGGCAAACACTTGATTT...........................................................................................	19	3	0.33	1	0	0	0	0	0	1
.......................................................................................TAAATCTCTTGTCTGCCATC.....................................................	20	3	0.33	1	0	0	0	0	0	1
..................................................TATGGCAAACACTTGATTTATGC.......................................................................................	23	3	0.33	1	0	0	0	0	0	1
..................................................TATGGCAAACACTTGATTTATGTTAT....................................................................................	26	3	0.33	1	0	0	0	0	0	1
.......................................................................................TAAATCTCTTGTCTGCCAT......................................................	19	3	0.33	1	0	1	0	0	0	0
.......................................................................................TAAATCTCTTGTCTGCCATACAA..................................................	23	3	0.33	1	0	1	0	0	0	0
..................................................TATGGCAAACACTTGATTTATGTCT.....................................................................................	25	3	0.33	1	0	0	0	0	0	1
..................................................TATGGCAAACACTTGATTTATGTTA.....................................................................................	25	3	0.33	1	0	0	0	0	0	1
..................................................TATGGCAAACACTTGATTATG.........................................................................................	21	9	0.11	1	0	0	0	0	0	1
.......................................................................................TAAATCTCTTGTCTGCCCGT.....................................................	20	13	0.08	1	0	0	0	0	0	1

dp5

AACCGTGTTGAGGAAA--GTGTTTCCCCCACCAAATGCACATTCGTGCTATTTGGCAAACACTTGATTTATGTTATTTTCTAATTCATAAATCTCGTATCTGCCATACAGCAAAATGTGTGCTCTATCCTGATGCATCCTATGCTGGCTTAGATCAGAAT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..................................................TTTGGCAAACACTTGATTTATG........................................................................................	22	1	2529.00	2529	24	605	24	110	5	60	219	3	1479	0
.......................................................................................TAAATCTCGTATCTGCCATACA...................................................	22	1	1200.00	1200	0	34	0	3	1	5	13	0	1144	0
..................................................TTTGGCAAACACTTGATTTAT.........................................................................................	21	1	459.00	459	2	72	2	15	0	13	53	0	302	0
.......................................................................................TAAATCTCGTATCTGCCATAC....................................................	21	1	380.00	380	0	12	2	7	0	6	35	0	318	0
.......................................................................................TAAATCTCGTATCTGCCATA.....................................................	20	1	171.00	171	0	4	0	2	0	2	19	0	144	0
..................................................TTTGGCAAACACTTGATTTATGT.......................................................................................	23	1	131.00	131	1	20	1	1	0	3	54	0	51	0
..................................................TTTGGCAAACACTTGATTTATGA.......................................................................................	23	1	89.00	89	0	11	0	0	0	2	7	0	69	0
...................................................TTGGCAAACACTTGATTTATG........................................................................................	21	1	56.00	56	0	35	0	0	0	1	0	0	20	0
..................................................TTTGGCAAACACTTGATTTA..........................................................................................	20	1	36.00	36	0	6	0	2	0	2	5	0	21	0
..................................................TTTGGCAAACACTTGATTTATT........................................................................................	22	1	36.00	36	0	6	0	3	0	1	2	0	24	0
.......................................................................................TAAATCTCGTATCTGCCATACAA..................................................	23	1	23.00	23	0	2	0	0	0	0	0	0	21	0
..................................................TTTGGCAAACACTTGATTTATGTC......................................................................................	24	1	23.00	23	0	1	0	1	0	1	12	0	8	0
.......................................................................................TAAATCTCGTATCTGCCATACC...................................................	22	1	21.00	21	0	1	0	2	0	0	1	0	17	0
.......................................................................................TAAATCTCGTATCTGCCATAA....................................................	21	1	19.00	19	0	0	0	0	0	2	0	0	17	0
...................................................TTGGCAAACACTTGATTTAT.........................................................................................	20	1	17.00	17	0	9	0	0	0	0	1	0	7	0
..................................................TTTGGCAAACACTTGATTTATC........................................................................................	22	1	16.00	16	0	1	0	3	0	1	2	0	9	0
..................................................TTTGGCAAACACTTGATTTAA.........................................................................................	21	1	12.00	12	0	3	0	0	0	0	2	0	7	0
.................................................ATTTGGCAAACACTTGATTTATG........................................................................................	23	1	12.00	12	1	0	0	0	0	0	0	0	11	0
..................................................TTTGGCAAACACTTGATTTATGAA......................................................................................	24	1	9.00	9	0	0	0	0	0	0	1	0	8	0
.......................................................................................TAAATCTCGTATCTGCCAT......................................................	19	1	9.00	9	0	0	0	0	0	0	0	0	9	0
..................................................TTTGGCAAACACTTGATTTATGC.......................................................................................	23	1	8.00	8	0	0	1	2	0	0	0	0	5	0
..................................................TTTGGCAAACACTTGATTTATGTT......................................................................................	24	1	7.00	7	0	2	0	2	0	0	2	0	1	0
..................................................TTTGGCAAACACTTGATTTATA........................................................................................	22	1	7.00	7	0	0	0	0	0	0	2	0	5	0
.......................................................................................TAAATCTCGTATCTGCCATT.....................................................	20	1	7.00	7	0	1	0	0	0	0	0	0	6	0
..................................................TTTGGCAAACACTTGATTTATGTCG.....................................................................................	25	1	6.00	6	0	2	0	0	0	1	1	0	2	0
.......................................................................................TAAATCTCGTATCTGCCATAT....................................................	21	1	6.00	6	0	0	0	0	0	0	0	0	6	0
.......................................................................................TAAATCTCGTATCTGCCATACTAA.................................................	24	1	6.00	6	0	0	0	0	0	0	0	0	6	0
..................................................TTTGGCAAACACTTGATTT...........................................................................................	19	1	6.00	6	0	1	0	0	0	1	0	0	4	0
.........................................................................TATTTTCTAATTCATAA......................................................................	17	2	5.50	11	0	0	0	0	0	0	0	0	11	0
................................................................................TAATTCATAAATCTCGTATCTGCCAT......................................................	26	1	5.00	5	0	0	0	0	0	0	0	0	5	0
..................................................TTTGGCAAACACTTGATTTATGTG......................................................................................	24	1	5.00	5	0	0	0	0	0	0	0	0	5	0
.................................................ATTTGGCAAACACTTGATTTAT.........................................................................................	22	1	5.00	5	0	0	0	0	0	0	0	0	5	0
..................................................TTTGGCAAACACTTGATTTATGTCC.....................................................................................	25	1	5.00	5	0	1	0	2	0	0	0	0	2	0
.......................................................................................TAAATCTCGTATCTGCCATACT...................................................	22	1	5.00	5	0	0	0	0	0	0	0	0	5	0
..................................................TTTGGCAAACACTTGATTTATGTTTGG...................................................................................	27	1	4.00	4	0	0	0	0	0	0	0	0	4	0
....................................................................................TCATAAATCTCGTATCTGCCATAC....................................................	24	1	4.00	4	0	0	0	0	0	0	0	0	4	0
....................................................................................TCATAAATCTCGTATCTGCCATACC...................................................	25	1	4.00	4	0	0	0	0	0	0	0	0	4	0
..................................................TTTGGCAAACACTTGATTTATGTTAA....................................................................................	26	1	3.00	3	0	0	0	0	0	0	0	0	3	0
..................................................TTTGGCAAACACTTGATTTATGTCCC....................................................................................	26	1	3.00	3	0	0	0	1	0	0	0	0	2	0
................................................................................TAATTCATAAATCTCGTATCTGCCATA.....................................................	27	1	3.00	3	0	0	0	1	0	0	1	0	1	0
........................................................................................AAATCTCGTATCTGCCATACA...................................................	21	1	3.00	3	0	2	0	0	0	0	0	0	1	0
..................................................TTTGGCAAACACTTGATTTATGTCT.....................................................................................	25	1	2.00	2	0	1	0	0	0	0	1	0	0	0
....................................................................................TCATAAATCTCGTATCTGCC........................................................	20	1	2.00	2	0	1	0	0	0	0	0	0	1	0
................................................................................TAATTCATAAATCTCGTATCTGT.........................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	2	0
..................................................TTTGGCAAACACTTGATTTATGTTAT....................................................................................	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...................................................TTGGCAAACACTTGATTTATGT.......................................................................................	22	1	2.00	2	0	1	0	0	0	0	0	0	1	0
........................................................................................AAATCTCGTATCTGCCATAC....................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	2	0
..................................................TTTGGCAAACACTTGATTTATTA.......................................................................................	23	2	2.00	4	0	0	0	0	0	0	0	0	4	0
....................................................................................TCATAAATCTCGTATCTGCCATACAAA.................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	2	0
..................................................TTTGGCAAACACTTGATTTATTC.......................................................................................	23	1	2.00	2	0	0	0	0	0	0	1	0	1	0
..................................................TTTGGCAAACACTTGATTTATCG.......................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	2	0
................................................................................TAATTCATAAATCTCGTATCTGCCATAC....................................................	28	1	2.00	2	0	0	0	0	0	0	0	0	2	0
........................................................................................AAATCTCGTATCTGCCATA.....................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	2	0
.......................................................................................TAAATCTCGTATCTGCCA.......................................................	18	1	2.00	2	0	0	0	1	0	0	0	0	1	0
....................................................................................TCATAAATCTCGTATCTGCCATACAA..................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	2	0
..................................................TTTGGCAAACACTTGATTTATGTA......................................................................................	24	1	2.00	2	0	0	0	0	0	0	1	0	1	0
..................................................TTTGGCAAACACTTGATTTT..........................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	2	0
..............................................................................TCTAATTCATAAATCTCGTATCTG..........................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	2	0
...................................................................................TTCATAAATCTCGTATCTGCCATA.....................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	2	0
...................................................TTGGCAAACACTTGATTTATGA.......................................................................................	22	1	2.00	2	0	1	0	0	0	0	0	0	1	0
.......................................................................................TAAATCTCGTATCTGCCATC.....................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	2	0
....................................................................................TCATAAATCTCGTATCTGCCAT......................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	2	0
....................................................................................TCATAAATCTCGTATCTGCCATACA...................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	2	0
................................................................................TAATTCATAAATCTCGTATCTG..........................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	2	0
..................................................TTTGGCAAACACTTGATTTATGTTATT...................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	2	0
...........................................................................TTTTCTAATTCATAA......................................................................	15	3	1.33	4	0	0	0	0	0	0	0	0	4	0
..................................................TTTGGCAAACACTTGATTTATGTCCG....................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................TGGCAAACACTTGATTTATG........................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	1	0
..................................................TTTGGCAAACACTTGATTTATGTAG.....................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.....................................................................................CATAAATCTCGTATCTGCCATACA...................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.....................................................GGCAAACACTTGATTTATGTCG.....................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.................................................ATTTGGCAAACACTTGAT.............................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.........................................................................................AATCTCGTATCTGCCATA.....................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	1	0
....................................................TGGCAAACACTTGATTTATGT.......................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.......................................................................................TAAATCTCGTATCTGCCATATT...................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.......................................................................................TAAATCTCGTATCTGCCATACATTC................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0
................................................................................TAATTCATAAATCTCGTATCTGC.........................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	1	0
..................................................TTTGGCAAACACTTGATTTATCA.......................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	1	0
..................................................TTTGGCAAACACTTGATTTATGTTA.....................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................ATTTGGCAAACACTTGATTTATGTA......................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0
................................................................................TAATTCATAAATCTCGTATCTGCCA.......................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0
..................................................TTTGGCAAACACTTGATT............................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	1	0
...................................................TTGGCAAACACTTGATTTATGTTAT....................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................TTGGCAAACACTTGATTTA..........................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	1	0
....................................................TGGCAAACACTTGATTTAT.........................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................TAAATCTCGTATCTGCCATACTC..................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................TTTGGCAAACACTTGATTTATAA.......................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.................................................ATTTGGCAAACACTTGATTTATT........................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	1	0
................................................................................TAATTCATAAATCTCGTATCTGCCC.......................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0
......................................................GCAAACACTTGATTTATGTTTG....................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	1	0
................................................................................TAATTCATAAATCTCGTATCTGCC........................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	1	0
............................................................................................CTCGTATCTGCCATACA...................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	1	0
...................................................TTGGCAAACACTTGATT............................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.......................................................................................TAAATCTCGTATCTG..........................................................	15	1	1.00	1	0	0	0	0	0	0	0	0	1	0
...................................................TTGGCAAACACTTGATTTATC........................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................TAAATCTCGTATCTGCCATACCA..................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	1	0
..............................................................................TCTAATTCATAAATCTCGTATCTGCC........................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	1	0
..................................................TTTGGCAAACACTTGATTTATGG.......................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	1	0
..................................................TTTGGCAAACACTTGATTTATCCC......................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.....................................................GGCAAACACTTGATTTATG........................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................TTTGGCAAACACTTGATTTATGTTATTT..................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	1	0
......................................................................................ATAAATCTCGTATCTGCCATAC....................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	1	0
................................................................................TAATTCATAAATCTCGTAT.............................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.......................................................................................TAAATCTCGTATCTGCCATAG....................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0
....................................................................................TCATAAATCTCGTATCTGCCATACCA..................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	1	0
..............................................................................TCTAATTCATAAATCTCGTATCTGC.........................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.................................................ATTTGGCAAACACTTGATTTATAAA......................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0
..................................................TTTGGCAAACACTTGATTTATAG.......................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	1	0
......................................................................................ATAAATCTCGTATCTGCCATACA...................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	1	0
..................................................TTTGGCAAACACTTGATTTATGTTCC....................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.......................................................................................TAAATCTCGTATCTGCCATAAC...................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	1	0
..................................................TTTGGCAAACACTTGAT.............................................................................................	17	2	0.50	1	0	0	0	0	0	0	0	0	1	0
.........................................................AACACTTGATTTATG........................................................................................	15	3	0.33	1	0	0	0	0	0	0	0	0	1	0
..................................................TTTGGCAAACACTTGATTAT..........................................................................................	20	5	0.20	1	0	0	0	0	0	0	0	0	1	0
.................................................ATTTGGCAAACACTT................................................................................................	15	5	0.20	1	0	0	0	0	0	0	0	0	1	0
..................................................TTTGGCAAACACTTGATTATG.........................................................................................	21	13	0.08	1	0	0	0	0	0	0	0	0	1	0

dpe_87

scaffold_10:2583969-2584028 +

confident

Testes-restricted

intergenic

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads