ID:

dpe_865

 Coordinate:

scaffold_160:70208-70358 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.8 -13.6 -13.6 -13.4

Flybase annnotation

CDS [Dper\GL14789-cds]; exon [dper_GLEANR_15598:2]; intron [Dper\GL14789-in]

No Repeatable elements found

mature
  1. dpe_865  scaffold_160:70220-70237 +
  2. scaffold_78:25556-25573 -
  3. scaffold_581:228-245 +
  4. scaffold_581:10645-10662 +
  5. scaffold_202:39340-39357 +
  6. scaffold_205:27644-27661 +
star
  1. scaffold_142:45910-45927 +
  2. dpe_865  scaffold_160:70289-70306 +
  3. scaffold_175:9200-9217 +
  4. scaffold_76:203091-203108 +
  5. scaffold_64:130631-130648 +
  6. scaffold_90:155352-155369 +
  7. scaffold_10847:418-435 +
  8. scaffold_924:5629-5646 +
  9. scaffold_98:58233-58250 +
  10. scaffold_3068:1019-1036 +
  11. scaffold_418:10780-10797 +
  12. scaffold_376:2302-2319 +
  13. scaffold_376:6918-6935 +
  14. scaffold_376:15971-15988 +
  15. scaffold_3577:903-920 +
  16. scaffold_1381:1599-1616 +
  17. scaffold_2155:277-294 +
  18. scaffold_2512:1165-1182 +
  19. scaffold_202:52699-52716 +
  20. scaffold_9833:658-675 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CACCCCAGCCGCTAAGAAACAGCTCAAGTGGCAGCAGGTGGAGGAGCCCCGTGAGTGCGAGCCAAGGCCAGACGCGATAATCATTGAACCCCAGGGCGAGCTTAGCTTTAGCGACATCCTCCGTATGGTCGTTCTCTTTCGTAGTGATCAGACCCGTTTTTGTTTTGCGCTCCGCATTTTTTCCTTTTGTTTTGAATAAACAGCCGGTATTTTCCTAAATAAACTTTAATCAACTTCCTAACCAGCCTAAC
**************************************************************...((.............((((((......((((((......(((...(((........)))..)))))))))......))))))))****************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 V042
embryo
 M021
embryo
............TAAGAAACAGCTCAAGTGGCAGCAGG..................................................................................................................................................................................................................... 26 0 5 1.60 8 7 1 0
.................................................................................................................................................................................................................................TTAATCAACTTCCTAACCAGCC.... 22 0 3 0.33 1 1 0 0
.............AAGAAACAGCTCAAGTGGCAGCAGG..................................................................................................................................................................................................................... 25 0 5 0.20 1 1 0 0
.................AACAGCTCAAGTGGCAGCAGGTGG.................................................................................................................................................................................................................. 24 0 6 0.17 1 1 0 0
.................AACAGCTCAAGTGGCAGCAGGTG................................................................................................................................................................................................................... 23 0 6 0.17 1 1 0 0
..............................................................CAAGGCCAGACGCGATAA........................................................................................................................................................................... 18 0 6 0.17 1 1 0 0
......................................................................................................................................................................................CCTTTTGTTTTGAATAAACAGCC.............................................. 23 0 20 0.10 2 2 0 0
...............................CACCAGGTGGAGGAGCGC.......................................................................................................................................................................................................... 18 2 19 0.05 1 1 0 0
...................................................................................................................................TTCTCTTTCGTAGTGATC...................................................................................................... 18 0 20 0.05 1 0 0 1
.................................................................................................................................................................................................................................TTAATAACCTTCCTAACCAGCCT... 23 2 20 0.05 1 1 0 0

Anti-sense strand reads

GTGGGGTCGGCGATTCTTTGTCGAGTTCACCGTCGTCCACCTCCTCGGGGCACTCACGCTCGGTTCCGGTCTGCGCTATTAGTAACTTGGGGTCCCGCTCGAATCGAAATCGCTGTAGGAGGCATACCAGCAAGAGAAAGCATCACTAGTCTGGGCAAAAACAAAACGCGAGGCGTAAAAAAGGAAAACAAAACTTATTTGTCGGCCATAAAAGGATTTATTTGAAATTAGTTGAAGGATTGGTCGGATTG
******************************************************************************************************...((.............((((((......((((((......(((...(((........)))..)))))))))......))))))))************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M021
embryo
 M042
female body
 V042
embryo
 V057
head
 V111
male body
..........................................................CTCGGTTCCGGTCTGCGCTATT........................................................................................................................................................................... 22 0 6 60.00 360 340 18 2 0 0
........................................................CGCTCGGTTCCGGTCTGCGCTATT........................................................................................................................................................................... 24 0 6 19.00 114 79 34 1 0 0
.........................................................GCTCGGTTCCGGTCTGCGCTATT........................................................................................................................................................................... 23 0 6 11.67 70 53 12 5 0 0
.........................................................CCTCGGTTCCGGTCTGCGCTATT........................................................................................................................................................................... 23 1 6 9.00 54 54 0 0 0 0
............................................................CGGTTCCGGTCTGCGCTATT........................................................................................................................................................................... 20 0 6 8.33 50 45 4 1 0 0
.............................................................GGTTCCGGTCTGCGCTATT........................................................................................................................................................................... 19 0 6 8.17 49 44 2 3 0 0
...........................................................TCGGTTCCGGTCTGCGCTATT........................................................................................................................................................................... 21 0 6 7.00 42 39 3 0 0 0
.....................................................AAAAGCTCGGTTCCGGTCTGCGCTATT........................................................................................................................................................................... 27 3 1 3.00 3 3 0 0 0 0
........GGCGATTCTTTGTCGAGTTCACCGT.......................................................................................................................................................................................................................... 25 0 6 1.67 10 1 7 2 0 0
.........................................................GCTCGGTTCCGGTCTGCGCTAT............................................................................................................................................................................ 22 0 7 1.14 8 0 7 1 0 0
......................................................CACGCTCGGTTCCGGTCTGCGCTATT........................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0
..........................................................CTCGGTTCCGGTCTGCGCTATTAGT........................................................................................................................................................................ 25 0 6 1.00 6 5 1 0 0 0
..................................GTCCACCTCCTCGGGGCACT..................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0
...........................................................CCGGTTCCGGTCTGCGCTATT........................................................................................................................................................................... 21 1 6 1.00 6 5 1 0 0 0
.............................................................................................................................ACCAGCAAGAGAAAGCATCACTAGTCT................................................................................................... 27 0 1 1.00 1 0 1 0 0 0
.......................................................ACGCTCGGTTCCGGTCTGCGCTAT............................................................................................................................................................................ 24 0 1 1.00 1 0 1 0 0 0
.........................................................................................................................................................................................................................TTATTTGAAATTAGTTGAAGGA............ 22 0 1 1.00 1 0 1 0 0 0
.........................................................TCTCGGTTCCGGTCTGCGCTATT........................................................................................................................................................................... 23 1 6 1.00 6 5 1 0 0 0
........................................................CGCTCGGTTCCGGTCTGCGCTAT............................................................................................................................................................................ 23 0 7 0.86 6 0 6 0 0 0
.......CGGCGATTCTTTGTCGAGTTCACCGT.......................................................................................................................................................................................................................... 26 0 6 0.83 5 0 4 1 0 0
........................................................AGCTCGGTTCCGGTCTGCGCTATT........................................................................................................................................................................... 24 1 6 0.83 5 2 2 1 0 0
........................................................TGCTCGGTTCCGGTCTGCGCTATT........................................................................................................................................................................... 24 1 6 0.83 5 3 2 0 0 0
..........................................................ATCGGTTCCGGTCTGCGCTATT........................................................................................................................................................................... 22 1 6 0.83 5 4 1 0 0 0
..........................................................CTCGGTTCCGGTCTGCGCTAT............................................................................................................................................................................ 21 0 7 0.71 5 5 0 0 0 0
............................................................AGGTTCCGGTCTGCGCTATT........................................................................................................................................................................... 20 1 6 0.67 4 3 1 0 0 0
........................................................GGCTCGGTTCCGGTCTGCGCTATT........................................................................................................................................................................... 24 1 6 0.67 4 4 0 0 0 0
..........................................................TTCGGTTCCGGTCTGCGCTATT........................................................................................................................................................................... 22 1 6 0.67 4 3 1 0 0 0
..GGGGTCGGCGATTCTTTGTCGAGT................................................................................................................................................................................................................................. 24 0 9 0.67 6 0 6 0 0 0
..........................................................CTCGGTTCCGGTCTGCGCTATTAG......................................................................................................................................................................... 24 0 6 0.67 4 4 0 0 0 0
.............................................................GGTTCCGGTCTGCGCTATTAGTAAAT.................................................................................................................................................................... 26 1 6 0.67 4 4 0 0 0 0
.........................................................ACTCGGTTCCGGTCTGCGCTATT........................................................................................................................................................................... 23 1 6 0.50 3 2 1 0 0 0
........................................................CCCTCGGTTCCGGTCTGCGCTATT........................................................................................................................................................................... 24 1 6 0.50 3 3 0 0 0 0
...........................................................TCGGTTCCGGTCTGCGCTATTAG......................................................................................................................................................................... 23 0 6 0.50 3 0 3 0 0 0
....................................................................................................................................TGAGAAAGCATCACTAGTCTGGGCAA............................................................................................. 26 1 2 0.50 1 0 1 0 0 0
........................................................AACTCGGTTCCGGTCTGCGCTATT........................................................................................................................................................................... 24 2 6 0.50 3 3 0 0 0 0
............................................................CAGTTCCGGTCTGCGCTATT........................................................................................................................................................................... 20 1 6 0.50 3 3 0 0 0 0
.........GCGATTCTTTGTCGAGTTCACCGT.......................................................................................................................................................................................................................... 24 0 6 0.50 3 0 1 2 0 0
.......AGGCGATTCTTTGTCGAGTTCACCGT.......................................................................................................................................................................................................................... 26 1 6 0.50 3 3 0 0 0 0
.............................................................GGTTCCGGTCTGCGCTAT............................................................................................................................................................................ 18 0 7 0.43 3 2 1 0 0 0
...........................................................TCGGTTCCGGTCTGCGCTAT............................................................................................................................................................................ 20 0 7 0.43 3 0 3 0 0 0
.............................................................GGTGCCGGTCTGCGCTATT........................................................................................................................................................................... 19 1 6 0.33 2 2 0 0 0 0
........................................................TCCTCGGTTCCGGTCTGCGCTATT........................................................................................................................................................................... 24 2 6 0.33 2 2 0 0 0 0
..........................................................CTCGGTTCCAGTCTGCGCTATT........................................................................................................................................................................... 22 1 6 0.33 2 2 0 0 0 0
..........................................................CTCGGTTCCGGTCTGCCCTATT........................................................................................................................................................................... 22 1 6 0.33 2 2 0 0 0 0
.......................................................................................................................................GAAAGCATCACTAGTCTAGGCAAAAAC......................................................................................... 27 1 3 0.33 1 0 1 0 0 0
.............................................................GGTTCCGGTCTGCGCTATTAGT........................................................................................................................................................................ 22 0 6 0.33 2 0 2 0 0 0
...........................................................GCGGTTCCGGTCTGCGCTATT........................................................................................................................................................................... 21 1 6 0.33 2 2 0 0 0 0
........................................................CGCTCGGTTCCGGTCAGCGCTATT........................................................................................................................................................................... 24 1 6 0.33 2 0 2 0 0 0
..............................................................GTTCCGGTCTGCGCTATT........................................................................................................................................................................... 18 0 6 0.33 2 0 2 0 0 0
.............................................................GGTTCCGGTCTGCGCTATTAG......................................................................................................................................................................... 21 0 6 0.33 2 1 1 0 0 0
........................................................CGCTCGGTTCCGGTCTGCGCTA............................................................................................................................................................................. 22 0 7 0.29 2 0 2 0 0 0
..GGGGTCGGCGATTCTTTGTCGAGTT................................................................................................................................................................................................................................ 25 0 9 0.22 2 0 2 0 0 0
GTGGGGTCGGCGATTCTTTGTCGAGT................................................................................................................................................................................................................................. 26 0 9 0.22 2 0 2 0 0 0
..GGGGTCGGCGATTCTATGTCGAGT................................................................................................................................................................................................................................. 24 1 9 0.22 2 0 2 0 0 0
.TGGGGTCGGCGATTCTTTGT...................................................................................................................................................................................................................................... 20 0 9 0.22 2 0 2 0 0 0
...........GATTCTTTGTCGAGTTCACCGTCGT....................................................................................................................................................................................................................... 25 0 5 0.20 1 0 1 0 0 0
........................................................AGCTCGGTCCCGGTCTGCGCTATT........................................................................................................................................................................... 24 2 6 0.17 1 0 1 0 0 0
..........................................................CTCGGTTCCGGTCGGCGCTATT........................................................................................................................................................................... 22 1 6 0.17 1 0 1 0 0 0
........................................................CGTTCGGTTCCGGTCTGCGCTATT........................................................................................................................................................................... 24 1 6 0.17 1 0 1 0 0 0
........GGCGATTCTTTGTCCAGTTCACC............................................................................................................................................................................................................................ 23 1 6 0.17 1 0 1 0 0 0
.......................................................TTGCTCGGTTCCGGTCTGCGCTATT........................................................................................................................................................................... 25 2 6 0.17 1 0 1 0 0 0
.........................................................CCTCGGTCCCGGTCTGCGCTATT........................................................................................................................................................................... 23 2 6 0.17 1 1 0 0 0 0
.............................................................GGTTCCGGTCTGCGCTATTAGTAA...................................................................................................................................................................... 24 0 6 0.17 1 1 0 0 0 0
.......CGGCGATTCTTTGTCGAGTTCACCG........................................................................................................................................................................................................................... 25 0 6 0.17 1 0 1 0 0 0
.......CGGCTATTCTTTGTCGAGTTCACCGT.......................................................................................................................................................................................................................... 26 1 6 0.17 1 0 1 0 0 0
........TGCGATTCTTTGTCGAGTTCACCGT.......................................................................................................................................................................................................................... 25 1 6 0.17 1 0 1 0 0 0
........................................................CGCTCGGTTCCGGGCTGCGCTATT........................................................................................................................................................................... 24 1 6 0.17 1 1 0 0 0 0
..........................................................CTCGGTCCCGGTCTGCGCTATT........................................................................................................................................................................... 22 1 6 0.17 1 1 0 0 0 0
.........................................................GCTCGGTTCCGGTCTGTGCTATT........................................................................................................................................................................... 23 1 6 0.17 1 0 1 0 0 0
........GGCGATTCTTTGTCGAGTTCACCG........................................................................................................................................................................................................................... 24 0 6 0.17 1 0 1 0 0 0
..........................................................CTCGATTCCGGTCTGCGCTATT........................................................................................................................................................................... 22 1 6 0.17 1 1 0 0 0 0
................................................................TCCGGTCTGCGCTATTAGTAATT.................................................................................................................................................................... 23 1 6 0.17 1 1 0 0 0 0
..........................................................CTCGGTTCCGGTCAGCGCTATT........................................................................................................................................................................... 22 1 6 0.17 1 0 1 0 0 0
............................................................CGGTTCCGGTCTGCGCTATTAGT........................................................................................................................................................................ 23 0 6 0.17 1 0 1 0 0 0
.....GTCGGCGATTCTTTGTCGAGTTCACCG........................................................................................................................................................................................................................... 27 0 6 0.17 1 1 0 0 0 0
...........................................................TCGGTTCCGGTCTGCGCTATTAGT........................................................................................................................................................................ 24 0 6 0.17 1 0 1 0 0 0
.........GCGATTCTTTGTCGAGTTCACCG........................................................................................................................................................................................................................... 23 0 6 0.17 1 0 1 0 0 0
.........................................................GCTCGCTTCCGGTCTGCGCTATT........................................................................................................................................................................... 23 1 6 0.17 1 1 0 0 0 0
.........................................................GCTCAGTTCCGGTCTGCGCTATT........................................................................................................................................................................... 23 1 6 0.17 1 1 0 0 0 0
........GGCGATTCTTTGTCGAATTCACCGT.......................................................................................................................................................................................................................... 25 1 6 0.17 1 0 1 0 0 0
........................................................TGCTCGGTTCCGGTCGGCGCTATT........................................................................................................................................................................... 24 2 6 0.17 1 0 1 0 0 0
........................................................CACTCGGTTCCGGTCTGCGCTATT........................................................................................................................................................................... 24 1 6 0.17 1 0 1 0 0 0
...........................................................ACGGTTCCGGTCTGCGCTATT........................................................................................................................................................................... 21 1 6 0.17 1 1 0 0 0 0
.....GTCGGCGATTCTTTGTCAAGTTCACC............................................................................................................................................................................................................................ 26 1 6 0.17 1 0 1 0 0 0
.........................................................GCTCGGTTCCGGTCTGCGCTATTAG......................................................................................................................................................................... 25 0 6 0.17 1 0 1 0 0 0
........GGCGATTCTTTGTCGATTTCACCGT.......................................................................................................................................................................................................................... 25 1 6 0.17 1 0 1 0 0 0
........................................................CGCTCGGTTCCGGTCTGCGCTATTAGT........................................................................................................................................................................ 27 0 6 0.17 1 1 0 0 0 0
......TCGGCGATTCTTTGTCGAGTTCACC............................................................................................................................................................................................................................ 25 0 6 0.17 1 0 1 0 0 0
..............................................................GTTCCGGTCTGCGCTATTAGT........................................................................................................................................................................ 21 0 6 0.17 1 0 1 0 0 0
........................................................CGCTCGGTTCCGGTCTGCTCTATT........................................................................................................................................................................... 24 1 6 0.17 1 0 1 0 0 0
........................................................CGCTCGGTTCAGGTCTGCGCTATT........................................................................................................................................................................... 24 1 6 0.17 1 1 0 0 0 0
..........................................................ATCGGTTCCGGTCGGCGCTATT........................................................................................................................................................................... 22 2 6 0.17 1 0 1 0 0 0
.........................................................GGTCGGTTCCGGTCTGCGCTATT........................................................................................................................................................................... 23 1 6 0.17 1 1 0 0 0 0
........GGTGATTCTTTGTCGAGTTCACCGT.......................................................................................................................................................................................................................... 25 1 6 0.17 1 0 1 0 0 0
...........................................................AAGGTTCCGGTCTGCGCTAT............................................................................................................................................................................ 20 2 7 0.14 1 1 0 0 0 0
.........................................................GCCCGGTTCCGGTCAGCGATATT........................................................................................................................................................................... 23 3 7 0.14 1 0 0 0 1 0
............................................................AAGTTCCGGTCTGCGCTATT........................................................................................................................................................................... 20 2 7 0.14 1 0 1 0 0 0
............................................................CGGTTCCGGTCTGCGCTAT............................................................................................................................................................................ 19 0 7 0.14 1 0 1 0 0 0
.........................................................CCTCGGTTCCGGTCTGCGCTAT............................................................................................................................................................................ 22 1 7 0.14 1 1 0 0 0 0
........................................................TCCTCGGTTCCGGTCTGCGCTTT............................................................................................................................................................................ 23 3 7 0.14 1 1 0 0 0 0
..........................................................TTCGGTTCCGGTCTGCGCTAT............................................................................................................................................................................ 21 1 7 0.14 1 0 1 0 0 0
..........................................................CTCGCTTCCGGTCTGCGCTA............................................................................................................................................................................. 20 1 7 0.14 1 1 0 0 0 0
...AGGTCGGCGATTCTTTGTCGAGTTCAC............................................................................................................................................................................................................................. 27 1 8 0.13 1 0 1 0 0 0
..........................................................................................................AAATCGCTGTAGGAGGCATACCAGT........................................................................................................................ 25 1 8 0.13 1 0 1 0 0 0
.TGGGGTCGGCGGTTCTTTGT...................................................................................................................................................................................................................................... 20 1 9 0.11 1 0 1 0 0 0
...........................................................TTGGTTCCGGTCTGCGCTATT........................................................................................................................................................................... 21 1 9 0.11 1 0 1 0 0 0
.....GTCGGCGATTCTTTGTCGAGT................................................................................................................................................................................................................................. 21 0 9 0.11 1 0 1 0 0 0
..............................................................................................................CGCTGTAGGAGGCATACCAG......................................................................................................................... 20 0 9 0.11 1 0 1 0 0 0
ACAGGGTCGGCGATTCTTTGT...................................................................................................................................................................................................................................... 21 3 9 0.11 1 0 1 0 0 0
...GGGTCGGCGATTCTTTGTCGAGT................................................................................................................................................................................................................................. 23 0 9 0.11 1 0 1 0 0 0
GCGGGGTCGGCGATTCTTTGT...................................................................................................................................................................................................................................... 21 1 9 0.11 1 0 1 0 0 0
.AGGGGTCGGCGATTCTGTGTCGAGT................................................................................................................................................................................................................................. 25 2 9 0.11 1 0 1 0 0 0
...............................................................................................................GCTGTAGGAGGCATACCA.......................................................................................................................... 18 0 9 0.11 1 0 1 0 0 0
TTGGGGTCGGCGATTCTTTGT...................................................................................................................................................................................................................................... 21 1 9 0.11 1 0 1 0 0 0
GTGGGGTCGGCGATTCTTTGT...................................................................................................................................................................................................................................... 21 0 9 0.11 1 0 1 0 0 0
.TGGGGTCGGCGATTCTTTGTCGAGT................................................................................................................................................................................................................................. 25 0 9 0.11 1 0 1 0 0 0
.....................................................................................................................................................................TCGCGAGGCGTAAAAAAGGAAAACAAA........................................................... 27 1 20 0.05 1 0 1 0 0 0
..........................................................................................................................................................GCAAAAACAAAACGCGAGGCG............................................................................ 21 0 20 0.05 1 0 1 0 0 0
......................................................................................................................................................................................TGAAAACAAAACTTATTTGTCGGC............................................. 24 1 20 0.05 1 1 0 0 0 0
........................................................................................................................................................................CGAGGCGTAAAAAAGGAAAACAAAACT........................................................ 27 0 20 0.05 1 0 1 0 0 0
..................................................................................................................................CAAGAGAAAGCATCACTAGT..................................................................................................... 20 0 20 0.05 1 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_160:70158-70408 + dpe_865 CACCC--CAGCCGCTAAGAAACAGCTCAAGTGGCAGCAGGTGG------------------A---GGAGCCCCGTGAGTGCGAGCCAAGGCCAGACGCGATAATCATTGAACCCCAGGGCGAGCTTAGCTTTAGCGACATCCTCCGTATGGT------------CGTTCTCTTTCGTAGTG-ATCAGACCCGTTTTTG-TTTTG--CGCTCCGCATTTTTT--C----------CTTT-TGTTTTG---------AATAAAC-AGCCGGTATTTTCC----------------------TAAATAA--------ACTTTAAT------------------CAAC----T---TCCTAACCAGCCTAAC
dp5 Unknown_group_681:624-886 - CACCC--CAGACTCTAAGAAACAGCTCAAGTTGCAGCAGGTGGGCCCCAGGGTAAGGGAAAAAAGGGAGCCCCGTGAGCGCGAGCCAAGGCCAGACGCGATAATCATTGAACCCCAGGGCGAGCTTAGCTTTAGCGACATCCTCCGTATGGT------------CGTTCTCTTTCGTAGTG-ATCAGACCCGTTTTTG-TTTTG--CGCTCCGCATTTTTT--C----------CTTT-TGTTTTG---------AATAAAC-AGCCGGTGTTTTCC---------------------------------------TTTAAT------------------CAAC----T---TCCTAACCAGCCTAAC
droWil2 scf2_1100000004936:845497-845668 + CAGGATT------------------------------------------------------------------------------------------------------------------AAGTCAGCTATTATGGCAGCGTTTGAATGTGTCTTTTTTTCACTTTCACTCGTTGCAGAG-GACGGACGCGTTTTTT-TTTTG--CGCTTATCAACTTTT-AT----------T-TT-TT-CTCG-------CGATTAAAT-A-----------------C---------------------TTTTACATAACTCTTAAATTATCGG-T----------TTAA----T---TAATAATAATTACAAC
droVir3 scaffold_596:491-596 + T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAAGCG-AACAGACGAGTTTTTT-TTTTGTGCTCTCTTGTTA--T--------------------GATTTT---------AATTAAACA-CCGGCCTTTTAA----------------------TATTT-A--------TATTTAAA------------ATATT---------T---CCATTATTCTGTTTGC
droAna3 scaffold_12380:19901-20037 + TAA-----------------------------------------------------------------------------------------------------------------------------CTTTCATGATATCTTTCACTTCTT------------CTCTTTATCTCAAAGCG-GACGAACGTGTTTTTTTTTGTG--CGCACTGCGTT--GTC-ATAAAATTTGCTTAT-AGATTTG---------CATAAAC-AATCGGTGTTTATT----------------------T-------------------------------------------------------CTATTCACTTAAA
droBip1 scf7180000396584:102-214 + AAGAAAC---------------TGCCGAAGAAGGAGCGGGCAA------------------CTAGCTCAATGCCCAAGGAGAAGCCAAGGCCGGACGCACTGGTCATCACGGCTAAGGGCGAATATAGTTACGCCGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCCTGCG
droKik1 scf7180000302759:9447-9596 - GCGAGAA-------------------------------------------------------C----------------------------------------------------------AGCTTTATCTCTGGGACACTTTTTAGACCGG------------ATTCTTCCTTCAAAGTG-AACGGACGTGTTTTTT-TCTTG--CGCTCCCGATT--TGT-GT---------AGAA-TTTGTCT---------AAAAA-CCT-CCGGGGTTTACT----------------------AACAT-----------------T------------------T--AATAT------TTTGTGTTTCAAAT
droFic1 scf7180000448764:609-753 - CAGGGAT------------------------------------------------------------------------------------------------------------------AAACTAGCTTT------ACTTTTCGAATTCT---T--------GATTCTCTTTTCAAGCGAAACGGTCGTGTTTT---TTGTG--CGCTCCAAATT--TTTCA------------TT-TTTTTGA---------TACAA-CCAGCGGTGGTTCTGC-------------------------------------TCTCAAAT------------------TGGAATAT-------TTATTTGCTTAAT
droEle1 scf7180000491301:6311-6433 - CGTTT------------------------------------------------------------------------------------------------------------------------------------------------CTT------------CTTTGACTTCCAAAGCG-AACGGTCCTT----TT-TTGTG--CGCTCCGAATT--TTTAT----------T-TTTTT-TGTGCAATATCAAAATTTAT-A------------------CTTACC-GGTCACTAAATATAT----------------------GAACTTTAATATT-------------------------TCCG
droRho1 scf7180000775176:7812-7964 + GGAGAGT---------------------------------------------------------------------------------------------------------------------TTA-CCCGAACGACATTATCAATTT------------------GCGTATTCACTGTG-AACGGCCGTGTTTTTG-TTTTG--CGCTCCGAATT--TTCAT------------TT-TTCTTAT---------TGAAA-CCA-CCGGGGTTTACT----------------------TAAAT-C--------TGTTGAAC--------------GTTTC----TGCATCTTTAAGTGCCTTCTAAC
droTak1 scf7180000410490:9666-9816 - GATCC------------------------------------------------------------------------------------------------------------------------TAACATTAATGACATCAACTAATTGAC------------TGTTGACTTCCAAAGTG-AACGGTTGTGTTTT----TTCG--CGCTCCGAATT--TGTAT------------TT-GTTTTCG---------TGTTTACCT----------TTAGACGG---------------------TTTTAATTAAAACTTAAATATTCGA--------------------T---CCCTAATTTGATTTAT
droEug1 scf7180000409850:53642-53743 - T----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTTCCGAAGCG-AACGGACGTGTTTTTT-TTCTA--CTCTCGTTAACTTTG-TT----------G-GC-TA-TTTA-------CGAATATAC-G------------------CTTAAACC---------G---ATAC-------------------G------------------AAT-------TTCTTTGAATAAA
dm3 chrX:22351692-22351832 + TTTGG---------------------------------------------------------------------------------------------------------------------------------TGAAATC---CCTATGAA------------TTTTAGCTTTCAAAGAG-AACGGTCCTGTTTTTT-TTTTG--CGCTGCGATTT--TTATT------------TT-GTGTTTG---------TCAAA-CCAGCCGATGTTTTTAA-TAA---------------------TCT--------TCTTTAAT------------------TATCATAT------ATTGTAAACATATT
droSim2 node_62121:972-1085 - C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCAAAGCG-AACGGTCGTGTTTTTT--TTTG--CTCCCCGGTTT--TTACT------------TT-GTGTTTG---------TCAAA-CCAGCCTCGGATTTTAAAAAA---------------------TTT--------TCTTTAAT------------------TATCATAT-------ATTTAAACATAAT
droSec2 scaffold_9721:113-247 + AGCCA------------------------------------------------------------------------------------------------------------------------------------TATTATTCGTC----------------TAATAGCTTTCAAAGCG-AACGGTCGTGTTTTT---TTTG--CTCCCCGGTTT--TTATT------------TT-GTGTTTG---------TCAAA-CCAGCCGTGGTTTTTAAATAA---------------------TTT--------TCTATAAT------------------AATTATTT-------ATCTAAACATAAT
droYak3 3L:24138355-24138478 + TCGT---------------------------------------------------------------------------------------------------------------------------------------------------C------------TTCTA-GCTTCAAAGCA-AACGGTCCTGTTTTTT-TTCTG--CGCTCCGAATT--TAGTT------------TT-GT-TCTGC--------CAAAT-CCAGCGGTGGATTTGAA-TAA---------------------A-T--------TCTTGAAT--------------AATTC----AATT------TCGTTATCAGTAC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
CACCC--CAGCCGCTAAGAAACAGCTCAAGTGGCAGCAGGTGG------------------A---GGAGCCCCGTGAGTGCGAGCCAAGGCCAGACGCGATAATCATTGAACCCCAGGGCGAGCTTAGCTTTAGCGACATCCTCCGTATGGT------------CGTTCTCTTTCGTAGTG-ATCAGACCCGTTTTTG-TTTTG--CGCTCCGCATTTTTT--C----------CTTT-TGTTTTG---------AATAAAC-AGCCGGTATTTTCC----------------------TAAATAA--------ACTTTAAT------------------CAAC----T---TCCTAACCAGCCTAACSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..............TAAGAAACAGCTCAAGTGGCAGCAGG........................................................................................................................................................................................................................................................................................................................................2651.608071000
.............................................................................................................................................................................................................................................................................................................................TTAAT------------------CAAC----T---TCCTAACCAGCC....2230.331010000
...............AAGAAACAGCTCAAGTGGCAGCAGG........................................................................................................................................................................................................................................................................................................................................2550.201010000
...................AACAGCTCAAGTGGCAGCAGGTGG------------------...................................................................................................................................................................................................................................................................................................................2460.171010000
...................AACAGCTCAAGTGGCAGCAGGTG......................................................................................................................................................................................................................................................................................................................................2360.171010000
.....................................................................................CAAGGCCAGACGCGATAA.........................................................................................................................................................................................................................................................................1860.171010000
...............................................................................................................................................................................................................................C----------CTTT-TGTTTTG---------AATAAAC-AGCC.....................................................................................................23200.102020000
......................................................................................................................................................................TTCTCTTTCGTAGTG-ATC.......................................................................................................................................................................................18200.051100000
dp5
CACCC--CAGACTCTAAGAAACAGCTCAAGTTGCAGCAGGTGGGCCCCAGGGTAAGGGAAAAAAGGGAGCCCCGTGAGCGCGAGCCAAGGCCAGACGCGATAATCATTGAACCCCAGGGCGAGCTTAGCTTTAGCGACATCCTCCGTATGGT------------CGTTCTCTTTCGTAGTG-ATCAGACCCGTTTTTG-TTTTG--CGCTCCGCATTTTTT--C----------CTTT-TGTTTTG---------AATAAAC-AGCCGGTGTTTTCC---------------------------------------TTTAAT------------------CAAC----T---TCCTAACCAGCCTAACSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................................................GACGCGATAATCATTGAACCCCAGG..........................................................................................................................................................................................................................................................2512.0020200000000
................................................................................................................................................CGTATGGT------------CGTTCTCTTTCGTAGTG-..........................................................................................................................................................................................2512.0020000000200
.............................................................................................GACGCGATAATCATTGAACCCCAGGGC........................................................................................................................................................................................................................................................2712.0020200000000
............................................................................................AGACGCGATAATCATTGAACCCCA............................................................................................................................................................................................................................................................2411.0010100000000
..................................................GGTAAGGGAAAAAAGGGAG...........................................................................................................................................................................................................................................................................................................1911.0010100000000
...................................................................AGCCCCGTGAGCGCGAGCCAAGG......................................................................................................................................................................................................................................................................................2331.0030300000000
.....................................................................................................................................................................................................................................................G---------AATAAAC-AGCCGGTGTTTTCC---------------------------------------TT..................................................2411.0010100000000
....................................................TAAGGGAAAAAAGGGAGCCCCGTGA...................................................................................................................................................................................................................................................................................................2511.0010000001000
.............................................................................................GACGCGATAATCATTGAACCCCAGGG.........................................................................................................................................................................................................................................................2611.0010100000000
...................................................................................................................................................................................TG-ATCAGACCCGTTTTTG-TTTTG--CGCT..............................................................................................................................................................2711.0010100000000
................................................................................................GCGATAATCATTGAACCCCAGGGC........................................................................................................................................................................................................................................................2411.0010100000000
................................................................................................GCGATAATCATTGAACCCCAGGG.........................................................................................................................................................................................................................................................2311.0010100000000
.............................................................................................GACGCGATAATCATTGAACCCCAG...........................................................................................................................................................................................................................................................2411.0010100000000
...................................................................................GCCAAGGCCAGACGCGATAATCA......................................................................................................................................................................................................................................................................2320.5010100000000
....................................................................................................................................................................................G-ATCAGACCCGTTTTTG-TTTTG--CGCT..............................................................................................................................................................2620.5010100000000
.....................................................................................CAAGGCCAGACGCGATAAA........................................................................................................................................................................................................................................................................1920.5010100000000
...................................................................AGCCCCGTGAGCGCGAGCCAAG.......................................................................................................................................................................................................................................................................................2230.3310100000000
..........................................................................TGAGCGCGAGCCAAGGCCAGACC...............................................................................................................................................................................................................................................................................2330.3310010000000
..........................................................................TGAGCGCGAGCCAAGGCCAGACGCGA............................................................................................................................................................................................................................................................................2630.3310100000000
..........................................................................TGAGCGCGAGCCAAGGCCAGAC................................................................................................................................................................................................................................................................................2230.3310100000000
.........................................................................GTGAGCGCGAGCCAAGGCCA...................................................................................................................................................................................................................................................................................2030.3310000001000
....................................................................GCCCCGTGAGCGCGAGCCAAGGC.....................................................................................................................................................................................................................................................................................2330.3310100000000
...................................................................AGCCCCGTGAGCGCGAGCCAAGGCCAGA.................................................................................................................................................................................................................................................................................2830.3310100000000
............................................................................................................................................................................................................................................TT-TGTTTTG---------AATAAAC-AGCCGGTGTTT..............................................................................................27200.3060600000000
...................................................................AGCCCCGTGAGCGCGAGCCAA........................................................................................................................................................................................................................................................................................2140.2510100000000
..........................................................................................................................................................................................................................TTT--C----------CTTT-TGTTTTG---------AATAAAC-AGCCGG...................................................................................................28200.2550500000000
............................................................................................................................................................................................................................................TT-TGTTTTG---------AATAAAC-AGCCGGTGT................................................................................................25200.2550400000010
...............................................................AGGGAGCCCCGTGAGCGCGAGC...........................................................................................................................................................................................................................................................................................2240.2510100000000
...........................................................................................................................................................................................................................TT--C----------CTTT-TGTTTTG---------AATAAAC-AGC......................................................................................................24200.2040400000000
..........................................................................................................................................................................................................................TTT--C----------CTTT-TGTTTTG---------AATAAAC-AGC......................................................................................................25200.1530210000000
...........................................................................................................................................................................................................................TT--C----------CTTT-TGTTTTG---------AATAAAC-AGCCGG...................................................................................................27200.1530300000000
....................................................................................................................................................................................................................................................TG---------AATAAAC-AGCCGGTGTTTTCC---------------------------------------....................................................23200.1020200000000
.....................................................................................................................................................................................................................................................G---------AATAAAC-AGCCGGTGTTTTCC---------------------------------------....................................................22200.1020200000000
......................................................................................................................................................GT------------CGTTCTCTTTCGTAGTG-ATCAGA....................................................................................................................................................................................25140.0710100000000
...............................................................................................................................................................................................................................................TGTTTTG---------AATAAAC-AGCCGGTGT................................................................................................23200.0510000100000
..................................................................................................................................................................................................................................................TTTG---------AATAAAC-AGCCGGTGTTTA.............................................................................................23200.0510100000000
.............................................................................................................................................................................................................................................T-TGTTTTG---------AATAAAC-AGCCGGTGTTT..............................................................................................26200.0510100000000
............................................................................................................................................................................................................................................TT-TGTTTTG---------AATAAAC-AGCCGG...................................................................................................22200.0510000000010
............................................................................................................................................................................................................................T--C----------CTTT-TGTTTTG---------AATAAAC-AGCCGGT..................................................................................................27200.0510000000010
...............................................................................................................................................................................................................................................TGTTTTG---------AATAAAC-AGCCGGTG.................................................................................................22200.0510100000000
....................................................................................................................................................................................................................................................TG---------AATAAAC-AGCCGGTGTTTTCC---------------------------------------T...................................................24200.0510100000000
droWil2
CAGGATT------------------------------------------------------------------------------------------------------------------AAGTCAGCTATTATGGCAGCGTTTGAATGTGTCTTTTTTTCACTTTCACTCGTTGCAGAG-GACGGACGCGTTTTTT-TTTTG--CGCTTATCAACTTTT-AT----------T-TT-TT-CTCG-------CGATTAAAT-A-----------------C---------------------TTTTACATAACTCTTAAATTATCGG-T----------TTAA----T---TAATAATAATTACAACSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................................................................................................................................................................................................................................................TCG-------CGATTAAAT-A-----------------C---------------------TTTTACATAACTCT...................................................28201.5030023070
.................................................................................................................................................................................................................TTATCAACTTTT-AT----------T-TT-TT-CTCG-------CGAT...............................................................................................................27200.5511010100
...............................................................................................................................................................................................................................................................................................................TTTTACATAACTCTTAAATTATCGG-T----------T...........................27200.45900090
..................................................................................................................................................................................................................................................................................................................TACATAACTCTTAAATTATCGG-T----------T...........................24200.40801070
.................................................................................................................................................................................................................TTATCAACTTTT-AT----------T-TT-TT-CTCG-------CG.................................................................................................................25200.35706010
.............................................................................................................................................................................TTGCAGAG-GACGGACGCGTTTTTT-T........................................................................................................................................................................2570.14100010
..........................................................................................................................................................................TCGTTGCAGAG-GACGGACGCGTTTT............................................................................................................................................................................2570.14100010
................................................................................................................................................................TCACTTTCACTCGTTGCAGAG-GACG......................................................................................................................................................................................25150.13202000
.................................................................................................................................................................CACTTTCACTCGTTGCAGAG-GACGG.....................................................................................................................................................................................25190.11202000
......................................................................................................................................................................TCACTCGTTGCAGAG-GACGGACG..................................................................................................................................................................................23200.10220000
....................................................................................................................................................................................................................TCAACTTTT-AT----------T-TT-TT-CTCG-------CGAT...............................................................................................................24200.10202000
................................................................................................................................................................................................................................................................................................................TTTACATAACTCTTAAATTATCGG-T----------T...........................26200.10202000
.........................................................................................................................................................................................................................................................................................C---------------------TTTTACATAACTCTTAAATTATCGG-T----------T...........................28200.10200020
..................................................................................................................................................................................................TTTT-TTTTG--CGCTTATCAACTTT....................................................................................................................................................23200.05100010
...............................................................................................................................................................................................................................................TT-CTCG-------CGATTAAAT-A-----------------C---------------------TTTTACATAAC......................................................28200.05101000
.....................................................................................................................................................................TTCACTCGTTGCAGAG-GACGGA....................................................................................................................................................................................22200.05101000
..................................................................................................................................................................ACTTTCACTCGTTGCAGAG-GACGGACG..................................................................................................................................................................................27200.05101000
......................................................................................................................................................................................................................AACTTTT-AT----------T-TT-TT-CTCG-------CGATT..............................................................................................................23200.05101000
.....................................................................................................................................................................................................T-TTTTG--CGCTTATCAACTTTT-AT----------T-TT-.................................................................................................................................26200.05101000
..................................................................................................................................................................................................................................................................................................................................TATCGG-T----------TTAA----T---TAATAAT.........19200.05110000
........................................................................................................................................................................................................................CTTTT-AT----------T-TT-TT-CTCG-------CGAT...............................................................................................................20200.05101000
.......................................................................................................................................................................CACTCGTTGCAGAG-GACGGACG..................................................................................................................................................................................22200.05101000
................................................................................................................................................................................................................................................T-CTCG-------CGATTAAAT-A-----------------C---------------------TTTTACATAACTC....................................................29200.05101000
.........................................................................................................................................................................................................................................................................................C---------------------TTTTACATAACTCTTAAATTATCG.........................................25200.05101000
.....................................................................................................................................................................................................................................................................T-A-----------------C---------------------TTTTACATAACTCTTAAATTAT...........................................25200.05101000
.................................................................................................................................................................................................................TTATCAACTTTT-AT----------T-TT-TT-CTCG-------CGA................................................................................................................26200.05100010
.............................................................................................................................................................................................................................................................................................................................TAAATTATCGG-T----------TTAA----T---T...............18200.05100010
.....................................................................................................................................................................................................................CAACTTTT-AT----------T-TT-TT-CTCG-------CGATT..............................................................................................................24200.05101000
.....................................................................................................................................................................................................................................................................T-A-----------------C---------------------TTTTACATAACTCTTAAATTATCGG-.......................................28200.05101000
.........................................................................................................................................................................................................TTG--CGCTTATCAACTTTT-AT----------T-TT-TT-C.............................................................................................................................26200.05101000
................................................................................................................................................................................................................................................................TTAAAT-A-----------------C---------------------TTTTACATAACTCTTAAAT..............................................27200.05101000
..................................................................................................................................................................................................................................................CTCG-------CGATTAAAT-A-----------------C---------------------TTTTAC...........................................................21200.05101000
.........................................................................................................................................................................................................................................................................................C---------------------TTTTACATAACTCTTAAATTATCGG-.......................................26200.05101000
................................................................................................................................................................................................................................................................TTAAAT-A-----------------C---------------------TTTTACATAACTC....................................................21200.05101000
...............................................................................................................................................................................................................................................TT-CTCG-------CGATTAAAT-A-----------------C---------------------TTTTACATA........................................................26200.05101000
...................................................................................................................................................................................................................................................................................................................ACATAACTCTTAAATTATCGG-T----------TTAA----T---................27200.05101000
.....................................................................................................................................................................................................T-TTTTG--CGCTTATCAACTTTT-..................................................................................................................................................21200.05101000
droVir3
T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAAGCG-AACAGACGAGTTTTTT-TTTTGTGCTCTCTTGTTA--T--------------------GATTTT---------AATTAAACA-CCGGCCTTTTAA----------------------TATTT-A--------TATTTAAA------------ATATT---------T---CCATTATTCTGTTTGCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................................................................................................................................................................................................TTTTGTGCTCTCTTGTTA--T--------------------GATTTT---------AAT..............................................................................................................2850.201000000000000000000000000000010000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................TTAA----------------------TATTT-A--------TATTTAAA------------AT................................2080.131000000000000001000000000000000000000000000000000000000000000000
droAna3
TAA-----------------------------------------------------------------------------------------------------------------------------CTTTCATGATATCTTTCACTTCTT------------CTCTTTATCTCAAAGCG-GACGAACGTGTTTTTTTTTGTG--CGCACTGCGTT--GTC-ATAAAATTTGCTTAT-AGATTTG---------CATAAAC-AATCGGTGTTTATT----------------------T-------------------------------------------------------CTATTCACTTAAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................................................................................................................................CGTGTTTTTTTTTGTG--CGCACTGCGTT--.....................................................................................................................................................27200.051100000
...................................................................................................................................................................................................TTTTTTGTG--CGCACTGCGTT--GTC-ATA..............................................................................................................................................26200.051100000
droBip1
AAGAAAC---------------TGCCGAAGAAGGAGCGGGCAA------------------CTAGCTCAATGCCCAAGGAGAAGCCAAGGCCGGACGCACTGGTCATCACGGCTAAGGGCGAATATAGTTACGCCGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCCTGCGSizeHit CountTotal NormTotal
No Reads
droKik1
GCGAGAA-------------------------------------------------------C----------------------------------------------------------AGCTTTATCTCTGGGACACTTTTTAGACCGG------------ATTCTTCCTTCAAAGTG-AACGGACGTGTTTTTT-TCTTG--CGCTCCCGATT--TGT-GT---------AGAA-TTTGTCT---------AAAAA-CCT-CCGGGGTTTACT----------------------AACAT-----------------T------------------T--AATAT------TTTGTGTTTCAAATSizeHit CountTotal NormTotal
No Reads
droFic1
CAGGGAT------------------------------------------------------------------------------------------------------------------AAACTAGCTTT------ACTTTTCGAATTCT---T--------GATTCTCTTTTCAAGCGAAACGGTCGTGTTTT---TTGTG--CGCTCCAAATT--TTTCA------------TT-TTTTTGA---------TACAA-CCAGCGGTGGTTCTGC-------------------------------------TCTCAAAT------------------TGGAATAT-------TTATTTGCTTAATSizeHit CountTotal NormTotal
No Reads
droEle1
CGTTT------------------------------------------------------------------------------------------------------------------------------------------------CTT------------CTTTGACTTCCAAAGCG-AACGGTCCTT----TT-TTGTG--CGCTCCGAATT--TTTAT----------T-TTTTT-TGTGCAATATCAAAATTTAT-A------------------CTTACC-GGTCACTAAATATAT----------------------GAACTTTAATATT-------------------------TCCGSizeHit CountTotal NormTotal
No Reads
droRho1
GGAGAGT---------------------------------------------------------------------------------------------------------------------TTA-CCCGAACGACATTATCAATTT------------------GCGTATTCACTGTG-AACGGCCGTGTTTTTG-TTTTG--CGCTCCGAATT--TTCAT------------TT-TTCTTAT---------TGAAA-CCA-CCGGGGTTTACT----------------------TAAAT-C--------TGTTGAAC--------------GTTTC----TGCATCTTTAAGTGCCTTCTAACSizeHit CountTotal NormTotal
No Reads
droTak1
GATCC------------------------------------------------------------------------------------------------------------------------TAACATTAATGACATCAACTAATTGAC------------TGTTGACTTCCAAAGTG-AACGGTTGTGTTTT----TTCG--CGCTCCGAATT--TGTAT------------TT-GTTTTCG---------TGTTTACCT----------TTAGACGG---------------------TTTTAATTAAAACTTAAATATTCGA--------------------T---CCCTAATTTGATTTATSizeHit CountTotal NormTotal
No Reads
droEug1
T----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTTCCGAAGCG-AACGGACGTGTTTTTT-TTCTA--CTCTCGTTAACTTTG-TT----------G-GC-TA-TTTA-------CGAATATAC-G------------------CTTAAACC---------G---ATAC-------------------G------------------AAT-------TTCTTTGAATAAASizeHit CountTotal NormTotal
No Reads
dm3
TTTGG---------------------------------------------------------------------------------------------------------------------------------TGAAATC---CCTATGAA------------TTTTAGCTTTCAAAGAG-AACGGTCCTGTTTTTT-TTTTG--CGCTGCGATTT--TTATT------------TT-GTGTTTG---------TCAAA-CCAGCCGATGTTTTTAA-TAA---------------------TCT--------TCTTTAAT------------------TATCATAT------ATTGTAAACATATTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................................................................................................................................................................TTTTAGCTTTCAAAGAG-AACGGTCCTG................................................................................................................................................................................27112.00120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000050000000010000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000
.........................................................................................................................................................................GCTTTCAAAGAG-AACGGTCCTGTTT.............................................................................................................................................................................25112.001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000010000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................TTTAGCTTTCAAAGAG-AACGG.....................................................................................................................................................................................21111.00110000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000100000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000100000000
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droSim2
C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCAAAGCG-AACGGTCGTGTTTTTT--TTTG--CTCCCCGGTTT--TTACT------------TT-GTGTTTG---------TCAAA-CCAGCCTCGGATTTTAAAAAA---------------------TTT--------TCTTTAAT------------------TATCATAT-------ATTTAAACATAATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
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....................................................................................................................................................................................G-AACGGTCGTGTTTTTT--TTTG--CTCCCC............................................................................................................................................................27101.5015000001500000000000
...............................................................................................................................................................................................................................................GTGTTTG---------TCAAA-CCAGCCTCGGATT..............................................................................................2511.00100000001000000000
...............................................................................................................................................................................................................................................GTGTTTG---------TCAAA-CCAGCCTC...................................................................................................2011.00100000000001000000
...................................................................................................................................................................................................................................................................................TAAAAAA---------------------TTT--------TCTTTAAT------------------TATCATAT-------A............27150.931400000041450000000
....................................................................................................................................................................................G-AACGGTCGTGTTTTTT--TTTG--CTCC..............................................................................................................................................................25100.80800100000205000000
....................................................................................................................................................................................G-AACGGTCGTGTTTTTT--TTTG--CTCCC.............................................................................................................................................................26100.80800200001005000000
...................................................................................................................................................................................................................................................................................TAAAAAA---------------------TTT--------TCTTTAAT------------------TATCATA.....................25170.761300000062140000000
....................................................................................................................................................................................G-AACGGTCGTGTTTTTT--TTTG--CTC...............................................................................................................................................................24100.30300200010000000000
..........................................................................................................................................................................................................TG--CTCCCCGGTTT--TTACT------------TT-GTGTT............................................................................................................................25200.20400000010210000000
.................................................................................................................................................................................................................................................................................TTTAAAAAA---------------------TTT--------TCTTTAAT------------------TATCATA.....................27170.18300000000300000000
...........................................................................................................................................................................TTTCAAAGCG-AACGGTCGTGTTT.............................................................................................................................................................................23200.15300000000300000000
..................................................................................................................................................................................GCG-AACGGTCGTGTTTTTT--TTTG--CTCCC.............................................................................................................................................................28100.10100000000010000000
....................................................................................................................................................................................G-AACGGTCGTGTTTTTT--TTTG--CT................................................................................................................................................................23100.10100000000001000000
....................................................................................................................................................................................G-AACGGTCGTGTTTTTT--TTTG--CTCCCCG...........................................................................................................................................................28100.10100000000001000000
........................................................................................................................................................................................CGGTCGTGTTTTTT--TTTG--CTCCCCGG..........................................................................................................................................................26100.10100000000000001000
...............................................................................................................................................................................AAAGCG-AACGGTCGTGTTTTTT--TTTG--CT................................................................................................................................................................28100.10100000000100000000
.................................................................................................................................................................................AGCG-AACGGTCGTGTTTTTT--TTTG--CT................................................................................................................................................................26100.10100000000001000000
...........................................................................................................................................................................TTTCAAAGCG-AACGGTCGTGTT..............................................................................................................................................................................22200.10200000000200000000
......................................................................................................................................................................................AACGGTCGTGTTTTTT--TTTG--CTCCG.............................................................................................................................................................25110.09100000000001000000
....................................................................................................................................................................................G-AACGGTCGTGTTTTTT--TTTG--..................................................................................................................................................................21120.08100000000000010000
................................................................................................................................................................................................TTTTTT--TTTG--CTCCCCGGTTT--TTACT------------....................................................................................................................................26120.08100000000010000000
...............................................................................................................................................................................AAAGCG-AACGGTCGTGTTTTTT--TTTG--AAA...............................................................................................................................................................29140.07100000000100000000
....................................................................................................................................................................................................................................................................................AAAAAA---------------------TTT--------TCTTTAAT------------------TATCATAT-------A............26160.06100000000010000000
..................................................................................................................................................................................................................................................................................TTAAAAAA---------------------TTT--------TCTTTAAT------------------TATCATA.....................26170.06100000000010000000
.....................................................................................................................................................................................................................................................................................AAAAA---------------------TTT--------TCTTTAAT------------------TATCATAT-------A............25170.06100000010000000000
...................................................................................................................................................................................................................................................................................TAAAAAA---------------------TTT--------TCTTTAAT------------------TATCATAA-------.............26170.06100000000010000000
................................................................................................................................................................................................................CCCCGGTTT--TTACT------------TT-GTGTTTG---------TCAAA-...........................................................................................................28200.05100000010000000000
..................................................................................................................................................................................................TTTT--TTTG--CTCCCCGGTTT--TTACT------------TT-.................................................................................................................................26200.05100000001000000000
............................................................................................................................................................................................................................TACT------------TT-GTGTTTG---------TCAAA-CCAGCC.....................................................................................................24200.05100000000000010000
.................................................................................................................................................................................................................CCCGGTTT--TTACT------------TT-GTGTTTG---------TCA..............................................................................................................25200.05100000000100000000
...............................................................................................................................................................................................................TCCCCGGTTT--TTACT------------TT-GTGTTTG---------TCA..............................................................................................................27200.05100000000010000000
..................................................................................................................................................................................................................CCGGTTT--TTACT------------TT-GTGTTTG---------TCAAA-C..........................................................................................................27200.05100000000010000000
................................................................................................................................................................................................................CCCCGGTTT--TTACT------------TT-GTGTTTG---------TCAA.............................................................................................................27200.05100000000100000000
.....................................................................................................................................................................................................T--TTTG--CTCCCCGGTTT--TTACT------------....................................................................................................................................21200.05100000000001000000
................................................................................................................................................................................................................CCCCGGTTT--TTACT------------TT-GTGTTTG---------TCA..............................................................................................................26200.05100000010000000000
................................................................................................................................................................................................................................................TGTTTG---------TCAAA-CCAG.......................................................................................................15200.05100000010000000000
...........................................................................................................................................................................TTTCAAAGCG-AACGGTCGTGTTTTTT--........................................................................................................................................................................26200.05100000010000000000
droSec2
AGCCA------------------------------------------------------------------------------------------------------------------------------------TATTATTCGTC----------------TAATAGCTTTCAAAGCG-AACGGTCGTGTTTTT---TTTG--CTCCCCGGTTT--TTATT------------TT-GTGTTTG---------TCAAA-CCAGCCGTGGTTTTTAAATAA---------------------TTT--------TCTATAAT------------------AATTATTT-------ATCTAAACATAATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................................................................................................................................................................................................GTGTTTG---------TCAAA-CCAGCCGTGGT................................................................................................23200.901818000
...............................................................................................................................................................................................................................................GTGTTTG---------TCAAA-CCAGCCG....................................................................................................19200.0510010
.................................................................................................................................................................................................................................................GTTTG---------TCAAA-CCAGCCGTGGT................................................................................................21200.0511000
........................................................................................................................................................................AGCTTTCAAAGCG-AACGGTCGTGTTT.............................................................................................................................................................................26200.0511000
..........................................................................................................................................................................................................TG--CTCCCCGGTTT--TTATT------------TT-GTGT.............................................................................................................................24200.0510010
...............................................................................................................................................................................................................................................GTGTTTG---------TCAAA-CCAGCCGTGGTTTTT............................................................................................27200.0510010
...............................................................................................................................................................................................................................................GTGTTTG---------TCAAA-CCAGCCGTGG.................................................................................................22200.0510001
droYak3
TCGT---------------------------------------------------------------------------------------------------------------------------------------------------C------------TTCTA-GCTTCAAAGCA-AACGGTCCTGTTTTTT-TTCTG--CGCTCCGAATT--TAGTT------------TT-GT-TCTGC--------CAAAT-CCAGCGGTGGATTTGAA-TAA---------------------A-T--------TCTTGAAT--------------AATTC----AATT------TCGTTATCAGTACSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads

Generated: 06/08/2015 at 03:22 PM