dpe_861

Name	Class	Family	Strand
Hopers2	DNA	hAT-hobo	-

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## GAGCACTAGGCGCTGATAGGGACGGACAGTCAAACATGGCTCAATCGACTCGGCTATTGATGCTGATCAAGAATTTATAGTGTAATCATTACGAAGTCATTTTTATTTTCAGTAGACGCTTTATAGTAGGGTCGCGCGGGGAACTGGTACTTCAGCCCGCTGCCTATTTGGTTCCTATTTTCCTATTCCTATTTCATTCAGCACCAGCTCTATGCCGGCATCCACTTTACCTTCACACACCTCACGGACGT ************************************************((.(((((((...(((....((.(((.(((((....))))).))).))....)))...))))))).))......(((((((..(((((((...((((....))))))))).)).........)))))))......................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V111 male body	V057 head	M042 female body
............................................................TGCTGATCAAGAATTTATAGTGTA.......................................................................................................................................................................	24	0	1	1.00	1	1	0	0
..GCACTAGGCGCTGATAGGGAC....................................................................................................................................................................................................................................	21	0	20	0.10	2	2	0	0
.....CTAGGCGCTGATAGGGACGGA.................................................................................................................................................................................................................................	21	0	20	0.10	2	2	0	0
.....................................................CTATTGATGCTGATCAAGAATT................................................................................................................................................................................	22	0	16	0.06	1	0	0	1
............................................................................................................................................................................................................CAGCACTATGTCGGCATCA............................	19	3	20	0.05	1	0	1	0
...............................................................................................................................................GTGGTACTTCAGCCGGCGG.........................................................................................	19	3	20	0.05	1	0	1	0

CTCGTGATCCGCGACTATCCCTGCCTGTCAGTTTGTACCGAGTTAGCTGAGCCGATAACTACGACTAGTTCTTAAATATCACATTAGTAATGCTTCAGTAAAAATAAAAGTCATCTGCGAAATATCATCCCAGCGCGCCCCTTGACCATGAAGTCGGGCGACGGATAAACCAAGGATAAAAGGATAAGGATAAAGTAAGTCGTGGTCGAGATACGGCCGTAGGTGAAATGGAAGTGTGTGGAGTGCCTGCA ************************************************((.(((((((...(((....((.(((.(((((....))))).))).))....)))...))))))).))......(((((((..(((((((...((((....))))))))).)).........)))))))......................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V111 male body	V057 head	V042 embryo	M021 embryo	M042 female body
.....................................................................................................................................CGGGCCCCTTGATCATGAATT.................................................................................................	21	3	1	1.00	1	0	1	0	0	0
.........................................................................................................................................................................................................................CGTAGGTGAAATGGAGGTG...............	19	1	1	1.00	1	1	0	0	0	0
.........................................................................................................................................................................................................................CGTAGGTGAAATGGAAGTGTG.............	21	0	1	1.00	1	1	0	0	0	0
...........................................................................................................................................................................................................GGTCGAGATACGGCCGTAGGT...........................	21	0	2	0.50	1	1	0	0	0	0
....................................................................TGCTACAATATCACATTAGT...................................................................................................................................................................	20	3	6	0.17	1	0	0	1	0	0
..........................................................................................................................................................................................CGGATCAAGTAAGTCGTAG..............................................	19	3	11	0.09	1	1	0	0	0	0
........................................................................TAAATGTCACATCAGTAA.................................................................................................................................................................	18	2	20	0.05	1	0	1	0	0	0
.TCGTGATCCGCGACTATCCC......................................................................................................................................................................................................................................	20	0	20	0.05	1	0	0	0	0	1
.........................................................................................................................................................................CCAAGGATAAAAGGAAAC................................................................	18	2	20	0.05	1	0	0	0	1	0

Species	Coordinate	ID	Alignment
droPer2	scaffold_16:1738675-1738925 -	dpe_861	GAGCACTAGGCGCTGATA--------GGGACG----GA------CAGTCA------------------AACATGGCTCAATCGACTCGGCTATTGATGCTGATCAAGAATTTATAG---TGTAATCATTACGAAGT------------------CATTTTTATTTTCAGTAGA------CGCTT--------------------------------------------TATAGTAGGGTCGCGCGGGGAACTGGTACTTCAGCCCGCTGCCTATTTGG-----------------TTCCTATTTTCCTATTCCTATTTCATTCAGCACCAGCTCTATGCCGGCATCCACTTTACCTTCACACACCTCACGGACGT
dp5	4_group4:5220622-5220902 +		GAGATCCAGGAACTTATATTTTGCAATAGGCA----AAGCCGACCATGAAATCTGTGTGTTGGAGAGAGACAGAGCGAGAGAGAATGAA--ATTTTTTTTTATCAAGAATTTATAG---TGTAATCATTATGAAGT------------------CATTTTTATTTTCAGTAGA------CGCTT--------------------------------------------TATAGTACGGTCGCGCGGGGAACTGGTACTTCAGCCCGCTGCCTATTTGG-----------------TTCCTATTTTCCTATTCCTATTTCATTCAGCACCAGCTCTATGCCGGCATCCACTTCACCTTCACACACCTCACGGACGT
droWil2	scf2_1100000004965:324503-324701 +		AAGAACTAGATGTTCATA--------CAGACG--------------GAAG------------------GACATGGCTATATCGATTCGGCTGTTGATGCTGATCAAGAATATATATACT--------TTATGTAATGTAAATCAAATATGAAATCAGCCTCTTTTTGGGCCTACCCTTGCTTTATGGGGTCGGAGAAGCTCTCTTCTGCCTGTTACATACA-T--------------------------------------------------T---T-----------------TGGCGATTT-CATATAC-CATTTC-------A------------------------------------------------
droVir3	scaffold_12928:4394807-4394952 -		GA------------------------CGGACA----AT------CAGACG------------------AACTGGGCTAGATCAACTCGGCTGTTGATGCTGATCAAGAATATAAGTA------------------------------------------------------TA----TACTTTATGGGGTCGGAGATGCTTCCTTCTGCCTGTTACACACA-T--------------------------------------------------T-TAT-----------------ATCCTTTTTACCCATTTTTAATTAGTTCAG--------------------------------------------------
droMoj3	scaffold_6308:1439988-1440124 -		GAGATCGACGCGTTCTTA--------CACACGGACGGA------CGGACA------------------GACATGGCTAAATCGACTCAGCTCGTCGCTCTGATCAGGAATATATATA--------------------------------------------------------------CACTAGTCG------------------------------------------------GC------ATAA-------------------------T-TATAACTATCTAACGGCTTTATTCAG--------------AACACTTTAT--------------------------------------------------
droGri2	scaffold_14624:2411445-2411564 +		GCTGT-----------AA--------TAGACA----CA------CAGACG------------------AACATGGCTAAATCAACTAGGCTTTTGATGCTGGTCAAGAATATATATG--------------------------------------------------------------------------GAATAAGCTTTCT-ATGTCTTTTACCTATT-T--------------------------------------------------T---T-----------------ATTCAACTT--------------CCTTATAGT------------------------------------------------
droAna3	scaffold_13280:913755-913857 +		GAGACCTACGCGTTCATA--------CAGACA--------------GACG------------------GAATTTGGAATATCTCCTCTGCTATTGATGCTGATCATGAATTTATATATC--------TTATGGAGTCAAAA-----------------TTTGTTTTCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1	scf7180000396710:523004-523121 -		GAGATCCAAGCCTTCATA--------CGGACG----GA------CAGACG------------------GACATGGCT-TATCGACTTGGCTGTTGATGCTGATCACGAATATATGTA------ATAAGGCTGA------GA-----------------CT-TTTTTCAGCAGA---------------GT--------------------------------------CATAGTCGGG-----------------------------------------------------------------------------------------------------------------------------------------
droKik1	scf7180000298139:24598-24727 +		AGGGACTAG-TTTGCGTA--------GAAACG----GA------CAGACG------------------GACATGGCTAGATCGACTCGGCTGTTGACGCTAACCAAGAATATATAA---TTTAAA--ATAAGTAAT--------------------GTTCCAATTTGTGTAAATTGTTGTATTGCAGAGCCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1	scf7180000453932:622052-622125 +		GAGAATTTGACGTTCATA--------CGGACG----GA------CAGACA------------------GACATACATAGATCGACTCGTCCAATGAGTCTGATCAGAAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1	scf7180000490334:16360-16496 +		GAGAACTCGACGTTCATA--------CAGACG------------------------------------GACAAGTCTAGATCGACTCGACT-TTGATCCTGATCAAGAATATATATA--------------------------------------------------------------CTTTATATGGCCGGAAACGCATTCTTCTACCTTTAATATACT-TCT---TACACTAC--------GAGTAACTGGTA-----------------------------------------------------------------------------------------------------------------------
droRho1	scf7180000778209:7189-7289 -		GAGATCTCAGCGTTCATA--------CGGACAGACAGA------CAGACG------------------GACATGGCTAGATCGACTCGGCTAGTGATCCTGAACAAGAATATATGTA------------------------------------------------------TA----TACTTTATAGGGTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1	scf7180000302377:1200656-1200818 -		GAGACCTCAGCGTTCATA--------TGGACA----GA------CGGACA------------------GAT-CGAGTAGATCGACTAGGCTAGTGATCCTGGTCAAGAATATATA----------------------------------------------------------------CTTTATGGGGTCGGAAACGCTTCC--------------------------ACGGAATCGACCGGCAAGGGTATACAACTTCGGCCTGCTGA--ATT--T-----------------AGCCTTCTTTCTCATT----------------------------------------------------------------
droTak1	scf7180000412669:13048-13174 -		GAGATCTAAGCGTTCATA--------CAGACG----GA------CAGACG------------------GACATGGCTAGATCGACTCGGCTAGTGCCCCTGATCAAGAATATACTC---TGCAGG--AAACGGAAT------------------CAGTTTT------GG--------------------------------------ACTATTAATATAC----------TAGTTGGG-----------------------------------------------------------------------------------TC----------------------------------------------------
droEug1	scf7180000409676:36839-36992 -		GAGATCTCAGCGTTCATA--------CGGACAGACGGA------CAGACG------------------GACATGGCTCATTCGTCTTCGCTATTCATCCTGATCAAGAATATATATACA--------GTACGGTAT--TAAT------------AAA-----------------------TTTTAGCAGCACAAAACACGTTTT---------------------------GATA---TTGCATCAGCAATTGGTACTCC------------------------------------------------------------------A------------------------------------------------
dm3	chr2RHet:1006604-1006795 +		GAGATCTCAACGTTCACA--------CGGGCAGATGGA------CAGACG------------------AACATGGCTGGATCGACTCGGCTATTAATTCTGATTAAGGAAATGTATA--------------------------------------------------------------CTTTATATGGACGGGAACGCTTCCTTCC--CTATAGAACACCCTCTTACTATACGAGTGACTGGTATAA------------------CTACAAAATTGG-----------------TTACAATATTACTATTGATAATCCATCC----------------------------------------------------
droSim2	3l:22899960-22900096 +		GAGATCTCGACGTTCATA--------CGG----------------------------------------ACACGGCTAGACCGACTCGGCAATTGATCCTGATTAAGAATATATATA--------------------------------------------------------------CTTTTTATGGTCGGAAACGCGTCCTTCTGCATGTTGCATACT-T--------------------------------------------------T---T-----------------CCTCTATTCTACTATTCCCTTTT---------------------------------------------------------
droSec2	scaffold_55:41712-41873 -		GAGATCCCGACGTTCATA--------CGGACGGAGTGA------CAGACC------------------GATGTGGCCAGGTCGACTCGTCTAGTGATCTCGATCAAGAATATATTTA--------------------------------------------------------------CTTTTTATGGTGGGAAACGCTTCCTTCTACCTGTTACATACT-T--------------------------------------------------T---T-----------------CAACGAATCTAGTATTCCCATTTCGCTCTACA------------------------------------------------
droYak3	v2_chr2L_random_028:1055108-1055271 +		TAGATCTTTACGTTTATA--------CGGACA----GA------CAGATGGATGGACAGA------CAGACTTGGCGAGATCGACTCGGCTATTGATCCTGATCAAGAATATATATA---TACA---TTATAT----------------------ATGTATATATACATTA------TACATTATATGGTCGAAGACACATCCTTCTGCCTGTTACATACT-T--------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2	scaffold_4770:1120263-1120430 +		GAGATCTCGACGTTCATA--------CGGGCGGACGGA------CAGACGGACGGACAGT------CGGATATGGCCAGATCGACAAGGCTATGGATTGTGATCAAGAATATATAA---TATATT--ATATACA-------------------------TTATATATATTATA----TGCTTTATGTAGTCGGAAACGTTTCCTTCTGCCAGTTACATACT-T--------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droPer2

GAGCACTAGGCGCTGATA--------GGGACG----GA------CAGTCA------------------AACATGGCTCAATCGACTCGGCTATTGATGCTGATCAAGAATTTATAG---TGTAATCATTACGAAGT------------------CATTTTTATTTTCAGTAGA------CGCTT--------------------------------------------TATAGTAGGGTCGCGCGGGGAACTGGTACTTCAGCCCGCTGCCTATTTGG-----------------TTCCTATTTTCCTATTCCTATTTCATTCAGCACCAGCTCTATGCCGGCATCCACTTTACCTTCACACACCTCACGGACGT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
................................................................................................TGCTGATCAAGAATTTATAG---TGTA............................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
..GCACTAGGCGCTGATA--------GGGAC........................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	2
.....CTAGGCGCTGATA--------GGGACG----GA------...........................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	2
.........................................................................................CTATTGATGCTGATCAAGAATT........................................................................................................................................................................................................................................................................	22	16	0.06	1	0	1	0	0	0	0

dp5

GAGATCCAGGAACTTATATTTTGCAATAGGCA----AAGCCGACCATGAAATCTGTGTGTTGGAGAGAGACAGAGCGAGAGAGAATGAA--ATTTTTTTTTATCAAGAATTTATAG---TGTAATCATTATGAAGT------------------CATTTTTATTTTCAGTAGA------CGCTT--------------------------------------------TATAGTACGGTCGCGCGGGGAACTGGTACTTCAGCCCGCTGCCTATTTGG-----------------TTCCTATTTTCCTATTCCTATTTCATTCAGCACCAGCTCTATGCCGGCATCCACTTCACCTTCACACACCTCACGGACGT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.......................................................TGTGTTGGAGAGAGACAGAG............................................................................................................................................................................................................................................................................................................	20	6	3.17	19	0	16	0	0	3	0	0	0	0	0
....................................................CTGTGTGTTGGAGAGAGAC................................................................................................................................................................................................................................................................................................................	19	4	1.75	7	0	7	0	0	0	0	0	0	0	0
.......................................................TGTGTTGGAGAGAGACAGAGC...........................................................................................................................................................................................................................................................................................................	21	5	1.60	8	0	7	0	0	1	0	0	0	0	0
...........................................................TTGGAGAGAGACAGAGCGAGA.......................................................................................................................................................................................................................................................................................................	21	6	1.33	8	0	8	0	0	0	0	0	0	0	0
.......................................................TGTGTTGGAGAGAGACAGAGCGA.........................................................................................................................................................................................................................................................................................................	23	5	1.20	6	0	6	0	0	0	0	0	0	0	0
.........................................................TGTTGGAGAGAGACAGAGCG..........................................................................................................................................................................................................................................................................................................	20	6	1.00	6	0	3	0	0	0	0	2	0	1	0
.........................................................TGTTGGAGAGAGACAGAGCGA.........................................................................................................................................................................................................................................................................................................	21	6	1.00	6	0	4	0	0	0	0	2	0	0	0
.....................................................TGTGTGTTGGAGAGAGACAGA.............................................................................................................................................................................................................................................................................................................	21	6	1.00	6	0	5	0	0	0	0	1	0	0	0
......................................................GTGTGTTGGAGAGAGACAGAG............................................................................................................................................................................................................................................................................................................	21	6	0.83	5	0	4	0	0	0	0	1	0	0	0
.....................................................TGTGTGTTGGAGAGAGAC................................................................................................................................................................................................................................................................................................................	18	6	0.83	5	0	5	0	0	0	0	0	0	0	0
.....................................................TGTGTGTTGGAGAGAGACA...............................................................................................................................................................................................................................................................................................................	19	6	0.83	5	0	4	0	0	0	0	1	0	0	0
.....................................................................ACAGAGCGAGAGAGAATGAA--............................................................................................................................................................................................................................................................................................	20	20	0.75	15	0	11	0	0	0	0	4	0	0	0
....................................................CTGTGTGTTGGAGAGAGACAG..............................................................................................................................................................................................................................................................................................................	21	4	0.75	3	0	3	0	0	0	0	0	0	0	0
.....................................................TGTGTGTTGGAGAGAGACAG..............................................................................................................................................................................................................................................................................................................	20	6	0.67	4	0	3	0	0	0	0	1	0	0	0
.........................................................TGTTGGAGAGAGACAGAGC...........................................................................................................................................................................................................................................................................................................	19	6	0.67	4	0	4	0	0	0	0	0	0	0	0
........................................................GTGTTGGAGAGAGACAGAG............................................................................................................................................................................................................................................................................................................	19	6	0.67	4	0	4	0	0	0	0	0	0	0	0
.................................................................AGAGACAGAGCGAGAGAGAA..................................................................................................................................................................................................................................................................................................	20	20	0.65	13	0	13	0	0	0	0	0	0	0	0
............................................................TGGAGAGAGACAGAGCGAGAG......................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.....................................................................ACAGAGCGAGAGAGAATGA...............................................................................................................................................................................................................................................................................................	19	20	0.50	10	0	7	0	0	0	0	3	0	0	0
.......................................................TGTGTTGGAGAGAGACAG..............................................................................................................................................................................................................................................................................................................	18	6	0.50	3	0	3	0	0	0	0	0	0	0	0
.....................................................................ACAGAGCGAGAGAGAATGAA--A...........................................................................................................................................................................................................................................................................................	21	20	0.45	9	0	0	0	0	0	0	9	0	0	0
.......................................................TGTGTTGGAGAGAGACAGAGCGAGA.......................................................................................................................................................................................................................................................................................................	25	5	0.40	2	0	2	0	0	0	0	0	0	0	0
........................................................GTGTTGGAGAGAGACAGAGC...........................................................................................................................................................................................................................................................................................................	20	5	0.40	2	0	2	0	0	0	0	0	0	0	0
.................................................................AGAGACAGAGCGAGAGAGA...................................................................................................................................................................................................................................................................................................	19	20	0.40	8	0	8	0	0	0	0	0	0	0	0
.......................................................TGTGTTGGAGAGAGACAGAGCGAG........................................................................................................................................................................................................................................................................................................	24	5	0.40	2	0	1	0	0	1	0	0	0	0	0
......................................................................CAGAGCGAGAGAGAATGAA--AT..........................................................................................................................................................................................................................................................................................	21	20	0.35	7	0	6	0	0	0	1	0	0	0	0
............................................................TGGAGAGAGACAGAGCGAGA.......................................................................................................................................................................................................................................................................................................	20	6	0.33	2	0	2	0	0	0	0	0	0	0	0
......................................................GTGTGTTGGAGAGAGACAG..............................................................................................................................................................................................................................................................................................................	19	6	0.33	2	0	2	0	0	0	0	0	0	0	0
.....................................................TGTGTGTTGGAGAGAGACAGAG............................................................................................................................................................................................................................................................................................................	22	6	0.33	2	0	2	0	0	0	0	0	0	0	0
..........................................................GTTGGAGAGAGACAGAGCGAG........................................................................................................................................................................................................................................................................................................	21	6	0.33	2	0	2	0	0	0	0	0	0	0	0
.......................................................TGTGTTGGAGAGAGACAGA.............................................................................................................................................................................................................................................................................................................	19	6	0.33	2	0	2	0	0	0	0	0	0	0	0
.................................................................AGAGACAGAGCGAGAGAGAATG................................................................................................................................................................................................................................................................................................	22	20	0.25	5	0	5	0	0	0	0	0	0	0	0
....................................................CTGTGTGTTGGAGAGAGACA...............................................................................................................................................................................................................................................................................................................	20	4	0.25	1	0	1	0	0	0	0	0	0	0	0
...............................................................AGAGAGACAGAGCGAGAGA.....................................................................................................................................................................................................................................................................................................	19	20	0.20	4	0	3	0	0	0	0	1	0	0	0
........................................................GTGTTGGAGAGAGACAGAGCG..........................................................................................................................................................................................................................................................................................................	21	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.......................................................TGTGTTGGAGAGAGACAGAGCG..........................................................................................................................................................................................................................................................................................................	22	5	0.20	1	0	1	0	0	0	0	0	0	0	0
......................................................GTGTGTTGGAGAGAGACAGAGC...........................................................................................................................................................................................................................................................................................................	22	5	0.20	1	0	1	0	0	0	0	0	0	0	0
......................................................GTGTGTTGGAGAGAGACAGA.............................................................................................................................................................................................................................................................................................................	20	6	0.17	1	0	1	0	0	0	0	0	0	0	0
.......................................................TGTGTTGGAGAGAGACAGAA............................................................................................................................................................................................................................................................................................................	20	12	0.17	2	0	2	0	0	0	0	0	0	0	0
.....................................................TGTGTGTTGGAGAGAGACAA..............................................................................................................................................................................................................................................................................................................	20	12	0.17	2	0	2	0	0	0	0	0	0	0	0
..................................................................GAGACAGAGCGAGAGAGAAT.................................................................................................................................................................................................................................................................................................	20	20	0.15	3	0	3	0	0	0	0	0	0	0	0
................................................................GAGAGACAGAGCGAGAGAGAATG................................................................................................................................................................................................................................................................................................	23	20	0.15	3	0	3	0	0	0	0	0	0	0	0
.................................................................AGAGACAGAGCGAGAGAG....................................................................................................................................................................................................................................................................................................	18	20	0.15	3	0	3	0	0	0	0	0	0	0	0
................................................................GAGAGACAGAGCGAGAGAGAAT.................................................................................................................................................................................................................................................................................................	22	20	0.15	3	0	3	0	0	0	0	0	0	0	0
.........................................................TGTTGGAGAGAGACAGAG............................................................................................................................................................................................................................................................................................................	18	7	0.14	1	0	1	0	0	0	0	0	0	0	0
.......................................................TGTGTTGGAGAGAGACAGAGCGAGAC......................................................................................................................................................................................................................................................................................................	26	7	0.14	1	0	1	0	0	0	0	0	0	0	0
.............................................................GGAGAGAGACAGAGCGAGA.......................................................................................................................................................................................................................................................................................................	19	7	0.14	1	0	1	0	0	0	0	0	0	0	0
.....................................................................ACAGAGCGAGAGAGAATGAA--ATT.........................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.........................................................TGTTGGAGAGAGACAGAGCGT.........................................................................................................................................................................................................................................................................................................	21	10	0.10	1	0	1	0	0	0	0	0	0	0	0
..................................................................GAGACAGAGCGAGAGAGAA..................................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	2	0	0	0	0	0	0	0	0
......................................................................CAGAGCGAGAGAGAATGAA--ATT.........................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.......................................................TGTGTTGGAGAGAGACAGAGT...........................................................................................................................................................................................................................................................................................................	21	10	0.10	1	0	1	0	0	0	0	0	0	0	0
.......................................................................AGAGCGAGAGAGAATGAA--ATT.........................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	2	0	0	0
..........................................................GTTGGAGAGAGACAGAGCGT.........................................................................................................................................................................................................................................................................................................	20	10	0.10	1	0	1	0	0	0	0	0	0	0	0
....................................................CTGTGTGTTGGAGAGAGTT................................................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...............................................................AGAGAGACAGAGCGAGAGAG....................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.................................................................AGAGACAGAGCGAGAGAGAAT.................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	2	0	0	0
......................................................................CAGAGCGAGAGAGAATGAA--A...........................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.......................................................TGTGTTGGAGAGAGACAA..............................................................................................................................................................................................................................................................................................................	18	12	0.08	1	0	1	0	0	0	0	0	0	0	0
.................................................................AGAGACAGAGCGAGAGAGAATGA...............................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................AGACAGAGCGAGAGAGAATGA...............................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................................................GACAGAGCGAGAGAGAATGAA--............................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0
......................................................................CAGAGCGAGAGAGAATGAA--............................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................TGTGTTGGAGAGAGACAGG.............................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...............................................................AGAGAGACAGAGCGAGAGAGA...................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	1	0
...............................................................AGAGAGACAGAGCGAGAG......................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................TGCAATAGGCA----AAGCCGACCATG.......................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.................ATTTTGCAATAGGCA----AAGCC..............................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droWil2

AAGAACTAGATGTTCATA--------CAGACG--------------GAAG------------------GACATGGCTATATCGATTCGGCTGTTGATGCTGATCAAGAATATATATACT--------TTATGTAATGTAAATCAAATATGAAATCAGCCTCTTTTTGGGCCTACCCTTGCTTTATGGGGTCGGAGAAGCTCTCTTCTGCCTGTTACATACA-T--------------------------------------------------T---T-----------------TGGCGATTT-CATATAC-CATTTC-------A------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.............................................................................................................................................................................................................CTGCCTGTTACATACA-T--------------------------------------------------T---T-----------------T...............................................................................	20	20	0.10	2	0	2	0	0	0
.........................................................................................................................................................................................................TCTTCTGCCTGTTACATACA-T--------------------------------------------------T---T-----------------TGGC............................................................................	27	20	0.05	1	0	1	0	0	0
.........................................................................................................................................................................................................TCTTCTGCCTGTTACATACA-T--------------------------------------------------T---T-----------------TGG.............................................................................	26	20	0.05	1	0	1	0	0	0
...........................................................................................GTTGATGCTGATCAAGAATATAT.....................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	1	0

droVir3

GA------------------------CGGACA----AT------CAGACG------------------AACTGGGCTAGATCAACTCGGCTGTTGATGCTGATCAAGAATATAAGTA------------------------------------------------------TA----TACTTTATGGGGTCGGAGATGCTTCCTTCTGCCTGTTACACACA-T--------------------------------------------------T-TAT-----------------ATCCTTTTTACCCATTTTTAATTAGTTCAG--------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
............................................................................................TTGATGCTGATCAAGAATATAAGTA------------------------------------------------------TA----......................................................................................................................................................................................................	27	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................A------------------------------------------------------TA----TACTTTATGGGGTCGGAGA...................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................CGGCTGTTGATGCTGATCAAGAATA........................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................TGGGGTCGGAGATGCTTC.............................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................TGGGGTCGGAGATGCTTCCTTCTGCC.....................................................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................A------------------------------------------------------TA----TACTTTATGGGGTCGGAGATG.................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................TTGATGCTGATCAAGAAT.........................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................GGGGTCGGAGATGCTTCCTTCTGCC.....................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GAGATCGACGCGTTCTTA--------CACACGGACGGA------CGGACA------------------GACATGGCTAAATCGACTCAGCTCGTCGCTCTGATCAGGAATATATATA--------------------------------------------------------------CACTAGTCG------------------------------------------------GC------ATAA-------------------------T-TATAACTATCTAACGGCTTTATTCAG--------------AACACTTTAT--------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

GCTGT-----------AA--------TAGACA----CA------CAGACG------------------AACATGGCTAAATCAACTAGGCTTTTGATGCTGGTCAAGAATATATATG--------------------------------------------------------------------------GAATAAGCTTTCT-ATGTCTTTTACCTATT-T--------------------------------------------------T---T-----------------ATTCAACTT--------------CCTTATAGT------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droAna3

GAGACCTACGCGTTCATA--------CAGACA--------------GACG------------------GAATTTGGAATATCTCCTCTGCTATTGATGCTGATCATGAATTTATATATC--------TTATGGAGTCAAAA-----------------TTTGTTTTCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

GAGATCCAAGCCTTCATA--------CGGACG----GA------CAGACG------------------GACATGGCT-TATCGACTTGGCTGTTGATGCTGATCACGAATATATGTA------ATAAGGCTGA------GA-----------------CT-TTTTTCAGCAGA---------------GT--------------------------------------CATAGTCGGG-----------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AGGGACTAG-TTTGCGTA--------GAAACG----GA------CAGACG------------------GACATGGCTAGATCGACTCGGCTGTTGACGCTAACCAAGAATATATAA---TTTAAA--ATAAGTAAT--------------------GTTCCAATTTGTGTAAATTGTTGTATTGCAGAGCCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GAGAATTTGACGTTCATA--------CGGACG----GA------CAGACA------------------GACATACATAGATCGACTCGTCCAATGAGTCTGATCAGAAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GAGAACTCGACGTTCATA--------CAGACG------------------------------------GACAAGTCTAGATCGACTCGACT-TTGATCCTGATCAAGAATATATATA--------------------------------------------------------------CTTTATATGGCCGGAAACGCATTCTTCTACCTTTAATATACT-TCT---TACACTAC--------GAGTAACTGGTA-----------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GAGATCTCAGCGTTCATA--------CGGACAGACAGA------CAGACG------------------GACATGGCTAGATCGACTCGGCTAGTGATCCTGAACAAGAATATATGTA------------------------------------------------------TA----TACTTTATAGGGTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GAGACCTCAGCGTTCATA--------TGGACA----GA------CGGACA------------------GAT-CGAGTAGATCGACTAGGCTAGTGATCCTGGTCAAGAATATATA----------------------------------------------------------------CTTTATGGGGTCGGAAACGCTTCC--------------------------ACGGAATCGACCGGCAAGGGTATACAACTTCGGCCTGCTGA--ATT--T-----------------AGCCTTCTTTCTCATT----------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GAGATCTAAGCGTTCATA--------CAGACG----GA------CAGACG------------------GACATGGCTAGATCGACTCGGCTAGTGCCCCTGATCAAGAATATACTC---TGCAGG--AAACGGAAT------------------CAGTTTT------GG--------------------------------------ACTATTAATATAC----------TAGTTGGG-----------------------------------------------------------------------------------TC----------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GAGATCTCAGCGTTCATA--------CGGACAGACGGA------CAGACG------------------GACATGGCTCATTCGTCTTCGCTATTCATCCTGATCAAGAATATATATACA--------GTACGGTAT--TAAT------------AAA-----------------------TTTTAGCAGCACAAAACACGTTTT---------------------------GATA---TTGCATCAGCAATTGGTACTCC------------------------------------------------------------------A------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

GAGATCTCAACGTTCACA--------CGGGCAGATGGA------CAGACG------------------AACATGGCTGGATCGACTCGGCTATTAATTCTGATTAAGGAAATGTATA--------------------------------------------------------------CTTTATATGGACGGGAACGCTTCCTTCC--CTATAGAACACCCTCTTACTATACGAGTGACTGGTATAA------------------CTACAAAATTGG-----------------TTACAATATTACTATTGATAATCCATCC----------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
............................................................................................................................................................................................................................................TGACTGGTATAA------------------CTACAAAATTGG-----------------T...............................................................................	25	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................TA--------------------------------------------------------------CTTTATATGGACGGGAACGCTTC.............................................................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0
....................................................................................CTCGGCTATTAATTCTGATTAAG............................................................................................................................................................................................................................................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.......................................................................................................................................................................................................TTCCTTCC--CTATAGAACACCC.........................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................TGGCTGGATCGACTCGGCTA...........................................................................................................................................................................................................................................................................................	20	3	0.67	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................ATGGCTGGATCGACTCGGCTA...........................................................................................................................................................................................................................................................................................	21	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................GATCGACTCGGCTATTAA.......................................................................................................................................................................................................................................................................................	18	13	0.31	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................TCGACTCGGCTATTAATTC....................................................................................................................................................................................................................................................................................	19	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................GA------CAGACG------------------AACATGGCT..........................................................................................................................................................................................................................................................................................................	17	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................ATCGACTCGGCTATTAA.......................................................................................................................................................................................................................................................................................	17	14	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

GAGATCTCGACGTTCATA--------CGG----------------------------------------ACACGGCTAGACCGACTCGGCAATTGATCCTGATTAAGAATATATATA--------------------------------------------------------------CTTTTTATGGTCGGAAACGCGTCCTTCTGCATGTTGCATACT-T--------------------------------------------------T---T-----------------CCTCTATTCTACTATTCCCTTTT---------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
............................................................................TAGACCGACTCGGCAATTGATCCTGAT................................................................................................................................................................................................................................................................................	27	1	93.00	93	0	0	11	0	0	0	33	18	14	11	6	0	0	0	0	0	0
............................................................................TAGACCGACTCGGCAATTGATCCTGA.................................................................................................................................................................................................................................................................................	26	1	32.00	32	0	0	1	1	0	0	10	9	4	3	4	0	0	0	0	0	0
..........................................................................................................GAATATATATA--------------------------------------------------------------CTTTTTATGGTCGGA.....................................................................................................................................................................................	26	6	22.83	137	0	0	0	0	0	0	2	65	1	10	2	0	57	0	0	0	0
............................................................................TAGACCGACTCGGCAATTGATCCTGATT...............................................................................................................................................................................................................................................................................	28	1	13.00	13	0	0	1	0	0	0	4	4	2	2	0	0	0	0	0	0	0
...................................................................................................................TA--------------------------------------------------------------CTTTTTATGGTCGGAAACGCGTCC............................................................................................................................................................................	26	1	9.00	9	0	0	0	0	0	0	3	5	0	1	0	0	0	0	0	0	0
............................................................................TAGACCGACTCGGCAATTGATCCTGATTA..............................................................................................................................................................................................................................................................................	29	1	8.00	8	0	0	0	0	0	0	2	3	2	1	0	0	0	0	0	0	0
................................................................................................................ATATA--------------------------------------------------------------CTTTTTATGGTCGGAAACGC................................................................................................................................................................................	25	4	7.50	30	0	0	0	0	0	0	17	2	11	0	0	0	0	0	0	0	0
................................................................................................................ATATA--------------------------------------------------------------CTTTTTATGGTCGGAAACGCG...............................................................................................................................................................................	26	1	7.00	7	0	0	0	0	0	0	6	0	0	0	1	0	0	0	0	0	0
...................................................................................................................TA--------------------------------------------------------------CTTTTTATGGTCGGAAACGCGTC.............................................................................................................................................................................	25	1	7.00	7	0	0	0	0	0	0	3	2	0	2	0	0	0	0	0	0	0
..............................................................................GACCGACTCGGCAATTGATCCTGAT................................................................................................................................................................................................................................................................................	25	1	6.00	6	0	0	2	0	0	0	0	1	1	1	1	0	0	0	0	0	0
................TA--------CGG----------------------------------------ACACGGCTAGACCGACTCGGC.............................................................................................................................................................................................................................................................................................	26	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	5	1	0	0	0
...........................................................................................ATTGATCCTGATTAAGAATATATA....................................................................................................................................................................................................................................................................	24	7	6.00	42	0	0	0	0	0	0	8	4	15	15	0	0	0	0	0	0	0
................TA--------CGG----------------------------------------ACACGGCTAGACCGACT.................................................................................................................................................................................................................................................................................................	22	1	5.00	5	0	0	0	0	0	0	1	1	0	0	0	0	3	0	0	0	0
.............................................................................................................................................................................................TCGGAAACGCGTCCTTCTGCATGTTGC...............................................................................................................................................................	27	1	5.00	5	0	0	0	0	0	0	3	2	0	0	0	0	0	0	0	0	0
..........................CGG----------------------------------------ACACGGCTAGACCGACTCGGCAA...........................................................................................................................................................................................................................................................................................	26	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0
............................................................................................................ATATATATA--------------------------------------------------------------CTTTTTATGGTCGGAAA...................................................................................................................................................................................	26	5	3.60	18	0	0	0	0	0	0	1	11	2	1	0	0	3	0	0	0	0
............................................................................................................ATATATATA--------------------------------------------------------------CTTTTTATGGTCGGA.....................................................................................................................................................................................	24	7	3.14	22	0	0	0	0	0	0	2	12	2	1	0	0	5	0	0	0	0
............TTCATA--------CGG----------------------------------------ACACGGCTAGACCGAC..................................................................................................................................................................................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	1	1	0	0	0	0	1	0	0	0	0
.............TCATA--------CGG----------------------------------------ACACGGCTAGACCGAC..................................................................................................................................................................................................................................................................................................	24	1	3.00	3	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0
................................................................................................................ATATA--------------------------------------------------------------CTTTTTATGGTCGGAAACGCGC..............................................................................................................................................................................	27	1	3.00	3	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0
..............................................................................GACCGACTCGGCAATTGATCCTGA.................................................................................................................................................................................................................................................................................	24	1	3.00	3	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0
................TA--------CGG----------------------------------------ACACGGCTAGACCGACTCGGCA............................................................................................................................................................................................................................................................................................	27	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0
..........................................................................................................GAATATATATA--------------------------------------------------------------CTTTTTATGGTCGGAA....................................................................................................................................................................................	27	6	2.83	17	0	0	0	0	0	0	0	6	0	0	0	0	11	0	0	0	0
............................................................................................................ATATATATA--------------------------------------------------------------CTTTTTATGGTCGGAA....................................................................................................................................................................................	25	7	2.43	17	0	0	0	0	0	0	1	3	0	1	1	0	10	1	0	0	0
............................G----------------------------------------ACACGGCTAGACCGACTCGGCAAT..........................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
.......................................................................ACGGCTAGACCGACTCGGCAATTGAAAA....................................................................................................................................................................................................................................................................................	28	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
................................................................................CCGACTCGGCAATTGATCCTGATGT..............................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
...........................................................................................ATTGATCCTGATTAAGAATATATATA--------------------------------------------------------------CT..................................................................................................................................................................................................	28	3	2.00	6	0	0	0	0	0	0	1	1	3	1	0	0	0	0	0	0	0
............TTCATA--------CGG----------------------------------------ACACGGCTAGACCGACTC................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
.....................................................................................TCGGCAATTGATCCTGATTAAGAATA........................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
...................................................................................................................TA--------------------------------------------------------------CTTTTTATGGTCGGAAACGCGTCCT...........................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
.......................................................................................................TAAGAATATATATA--------------------------------------------------------------CTTTTTATGGTCGGA.....................................................................................................................................................................................	29	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
................................................................................................................ATATA--------------------------------------------------------------CTTTTTATGGTCGGAAACGCGA..............................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
................TA--------CGG----------------------------------------ACACGGCTAGACCGACTCGGCAA...........................................................................................................................................................................................................................................................................................	28	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
.................A--------CGG----------------------------------------ACACGGCTAGACCGACTCGGT.............................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
..................................................................................................................................................................................................................TGTTGCATACT-T--------------------------------------------------T---T-----------------CCTCTATTCT......................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
................TA--------CGG----------------------------------------ACACGGCTAGACCGACTCGG..............................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0
.........................................................................................CAATTGATCCTGATTAAGAATATA......................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
........GACGTTCATA--------CGG----------------------------------------ACACGGCTAGAC......................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
..........................................................................................................GAATATATATA--------------------------------------------------------------CTTTTTATGGTCGGAAA...................................................................................................................................................................................	28	5	1.80	9	0	0	0	0	0	0	0	0	0	1	0	0	7	1	0	0	0
..........................................................................................................GAATATATATA--------------------------------------------------------------CTTTTTATGGTCGG......................................................................................................................................................................................	25	6	1.67	10	0	0	0	0	0	0	0	0	0	1	0	0	8	1	0	0	0
............................................................................................................ATATATATA--------------------------------------------------------------CTTTTTATGGTCGGAAAC..................................................................................................................................................................................	27	4	1.50	6	0	0	0	0	0	0	2	1	0	1	0	0	2	0	0	0	0
..................................................................................................................................................................................................AACGCGTCCTTCTGCATGTTGCATA............................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...ATCTCGACGTTCATA--------CGG----------------------------------------ACACG.............................................................................................................................................................................................................................................................................................................	23	2	1.00	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
......TCGACGTTCATA--------CGG----------------------------------------ACACGGCTA.........................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..........................................................................GCTAGACCGACTCGGCAATTGATCCTG..................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................TCCTTCTGCATGTTGCATACT-T--------------------------------------------------T---T-----------------CC..............................................................................	26	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................TTTTATGGTCGGAAACGCGTCCTT..........................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
............................................................................................................ATATATATA--------------------------------------------------------------CTTTTTATGGTCGGAAACGCG...............................................................................................................................................................................	30	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.................................................................................................................TATA--------------------------------------------------------------CTTTTTATGGTCGGAAACGCG...............................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................TCGGAAACGCGTCCTTCTGCATGTT.................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................TGCATGTTGCATACT-T--------------------------------------------------T---T-----------------CCTCTATT........................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.............................................................................AGACCGACTCGGCAATTGATCCTGATT...............................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
........................................................................CGGCTAGACCGACTCGGCAATTGAT......................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................T-----------------CCTCTATTCTACTATTCCCTTT..........................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
............................................................................TAGACCGACTCGGCAATTGATCCTG..................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.............TCATA--------CGG----------------------------------------ACACGGCTAGACCGACTC................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..............................................................................GACCGACTCGGCAATTGATCCTGATTA..............................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................TAGACCGACTCGGCAATTGATCC....................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.......................................................................ACGGCTAGACCGACTCGGCAATTGAT......................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
................TA--------CGG----------------------------------------ACACGGCTAGACCG....................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......TCGACGTTCATA--------CGG----------------------------------------ACACGGCTAGA.......................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
................TA--------CGG----------------------------------------ACACGGCTAGACCGACTA................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
................TA--------CGG----------------------------------------ACACGGCTAGACCGAC..................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................TAGACCGACTCGGCAATTGATCCTGT.................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
............................................................................TAGACCGACTCGGCAATTGATCCTGATGC..............................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
............................................................................TAGACCGACTCGGCAATTGATCCTGATTT..............................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................CCTTCTGCATGTTGCATACT-T--------------------------------------------------T---T-----------------CCTC............................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................TAAGAATATATATA--------------------------------------------------------------CTTTTTATGGTCGG......................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................................TGTTGCATACT-T--------------------------------------------------T---T-----------------CCTCTATTCTACTA..................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..GATCTCGACGTTCATA--------CGG----------------------------------------ACACGGCT..........................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................TA--------------------------------------------------------------CTTTTTATGGTCGGAAACGCGTCCTTC.........................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................................TATGGTCGGAAACGCGTCCTTC.........................................................................................................................................................................	22	2	1.00	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................TGCATGTTGCATACT-T--------------------------------------------------T---T-----------------CCTCTA..........................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...........................................................................CTAGACCGACTCGGCAAT..........................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........GTTCATA--------CGG----------------------------------------ACACGGCTAGACC.....................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
................TA--------CGG----------------------------------------ACACGGCTAGACC.....................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................................GCATACT-T--------------------------------------------------T---T-----------------CCTCTATTCTACT...................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
................................................................................CCGACTCGGCAATTGATCCTGATT...............................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................ACGGCTAGACCGACTCGGCAATTG........................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................CGCGTCCTTCTGCATGTTGCATACT-T--------------------------------------------------T---..................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................ACGGCTAGACCGACTCGGCAATTGATCC....................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................ATATA--------------------------------------------------------------CTTTTTATGGTCGGAAACGCGT..............................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
............................................................................TAGACCGACTCGGCAATTGATCCT...................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................TATATATA--------------------------------------------------------------CTTTTTATGGTCGGAAACGCGTC.............................................................................................................................................................................	31	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
................TA--------CGG----------------------------------------ACACGGCTAGACCGACTCGGCAAT..........................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................ATATA--------------------------------------------------------------CTTTTTATGGTCGGAAACGCGTC.............................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.......CGACGTTCATA--------CGG----------------------------------------ACACGGCTAGA.......................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................TA--------------------------------------------------------------CTTTTTATGGTCGGAAACGCG...............................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
............TTCATA--------CGG----------------------------------------ACACGGCTAGACCGACT.................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................ATATA--------------------------------------------------------------CTTTTTATGGTCGGAAAC..................................................................................................................................................................................	23	5	1.00	5	0	0	0	0	0	0	4	0	0	1	0	0	0	0	0	0	0
..............................................................................GACCGACTCGGCAATTGATCCTGATT...............................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................TGGTCGGAAACGCGTCCTTCTGCATG...................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................ATTGATCCTGATTAAGAATAT.......................................................................................................................................................................................................................................................................	21	10	0.90	9	0	0	0	0	0	0	5	1	2	1	0	0	0	0	0	0	0
.............................................................................................................TATATATA--------------------------------------------------------------CTTTTTATGGTCGGAAACGC................................................................................................................................................................................	28	4	0.75	3	0	0	0	0	0	0	1	1	0	0	0	0	1	0	0	0	0
...........................................................................................ATTGATCCTGATTAAGAATATAT.....................................................................................................................................................................................................................................................................	23	8	0.50	4	0	0	0	0	0	0	1	0	3	0	0	0	0	0	0	0	0
.............................................................................................................TATATATA--------------------------------------------------------------CTTTTTATGGTCGGAAAC..................................................................................................................................................................................	26	4	0.50	2	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0
...........GTTCATA--------CGG----------------------------------------ACACGGC...........................................................................................................................................................................................................................................................................................................	17	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................ATATATATA--------------------------------------------------------------CTTTTTATGGTCGGAAACGC................................................................................................................................................................................	29	4	0.50	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
..............................................................................................................ATATATA--------------------------------------------------------------CTTTTTATGGTCGGAAAC..................................................................................................................................................................................	25	4	0.50	2	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................TATGGTCGGAAACGCGTCCTTCTGC......................................................................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................ATATATATA--------------------------------------------------------------CTTTTTATGGTCGG......................................................................................................................................................................................	23	7	0.43	3	0	0	1	0	0	0	1	1	0	0	0	0	0	0	0	0	0
...................................................................................................................TA--------------------------------------------------------------CTTTTTATGGTCGGAAACGC................................................................................................................................................................................	22	7	0.43	3	0	0	0	0	0	0	1	0	1	0	0	0	1	0	0	0	0
................................................................................................................ATATA--------------------------------------------------------------CTTTTTATGGTCGGAAACG.................................................................................................................................................................................	24	5	0.40	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
............................................................................................................ATATATATA--------------------------------------------------------------CTTTTTATGGTCGGAT....................................................................................................................................................................................	25	8	0.38	3	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0
.............................................................................................TGATCCTGATTAAGAATATATATA--------------------------------------------------------------CT..................................................................................................................................................................................................	26	3	0.33	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................ATTGATCCTGATTAAGA...........................................................................................................................................................................................................................................................................	17	13	0.31	4	0	0	0	0	0	0	0	0	1	3	0	0	0	0	0	0	0
............................................................................................................ATATATATA--------------------------------------------------------------CTTTTTATGGTCGGAAT...................................................................................................................................................................................	26	10	0.30	3	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0
..........................................................................................................GAATATATATA--------------------------------------------------------------CTTTTTATGGTCGGAT....................................................................................................................................................................................	27	7	0.29	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
..........................................................................................................GAATATATATA--------------------------------------------------------------CTTTTTATGGTCGGT.....................................................................................................................................................................................	26	7	0.29	2	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0
......................................................................................CGGCAATTGATCCTGA.................................................................................................................................................................................................................................................................................	16	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................GACTCGGCAATTGATCCTGAT................................................................................................................................................................................................................................................................................	21	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................TATATATA--------------------------------------------------------------CTTTTTATGGTCGGAAACG.................................................................................................................................................................................	27	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
GAGATCTCGACGTTCATA--------CGG----------------------------------------AC................................................................................................................................................................................................................................................................................................................	23	20	0.25	5	0	0	3	0	0	0	0	2	0	0	0	0	0	0	0	0	0
...........................................................................................ATTGATCCTGATTAAGAATATA......................................................................................................................................................................................................................................................................	22	9	0.22	2	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0
................TA--------CGG----------------------------------------ACACGGCTAGACTTT...................................................................................................................................................................................................................................................................................................	20	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................ATATATA--------------------------------------------------------------CTTTTTATGGTCGGAAA...................................................................................................................................................................................	24	5	0.20	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................ATTGATCCTGATTAAGAATATATATA--------------------------------------------------------------CTA.................................................................................................................................................................................................	29	5	0.20	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...ATCTCGACGTTCATA--------CGG----------------------------------------AC................................................................................................................................................................................................................................................................................................................	20	20	0.20	4	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................ATATA--------------------------------------------------------------CTTTTTATGGTCGGAAA...................................................................................................................................................................................	22	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........................................................................................................AGAATATATATA--------------------------------------------------------------CTTTTTATGGTCGGA.....................................................................................................................................................................................	27	6	0.17	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..........................................................................................................GAATATATATA--------------------------------------------------------------CTTTTTATGGTCG.......................................................................................................................................................................................	24	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................TATATATA--------------------------------------------------------------CTTTTTATGGTCGGA.....................................................................................................................................................................................	23	7	0.14	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................A--------------------------------------------------------------CTTTTTATGGTCGGAAACGC................................................................................................................................................................................	21	7	0.14	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................TTTTTATGGTCGGAAACGC................................................................................................................................................................................	19	7	0.14	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................ATTGATCCTGATTAAGAATATATAT...................................................................................................................................................................................................................................................................	25	7	0.14	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................ATATATATA--------------------------------------------------------------CTTTTTATGGTCGT......................................................................................................................................................................................	23	9	0.11	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................ATATA--------------------------------------------------------------CTTTTTATGGTCGG......................................................................................................................................................................................	19	9	0.11	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...........................................................................................ATTGATCCTGATTAAGAATATATT....................................................................................................................................................................................................................................................................	24	10	0.10	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...........................................................................................ATTGATCCTGATTAAGAATA........................................................................................................................................................................................................................................................................	20	11	0.09	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................TTTTATGGTCGGAAACG.................................................................................................................................................................................	17	13	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................A--------------------------------------------------------------CTTTTTATGGTCGGAA....................................................................................................................................................................................	17	13	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................ATTGATCCTGATTAAGAATATATAG...................................................................................................................................................................................................................................................................	25	14	0.07	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................TTTTATGGTCGGAAAC..................................................................................................................................................................................	16	15	0.07	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
GAGATCTCGACGTTCATA--------CGG----------------------------------------ACA...............................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
......TCGACGTTCATA--------CGG----------------------------------------AC................................................................................................................................................................................................................................................................................................................	17	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.AGATCTCGACGTTCATA--------CGG----------------------------------------ACA...............................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0

droSec2

GAGATCCCGACGTTCATA--------CGGACGGAGTGA------CAGACC------------------GATGTGGCCAGGTCGACTCGTCTAGTGATCTCGATCAAGAATATATTTA--------------------------------------------------------------CTTTTTATGGTGGGAAACGCTTCCTTCTACCTGTTACATACT-T--------------------------------------------------T---T-----------------CAACGAATCTAGTATTCCCATTTCGCTCTACA------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..............................................................................................................................................................................................................................T--------------------------------------------------T---T-----------------CAACGAATCTAGTATTCCCATTT.........................................................	26	1	12.00	12	12	0	0	0
..............................................................................................................................................................................................................................T--------------------------------------------------T---T-----------------CAACGAATCTAGTATTCCCATT..........................................................	25	1	4.00	4	3	0	1	0
..............................................................................................................................................................................................................................T--------------------------------------------------T---T-----------------CAACGAATCTAGTATTCCCAT...........................................................	24	1	2.00	2	2	0	0	0
..............................................................................................................................................................................................................................T--------------------------------------------------T---T-----------------CAACGAATCTAGTATTCCCATTTC........................................................	27	1	2.00	2	2	0	0	0
..............................................................................................................................................................................................................................T--------------------------------------------------T---T-----------------CAACGAATCTAGTATTCCCATTTCG.......................................................	28	1	2.00	2	1	0	1	0
............................................................................................................................................................................................................................T-T--------------------------------------------------T---T-----------------CAACGAATCTAGTATTCCCA............................................................	24	1	1.00	1	0	0	1	0
.................................................................................................................................................................................................................................................................................T---T-----------------CAACGAATCTAGTATTCCCATT..........................................................	24	1	1.00	1	1	0	0	0
............TTCATA--------CGGACGGAGTGA------CAGACC------------------...................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0
....................................GA------CAGACC------------------GATGTGGCCAGGTCGACTCG...............................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0
...............ATA--------CGGACGGAGTGA------CAGACC------------------GATG...............................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
...................................TGA------CAGACC------------------GATGTGGCCAGGTCGAC..................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0
................TA--------CGGACGGAGTGA------CAGACC------------------GATG...............................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0
................................................................................TCGACTCGTCTAGTGATCTCGATCA..............................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0

droYak3

TAGATCTTTACGTTTATA--------CGGACA----GA------CAGATGGATGGACAGA------CAGACTTGGCGAGATCGACTCGGCTATTGATCCTGATCAAGAATATATATA---TACA---TTATAT----------------------ATGTATATATACATTA------TACATTATATGGTCGAAGACACATCCTTCTGCCTGTTACATACT-T--------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
................................................................................................TCCTGATCAAGAATATATATA---TA.............................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

GAGATCTCGACGTTCATA--------CGGGCGGACGGA------CAGACGGACGGACAGT------CGGATATGGCCAGATCGACAAGGCTATGGATTGTGATCAAGAATATATAA---TATATT--ATATACA-------------------------TTATATATATTATA----TGCTTTATGTAGTCGGAAACGTTTCCTTCTGCCAGTTACATACT-T--------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dpe_861

scaffold_16:1738725-1738875 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-28.9	-28.9	-28.9