ID:dpe_853 |
Coordinate:scaffold_16:864496-864646 + |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in alignment | mismatch in read |
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| -8.7 | -8.7 | -8.0 | -8.0 |
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intron [Dper\GL21211-in]; exon [dper_GLEANR_3137:2]; CDS [Dper\GL21211-cds]; intron [Dper\GL21211-in]
No Repeatable elements found
| -----------------#################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AATCTTTCTTTCAACAGCTACAACAACAGTGTGACGGCGCTTCGGCCGGGGTATTGCTCGTCGCGCCGGGTTCCACAGAAATTTGTTTGATCTCTGGGTGTGGTAGCTGAAAGAGAGTCTCGTGGTTCAAGAATAAGGCGGGGCTTGAGCGGTAACAAAAGAGATAGAGTTATTTTTATTGTTCTTAAAAGGTAGAAAGTTTGGTAGGTGCGCGGGTTTTTCTTCTGGCTCTTCCTTCAGGGTCGTCCTTC ***************************************************************************************...(((((.........((((....(((...)))..)))).........)).)))************************************************************************************************************* |
Read size | # Mismatch | Hit Count | Total Norm | Total | M042 female body |
V111 male body |
V057 head |
M021 embryo |
V042 embryo |
V050 head |
|---|---|---|---|---|---|---|---|---|---|---|---|
| .......................................................................................TGATCTCTGGGTGTGGTAGCTGAAAG.......................................................................................................................................... | 26 | 0 | 20 | 2.75 | 55 | 55 | 0 | 0 | 0 | 0 | 0 |
| .......................................................................................TGATCTCTGGGTGTGGTAGCTG.............................................................................................................................................. | 22 | 0 | 20 | 1.35 | 27 | 27 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................................................................................................TGTTCTTAAAAGGTAGAAAGTTTGG............................................... | 25 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................................................................................................................................TAGAAAGTTCAGCAGGTGCGCG..................................... | 22 | 3 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| .......................................................................................TGATCTCTGGGTGTGGTAGC................................................................................................................................................ | 20 | 0 | 20 | 0.65 | 13 | 6 | 7 | 0 | 0 | 0 | 0 |
| .......................................................................................TGATCTCTGGGTGTGGTAGCTGA............................................................................................................................................. | 23 | 0 | 20 | 0.60 | 12 | 0 | 12 | 0 | 0 | 0 | 0 |
| .......................................................................................TGATCTCTGGGTGTGGTAGCT............................................................................................................................................... | 21 | 0 | 20 | 0.50 | 10 | 9 | 0 | 0 | 0 | 1 | 0 |
| .......................................................................................TGATCTCTGGGTGTGGTAGCTGAA............................................................................................................................................ | 24 | 0 | 20 | 0.45 | 9 | 9 | 0 | 0 | 0 | 0 | 0 |
| .......................................................................................TGATCTCTGGGTGTGGTAG................................................................................................................................................. | 19 | 0 | 20 | 0.40 | 8 | 8 | 0 | 0 | 0 | 0 | 0 |
| .......................................................................................TGATCTCTGGGTGTGGTAGCTGAAAGA......................................................................................................................................... | 27 | 0 | 20 | 0.30 | 6 | 4 | 1 | 0 | 1 | 0 | 0 |
| .....................................................................................................................TCTCGTGGTTCAAGAATAAGGCGGG............................................................................................................. | 25 | 0 | 20 | 0.20 | 4 | 4 | 0 | 0 | 0 | 0 | 0 |
| .......................................................................................TGATCTCTGGGTGTGGTAGCTGAAA........................................................................................................................................... | 25 | 0 | 20 | 0.20 | 4 | 0 | 4 | 0 | 0 | 0 | 0 |
| ..........................................................................................................................TGGTTCAAGAATAAGGCGGGGCT.......................................................................................................... | 23 | 0 | 16 | 0.19 | 3 | 3 | 0 | 0 | 0 | 0 | 0 |
| ....................................................................................................................................................................TAGAGTTATTTTTATTGTTCTTAAAAGG........................................................... | 28 | 0 | 16 | 0.19 | 3 | 3 | 0 | 0 | 0 | 0 | 0 |
| ..............................................................................................................................TCAAGAATAAGGCGGGGCTTGA....................................................................................................... | 22 | 0 | 19 | 0.16 | 3 | 3 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................GATCTCTGGGTGTGGTAGCTG.............................................................................................................................................. | 21 | 0 | 20 | 0.15 | 3 | 3 | 0 | 0 | 0 | 0 | 0 |
| .......................................................................................TGATCTCTGGGTGTGGTAGCTT.............................................................................................................................................. | 22 | 1 | 20 | 0.15 | 3 | 3 | 0 | 0 | 0 | 0 | 0 |
| .................................................................................TTTGTTTGATCTCTGGGTGTGG.................................................................................................................................................... | 22 | 0 | 20 | 0.15 | 3 | 1 | 0 | 0 | 2 | 0 | 0 |
| .....................................................................................................................TCTCGTGGTTCAAGAATAAGGCGG.............................................................................................................. | 24 | 0 | 20 | 0.10 | 2 | 2 | 0 | 0 | 0 | 0 | 0 |
| ....................................................................................................TGGTAGCTGAAAGAGAGTC.................................................................................................................................... | 19 | 0 | 20 | 0.10 | 2 | 0 | 2 | 0 | 0 | 0 | 0 |
| ........................................................................................GATCTCTGGGTGTGGTAGCTGAAAG.......................................................................................................................................... | 25 | 0 | 20 | 0.10 | 2 | 2 | 0 | 0 | 0 | 0 | 0 |
| ......................................................................................TTGATCTCTGGGTGTGGTAGCTG.............................................................................................................................................. | 23 | 0 | 20 | 0.10 | 2 | 2 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................................CTGAAAGAGAGTCTCGTGGTT............................................................................................................................ | 21 | 0 | 20 | 0.10 | 2 | 0 | 2 | 0 | 0 | 0 | 0 |
| ..............................................................................................................................................TCTTGAGCGGTAAAAAAA........................................................................................... | 18 | 2 | 20 | 0.10 | 2 | 2 | 0 | 0 | 0 | 0 | 0 |
| ...........................................GGCCGGGTTATTGTTCGGC............................................................................................................................................................................................. | 19 | 3 | 15 | 0.07 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| .............................................................................................................................TTCAAGAATAAGGCGGGGCTTG........................................................................................................ | 22 | 0 | 15 | 0.07 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .............................................................................................................................TTCAAGAATAAGGCGGGGC........................................................................................................... | 19 | 0 | 16 | 0.06 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .....................................................................................................................................................................AGAGTTATTTTTATTGTTCTTAAGAGG........................................................... | 27 | 1 | 16 | 0.06 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................................................CGTGGTTCCAAAATAAGGCGGGGCT.......................................................................................................... | 25 | 2 | 17 | 0.06 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ..............................................................................................................................TCAAGAATAAGGCGGGGCTTGAGCGG................................................................................................... | 26 | 0 | 18 | 0.06 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ..............................................................................................................................TCAAGAATAAGGCGGGGCTTG........................................................................................................ | 21 | 0 | 19 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ..............................................................................................................................TCAAGAATAAGGCGGGGCTTGAGA..................................................................................................... | 24 | 1 | 19 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................................................................................................................................TTGGTAGACGCGCAGGTTT................................ | 19 | 3 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .......................................................................................TTATCTCTGGGTGTGGTAGCTG.............................................................................................................................................. | 22 | 1 | 20 | 0.05 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| .....................................................................................................GGTAGCTGAAAGAGAGTCTC.................................................................................................................................. | 20 | 0 | 20 | 0.05 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ...............................................................................................................................CAAGAATAAGGCGGGGCTTGAGCGG................................................................................................... | 25 | 0 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ..................................................................................................................GAGTCTCGGGGTTCAAGAATAAGGC................................................................................................................ | 25 | 1 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .................................................................................TTTGTTTGATCTCTGGGTG....................................................................................................................................................... | 19 | 0 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .......................................................................................TTATCTCTGGGTGTGGTAGCTGAAAGA......................................................................................................................................... | 27 | 1 | 20 | 0.05 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| .............................................................................GAAATTTGTTTGATCTCTGGGTG....................................................................................................................................................... | 23 | 0 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ..............................................................................................................AAGAGAGTCTCGTGGTTCAAG........................................................................................................................ | 21 | 0 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .......................................................................................TGATCTCTGGGTGTGGTA.................................................................................................................................................. | 18 | 0 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .....................................................................................................................TCTCGTGGTTCAAGAATAAGGCG............................................................................................................... | 23 | 0 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .................................................................................................GTGTGGTAGCTGAAAGAGAGT..................................................................................................................................... | 21 | 0 | 20 | 0.05 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| .......................................................................................GGATCTCTGGGTGTGGTAGCTGAAAG.......................................................................................................................................... | 26 | 1 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .....................................................................................................................TCTCGTGGTTCAAGAATAAGGC................................................................................................................ | 22 | 0 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .............................................................................................................AAAGAGAGTCTCGTGGTTCAAGAAA..................................................................................................................... | 25 | 1 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .........................................................TCGTCGCGCCGGGTTCCACAGAAA.......................................................................................................................................................................... | 24 | 0 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ....................................................................................................................................................................TAGAGTTATTTTTATTGTTC................................................................... | 20 | 0 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ....................................................................................................................................ATAATGCCGGGCTTGAGAGG................................................................................................... | 20 | 3 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 1 |
| .......................................................................................TGATCTCTGGGTGTGGTAGTA............................................................................................................................................... | 21 | 2 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ..................................................................................................................GAGTCTCGTGGTTCAAGAATAAGGC................................................................................................................ | 25 | 0 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .......................................................................................................................TCGTGGTTCAAGAATAAGGCG............................................................................................................... | 21 | 0 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ....................................................................................................TGGTAGCTGAAAGAGAGTTTC.................................................................................................................................. | 21 | 1 | 20 | 0.05 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ........................................................................................GATCTCTGGGTGTGGTAGCTGAAAA.......................................................................................................................................... | 25 | 1 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ..................................................................................................TGTGGTAGCTGAAAGAGAG...................................................................................................................................... | 19 | 0 | 20 | 0.05 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| .......................................................................................TGATCTCTGGGTGTGGTAGCTAAAAA.......................................................................................................................................... | 26 | 2 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ..................................................................................................TGTGGTAGCTGAAAGAGAGTCTCC................................................................................................................................. | 24 | 1 | 20 | 0.05 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ...................................................................................................GTGGTAGCTGAAAGAGAGTCTC.................................................................................................................................. | 22 | 0 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ..................................................................................TTGTTTGATCTCTGGGTGTGGT................................................................................................................................................... | 22 | 0 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................................................GAGAGTCTCGTGGTTCAAGAATAAGGC................................................................................................................ | 27 | 0 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .......................................................................................................................TCGTGGTTCAAGAATAAGGCGG.............................................................................................................. | 22 | 0 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .....................................................................................................................................TAAGCCGAGGCTTGAGCGG................................................................................................... | 19 | 2 | 20 | 0.05 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| ........................................................................CCACAGAAATTTGTTTGATCTCTGGG......................................................................................................................................................... | 26 | 0 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .......................................................................TCCACAGAAATTTGTTTGATCTCTG........................................................................................................................................................... | 25 | 0 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .......................................................................................TGATCTCTGGGTGTGGTAGCTGAAAT.......................................................................................................................................... | 26 | 1 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................GATCTCTGGGTGTGGTAGCTGAAA........................................................................................................................................... | 24 | 0 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ....................................................................................................TGGTAGCTGAAAGAGTGT..................................................................................................................................... | 18 | 1 | 20 | 0.05 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| .......................................................................................TGATCTCTGGGTGTGGTAGCTGAAAGAG........................................................................................................................................ | 28 | 0 | 20 | 0.05 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
|
TTAGAAAGAAAGTTGTCGATGTTGTTGTCACACTGCCGCGAAGCCGGCCCCATAACGAGCAGCGCGGCCCAAGGTGTCTTTAAACAAACTAGAGACCCACACCATCGACTTTCTCTCAGAGCACCAAGTTCTTATTCCGCCCCGAACTCGCCATTGTTTTCTCTATCTCAATAAAAATAACAAGAATTTTCCATCTTTCAAACCATCCACGCGCCCAAAAAGAAGACCGAGAAGGAAGTCCCAGCAGGAAG
*************************************************************************************************************...(((((.........((((....(((...)))..)))).........)).)))*************************************************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | M021 embryo |
M042 female body |
V111 male body |
|---|---|---|---|---|---|---|---|---|
| .....................................................AACGAGCAGCGCGGCCCAAGGTGTCTTT.......................................................................................................................................................................... | 28 | 0 | 2 | 0.50 | 1 | 1 | 0 | 0 |
| ..AGAAAGAGGGTTGTCGAAGT..................................................................................................................................................................................................................................... | 20 | 3 | 15 | 0.07 | 1 | 0 | 0 | 1 |
| ........................................................................................................TCGACTTTCTCTCAGAGCAC............................................................................................................................... | 20 | 0 | 20 | 0.05 | 1 | 0 | 1 | 0 |
| ..................................................................................................................CTCAGAGCACCAAGTTCTTTTTCCGCCC............................................................................................................. | 28 | 1 | 20 | 0.05 | 1 | 0 | 1 | 0 |
| ..........................................................GCAGCGCGGCCCAAGGTGT.............................................................................................................................................................................. | 19 | 0 | 20 | 0.05 | 1 | 0 | 1 | 0 |
| .................................................................................................CACACCATCGACTTTCTCTCAG.................................................................................................................................... | 22 | 0 | 20 | 0.05 | 1 | 0 | 1 | 0 |
| ...............................................................................................................TCTCTCAGAGCACCAAGTTCTTAT.................................................................................................................... | 24 | 0 | 20 | 0.05 | 1 | 0 | 1 | 0 |
| ..............................................................................................................TTCTCTCAGAGCACCAAGTTCTTAT.................................................................................................................... | 25 | 0 | 20 | 0.05 | 1 | 0 | 0 | 1 |
| Species | Coordinate | ID | Alignment |
|---|---|---|---|
| droPer2 | scaffold_16:864446-864696 + | dpe_853 | AATCTTTCTTTCAACAGCTACAACAACAGTGTGACGGCGCTTCGGCCGGGGTATTGCTCGTCGCGCCGGGTTCCACAGAAATTTGTTTGATCTCTGGGTGTGGTAGCTGAAAGAGAGTCTCGTGGTTCAAGAATAAGGCGGGGCTTGAGCGGTAACAAAAGAGATAGAGTTATTTTTATTGTTCTTAAAAGGTAGAAAGTTTGGTAGGTGCGCGGGTTTTTCTTCTGGCTCTTCCTTCAGGGTCGTCCTTC |
| dp5 | 4_group4:6029579-6029829 - | AATCTTTCTTTCAACAGCTACAACAACAGTGTGATGGCGCTTCGGCCGGGGTATTGCTCGTCGCGCCGGGTTCCACAGAAATTTGTTTGATCTCTGGGTGTGGTAGCTGAAAGAGAGTCTCGTGGTTCAAGAATAAGGCGGGGCTTGAGCGGAAACAAAAGAGATAGAGTTATTTTTATTGTTCTTAAAAGGTAGAAAGTTTGGTAGGTGCGCGGGTTTTTCTTCTGGCTCTTCCTTAGGGGTCGTCCTTC |
| Species | Read alignment | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| droPer2 |
|
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| dp5 |
|
Generated: 06/08/2015 at 03:21 PM