dpe_851

Name	Class	Family	Strand
Hopers2	DNA	hAT-hobo	+

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------#####--------------------------------------------- AATATTAAATGACACGACAAAGAGTGCGAGAGAGACAGAAAATCAGTCTGAGCGTGACGTCGCGCGCTGCGTAGCCACTTCAAAATGATTTCTTGCTTTTGGCTACAAAAATTATCCGATCTGATCCAGATTCAGCAACCGGATAGATATGGTCATTCTCTATGATTCTGCGTTTTTAGTTTAGATTGATATTTCCTGCAGATTAGGACTATCGTTTAAATTGAAAGCGAGGGCTGATATGAGACGCCGTC ******************************************************..((((........(((((((...(((.........)))....)))))))..........))))......***************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M042 female body	V057 head	V111 male body	M021 embryo
.............................GAGAGACAGAAAATCAGTCTGAGC......................................................................................................................................................................................................	24	0	20	0.70	14	14	0	0	0
.....................................................................................................................................................................TTCTGCGTTTTTAGTTAAAA..................................................................	20	2	5	0.20	1	1	0	0	0
...............GACAAAGAGTGCGAGAGAGACA......................................................................................................................................................................................................................	22	0	20	0.10	2	0	0	0	2
........................................................ACGTCGCGCGCTGCGTAGCC...............................................................................................................................................................................	20	0	10	0.10	1	0	1	0	0
............................................GGTCTGAGCGTGACGTCGCGC..........................................................................................................................................................................................	21	1	12	0.08	1	0	1	0	0
.........................................ATCAGTCTGAGCGTGACGTCGC............................................................................................................................................................................................	22	0	15	0.07	1	1	0	0	0
.........................................................................................................CAAAAATTATCCGATCTGATC.............................................................................................................................	21	0	17	0.06	1	1	0	0	0
.....................................................................................................GCTACAAAGATTATCCGATCT.................................................................................................................................	21	1	17	0.06	1	1	0	0	0
....TTAAATGACACGACAAAGAGT..................................................................................................................................................................................................................................	21	0	17	0.06	1	0	0	1	0
..................................................................................................................................TTCAGCAACCGGATAGATATGG...................................................................................................	22	0	20	0.05	1	1	0	0	0
................................................................................................................................................................TATGATTCTGCGTTTTTAG........................................................................	19	0	20	0.05	1	1	0	0	0
...............................................................................................................TTATCCGATCTGATCCAGATT.......................................................................................................................	21	0	20	0.05	1	1	0	0	0
..............................................................................................................ATTATCCGATCTGATCCAGAT........................................................................................................................	21	0	20	0.05	1	0	0	1	0
..................................................................................................................TCCGATCTGATCCAGATTCAGCAACCG..............................................................................................................	27	0	20	0.05	1	1	0	0	0

TTATAATTTACTGTGCTGTTTCTCACGCTCTCTCTGTCTTTTAGTCAGACTCGCACTGCAGCGCGCGACGCATCGGTGAAGTTTTACTAAAGAACGAAAACCGATGTTTTTAATAGGCTAGACTAGGTCTAAGTCGTTGGCCTATCTATACCAGTAAGAGATACTAAGACGCAAAAATCAAATCTAACTATAAAGGACGTCTAATCCTGATAGCAAATTTAACTTTCGCTCCCGACTATACTCTGCGGCAG ***************************************************************************************************************************..((((........(((((((...(((.........)))....)))))))..........))))......******************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M042 female body	M021 embryo	V111 male body
..............................................................GCGCGACGCATCGGTGAAGTTTGACT...................................................................................................................................................................	26	1	1	1.00	1	1	0	0
..............GCTGTTTCTCACGCTCTCTCTGT......................................................................................................................................................................................................................	23	0	20	0.25	5	5	0	0
....................................................................................................................GCTAGACTAGGTCTAAGTCGTTGG...............................................................................................................	24	0	20	0.15	3	3	0	0
....................................................................................................CCGATGTTTTTAATAGGCTAGACT...............................................................................................................................	24	0	15	0.07	1	1	0	0
...................................................................................................................................AGTCGTTGGCCTATCTATACCAGTA...............................................................................................	25	0	20	0.05	1	1	0	0
...............................................................................................................................TCTAAGTCGTTGGCCTATCTA.......................................................................................................	21	0	20	0.05	1	0	1	0
................................................................................................................................GTAAGTCGTTGGCCTATCTATACC...................................................................................................	24	1	20	0.05	1	1	0	0
...................TTCTCACGCTCTCTCTGTCTTT..................................................................................................................................................................................................................	22	0	20	0.05	1	1	0	0
.....................CTCACGCTCTCTCTGTCTTT..................................................................................................................................................................................................................	20	0	20	0.05	1	1	0	0
...............CTGTTTCTCACTCTCTCTCTGTCTTT..................................................................................................................................................................................................................	26	1	20	0.05	1	1	0	0
................................................................GCGACGCATCGGTGAAGTT........................................................................................................................................................................	19	0	20	0.05	1	0	0	1

Species	Coordinate	ID	Alignment
droPer2	scaffold_16:761256-761506 +	dpe_851	AATATTAAATGACACGACAAAGAGTGCGAGAGAGACAGAAAATCAGTCTGAGCGTGACGTCGCGCGCTGCGTAGCCACTTCAAAATGATTTCTTGCTTTTGGCTACAAAAATTATCCGATCTGATCCAGATTCAGCAACCGGATAGATATGGTCATTCTCTATGATTCTGCGTTTTTAGTTTAGATTGATATTTCCTGCAGATTAGGACTATCGTTTAAATTGAAAGCGAGGGCTGATATGAGACGCCGTC
dp5	4_group4:6133505-6133755 -		AATATTAAATGACACGACAAAGAGTGCGAGAGAGACAGAAAATCAGTCTGAGCGTGACGTCGGGCGCTGCGTAGCCACTGCAAATTGATTTGTTCCTTTTGGCTATAAAAATGATCCGATCTGATCCAGATTCAGCAACCGGATAGATATGGTCATTCTCTATGATTCTGCGTTTTTAGTTTAGATTGATATTTCCTGCAGATTAGGGCTATCGTTTAAATTGAAAGCGAGGGCTGATATGAGACGCCGTC
droWil2	scf2_1100000004909:2087475-2087517 +		A-------------------AGAGTGTGGGGAAGATGGAAAGTCAGTCTGTGCCCGAGACCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1	scf7180000767308:16123-16161 +		A----------------------------------------------------------------------------------------------------------------------------------------------------------TTCTCTAAAAATCTGTGTTTTTAGTTTGGTTTG-TATTT---------------------------------------------------------
droEre2	scaffold_4929:22862120-22862183 +		T--------------------------------------------------------------------------------------------CGTTTCTGACAATATAAATTATATATTCTTGATCAGGTTCAATAGCCGAGTCGATTTGGCAAT-----------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droPer2

AATATTAAATGACACGACAAAGAGTGCGAGAGAGACAGAAAATCAGTCTGAGCGTGACGTCGCGCGCTGCGTAGCCACTTCAAAATGATTTCTTGCTTTTGGCTACAAAAATTATCCGATCTGATCCAGATTCAGCAACCGGATAGATATGGTCATTCTCTATGATTCTGCGTTTTTAGTTTAGATTGATATTTCCTGCAGATTAGGACTATCGTTTAAATTGAAAGCGAGGGCTGATATGAGACGCCGTC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.............................GAGAGACAGAAAATCAGTCTGAGC......................................................................................................................................................................................................	24	20	0.70	14	0	14	0	0	0	0
...............GACAAAGAGTGCGAGAGAGACA......................................................................................................................................................................................................................	22	20	0.10	2	2	0	0	0	0	0
........................................................ACGTCGCGCGCTGCGTAGCC...............................................................................................................................................................................	20	10	0.10	1	0	0	0	0	1	0
.........................................ATCAGTCTGAGCGTGACGTCGC............................................................................................................................................................................................	22	15	0.07	1	0	1	0	0	0	0
.........................................................................................................CAAAAATTATCCGATCTGATC.............................................................................................................................	21	17	0.06	1	0	1	0	0	0	0
....TTAAATGACACGACAAAGAGT..................................................................................................................................................................................................................................	21	17	0.06	1	0	0	0	0	0	1
..................................................................................................................................TTCAGCAACCGGATAGATATGG...................................................................................................	22	20	0.05	1	0	1	0	0	0	0
................................................................................................................................................................TATGATTCTGCGTTTTTAG........................................................................	19	20	0.05	1	0	1	0	0	0	0
...............................................................................................................TTATCCGATCTGATCCAGATT.......................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
..............................................................................................................ATTATCCGATCTGATCCAGAT........................................................................................................................	21	20	0.05	1	0	0	0	0	0	1
..................................................................................................................TCCGATCTGATCCAGATTCAGCAACCG..............................................................................................................	27	20	0.05	1	0	1	0	0	0	0

dp5

AATATTAAATGACACGACAAAGAGTGCGAGAGAGACAGAAAATCAGTCTGAGCGTGACGTCGGGCGCTGCGTAGCCACTGCAAATTGATTTGTTCCTTTTGGCTATAAAAATGATCCGATCTGATCCAGATTCAGCAACCGGATAGATATGGTCATTCTCTATGATTCTGCGTTTTTAGTTTAGATTGATATTTCCTGCAGATTAGGGCTATCGTTTAAATTGAAAGCGAGGGCTGATATGAGACGCCGTC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.........................................ATCAGTCTGAGCGTGACGTCGG............................................................................................................................................................................................	22	20	15.25	305	0	0	0	0	0	0	0	0	305	0
..............................................................................................................................................ATAGATATGGTCATTCTCTATGATTC...................................................................................	26	20	1.30	26	0	26	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................AGCGAGGGCTGATATGAGACG.....	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................TATTTCCTGCAGATTAGGGCTATC......................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................ATCCGATCTGATCCAGATTCA.....................................................................................................................	21	20	0.75	15	0	15	0	0	0	0	0	0	0	0
....................................AGAAAATCAGTCTGAGCGTGA..................................................................................................................................................................................................	21	20	0.75	15	0	15	0	0	0	0	0	0	0	0
..............................................................................TGCAAATTGATTTGTTCCTTT........................................................................................................................................................	21	20	0.65	13	0	13	0	0	0	0	0	0	0	0
............................................AGTCTGAGCGTGACGTCGG............................................................................................................................................................................................	19	20	0.30	6	0	0	0	0	0	0	6	0	0	0
.......................................AAATCAGTCTGAGCGTGACGTCGGG...........................................................................................................................................................................................	25	20	0.30	6	0	0	0	0	0	0	0	6	0	0
...............................................................................................................TGATCCGATCTGATCCAGATTC......................................................................................................................	22	20	0.25	5	0	5	0	0	0	0	0	0	0	0
..................................................................................................................TCCGATCTGATCCAGATTCAGCAACCGG.............................................................................................................	28	20	0.25	5	0	5	0	0	0	0	0	0	0	0
........................................................................................................................CTGATCCAGATTCAGCAACCGGA............................................................................................................	23	20	0.25	5	0	5	0	0	0	0	0	0	0	0
..TATTAAATGACACGACAAAGAGTGC................................................................................................................................................................................................................................	25	5	0.20	1	0	1	0	0	0	0	0	0	0	0
..TATTAAATGACACGACAAAGAGT..................................................................................................................................................................................................................................	23	5	0.20	1	0	1	0	0	0	0	0	0	0	0
...........................GAGAGAGACAGAAAATCAGTCTGAGC......................................................................................................................................................................................................	26	20	0.15	3	0	3	0	0	0	0	0	0	0	0
...................................................................................................................................................TATGGTCATTCTCTATGATTCTGCGTT.............................................................................	27	20	0.15	3	0	3	0	0	0	0	0	0	0	0
................................................................................................................................................................TATGATTCTGCGTTTTTAGTT......................................................................	21	20	0.15	3	0	0	0	0	0	0	0	3	0	0
.................CAAAGAGTGCGAGAGAGACA......................................................................................................................................................................................................................	20	16	0.13	2	0	2	0	0	0	0	0	0	0	0
..............CGACAAAGAGTGCGAGAGAGAC.......................................................................................................................................................................................................................	22	16	0.13	2	0	0	0	0	0	0	0	0	2	0
.........TGACACGACAAAGAGTGCC...............................................................................................................................................................................................................................	19	9	0.11	1	0	0	0	0	1	0	0	0	0	0
...................................................................................................................CCGATCTGATCCAGATTCAGCAACC...............................................................................................................	25	20	0.10	2	0	2	0	0	0	0	0	0	0	0
............................................................................................TTCCTTTTGGCTATAAAAATGA.........................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	2	0
.........................................................................................................TAAAAATGATCCGATCTGATCCAGA.........................................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	2	0
........................................................ACGTCGGGCGCTGCGTAGCC...............................................................................................................................................................................	20	20	0.10	2	0	0	0	0	0	2	0	0	0	0
...............................................................................................................TGATCCGATCTGATCCAGATTCA.....................................................................................................................	23	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.............ACGACAAAGAGTGCGAGAGAGACAGA....................................................................................................................................................................................................................	26	14	0.07	1	0	0	0	0	0	0	1	0	0	0
..........GACACGACAAAGAGTGCGAGAGAGA........................................................................................................................................................................................................................	25	14	0.07	1	0	1	0	0	0	0	0	0	0	0
.............ACGACAAAGAGTGCGAGAGA..........................................................................................................................................................................................................................	20	15	0.07	1	0	1	0	0	0	0	0	0	0	0
...............GACAAAGAGTGCGAGAGAGA........................................................................................................................................................................................................................	20	16	0.06	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................GATCCGATCTGATCCAGATTCAGCAAC................................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0
.............................................................GGGCGCTGCGTAGCCACTG...........................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................ATCCGATCTGATCCAGATTCAGCAACCG..............................................................................................................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................TGATCCGATCTGATCCAGATTCAGC...................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................GATTCAGCAACCGGATAGATATGG...................................................................................................	24	20	0.05	1	0	0	0	0	1	0	0	0	0	0
....................................................................................................................................CAGCAACCGGATAGATATGG...................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	1	0
.....................................................GTGACGTCGGGCGCTGCGTA..................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1	0	0	0	0
........................................AATCAGTCTGAGCGTGACGTCGGGC..........................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	1	0	0	0	0	0
..............................................................................................................ATGATCCGATCTGATCCAGAT........................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................TGATCCAGATTCAGCAACCGGA............................................................................................................	22	20	0.05	1	0	0	0	0	1	0	0	0	0	0
........................................................................................................................CTGATCCAGATTCAGCAACCG..............................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
................................................TGAGCGTGACGTCGGGCG.........................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	1	0	0
.....................................................................................................GCTATAAAAATGATCCGATCTGATCCA...........................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................TCCGATCTGATCCAGATTCAGCAACC...............................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................TTCTCTATGATTCTGCGTTTTT..........................................................................	22	20	0.05	1	0	0	0	0	0	0	0	1	0	0
...........ACACGACAAAGAGTGCGAG.............................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................ATTCAGCAACCGGATAGATATGG...................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................CGATCTGATCCAGATTCAG....................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...............................................................................GCAAATTGATTTGTTCCTTTTGGC....................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................AGATTCAGCAACCGGATAGATATGGC..................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0
................................................................................................................GATCCGATCTGATCCAGATTCAGCAACC...............................................................................................................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................TCCTTTTGGCTATAAAAATG..........................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................CCAGATTCAGCAACCGGATAGA........................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................TCAGCAACCGGATAGATATGG...................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	1	0
..................................................AGCGTGACGTCGGGCGCTGCGTAGCC...............................................................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0
............................................................................................................................TCCAGATTCAGCAACCGGATAGATA......................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................ATAGATATGGTCATTCTCTATGA......................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0
...............................................................................................................TGATCCGATCTGATCCAGATTCAGCAA.................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droWil2

A-------------------AGAGTGTGGGGAAGATGGAAAGTCAGTCTGTGCCCGAGACCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

droRho1

A----------------------------------------------------------------------------------------------------------------------------------------------------------TTCTCTAAAAATCTGTGTTTTTAGTTTGGTTTG-TATTT---------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEre2

T--------------------------------------------------------------------------------------------CGTTTCTGACAATATAAATTATATATTCTTGATCAGGTTCAATAGCCGAGTCGATTTGGCAAT-----------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
......................................................................................................................TTCTTGATCAGGTTCAATAGCCGAGT...........................................................................................................	26	3	3.00	9	0	0	0	0	0	0	9
.......................................................................................................................TCTTGATCAGGTTCAATAGCCGAGTC..........................................................................................................	26	3	0.33	1	1	0	0	0	0	0	0
.......................................................................................................................TCTTGATCAGGTTCAATAGCCGA.............................................................................................................	23	4	0.25	1	1	0	0	0	0	0	0

dpe_851

scaffold_16:761306-761456 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-9.7	-9.7	-9.5