dpe_84

CAAACTGAAATATAATTCCTGGAAGCCATCTAGGAGCCTGTTCTACGTGCGAGTTCCACCATGCAAGTTTTGAGCGTATATGAATCCAAAAACTTGACACGTTGAGCTCGTGCGTGGTGCAGCCAAATCATCGCAGCGCATCCACCAGAACTACTCGTAGAG *********************************..((((.((((((((((((((.((..((((((((((.................)))))))).)).)).)))))))))))))).))))....**********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V057 head	V050 head	M021 embryo	V111 male body	M042 female body	V042 embryo
..........................................................................................AACTTGACACGTTGAGCTCGT...................................................	21	0	1	162.00	162	73	52	29	3	2	3
..................................................GAGTTCCACCATGCAAGTTTT...........................................................................................	21	0	1	56.00	56	32	19	0	2	3	0
.........................................................................................AAACTTGACACGTTGAGCTCG....................................................	21	0	1	17.00	17	8	8	0	0	1	0
.........................................................................................AAACTTGACACGTTGAGCTCGT...................................................	22	0	1	15.00	15	5	8	2	0	0	0
..........................................................................................AACTTGACACGTTGAGCTCG....................................................	20	0	1	12.00	12	9	2	0	1	0	0
.........................................................................................AAACTTGACACGTTGAGCTC.....................................................	20	0	1	9.00	9	6	3	0	0	0	0
..................................................GAGTTCCACCATGCAAGTTT............................................................................................	20	0	1	7.00	7	3	2	0	2	0	0
..........................................................................................AACTTGACACGTTGAGCTCGTT..................................................	22	1	1	7.00	7	5	2	0	0	0	0
........................................................................................AAAACTTGACACGTTGAGCTCGT...................................................	23	0	1	7.00	7	3	3	0	1	0	0
.................................................CGAGTTCCACCATGCAAGTTTT...........................................................................................	22	0	1	7.00	7	4	3	0	0	0	0
..........................................................................................AACTTGACACGTTGAGCTCGTG..................................................	22	0	1	3.00	3	2	1	0	0	0	0
........................................................................................AAAACTTGACACGTTGAGCTCG....................................................	22	0	1	2.00	2	2	0	0	0	0	0
..........................................................................................AACTTGACACGCTGAGCTCGT...................................................	21	1	1	2.00	2	2	0	0	0	0	0
..........................................................................................AACTTGACACGTTGAGCTC.....................................................	19	0	1	2.00	2	2	0	0	0	0	0
..........................................................................................AACTTGACACGTTGAGCTCGG...................................................	21	1	1	2.00	2	0	0	2	0	0	0
..........................................................................................AACTTGACACGTTGCGCTCGT...................................................	21	1	1	2.00	2	2	0	0	0	0	0
..................................................GAGTTCCACCATGCAAGT..............................................................................................	18	0	1	2.00	2	2	0	0	0	0	0
..........................................................................................AACTTGACACGCGGGGCTCGT...................................................	21	3	1	1.00	1	1	0	0	0	0	0
..................................................GAGTTCCACCATCCACGTTTT...........................................................................................	21	2	1	1.00	1	1	0	0	0	0	0
..................................................GAGTTCCACCATGCAAGCTTT...........................................................................................	21	1	1	1.00	1	1	0	0	0	0	0
.........................................................................................AAACTTGACACGTTGAGCACA....................................................	21	2	1	1.00	1	1	0	0	0	0	0
..........................................................................................AACTTGACACGTTGAGCTTGT...................................................	21	1	1	1.00	1	1	0	0	0	0	0
..........................................................................................AGCTTGACACGTTGAGCTCGT...................................................	21	1	1	1.00	1	1	0	0	0	0	0
........................................................................................AAAACTTGACACGTTGAGCTC.....................................................	21	0	1	1.00	1	1	0	0	0	0	0
..........................................................................................AACTTGACACGTTGCGCT......................................................	18	1	1	1.00	1	1	0	0	0	0	0
........................................................................................AAAACGTGACACGTCGAGCTTGT...................................................	23	3	1	1.00	1	1	0	0	0	0	0
..........................................................................................AAATTGACACGTTAAGCTCGT...................................................	21	2	1	1.00	1	0	1	0	0	0	0
..........................................................................................AACCTGACACGTTGAGCTCGT...................................................	21	1	1	1.00	1	1	0	0	0	0	0
..................................................GAGGTCCACCATGCAAGTTTT...........................................................................................	21	1	1	1.00	1	1	0	0	0	0	0
..................................................CAGGTCCACCATGCAAGTTTT...........................................................................................	21	2	1	1.00	1	1	0	0	0	0	0
.........................................................................................AAACTTGACACGTTGAGCT......................................................	19	0	1	1.00	1	0	1	0	0	0	0
.........................................................................................AATCTTGACACGTTGAGCTCG....................................................	21	1	1	1.00	1	1	0	0	0	0	0
..........................................................................................AATTTGACACGTTGAGCTCGT...................................................	21	1	1	1.00	1	1	0	0	0	0	0
..........................................................................................AACTTGACAAGTTGAGCTCGT...................................................	21	1	1	1.00	1	0	1	0	0	0	0
........................................................................................AAAGGTTGACACGTTAAGCTCG....................................................	22	3	1	1.00	1	1	0	0	0	0	0
..........................................................................................AACTTGACACGTTAAGCTCGT...................................................	21	1	1	1.00	1	1	0	0	0	0	0
..........................................................................................AACTTGACACGTTGTGCTCGT...................................................	21	1	1	1.00	1	1	0	0	0	0	0
..........................................................................................AACTTGACCCGTTGAGCTCGT...................................................	21	1	1	1.00	1	1	0	0	0	0	0
..........................................................................................AACTTGACACGTTGCACTCGT...................................................	21	2	1	1.00	1	0	1	0	0	0	0
..........................................................................................AACTTGACACGGTGAGCTCG....................................................	20	1	1	1.00	1	1	0	0	0	0	0
.........................................................................................AAACTTCACACGTTGAGTTCG....................................................	21	2	1	1.00	1	1	0	0	0	0	0
..................................................GAGCTCCACCATGCAAGATTT...........................................................................................	21	2	1	1.00	1	1	0	0	0	0	0
..................................................GAGTTCCAACATGCAAGTTTT...........................................................................................	21	1	1	1.00	1	0	0	0	0	1	0
..................................................GAGTTCCACAATGCAAGTTTT...........................................................................................	21	1	1	1.00	1	1	0	0	0	0	0
..................................................GAGTTCCACCCTGCAAGTTTT...........................................................................................	21	1	1	1.00	1	1	0	0	0	0	0
..........................................................................................AACTTGATACGTTGAGCTCGT...................................................	21	1	1	1.00	1	1	0	0	0	0	0
..........................................................................................TACTTGACACGTTAAGCTCTT...................................................	21	3	1	1.00	1	1	0	0	0	0	0
...................................................AGTTCCACCATGCAAGTTTTG..........................................................................................	21	0	1	1.00	1	0	0	0	0	1	0
..........................................................................................AACTTGACGCGTTGAGCTCGT...................................................	21	1	1	1.00	1	1	0	0	0	0	0
..........................................................................................AACTTGACACGTTGACCTCTTG..................................................	22	2	1	1.00	1	1	0	0	0	0	0
..........................................................................................AACTTGACACGTCGAGCTCGT...................................................	21	1	1	1.00	1	0	1	0	0	0	0
..........................................................................................AAATTGACACGTCGAGCTCGT...................................................	21	2	1	1.00	1	1	0	0	0	0	0
..........................................................................................AACTTGACACGCTAACCTCGT...................................................	21	3	2	0.50	1	1	0	0	0	0	0
.........................................................................GCGTATATGAGACCAAAAA......................................................................	19	2	2	0.50	1	0	0	0	0	1	0
..........................................................................................AAATTGAAACGTTGAGCTCGT...................................................	21	2	2	0.50	1	0	1	0	0	0	0
..........................................................................................AAACTCACACGTTGAGCTCGT...................................................	21	3	2	0.50	1	0	1	0	0	0	0
..........................................................................................AACTTCACACGTTGCTCTCGT...................................................	21	3	2	0.50	1	0	1	0	0	0	0
..................................................GAGCTCCATCATGCAAGTTT............................................................................................	20	2	2	0.50	1	1	0	0	0	0	0
..........................................................................................AAGCTGACACGTTGACCTCGT...................................................	21	3	2	0.50	1	1	0	0	0	0	0
..................................................GAGTTCTACCATGAAAGTTGT...........................................................................................	21	3	5	0.20	1	1	0	0	0	0	0
.......................AGCCATCTAGGAGCTGGT.........................................................................................................................	18	2	20	0.05	1	1	0	0	0	0	0

GTTTGACTTTATATTAAGGACCTTCGGTAGATCCTCGGACAAGATGCACGCTCAAGGTGGTACGTTCAAAACTCGCATATACTTAGGTTTTTGAACTGTGCAACTCGAGCACGCACCACGTCGGTTTAGTAGCGTCGCGTAGGTGGTCTTGATGAGCATCTC **********************************..((((.((((((((((((((.((..((((((((((.................)))))))).)).)).)))))))))))))).))))....*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M021 embryo	V057 head
.........................................................TGGTAGGTTCATAACTCG.......................................................................................	18	2	3	0.67	2	2	0
.......TTTGTATATAGGACCTTCGGT......................................................................................................................................	21	3	4	0.25	1	0	1

Species	Coordinate	ID	Type	Alignment
droPer2	scaffold_11:2701255-2701416 +	dpe_84	confident	CAAACTGAAATATAAT----------TCCTGGAAGCCAT------------CT---AGG--AGCCTGTTCTACGTGCGAGTTCCACCATGCAAGTTTTGAG--CGTATAT-GAATCCAAAAACTTGACACGTTGAGCTCGTGCGTGGTG-CAGCCAAATCATCGCAGCGCATCCACCAGAACTACTCGTAGAG
dp5	XL_group3a:1977474-1977635 -	dps-mir-969	Known_mirbase	CAAACTGAAATATAAT----------TCCTGGAAGCCAT------------CT---AGG--AGCCTGTTCTACGTGCGAGTTCCACCATGCAAGTTTTGAG--CGTATAT-GAATCCAAAAACTTGACACGTTGAGCTCGTGCGTGGTG-CAGCCAAATCATCGCAGCGCATCCACCAGAACTAATCGTAGAG
droWil2	scf2_1100000004909:12029397-12029483 +	dwi_49	confident	C---------------------------------------------------------------CTGTCCTACGCATGAGTTCCACTAAGCAAGTTTTGGGCAT--ATTTCAAAAACAAAAACTTGACACGTTGAGCTCGTCTGTGTGA-CAG----------------------------------------
droVir3	scaffold_12928:1264099-1264232 -	dvi-mir-969	Known_mirbase	GAAATTGAAATTTCATGTGGTGTC----------GCTT-TC-AAGAGCAGCTC---GCG--CTTCTGCCCTACGCACGAGTTCCACTAATCAAGTTTTGAGCGG--ATTCGAAAGTCGAAAACTTGACACGTTGAGCTCGTCCGTGGGG-CGGC---------------------------------------
droMoj3	scaffold_6473:13724318-13724400 +	dmo_81	confident	----------------------------------------------------------------CTGTCCTACGAGCGAGTTCCACTAATCAAGTTTTGAG--T--GTTCGAAAATCAAAAACTTGACACGTTGAGCTCGTCTGTGTGG-CA-----------------------------------------
droGri2	scaffold_15203:8445755-8445844 +	dgr_54	confident	CA--------------------T----------------------------CC---GGG--TGTCTGCCACACTTACGAGTTCCACTATTCAAGTTTTGAG--CGTATTT-GAAATCAAAAACTTGACACGTTGAGCTCGTGTGTG-----------------------------------------------
droAna3	scaffold_13335:1607986-1608095 -	dan_60	confident	TA--------------------TTTTTTTTGGAA----------------------AAT--ATTCTGTTTTACGTGCGAGTTCCACTAAGCAAGTTTTGAGAAT--TTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTCCGTGGGG-CAGATAA------------------------------------
droBip1	scf7180000395454:59917-60030 +			TGTCTTGTAATTTT------------TTTTGGAA----------------------AAT--ATTCTGTTTTACGTGCGAGTTCCACTAAGCAAGTTTTGAGAAT--TTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTCCGTGGGG-CAG----------------------------------------
droKik1	scf7180000302696:1720085-1720202 +			TA--------------------AGT---------ACAA-TA-AGTGAAA-GTG---AAG--ACTCTGAGCTACGCGCGAGTTCCACTAAGCAAGTTTTGAGAAT--ATTTC-AATACAAAAACTTGACACGTTGAGCTCGTTTGTGGGGTCAGACAAA-----------------------------------
droFic1	scf7180000453872:337528-337623 -			C---------------------------------------------------------------CTGTTCTACGTGCGAGTTCCACTAGGCAAGTTTTGAGATCGTTTTTAAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGA-TGGACAACTC---------------------------------
droEle1	scf7180000491193:225605-225713 +			GT--------------------------------------------AATCTCCCAAAAA--TCTCTGTCCTACGTACGAGTTCCACTAAGCAAGTTTTGAGATCGTT-TTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGA-TGGACAA------------------------------------
droRho1	scf7180000779986:498605-498709 -			CT-----------------------------------------GGGAATCCCC--GAAA--TCTCTGTCCTACGTACGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAATACAAAAACTTGACACGTTGAGCTCGTTTGTGGGA-CGG----------------------------------------
droBia1	scf7180000301760:584987-585074 -			----------------------------------------------------------------CTGTGCCACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAATACTAAAACTTGACACGTTGAGCTCGTTTGTGGCT-TGGCC--------------------------------------
droTak1	scf7180000415843:458244-458335 -			CA--------------------T----------------------------CG---AAT--ACTCTGTCCTACGTGCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGG----------------------------------------------
droEug1	scf7180000408176:664539-664649 -			CT--------------------T----------------TCTGGGGAATCCCCCTGAAATCTCTCTGTTCTACGTGCGAGTTCCACTAAGCAAGTTTTGAGATCGTTTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGG----------------------------------------------
dm3	chrX:18018368-18018475 +	dme-mir-969	Known_mirbase	AG--------------------TG----------GCAT-TC-GGTGAATCCCC---AAG--TCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGG----------------------------------------------
droSim2	x:17118139-17118246 +	dsi-mir-969	Known_mirbase	AG--------------------TG----------GCGT-TC-GGGGAATCCCC---AAG--TCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGG----------------------------------------------
droSec2	scaffold_8:326567-326674 +	dse_88	confident	AG--------------------TG----------GCGT-TC-GAGGAATCCCC---AAG--TCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGG----------------------------------------------
droYak3	X:16642329-16642409 +	dya_48	confident	----------------------------------------------------------------CTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTTGTGG----------------------------------------------
droEre2	scaffold_4690:8346029-8346109 +	der_63	confident	----------------------------------------------------------------CTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGG----------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droPer2

CAAACTGAAATATAAT----------TCCTGGAAGCCAT------------CT---AGG--AGCCTGTTCTACGTGCGAGTTCCACCATGCAAGTTTTGAG--CGTATAT-GAATCCAAAAACTTGACACGTTGAGCTCGTGCGTGGTG-CAGCCAAATCATCGCAGCGCATCCACCAGAACTACTCGTAGAG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
........................................................................................................................AACTTGACACGTTGAGCTCGT....................................................	21	1	162.00	162	29	2	3	52	73	3
.............................................................................GAGTTCCACCATGCAAGTTTT...............................................................................................	21	1	56.00	56	0	3	0	19	32	2
.......................................................................................................................AAACTTGACACGTTGAGCTCG.....................................................	21	1	17.00	17	0	1	0	8	8	0
.......................................................................................................................AAACTTGACACGTTGAGCTCGT....................................................	22	1	15.00	15	2	0	0	8	5	0
........................................................................................................................AACTTGACACGTTGAGCTCG.....................................................	20	1	12.00	12	0	0	0	2	9	1
.......................................................................................................................AAACTTGACACGTTGAGCTC......................................................	20	1	9.00	9	0	0	0	3	6	0
.............................................................................GAGTTCCACCATGCAAGTTT................................................................................................	20	1	7.00	7	0	0	0	2	3	2
........................................................................................................................AACTTGACACGTTGAGCTCGTT...................................................	22	1	7.00	7	0	0	0	2	5	0
......................................................................................................................AAAACTTGACACGTTGAGCTCGT....................................................	23	1	7.00	7	0	0	0	3	3	1
............................................................................CGAGTTCCACCATGCAAGTTTT...............................................................................................	22	1	7.00	7	0	0	0	3	4	0
........................................................................................................................AACTTGACACGTTGAGCTCGTG...................................................	22	1	3.00	3	0	0	0	1	2	0
......................................................................................................................AAAACTTGACACGTTGAGCTCG.....................................................	22	1	2.00	2	0	0	0	0	2	0
........................................................................................................................AACTTGACACGTTGAGCTC......................................................	19	1	2.00	2	0	0	0	0	2	0
........................................................................................................................AACTTGACACGTTGAGCTCGG....................................................	21	1	2.00	2	2	0	0	0	0	0
.............................................................................GAGTTCCACCATGCAAGT..................................................................................................	18	1	2.00	2	0	0	0	0	2	0
......................................................................................................................AAAACTTGACACGTTGAGCTC......................................................	21	1	1.00	1	0	0	0	0	1	0
.......................................................................................................................AAACTTGACACGTTGAGCT.......................................................	19	1	1.00	1	0	0	0	1	0	0
..............................................................................AGTTCCACCATGCAAGTTTTG..............................................................................................	21	1	1.00	1	0	1	0	0	0	0

dp5

CAAACTGAAATATAAT----------TCCTGGAAGCCAT------------CT---AGG--AGCCTGTTCTACGTGCGAGTTCCACCATGCAAGTTTTGAG--CGTATAT-GAATCCAAAAACTTGACACGTTGAGCTCGTGCGTGGTG-CAGCCAAATCATCGCAGCGCATCCACCAGAACTAATCGTAGAG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
........................................................................................................................AACTTGACACGTTGAGCTCGT....................................................	21	1	110.00	110	1	16	10	17	2	55	6	0	1	2
.............................................................................GAGTTCCACCATGCAAGTTTT...............................................................................................	21	1	73.00	73	0	17	0	35	0	20	1	0	0	0
.......................................................................................................................AAACTTGACACGTTGAGCTC......................................................	20	1	28.00	28	2	2	0	14	0	10	0	0	0	0
.......................................................................................................................AAACTTGACACGTTGAGCTCG.....................................................	21	1	16.00	16	0	3	0	6	0	7	0	0	0	0
.............................................................................GAGTTCCACCATGCAAGTTT................................................................................................	20	1	11.00	11	0	7	0	3	0	1	0	0	0	0
.......................................................................................................................AAACTTGACACGTTGAGCTCGT....................................................	22	1	8.00	8	0	3	0	1	1	3	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCG.....................................................	20	1	7.00	7	0	1	0	1	1	4	0	0	0	0
......................................................................................................................AAAACTTGACACGTTGAGCTCG.....................................................	22	1	5.00	5	0	3	0	2	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGTT...................................................	22	1	4.00	4	0	1	0	0	0	3	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGC....................................................	21	1	4.00	4	0	0	0	4	0	0	0	0	0	0
............................................................................CGAGTTCCACCATGCAAGTTTT...............................................................................................	22	1	4.00	4	0	1	0	3	0	0	0	0	0	0
........................................................AGG--AGCCTGTTCTACGTGC....................................................................................................................	19	1	3.00	3	0	1	0	0	0	0	0	0	0	2
......................................................................................................................AAAACTTGACACGTTGAGCTCGT....................................................	23	1	3.00	3	0	1	0	1	0	1	0	0	0	0
.......................................................................................................................AAACTTGACACGTTGAGCT.......................................................	19	1	2.00	2	0	0	0	1	0	1	0	0	0	0
..............................................................................AGTTCCACCATGCAAGTTTTG..............................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.............................................................................GAGTTCCACCATGCAAGTTC................................................................................................	20	1	2.00	2	0	0	0	2	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGTG...................................................	22	1	2.00	2	0	0	0	0	1	1	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGA....................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTC......................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................AAACTTGACACGTTGAGCTCGC....................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.........................................................................................................................ACTTGACACGTTGAGCTCG.....................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................ACTTGACACGTTGAGCTCGTGT..................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0
...............................................................................GTTCCACCATGCAAGTTTT...............................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.............................................................................GAGTTCCACCATGCAAGTTTTG..............................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGTA...................................................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0
...............................................................................................................GAATCCAAAAACTTGACACGTTGAGCTCC.....................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.......................................................................................................................AAACTTGACACGTTGAGCTT......................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................ACTTGACACGTTGAGCTC......................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0

droWil2

C---------------------------------------------------------------CTGTCCTACGCATGAGTTCCACTAAGCAAGTTTTGGGCAT--ATTTCAAAAACAAAAACTTGACACGTTGAGCTCGTCTGTGTGA-CAG----------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
........................................................................................................................AACTTGACACGTTGAGCTCGT....................................................	21	1	1452.00	1452	1048	12	17	149	226
............................................................................TGAGTTCCACTAAGCAAGTTTT...............................................................................................	22	1	118.00	118	4	3	0	3	108
........................................................................................................................AACTTGACACGTTGAGCTCGG....................................................	21	1	85.00	85	85	0	0	0	0
.............................................................................GAGTTCCACTAAGCAAGTTTT...............................................................................................	21	1	63.00	63	1	1	0	12	49
.......................................................................................................................AAACTTGACACGTTGAGCTCGT....................................................	22	1	57.00	57	48	0	3	0	6
........................................................................................................................AACTTGACACGTTGAGCTCG.....................................................	20	1	49.00	49	46	1	0	0	2
..........................................................................................................................CTTGACACGTTGAGCTCGTCT..................................................	21	1	31.00	31	31	0	0	0	0
.......................................................................................................................AAACTTGACACGTTGAGCTCG.....................................................	21	1	26.00	26	25	1	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGC....................................................	21	1	23.00	23	22	0	0	1	0
...........................................................................ATGAGTTCCACTAAGCAAGTTT................................................................................................	22	1	22.00	22	0	1	0	0	21
........................................................................................................................AACTTGACACGTTGAGCTCGTT...................................................	22	1	22.00	22	4	1	2	10	5
............................................................................TGAGTTCCACTAAGCAAGTTT................................................................................................	21	1	22.00	22	0	0	0	1	21
...........................................................................ATGAGTTCCACTAAGCAAGTT.................................................................................................	21	1	14.00	14	0	0	0	0	14
........................................................................................................................AACTTGACACGTTGAGCTCGTCT..................................................	23	1	9.00	9	9	0	0	0	0
.............................................................................GAGTTCCACTAAGCAAGTTT................................................................................................	20	1	7.00	7	0	0	0	1	6
..........................................................................................................................CTTGACACGTTGAGCTCGTCC..................................................	21	1	4.00	4	4	0	0	0	0
.......................................................................................................................AAACTTGACACGTTGAGCTC......................................................	20	1	4.00	4	4	0	0	0	0
......................................................................................................................AAAACTTGACACGTTGAGCTCG.....................................................	22	1	4.00	4	4	0	0	0	0
............................................................................TGAGTTCCACTAAGCAAGTT.................................................................................................	20	1	4.00	4	0	0	0	0	4
.......................................................................................................................AAACTTGACACGTTGAGCTCGG....................................................	22	1	3.00	3	3	0	0	0	0
..............................................................................AGTTCCACTAAGCAAGTTTT...............................................................................................	20	1	3.00	3	0	0	0	1	2
...........................................................................ATGAGTTCCACTAAGCAAGTTTT...............................................................................................	23	1	3.00	3	0	0	0	0	3
.......................................................................................................................AAACTTGACACGTTGAGCTCGC....................................................	22	1	3.00	3	3	0	0	0	0
............................................................................TGAGTTCCACTAAGCAAGTTTTT..............................................................................................	23	1	3.00	3	0	0	0	0	3
........................................................................................................................AACTTGACACGTTGAGCTC......................................................	19	1	2.00	2	2	0	0	0	0
............................................................................TGAGTTCCACTAAGCAAGTTTTG..............................................................................................	23	1	2.00	2	0	0	0	0	2
.........................................................................................................................ACTTGACACGTTGAGCTCGTCT..................................................	22	1	1.00	1	1	0	0	0	0
.........................................................................................................................ACTTGACACGTTGAGCTCGTCC..................................................	22	1	1.00	1	1	0	0	0	0
............................................................................TGAGTTCCACTAAGCAAG...................................................................................................	18	1	1.00	1	0	0	0	0	1
.........................................................................................................................ACTTGACACGTTGAGCTCGT....................................................	20	1	1.00	1	0	1	0	0	0
............................................................................TGAGTTCCACTAAGCAAGTTTTA..............................................................................................	23	1	1.00	1	0	0	0	0	1
..................................................................................................GGGCAT--ATTTCAAAAACAAA.........................................................................	20	1	1.00	1	0	0	0	1	0
..........................................................................................................................CTTGACACGTTGAGCTCGTCG..................................................	21	1	1.00	1	1	0	0	0	0
.............................................................................GAGTTCCACTAAGCAAGTTTTT..............................................................................................	22	1	1.00	1	0	0	0	0	1
........................................................................................................................AACTTGACACGTTGAGCTCGTCG..................................................	23	1	1.00	1	1	0	0	0	0

droVir3

GAAATTGAAATTTCATGTGGTGTC----------GCTT-TC-AAGAGCAGCTC---GCG--CTTCTGCCCTACGCACGAGTTCCACTAATCAAGTTTTGAGCGG--ATTCGAAAGTCGAAAACTTGACACGTTGAGCTCGTCCGTGGGG-CGGC---------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells	SRR2096013 Ovary_Strain_9_oxidized	SRR2096014 Ovary_Strain_160_oxidized	SRR2096026 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096038 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096050 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096055 Ovary_Min_43	SRR2096056 Ovary_Min_46	SRR2096057 Ovary_Min_50	SRR2096058 Ovary_Min_98	SRR2096059 Ovary_Min_164	SRR2096060 Ovary_Min_193	SRR2096061 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096072 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096079 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096080 embryo_0-2h from 15to16 day old nondysgenic mothers	SRR2096081 embryo_0-2h from 15to16 day old nondysgenic mothers
........................................................................................................................AACTTGACACGTTGAGCTCGT....................................................	21	1	262.00	262	6	78	7	1	1	0	2	0	0	2	0	0	0	0	43	6	1	10	10	4	1	14	6	0	0	0	1	1	8	1	1	3	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	31	7	0	0	0	0	0	0	3	3	0	1	3	0	0	0	0	0	0
..............................................................................AGTTCCACTAATCAAGTTTTG..............................................................................................	21	1	217.00	217	0	2	32	0	0	0	0	0	0	0	0	0	0	0	21	10	8	17	19	10	0	19	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	59	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................AGTTCCACTAATCAAGTTTTGA.............................................................................................	22	1	210.00	210	0	0	0	0	0	0	0	0	0	0	0	0	0	0	50	27	10	24	18	11	0	9	17	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................AAAACTTGACACGTTGAGCTCG.....................................................	22	1	110.00	110	0	19	5	1	0	0	0	0	0	0	0	0	0	0	23	10	0	12	6	7	0	8	7	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................AAACTTGACACGTTGAGCTCG.....................................................	21	1	97.00	97	0	19	0	1	0	4	0	0	0	0	0	0	0	0	25	6	2	6	10	2	0	12	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................AAACTTGACACGTTGAGCTCGT....................................................	22	1	39.00	39	0	4	0	0	0	0	0	0	0	0	0	0	0	0	16	2	0	1	3	0	0	5	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGTT...................................................	22	1	37.00	37	0	4	2	1	0	0	1	0	0	0	0	0	0	0	8	0	0	3	0	0	2	2	1	0	0	0	0	0	2	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	4	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCG.....................................................	20	1	30.00	30	2	2	0	0	0	3	0	0	0	1	0	0	0	0	3	1	0	1	0	0	1	1	0	0	0	0	0	0	3	2	1	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................AGTTCCACTAATCAAGTTTT...............................................................................................	20	1	16.00	16	0	0	4	0	0	0	0	0	0	0	0	0	0	0	2	1	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................AAAACTTGACACGTTGAGCTC......................................................	21	1	14.00	14	1	2	1	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.............................................................................GAGTTCCACTAATCAAGTTTT...............................................................................................	21	1	14.00	14	0	0	2	0	0	0	0	0	0	0	0	0	0	0	2	1	1	2	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGG....................................................	21	1	10.00	10	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................AGTTCCACTAATCAAGTTTTGAG............................................................................................	23	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	2	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGC....................................................	21	1	7.00	7	0	4	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................GAAAACTTGACACGTTGAGCTCG.....................................................	23	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGTTT..................................................	23	1	6.00	6	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................AGTTCCACTAATCAAGTTT................................................................................................	19	1	5.00	5	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGTA...................................................	22	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................GAGTTCCACTAATCAAGTTT................................................................................................	20	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGTC...................................................	22	1	4.00	4	1	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................AAAACTTGACACGTTGAGCTCGT....................................................	23	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................AAACTTGACACGTTGAGCTC......................................................	20	1	4.00	4	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................GTTCCACTAATCAAGTTTTG..............................................................................................	20	1	4.00	4	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................AGTTCCACTAATCAAGTTTTT..............................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGTCC..................................................	23	1	3.00	3	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................AGTTCCACTAATCAAGTTTTGT.............................................................................................	22	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................GAAAACTTGACACGTTGAGCT.......................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................AAACTTGACACGTTGAGCTCGTT...................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................AAAGTCGAAAACTTGACACGTTGAGCT.......................................................	27	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................ACTTGACACGTTGAGCTCGT....................................................	20	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................AAAACTTGACACGTTGAGCTCT.....................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................AAAACTTGACACGTTGAGCTCA.....................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................CTTGACACGTTGAGCTCGTTT..................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................CGAGTTCCACTAATCAAGTTT................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................AAACTTGACACGTTGAGCTCGA....................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................GAGCGG--ATTCGAAAGTCG...........................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................GTTCCACTAATCAAGTTTTGA.............................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................AAAGTCGAAAACTTGACACGTTGAGC........................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGCT...................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................AAACTTGACACGTTGAGCTCGTTTT.................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................G--ATTCGAAAGTCGAAAACTTGA..................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................GAGTTCCACTAATCAAGTT.................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................AAAACTTGACACGTTGAGCTCGG....................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................AAACTTGACACGTTGAGCTCT.....................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCT.......................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................CGAAAACTTGACACGTTGAGC........................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................ACTTGACACGTTGAGCTCG.....................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................AAACTTGACACGTTGAGCT.......................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................GAGTTCCACTAATCAAGTTTTG..............................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTT......................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCC.......................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGTCA..................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTC......................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................ACTTGACACGTTGAGCTCGTC...................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGTCT..................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGTAAA.................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

----------------------------------------------------------------CTGTCCTACGAGCGAGTTCCACTAATCAAGTTTTGAG--T--GTTCGAAAATCAAAAACTTGACACGTTGAGCTCGTCTGTGTGG-CA-----------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
........................................................................................................................AACTTGACACGTTGAGCTCGT....................................................	21	1	260.00	260	78	4	36	50	52	40
........................................................................................................................AACTTGACACGTTGAGCTCGTT...................................................	22	1	35.00	35	11	0	2	1	5	16
.........................................................................................................................ACTTGACACGTTGAGCTCGT....................................................	20	1	11.00	11	11	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCG.....................................................	20	1	8.00	8	5	0	2	0	0	1
.....................................................................................................................AAAAACTTGACACGTTGAGCTCG.....................................................	23	1	8.00	8	2	0	0	5	0	1
.......................................................................................................................AAACTTGACACGTTGAGCTCGT....................................................	22	1	8.00	8	0	0	2	3	1	2
........................................................................................................................AACTTGACACGTTGAGCTCGC....................................................	21	1	7.00	7	0	0	0	0	7	0
.......................................................................................................................AAACTTGACACGTTGAGCTCG.....................................................	21	1	5.00	5	2	0	1	0	2	0
..............................................................................AGTTCCACTAATCAAGTTTTG..............................................................................................	21	1	5.00	5	2	0	1	2	0	0
..............................................................................AGTTCCACTAATCAAGTTTT...............................................................................................	20	1	4.00	4	3	0	0	1	0	0
.....................................................................................................................AAAAACTTGACACGTTGAGCTCGT....................................................	24	1	4.00	4	1	0	0	1	0	2
.............................................................................GAGTTCCACTAATCAAGTTTT...............................................................................................	21	1	3.00	3	0	1	2	0	0	0
..............................................................................AGTTCCACTAATCAAGTTTTGA.............................................................................................	22	1	3.00	3	0	0	0	2	0	1
..............................................................................AGTTCCACTAATCAAGTTT................................................................................................	19	1	2.00	2	0	0	1	1	0	0
.....................................................................................................................AAAAACTTGACACGTTGAGCT.......................................................	21	1	2.00	2	0	0	1	1	0	0
.......................................................................................................................AAACTTGACACGTTGAGCTCGTT...................................................	23	1	2.00	2	1	0	0	0	0	1
.............................................................................GAGTTCCACTAATCAAGTTT................................................................................................	20	1	1.00	1	0	0	0	1	0	0
.....................................................................................................................AAAAACTTGACACGTTGAGCTCGC....................................................	24	1	1.00	1	0	0	0	0	1	0
...........................................................................GCGAGTTCCACTAATCAAG...................................................................................................	19	1	1.00	1	0	0	0	0	0	1
........................................................................................................................AACTTGACACGTTGAGCTCGG....................................................	21	1	1.00	1	0	0	0	0	1	0
.....................................................................................................................AAAAACTTGACACGTTGAG.........................................................	19	1	1.00	1	0	0	1	0	0	0
......................................................................................................................AAAACTTGACACGTTGAGCTCGTT...................................................	24	1	1.00	1	0	0	0	1	0	0
.....................................................................................................................AAAAACTTGACACGTTGAGCTC......................................................	22	1	1.00	1	0	0	0	1	0	0
............................................................................................................................TGACACGTTGAGCTCGTA...................................................	18	1	1.00	1	1	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCC.......................................................	18	1	1.00	1	0	0	0	0	1	0
......................................................................................................................AAAACTTGACACGTTGAGCTCG.....................................................	22	1	1.00	1	1	0	0	0	0	0

droGri2

CA--------------------T----------------------------CC---GGG--TGTCTGCCACACTTACGAGTTCCACTATTCAAGTTTTGAG--CGTATTT-GAAATCAAAAACTTGACACGTTGAGCTCGTGTGTG-----------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.....................................................................................................................AAAAACTTGACACGTTGAGCTCG.....................................................	23	1	43.00	43	13	30
........................................................................................................................AACTTGACACGTTGAGCTCGT....................................................	21	1	12.00	12	6	6
........................................................................................................................AACTTGACACGTTGAGCTCGTT...................................................	22	1	5.00	5	1	4
.......................................................................................................................AAACTTGACACGTTGAGCTCGT....................................................	22	1	5.00	5	2	3
..............................................................................AGTTCCACTATTCAAGTTTTGA.............................................................................................	22	1	3.00	3	3	0
.....................................................................................................................AAAAACTTGACACGTTGAGCT.......................................................	21	1	2.00	2	0	2
..............................................................................AGTTCCACTATTCAAGTTTTG..............................................................................................	21	1	2.00	2	2	0
.....................................................................................................................AAAAACTTGACACGTTGAGCTCGT....................................................	24	1	2.00	2	1	1
......................................................................................................................AAAACTTGACACGTTGAGCTCG.....................................................	22	1	2.00	2	2	0
........................................................................................................................AACTTGACACGTTGAGCTCG.....................................................	20	1	2.00	2	2	0
........................................................................................................................AACTTGACACGTTGAGCT.......................................................	18	1	1.00	1	1	0
.....................................................................................................................AAAAACTTGACACGTTGAGC........................................................	20	1	1.00	1	1	0
.............................................................................GAGTTCCACTATTCAAGTTTT...............................................................................................	21	1	1.00	1	1	0
.........................................................................................................................ACTTGACACGTTGAGCTCGT....................................................	20	1	1.00	1	1	0
.....................................................................................................................AAAAACTTGACACGTTGAGCTC......................................................	22	1	1.00	1	1	0
.......................................................................................................................AAACTTGACACGTTGAGCTCG.....................................................	21	1	1.00	1	1	0

droAna3

TA--------------------TTTTTTTTGGAA----------------------AAT--ATTCTGTTTTACGTGCGAGTTCCACTAAGCAAGTTTTGAGAAT--TTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTCCGTGGGG-CAGATAA------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
........................................................................................................................AACTTGACACGTTGAGCTCGT....................................................	21	1	153.00	153	14	9	3	80	24	23
.............................................................................GAGTTCCACTAAGCAAGTTTT...............................................................................................	21	1	65.00	65	4	0	0	15	0	46
........................................................................................................................AACTTGACACGTTGAGCTCGTC...................................................	22	1	22.00	22	2	1	0	8	4	7
............................................................................CGAGTTCCACTAAGCAAGTTTT...............................................................................................	22	1	13.00	13	1	0	0	7	0	5
.............................................................................GAGTTCCACTAAGCAAGTTT................................................................................................	20	1	11.00	11	0	0	0	4	0	7
........................................................................................................................AACTTGACACGTTGAGCTCGTCT..................................................	23	1	8.00	8	1	0	0	6	0	1
........................................................................................................................AACTTGACACGTTGAGCTCGTT...................................................	22	1	6.00	6	0	1	1	1	2	1
........................................................................................................................AACTTGACACGTTGAGCTCG.....................................................	20	1	5.00	5	1	0	0	2	2	0
..............................................................................AGTTCCACTAAGCAAGTTTT...............................................................................................	20	1	3.00	3	0	0	0	3	0	0
.........................................................................................................................ACTTGACACGTTGAGCTCGT....................................................	20	1	3.00	3	3	0	0	0	0	0
.......................................................................................................................AAACTTGACACGTTGAGCTCGT....................................................	22	1	2.00	2	1	0	0	0	1	0
........................................................................................................................AACTTGACACGTTGAGCTCGC....................................................	21	1	2.00	2	0	1	0	1	0	0
.......................................................................................................................AAACTTGACACGTTGAGCTCGTT...................................................	23	1	1.00	1	0	0	0	1	0	0
.......................................................................................................................AAACTTGACACGTTGAG.........................................................	17	1	1.00	1	0	0	0	1	0	0
..........................................................................................................................CTTGACACGTTGAGCTCGTCT..................................................	21	1	1.00	1	0	0	0	0	1	0
......................................................................................................................AAAACTTGACACGTTGAGCTCG.....................................................	22	1	1.00	1	0	0	0	1	0	0
........................................................................................................................AACTTGACACGTTGAGCTC......................................................	19	1	1.00	1	0	0	0	1	0	0
............................................................................CGAGTTCCACTAAGCAAGTTT................................................................................................	21	1	1.00	1	1	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGTTT..................................................	23	1	1.00	1	0	0	0	1	0	0
.............................................................................GAGTTCCACTAAGCAAGTTTTG..............................................................................................	22	1	1.00	1	0	0	0	0	0	1
............................................................................CGAGTTCCACTAAGCAAGTTTG...............................................................................................	22	1	1.00	1	0	0	0	1	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGTCA..................................................	23	1	1.00	1	0	0	0	1	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGA....................................................	21	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................AAACTTGACACGTTGAGCTCG.....................................................	21	1	1.00	1	0	0	0	1	0	0

droBip1

TGTCTTGTAATTTT------------TTTTGGAA----------------------AAT--ATTCTGTTTTACGTGCGAGTTCCACTAAGCAAGTTTTGAGAAT--TTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTCCGTGGGG-CAG----------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TA--------------------AGT---------ACAA-TA-AGTGAAA-GTG---AAG--ACTCTGAGCTACGCGCGAGTTCCACTAAGCAAGTTTTGAGAAT--ATTTC-AATACAAAAACTTGACACGTTGAGCTCGTTTGTGGGGTCAGACAAA-----------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

C---------------------------------------------------------------CTGTTCTACGTGCGAGTTCCACTAGGCAAGTTTTGAGATCGTTTTTAAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGA-TGGACAACTC---------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GT--------------------------------------------AATCTCCCAAAAA--TCTCTGTCCTACGTACGAGTTCCACTAAGCAAGTTTTGAGATCGTT-TTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGA-TGGACAA------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CT-----------------------------------------GGGAATCCCC--GAAA--TCTCTGTCCTACGTACGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAATACAAAAACTTGACACGTTGAGCTCGTTTGTGGGA-CGG----------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

----------------------------------------------------------------CTGTGCCACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAATACTAAAACTTGACACGTTGAGCTCGTTTGTGGCT-TGGCC--------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CA--------------------T----------------------------CG---AAT--ACTCTGTCCTACGTGCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGG----------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

CT--------------------T----------------TCTGGGGAATCCCCCTGAAATCTCTCTGTTCTACGTGCGAGTTCCACTAAGCAAGTTTTGAGATCGTTTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGG----------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

AG--------------------TG----------GCAT-TC-GGTGAATCCCC---AAG--TCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGG----------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.............................................................................GAGTTCCACTAAGCAAGTTTT...............................................................................................	21	1	1843.00	1843	0	0	0	0	10	0	0	0	0	0	0	0	0	0	1	0	0	0	4	0	0	0	0	0	0	0	0	0	3	2	76	105	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22	0	0	0	0	0	0	0	0	0	0	44	0	0	83	5	14	1	0	0	1	217	1	0	0	1	0	0	0	0	0	0	0	0	0	0	16	10	0	2	0	4	8	20	0	41	2	28	35	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	115	111	0	83	0	0	32	118	2	83	5	79	0	112	0	0	0	0	0	0	107	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	28	3	0	0	0	9	7	0	4	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	23	50	24	43	0	0	6	1	0	0	0	0	0	0	4	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	2	0	1	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGT....................................................	21	1	1512.00	1512	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	8	6	10	9	1	1	0	1	0	0	0	0	0	1	1	0	1	1	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	12	3	0	5	0	4	3	4	0	6	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	2	3	0	0	42	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28	31	0	33	0	0	9	11	6	16	11	15	5	29	52	0	0	0	0	0	46	1	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	11	29	9	17	2	6	6	23	0	4	4	7	1	0	0	0	0	0	0	0	21	18	0	0	2	0	1	1	0	2	6	0	2	0	0	0	0	3	4	3	0	5	0	1	1	0	0	0	0	2	6	0	0	0	1	3	0	11	1	3	0	2	0	0	0	1	1	45	28	12	39	34	130	84	43	6	3	0	1	0	7	19	0	15	58	0	0	1	6	2	1	2	2	1	1	0	5	6	0	4	0	9	178	58	5	12	7	6	0	0	1	15	0	0
.............................................................................GAGTTCCACTAAGCAAGTTT................................................................................................	20	1	219.00	219	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	3	0	0	0	7	0	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14	13	0	6	0	0	4	9	0	11	1	11	0	6	2	0	0	0	0	0	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	7	0	0	0	0	0	11	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	4	9	22	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	34	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCG.....................................................	20	1	54.00	54	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	1	0	0	0	1	1	0	0	1	3	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	0	0	2	1	5	0	0	0	0	3	0	0	1	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGTT...................................................	22	1	49.00	49	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	5	4	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	2	0	0	0	0	5	2	0	1	0	0	0	0	0	1	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGTATC.................................................	24	1	38.00	38	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................AGTTCCACTAAGCAAGTTTT...............................................................................................	20	1	37.00	37	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	4	0	0	0	0	1	2	0	4	0	3	0	2	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGC....................................................	21	1	12.00	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0
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........................................................................................................................AACTTGACACGTTGAGCTCGTTT..................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGA....................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.............................................................................GAGTTCCACTAAGCAAGTTTG...............................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGTAT..................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGTTA..................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.............................................................................GAGTTCCACTAAGCAAGTTTTATC............................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................ACACGTTGAGCTCGTTCC.................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................GAGTTCCACTAAGCAAGTTTTGATC...........................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

AG--------------------TG----------GCGT-TC-GGGGAATCCCC---AAG--TCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGG----------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
........................................................................................................................AACTTGACACGTTGAGCTCGT....................................................	21	1	913.00	913	598	11	250	5	0	5	1	3	4	8	2	4	3	19	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGG....................................................	21	1	104.00	104	54	2	48	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCG.....................................................	20	1	58.00	58	39	3	13	0	0	2	0	0	0	0	0	0	0	1	0	0	0
.............................................................................GAGTTCCACTAAGCAAGTTTT...............................................................................................	21	1	51.00	51	2	0	0	1	1	46	0	0	0	0	0	1	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGC....................................................	21	1	36.00	36	26	1	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................GAGTTCCACTAAGCAAGTTT................................................................................................	20	1	33.00	33	1	0	0	0	0	32	0	0	0	0	0	0	0	0	0	0	0
.............................................................................GAGTTCCACTAAGCAAGT..................................................................................................	18	1	30.00	30	0	0	0	0	1	29	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................AAACTTGACACGTTGAGCTCG.....................................................	21	1	5.00	5	3	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.............................................................................GAGTTCCACTAAGCAAGTT.................................................................................................	19	1	4.00	4	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0
................................................................................................TTGAGATC--GTTTTAAAAACAAAAACT.....................................................................	26	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTC......................................................	19	1	3.00	3	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................AAAACTTGACACGTTGAGCTC......................................................	21	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGTT...................................................	22	1	2.00	2	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.......................................................................................................................AAACTTGACACGTTGAGCTCGT....................................................	22	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................AAAACTTGACACGTTGAGCTCG.....................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGTAA..................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.............................................................................GAGTTCCACTAAGCAAGTTTTC..............................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................TTTGAGATC--GTTTTAAAA..............................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................TTGAGATC--GTTTTAAAAACAA..........................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGTTT..................................................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................AAACTTGACACGTTGAGCTC......................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGTAAA.................................................	24	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

AG--------------------TG----------GCGT-TC-GAGGAATCCCC---AAG--TCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGG----------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
........................................................................................................................AACTTGACACGTTGAGCTCGT....................................................	21	1	114.00	114	11	23	35	45
.............................................................................GAGTTCCACTAAGCAAGTTTT...............................................................................................	21	1	85.00	85	0	2	0	83
.............................................................................GAGTTCCACTAAGCAAGTTT................................................................................................	20	1	33.00	33	0	1	0	32
..............................................................................AGTTCCACTAAGCAAGTTTT...............................................................................................	20	1	2.00	2	0	0	0	2
..................................................................................................GAGATC--GTTTTAAAAACAAA.........................................................................	20	1	2.00	2	0	0	2	0
.......................................................................................................................AAACTTGACACGTTGAGCTCGT....................................................	22	1	2.00	2	0	0	2	0
........................................................................................................................AACTTGACACGTTGAGCTCGTT...................................................	22	1	2.00	2	0	0	1	1
........................................................................................................................AACTTGACACGTTGAGCTCGTA...................................................	22	1	1.00	1	0	0	0	1
...........................................................................................................................TTGACACGTTGAGCTCGTTCGTGT----------------------------------------------	24	1	1.00	1	0	0	0	1
...........................................................................................................................TTGACACGTTGAGCTCGTTCGT................................................	22	1	1.00	1	0	0	0	1
............................................................................CGAGTTCCACTAAGCAAGTT.................................................................................................	20	1	1.00	1	0	0	0	1
..............................................................................AGTTCCACTAAGCAAGTTT................................................................................................	19	1	1.00	1	0	0	0	1
........................................................................................................................AACTTGACACGTTGAGCTCG.....................................................	20	1	1.00	1	0	0	1	0
.............................................................................GAGTTCCACTAAGCAAGT..................................................................................................	18	1	1.00	1	0	0	0	1

droYak3

----------------------------------------------------------------CTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTTGTGG----------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
........................................................................................................................AACTTGACACGTTGAGCTCGT....................................................	21	1	393.00	393	143	17	100	6	39	76	12	0	0	0	0
.............................................................................GAGTTCCACTAAGCAAGTTTT...............................................................................................	21	1	61.00	61	1	2	1	0	15	42	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGC....................................................	21	1	27.00	27	4	0	22	0	0	1	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGG....................................................	21	1	21.00	21	21	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCG.....................................................	20	1	19.00	19	9	1	8	0	1	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGTT...................................................	22	1	9.00	9	2	1	3	1	0	1	1	0	0	0	0
.............................................................................GAGTTCCACTAAGCAAGTTT................................................................................................	20	1	9.00	9	0	0	0	0	1	8	0	0	0	0	0
.......................................................................................................................AAACTTGACACGTTGAGCTCGT....................................................	22	1	7.00	7	3	0	2	0	1	1	0	0	0	0	0
.......................................................................................................................AAACTTGACACGTTGAGCTCG.....................................................	21	1	4.00	4	4	0	0	0	0	0	0	0	0	0	0
......................................................................................................................AAAACTTGACACGTTGAGCTCG.....................................................	22	1	4.00	4	4	0	0	0	0	0	0	0	0	0	0
................................................................................................TTGAGATC--GTTTTAAAAACAAAAACT.....................................................................	26	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................ACTTGACACGTTGAGCTCGT....................................................	20	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0
.......................................................................................................................AAACTTGACACGTTGAGCTCGC....................................................	22	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
................................................................................................TTGAGATC--GTTTTAAAAACAAA.........................................................................	22	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0
......................................................................................................................AAAACTTGACACGTTGAGCTC......................................................	21	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAG.........................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0
................................................................................................TTGAGATC--GTTTTAAAAACAAAAAC......................................................................	25	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
................................................................................................TTGAGATC--GTTTTAAAAACAA..........................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
............................................................................CGAGTTCCACTAAGCAAGTTTT...............................................................................................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
.............................................................................GAGTTCCACTAAGCAAGTTTTA..............................................................................................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
.............................................................................GAGTTCCACTAAGCAAGTTTTT..............................................................................................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
...............................................................................GTTCCACTAAGCAAGTTTT...............................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTC......................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
................................................................................................TTGAGATC--GTTTTAAAAACA...........................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGTTA..................................................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................AAACTTGACACGTTGAGCTCGTAAA.................................................	25	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGTTT..................................................	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................GAGATC--GTTTTAAAAACAAA.........................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.............................................................................GAGTTCCACTAAGCAAGTTTG...............................................................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0

droEre2

----------------------------------------------------------------CTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGG----------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
........................................................................................................................AACTTGACACGTTGAGCTCGT....................................................	21	1	299.00	299	27	10	26	5	82	149	0
.............................................................................GAGTTCCACTAAGCAAGTTTT...............................................................................................	21	1	217.00	217	6	0	9	0	5	197	0
.............................................................................GAGTTCCACTAAGCAAGTTT................................................................................................	20	1	44.00	44	0	0	3	0	1	40	0
........................................................................................................................AACTTGACACGTTGAGCTCG.....................................................	20	1	11.00	11	1	0	0	0	4	6	0
..............................................................................AGTTCCACTAAGCAAGTTTT...............................................................................................	20	1	8.00	8	0	0	2	0	0	6	0
........................................................................................................................AACTTGACACGTTGAGCTCGTT...................................................	22	1	7.00	7	1	0	2	0	2	2	0
........................................................................................................................AACTTGACACGTTGAGCTCGC....................................................	21	1	3.00	3	0	3	0	0	0	0	0
.......................................................................................................................AAACTTGACACGTTGAGCTCGT....................................................	22	1	3.00	3	0	0	0	0	1	2	0
................................................................................................TTGAGATC--GTTTTAAAAACAAAAACT.....................................................................	26	1	3.00	3	0	0	0	0	0	3	0
........................................................................................................................AACTTGACACGTTGAGCTCGTA...................................................	22	1	2.00	2	0	0	1	0	0	1	0
.............................................................................GAGTTCCACTAAGCAAGTTTTA..............................................................................................	22	1	2.00	2	0	0	1	0	0	1	0
.......................................................................................................................AAACTTGACACGTTGAGCTCG.....................................................	21	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................AAAACTTGACACGTTGAGCTCG.....................................................	22	1	1.00	1	0	0	0	0	0	1	0
......................................................................................................................AAAACTTGACACGTTGAGCTCGT....................................................	23	1	1.00	1	0	0	0	0	0	1	0
........................................................................................................................AACTTGACACGTTGAGCTCGTC...................................................	22	1	1.00	1	0	0	0	0	1	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGA....................................................	21	1	1.00	1	0	1	0	0	0	0	0
.............................................................................GAGTTCCACTAAGCAAGTTTTG..............................................................................................	22	1	1.00	1	0	0	1	0	0	0	0
.........................................................................................................................ACTTGACACGTTGAGCTCGT....................................................	20	1	1.00	1	1	0	0	0	0	0	0
................................................................................................TTGAGATC--GTTTTAAAAACAAA.........................................................................	22	1	1.00	1	0	0	0	0	0	1	0
.............................................................................GAGTTCCACTAAGCAAGTT.................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
.............................................................................GAGTTCCACTAAGCAAGTTTTT..............................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................GAGATC--GTTTTAAAAACAAA.........................................................................	20	1	1.00	1	0	0	0	0	0	1	0

dpe_84

scaffold_11:2701305-2701366 +

Known Ortholog

Canonical miRNA

intergenic

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-35.8	-35.3	-35.1