ID:

dpe_833

 Coordinate:

scaffold_159:54299-54449 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-11.3 -10.6 -10.5 -10.5

Flybase annnotation

exon [dper_GLEANR_1899:1]; CDS [Dper\GL17182-cds]; intron [Dper\GL17182-in]

No Repeatable elements found

mature
  1. scaffold_159:45090-45117 -
  2. dpe_833  scaffold_159:54378-54405 -
  3. scaffold_159:57748-57775 -
  4. scaffold_1069:1145-1172 +
  5. scaffold_56:10800-10827 -
  6. scaffold_132:40710-40737 +
  7. scaffold_146:24143-24170 +
  8. scaffold_311:16421-16448 -
star
  1. scaffold_159:45026-45050 -
  2. dpe_833  scaffold_159:54315-54339 -
  3. scaffold_159:57684-57708 -

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ACACGGAGGCCACATCAAATGAGCTAAGGGAGCAACTGCTGCAGCTTCAAGTAGCAGTCGAACAGCCAACAGCTCCAAACATTCAACATTTAGCTCAGATCATCATTCCAAAATTCAATAAATTTAATCCGCATCTTGGTTCGCACAACTGGAGCGCTCTTTAACTAGCACAATGTGGTGCGCGCCGACCACAAAATTTTGTGCAATCGAAGATCACATTACTCGCCCACCGTCTGACAACAAGTACGACG
**********************************************************************************************....................................((.....................((((.((................)).))))))****************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 M021
embryo
 V050
head
..............................................................................................TCAGATCATCATTCCAAAATTCAATAAA................................................................................................................................. 28 0 8 6.50 52 43 9 0
..............................................................................................TCAGATCATCATTCCAAAATTCAATA................................................................................................................................... 26 0 8 3.88 31 27 4 0
............................................................................................................................................TCGAACAACTGTAGCGTTCTT.......................................................................................... 21 3 4 2.50 10 9 0 1
.............................................................................................................................................CGAACAACTGTAGCGTTCTT.......................................................................................... 20 3 6 1.17 7 7 0 0
..............................................................................................TCAGATCATCATTCCAAAATTCAATAAAT................................................................................................................................ 29 0 7 1.00 7 7 0 0
............................................................................................................................TAATCCGCATCTTGGTTCGCACAACTG.................................................................................................... 27 0 1 1.00 1 1 0 0
..............................................................................................TCAGATCATCATTCCAAAATTCAA..................................................................................................................................... 24 0 9 0.89 8 8 0 0
.............................................................................................................................................CGAACAACTGTAGCGTTCTTT......................................................................................... 21 3 4 0.75 3 3 0 0
.......................................................................................................................................................................................................................ACATTACTCGCCCACCGTCTGACAACAAG....... 29 0 4 0.75 3 0 3 0
............................................................................................................................................TCGAACAACTGTAGCGTTCT........................................................................................... 20 3 7 0.71 5 5 0 0
..............................................................................................TCAGATCATCATTCCAAAATTCAATAA.................................................................................................................................. 27 0 8 0.63 5 5 0 0
..............................................................................................TCAGATCATCATTCCAAAATTCA...................................................................................................................................... 23 0 9 0.44 4 4 0 0
..............................................................................................TCAGATCATCATTCCAAAATTCAAT.................................................................................................................................... 25 0 9 0.44 4 3 1 0
..............................................................................................TCAGATCATCATTCCAAAATTC....................................................................................................................................... 22 0 9 0.33 3 1 2 0
................................................................................................................................................................TTAACTAGCACAATGTGGTGCGCGC.................................................................. 25 0 3 0.33 1 1 0 0
.................................................................................................................................................CAACTGGAGCGCTCTTTAACTT.................................................................................... 22 1 3 0.33 1 1 0 0
.......................................................................................................................................................................................................................ACATTACTCGCCCACCGTCTGACA............ 24 0 4 0.25 1 1 0 0
.......................................................................................................................................................................................................................ACATTACTCGCCCACCGTCTGACAACA......... 27 0 4 0.25 1 1 0 0
.....................................................GCAGTCGAACAGCCAACAGCTCCAAA............................................................................................................................................................................ 26 0 4 0.25 1 1 0 0
..............................................................................................TCAGATCAGCATTCCAAAATTCAATAAA................................................................................................................................. 28 1 8 0.25 2 2 0 0
.........................................................................................................................................................................................................TGCAATCGAAGATCACATTACTCGCC........................ 26 0 4 0.25 1 1 0 0
...............................................................................................CAGATCATCATTCCAAAATTCAATA................................................................................................................................... 25 0 8 0.25 2 2 0 0
.............................................................................................................................................CGAACAACTGTAGCGTTCTTTA........................................................................................ 22 3 4 0.25 1 1 0 0
...............................................CAAGTAGCAGTCGAACAGCCAACAGC.................................................................................................................................................................................. 26 0 4 0.25 1 1 0 0
........................................................TTCGAACAGCCAAGAGCT................................................................................................................................................................................. 18 2 7 0.14 1 1 0 0
..............................................................................................TCAGATCAACATTCCAAAATTCAATAAAT................................................................................................................................ 29 1 7 0.14 1 1 0 0
...........................................................................................................................................................................................................................TACTCGCCCACCGTCTGACAACAAGTA..... 27 0 7 0.14 1 1 0 0
...........................................................................................................................................................................................................................TACTCGCCCACCGTCCGACAACAAG....... 25 1 7 0.14 1 0 1 0
...........................................................................................................................................................................................................................TACTCGCCCACCGTCTGACAACAAG....... 25 0 7 0.14 1 1 0 0
.............................................................................................CTCAGATCATCATTCCAAAATTCAATA................................................................................................................................... 27 0 8 0.13 1 1 0 0
..............................................................................................TCAGATCACCATTCCAAAATTCAATAAA................................................................................................................................. 28 1 8 0.13 1 1 0 0
...............................................................................................CAGATCATCATTCCAAAATTCAATAAAA................................................................................................................................ 28 1 8 0.13 1 1 0 0
..............................................................................................TCCGATCATCATTCCAAAATTCAATAAA................................................................................................................................. 28 1 8 0.13 1 0 1 0
..............................................................................................TCAGATCAGCATTCCAAAATTCAATA................................................................................................................................... 26 1 8 0.13 1 1 0 0
..............................................................................................TCAGATCAGCATTCCAAAATTCAATAA.................................................................................................................................. 27 1 8 0.13 1 1 0 0
..............................................................................................TCAGATCATCATTCCAAAATTCAATTG.................................................................................................................................. 27 2 9 0.11 1 1 0 0
...............................................................................................CAGATCATCATTCCAAAATTCAA..................................................................................................................................... 23 0 9 0.11 1 1 0 0
..............................................................................................ACAGATCATCATTCCAAAATTCAAT.................................................................................................................................... 25 1 9 0.11 1 1 0 0
..............................................................................................GCAGATCATCATTCCAAAA.......................................................................................................................................... 19 1 10 0.10 1 1 0 0
..............................................................................................TCAGATCATCATTCCAAAAA......................................................................................................................................... 20 1 11 0.09 1 1 0 0
............................................................................................................................................TCGAACAACTGTAGCGTTC............................................................................................ 19 3 16 0.06 1 1 0 0
..............................................................................................................................................GAACAACTGTAGCGTTCTT.......................................................................................... 19 3 20 0.05 1 1 0 0
...............................................................................................................................................AACAACTGTAGCGTTCTT.......................................................................................... 18 3 20 0.05 1 1 0 0

Anti-sense strand reads

TGTGCCTCCGGTGTAGTTTACTCGATTCCCTCGTTGACGACGTCGAAGTTCATCGTCAGCTTGTCGGTTGTCGAGGTTTGTAAGTTGTAAATCGAGTCTAGTAGTAAGGTTTTAAGTTATTTAAATTAGGCGTAGAACCAAGCGTGTTGACCTCGCGAGAAATTGATCGTGTTACACCACGCGCGGCTGGTGTTTTAAAACACGTTAGCTTCTAGTGTAATGAGCGGGTGGCAGACTGTTGTTCATGCTGC
******************************************************************....................................((.....................((((.((................)).))))))********************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 V111
male body		 V057
head
 M021
embryo
.............................................................................................................................................GCTTGTTGACATCGCAAGA........................................................................................... 19 3 18 1.78 32 30 1 1 0
...............................................................................GTAAGTTGTAAATCGAGTCTAGTAG................................................................................................................................................... 25 0 4 0.75 3 1 2 0 0
............................................................................................................................................AGCTTGTTGACATCGCAAGA........................................................................................... 20 3 7 0.71 5 5 0 0 0
.............................................................................................................................................GCTTGTTGACATCGCAAGAA.......................................................................................... 20 3 6 0.50 3 3 0 0 0
..............GGTTGACTCGATTCCCGCG.......................................................................................................................................................................................................................... 19 3 20 0.35 7 7 0 0 0
.................................................................................................................................................GTTGACCTCGCGAGAAATTGATCGT................................................................................. 25 0 3 0.33 1 1 0 0 0
..............................................................................................................................................CTTGTTGACATCGCAAGAA.......................................................................................... 19 3 20 0.30 6 5 1 0 0
............................................................................TTTGTAAGTTGTAAATCGAGTCTAGTAG................................................................................................................................................... 28 0 4 0.25 1 0 1 0 0
...............................................................................GTAAGTTGTAAAGCGAGTCTAGTAG................................................................................................................................................... 25 1 4 0.25 1 1 0 0 0
...........................................................................................................................................................................................TGCTGTTTTAAAACACGTTAGCTTCT...................................... 26 1 4 0.25 1 1 0 0 0
..............................................................................TGTAAGTTGTAAATCGAGTCTAGTAG................................................................................................................................................... 26 0 4 0.25 1 0 1 0 0
.............................................................................................................................................................................................................TAGCTTCTAGTGTAATGAGCGGGT...................... 24 0 4 0.25 1 1 0 0 0
................................................................................TAAGTTGTAAATCGATTCTAGTAG................................................................................................................................................... 24 1 4 0.25 1 1 0 0 0
...............................................................................................................................................................................................................GCTTCTAGTGTAATGAGCGGGT...................... 22 0 4 0.25 1 1 0 0 0
...............................................................................GTAAGTTGTAAATCGAGTCTAGTA.................................................................................................................................................... 24 0 4 0.25 1 1 0 0 0
........................................................................................................................................................................................................CACGTTAGCTTCTAGTGTAATGAGC.......................... 25 0 4 0.25 1 1 0 0 0
.........................................................................................................................................................................................................ACGTTAGCTTCTAGTGTAATGAGC.......................... 24 0 4 0.25 1 1 0 0 0
............................................................................................................................................AGCTTGTTGACATCGCAAG............................................................................................ 19 3 16 0.25 4 4 0 0 0
.............................................................................TTGTAAGTTGTAAATCGAGTCTAGTA.................................................................................................................................................... 26 0 4 0.25 1 1 0 0 0
.................................................................................AAGTTGTAAATCGAGTCTAGTAG................................................................................................................................................... 23 0 4 0.25 1 1 0 0 0
......................................................GTCAGCTTGTCGGTTGTCGAGGT.............................................................................................................................................................................. 23 0 4 0.25 1 0 1 0 0
............................................................................................................................................AGCTTGTTGACATCGCAAGAA.......................................................................................... 21 3 4 0.25 1 1 0 0 0
...............................................................................................................................................TTGTTGACATCGCAAGAA.......................................................................................... 18 3 20 0.20 4 3 0 1 0
...............GTTGACTCGATTCCCGCG.......................................................................................................................................................................................................................... 18 2 6 0.17 1 1 0 0 0
................................................................................................................................................................................................................................CGGGTGGCAGACTGTTGTTCATG.... 23 0 7 0.14 1 1 0 0 0
.................................................................................................................................................................................................................................GGGTGGCAGACTGTTGTTCATG.... 22 0 7 0.14 1 1 0 0 0
..................................................................................AGTTGTAAATCGAGTCTAGTAG................................................................................................................................................... 22 0 9 0.11 1 0 1 0 0
...........................................................................................TCGAGTCTAGTAGTAAGGTTTTA......................................................................................................................................... 23 0 10 0.10 1 0 0 0 1
.........................................................................................................................................................CGCTGGAAATTGAGCGTGT............................................................................... 19 3 14 0.07 1 0 0 1 0
.........................TTCCTTCGTTGCCGACGTCGG............................................................................................................................................................................................................. 21 3 20 0.05 1 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_159:54249-54499 - dpe_833 ACACGGAGGCCACAT------------CAAATGAGCTAAGGGAGCAACTGCTGCAGCTTCAAGTAGCAGTCGAACAGCCAACAG--------CTCCAAACATTCAACATTTAGCTCAGATC-----ATCATTCCAAAATTCAATAAATTTAATCCGCATCT-TGGTTCGCACAACTGGAGCGCTC-TTTAACTAGCACAATGTGGTGCGCGCCGACCACAAAAT-----------------------------------TTTGTGCAATCGAAGATCACATTACTCGCCCACCGTCTGACAACAAGTACG-ACG
dp5 Unknown_group_42:13723-13976 + ACC---------CAC------------CAAATGAGTTAAGGGTGCAACTGCAGCAGCTTCAATTAGCAGCCG--CAGCCAACAG--------CTCCAAACTCTCAACATTTAGCTCAGATC-----ATCATTCCAAAATTCAATAAATTGAATCCGCATCTTTGGTTCGCACAACTGGAGCGCCTCATTAACTAGCACAATGTGGTGCACGACGACCACAAATTTGACCAAAAAA-----------------------TTTCGTGCAATCGAAGATCTCATTACTCGCCCACCGTCTGACAACAAGTACG-ACG
droWil2 scf2_1100000011850:633-917 + AAAGGG------AAC------------TAGACGATCTCAGAAGCCAATTGGAGCTTCTGCATGCAACTGGCA--ACGCCACCACAAATAATGCGGCAACCGGCCAACGT---GCTCCCATG-----CGCTTGCCACGATTCGCAAGAAACAACCCCCATTTGTGGTTCGCTCAAATCGAACGCTTATTTCGCTTGCACAACATTGACGACGACACAGACAAATTTGATCTGATCACAGTGCATATAGACGAGGAGATCATCATTGCTGTAGAAGATTTGGTTTTACGACCACCTGCGACTGGCAAATATC-TCG
droVir3 scaffold_13036:1056784-1057069 - CTCAAGATAGCGAACCTAATGAAGAACTTCACGAATTAAAGGTGCAAGTGCAGCAACTTCAATCGTCGTTTGCACGGCTACTAGAAGG-AAATGAAAATTAAC---CAT---GCTCACAGTTGAAAAACGCGCCACAGATCAACAAATGTAATCCTCAAC--TGGTTTGCACAATCTGAGCGCCTGTTTCTCTTGCACCTGACGATCG-------------AC-----TTGGTGTCGTTACACTTAAAGAAGGATGTCGCACTCACCATCGAGGATCTCATCACATATCCACCGGTGCATAACAAATACG-GCA
droKik1 scf7180000301607:19434-19473 + CA------------------------------------------------------------------------------------------------------------------------------------GAGGTTACCC---------------------------------------------------------------------------------------------------------------------------------------------CGACAGAGCGAAGCGAGCAACTGCC-GCA
droFic1 scf7180000453788:56425-56605 + CC------------------------------------------------------------------------------------------------------------------------------------AAAATTTGCACATAGCAACCCTCAGCTATGGTTTGCGCAAGTGGAGCGCTCATTCCGACTACACCACATCGTGGACGACACCGACAAGTTCGATCTTGTTACTCTTCACCTGGAGGAGGATGTGGTTTTGGCTGTGGAAGACTTAGTCATTCGACCACCTGACGAAAACAAGTATG-TAA
droEle1 scf7180000488816:7701-7881 - CC------------------------------------------------------------------------------------------------------------------------------------AAAGTTTAGGAGCAGCAATCCTCAACTATGGTTCGCCCAGGTGGAACGTTCATTTCGTTTGCACGGCGTTAACAATGACGACGACAAATTTGATCACATCACCGTTAACTTGGATCCGGAGGTCGTTTTAGCCGTCGAGGATTTAGTCACGCATCCTCCAGTCGCAAACAAGTTTG-ACA
droRho1 scf7180000773056:5612-5805 + ACG-------------------------------------GCTCCAACGGCACGAGCAACAATTC--------------------------------------------------------------GACTCACGAAATTCACAAGCAACAATCCGCAATTGTGGTTCGCCCAAGTGGAACGATCATTTCGTCTGCACGGCGTCAACAACGATGACAACAAATTTGACTACATCACCGTAAATTTGGATCCAGACGTTGTTGTGA--------------------CACCCGCCAGCGGCTAACAAGTATG-ATA
droBia1 scf7180000301696:30418-30598 + CC------------------------------------------------------------------------------------------------------------------------------------AAAATTTACAAGCAACAACCCACAATTGTGGTTCGCCCAAGTGGAACGTTCATTTCGTCTGCACGGCGTCAACAACGATGACGACAAATTTGACTACATCACCGTAAATTTGGATCCAAACGTTGTTTTGACTGTGGAGGATTTAGTCACTCAACCGCCAGCGGCCAACAAGAATG-ATA
droTak1 scf7180000414658:11344-11524 + CC------------------------------------------------------------------------------------------------------------------------------------AAAATTCGCACATAGCAACCCTCAACTATGGTTTGCGCAAGTGGAGCGGTCATATAGATTGCACCAGATCATCGACGACACCGACAAGTTCTACCTTGTGACTCTTCACCTGGAGGAGGGTGTAGTTCTGGCAGTGGAAGACTTAGTCATTCAACCACCCATCGAAAACAAGTACG-TAG
droEug1 scf7180000409914:10513-10584 - TC----------------------------------------------------------AAGCAGCAGCT---------------------------------------------------------------------------------------------GTGCAGCCAAGAGCACCACAGATTTCTCTTCTAGCACGTTCC-------------------------------------------------------------------------------------------GAAAAGTATCATACCAA
droYak3 v2_chrUn_6631:25785-25958 + CC------------------------------------------------------------------------------------------------------------------------------------AAAATTCACACACAACAACCCGCACCTGTGGTTTGCTCAAGTGGAGCGATCATTCCGTTTGCACCACATTGTCGACGACACTGACAAT-------TGGTGACACTCCATTTGGAAGAAGATGTGGTTTTGGCTGTGGAGGATTTGGTCACTCGTCCACCGGCAGACAACAAATACG-CAG
droEre2 scaffold_4732:162548-162713 + T----------------------------------------------------------------------------------------------------------------------------------TCCCAAATTCACACACAGCAACCCACAACTGTGATTTGCTGAAGTGGAGCGATCATTTCGTTTGCACCACATTGTCGACGACAATG--------------GTGACACGGCATTTTGA---ATATGTGATTTTGGTTGTGGATGGTTTGGTCACTCGTCCATCGGCAGATAACAAGTAAG-CAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
ACACGGAGGCCACAT------------CAAATGAGCTAAGGGAGCAACTGCTGCAGCTTCAAGTAGCAGTCGAACAGCCAACAG--------CTCCAAACATTCAACATTTAGCTCAGATC-----ATCATTCCAAAATTCAATAAATTTAATCCGCATCT-TGGTTCGCACAACTGGAGCGCTC-TTTAACTAGCACAATGTGGTGCGCGCCGACCACAAAAT-----------------------------------TTTGTGCAATCGAAGATCACATTACTCGCCCACCGTCTGACAACAAGTACG-ACGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................................................................................TCAGATC-----ATCATTCCAAAATTCAATAAA.......................................................................................................................................................................2886.50529430000
..................................................................................................................TCAGATC-----ATCATTCCAAAATTCAATA.........................................................................................................................................................................2683.88314270000
..................................................................................................................TCAGATC-----ATCATTCCAAAATTCAATAAAT......................................................................................................................................................................2971.007070000
.....................................................................................................................................................TAATCCGCATCT-TGGTTCGCACAACTG.........................................................................................................................................2711.001010000
..................................................................................................................TCAGATC-----ATCATTCCAAAATTCAA...........................................................................................................................................................................2490.898080000
.....................................................................................................................................................................................................................................................................................ACATTACTCGCCCACCGTCTGACAACAAG........2940.753300000
..................................................................................................................TCAGATC-----ATCATTCCAAAATTCAATAA........................................................................................................................................................................2780.635050000
..................................................................................................................TCAGATC-----ATCATTCCAAAATTCA............................................................................................................................................................................2390.444040000
..................................................................................................................TCAGATC-----ATCATTCCAAAATTCAAT..........................................................................................................................................................................2590.444130000
..................................................................................................................TCAGATC-----ATCATTCCAAAATTC.............................................................................................................................................................................2290.333210000
...........................................................................................................................................................................................TTAACTAGCACAATGTGGTGCGCGC......................................................................................................2530.331010000
...........................................................................................................................................................................CAACTGGAGCGCTC-TTTAACTT........................................................................................................................2230.331010000
.....................................................................................................................................................................................................................................................................................ACATTACTCGCCCACCGTCTGACA.............2440.251010000
.....................................................................................................................................................................................................................................................................................ACATTACTCGCCCACCGTCTGACAACA..........2740.251010000
.................................................................GCAGTCGAACAGCCAACAG--------CTCCAAA.......................................................................................................................................................................................................................2640.251010000
.......................................................................................................................................................................................................................................................................TGCAATCGAAGATCACATTACTCGCC.........................2640.251010000
...................................................................................................................CAGATC-----ATCATTCCAAAATTCAATA.........................................................................................................................................................................2580.252020000
...........................................................CAAGTAGCAGTCGAACAGCCAACAG--------C.............................................................................................................................................................................................................................2640.251010000
.........................................................................................................................................................................................................................................................................................TACTCGCCCACCGTCTGACAACAAGTA......2770.141010000
.........................................................................................................................................................................................................................................................................................TACTCGCCCACCGTCTGACAACAAG........2570.141010000
.................................................................................................................CTCAGATC-----ATCATTCCAAAATTCAATA.........................................................................................................................................................................2780.131010000
...................................................................................................................CAGATC-----ATCATTCCAAAATTCAATAAAA......................................................................................................................................................................2880.131010000
..................................................................................................................TCAGATC-----ATCATTCCAAAATTCAATTG........................................................................................................................................................................2790.111010000
...................................................................................................................CAGATC-----ATCATTCCAAAATTCAA...........................................................................................................................................................................2390.111010000
..................................................................................................................TCAGATC-----ATCATTCCAAAAA...............................................................................................................................................................................20110.091010000
dp5
ACC---------CAC------------CAAATGAGTTAAGGGTGCAACTGCAGCAGCTTCAATTAGCAGCCG--CAGCCAACAG--------CTCCAAACTCTCAACATTTAGCTCAGATC-----ATCATTCCAAAATTCAATAAATTGAATCCGCATCTTTGGTTCGCACAACTGGAGCGCCTCATTAACTAGCACAATGTGGTGCACGACGACCACAAATTTGACCAAAAAA-----------------------TTTCGTGCAATCGAAGATCTCATTACTCGCCCACCGTCTGACAACAAGTACG-ACGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................................................................TCAGATC-----ATCATTCCAAAATTCAATA.........................................................................................................................................................................2626.001201110000000
..................................................................................................................TCAGATC-----ATCATTCCAAAATTCAATAAA.......................................................................................................................................................................2825.501101100000000
..................................................................................................................TCAGATC-----ATCATTCCAAAATTCAA...........................................................................................................................................................................2433.0090900000000
..................................................................................................................TCAGATC-----ATCATTCCAAAATTCAAT..........................................................................................................................................................................2532.3370610000000
............................................................................................................................................................................................TAACTAGCACAATGTGGTGCACGACGA...................................................................................................2712.0020200000000
..................................................................................................................................................................TGGTTCGCACAACTGGAG......................................................................................................................................1811.0010100000000
.....................................................................................................................................................................................................................................................................................TCATTACTCGCCCACCGTCTG................2111.0010100000000
....................................................................................................TCTCAACATTTAGCTCAGATC-----ATCAT.......................................................................................................................................................................................2611.0010100000000
............................................................................................................................................................................................................................................................................TCGAAGATCTCATTACTCGCCCACCGTC..................2811.0010100000000
..................................................................................................................................................................TGGTTCGCACAACTGGAGCGCCT.................................................................................................................................2311.0010100000000
.............................................................................................................................................................................................................................................................................CGAAGATCTCATTACTCGCCCACCGTC..................2711.0010100000000
....................................................................................................TCTCAACATTTAGCTCAGATC-----ATCA........................................................................................................................................................................................2511.0010100000000
.............................................................................................................TTAGCTCAGATC-----ATCATTCCAAAAT...............................................................................................................................................................................2521.0020100100000
........................................................................................................................................................TCCGCATCTTTGGTTCGCACAACTGGAG......................................................................................................................................2811.0010100000000
................................................................................................................................................................................................................................TGACCAAAAAA-----------------------TTTCGTGCAATCGAAGA.......................................2811.0010100000000
.....................................................................................................................................................................................................................................................................................TCATTACTCGCCCACCGTCTGACAACAAG........2911.0010100000000
.....................................................................................................................................................................................................................................................................................TCATTACTCGCCCACCGTCTGA...............2211.0010100000000
.........................................................................................................................................................................................................................................................................................TACTCGCCCACCGTCTGACAACAAG........2530.6720200000000
...................................................................................................................CAGATC-----ATCATTCCAAAATTCAATAAA.......................................................................................................................................................................2720.5010100000000
.......................................................................................................................................................................................................................................................................TGCAATCGAAGATCTCATTACTCGCC.........................2640.5020200000000
.............................................................................................................TTAGCTCAGATC-----ATCATTCCAAAATTG.............................................................................................................................................................................2720.5010000000100
..........................................................................CAGCCAACAG--------CTCCAAACTCTCAAC...............................................................................................................................................................................................................2520.5010100000000
.......................................................................................................................TC-----ATCATTCCAAAATTCAA...........................................................................................................................................................................1940.5020000000200
.............................................................................................................TTAGCTCAGATC-----ATCATTCCAAAATT..............................................................................................................................................................................2620.5010100000000
.......................................................................................................................................................................................................................................................................TGCAATCGAAGATCTCATTACTCGCCC........................2740.5020110000000
...................................................................................................................CAGATC-----ATCATTCCAAAATTCAATAAAT......................................................................................................................................................................2820.5010010000000
...................................................................................................................CAGATC-----ATCATTCCAAAATTCAATA.........................................................................................................................................................................2520.5010100000000
..............................................................................................................TAGCTCAGATC-----ATCATTCCAAAATT..............................................................................................................................................................................2530.3310100000000
.........................................................................................................................................................................................................................................................................................TACTCGCCCACCGTCTGACAACAAGTAC.....2830.3310100000000
.........................................................................................................................................................................................................................................................................................TACTCGCCCACCGTCTGACAACAAGTA......2730.3310100000000
........................................................................................................................................................................................................................................................................................TTACTCGCCCACCGTCTGACAACAAG........2630.3310000000100
..............................................................................................................................................................................................................................................................................GAAGATCTCATTACTCGCCC........................2040.2510100000000
...............................................................................................CAAACTCTCAACATTTAGCTC......................................................................................................................................................................................................2140.2510010000000
droWil2
AAAGGG------AAC------------TAGACGATCTCAGAAGCCAATTGGAGCTTCTGCATGCAACTGGCA--ACGCCACCACAAATAATGCGGCAACCGGCCAACGT---GCTCCCATG-----CGCTTGCCACGATTCGCAAGAAACAACCCCCATTTGTGGTTCGCTCAAATCGAACGCTTATTTCGCTTGCACAACATTGACGACGACACAGACAAATTTGATCTGATCACAGTGCATATAGACGAGGAGATCATCATTGCTGTAGAAGATTTGGTTTTACGACCACCTGCGACTGGCAAATATC-TCGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................................................................................................................................TTCGCTTGCACAACATTGACGACG.......................................................................................................2461.33808000
...........................................................................................................................................................................................................................................................................................TACGACCACCTGCGACTGGCAAATATC-T..2821.00202000
..........................................................................................TGCGGCAACCGGCCAACGT---GCTCCC....................................................................................................................................................................................................2511.00101000
.......................................................................................TAATGCGGCAACCGGCCAACGT---GCTCCA....................................................................................................................................................................................................2811.00101000
............AAC------------TAGACGATCTCAGAAGCCAAT..........................................................................................................................................................................................................................................................................2470.57404000
...........................................................................................................................................................................................TTCGCTTGCACAACATTGACGACGACA....................................................................................................2760.50303000
..............................................................................................................................................................................................................................................................................................GACCACCTGCGACTGGCAAATATC-...2420.50101000
...........................................................................................................................................................................................TTCGCTTGCACAACATTGACGACGA......................................................................................................2560.50303000
........................................................................................................................................................................................................................................TCACAGTGCATATAGACGAGGAGATCA.......................................................2770.43301011
............................................................................................................................................................................................................................................AGTGCATATAGACGAGGAGATCAT......................................................2470.43302010
........................................................................................................................................................................................................................................TCACAGTGCATATAGACGAGGAGA..........................................................24120.42503020
................................................TGGAGCTTCTGCATGCAACTGGCA--AC..............................................................................................................................................................................................................................................2650.40200020
...........................TAGACGATCTCAGAAGCCAATTGGAGCT...................................................................................................................................................................................................................................................................2880.38302010
.............................GACGATCTCAGAAGCCAATTGGAG.....................................................................................................................................................................................................................................................................2480.38303000
....................................................................................................................................................................................................................................................................CATTGCTGTAGAAGATTTGGTTTT..............................2460.33202000
..............................................................................................................................................................................................................................................TGCATATAGACGAGGAGATCATCAT...................................................2570.29201010
.......................................................................................................................................................................................................ACATTGACGACGACACAGACAAATT..........................................................................................2570.29201010
....................................................................................................................................................................................................ACAACATTGACGACGACACAGA................................................................................................2270.29202000
..................................TCTCAGAAGCCAATTGGAGCT...................................................................................................................................................................................................................................................................2180.25200110
.............................GACGATCTCAGAAGCCAATTGGAGC....................................................................................................................................................................................................................................................................2580.25201010
..............................ACGATCTCAGAAGCCAATTGGAGC....................................................................................................................................................................................................................................................................2480.25202000
....................................................................................................................................................................................................................................................................CATTGCTGTAGAAGATTTGGTTT...............................2380.25200020
...............................................................................ACCACAAATAATGCGGCAACCGG....................................................................................................................................................................................................................2380.25202000
......................................................TTCTGCATGCAACTGGCA--ACGCCACCA.......................................................................................................................................................................................................................................2750.20101000
.......................................................TCTGCATGCAACTGGCA--ACGCCACCACA.....................................................................................................................................................................................................................................2850.20101000
.......................................................TCTGCATGCAACTGGCA--ACGCCA..........................................................................................................................................................................................................................................2350.20101000
..............................................................................................................................................CAAGAAACAACCCCCATTTGTGG.....................................................................................................................................................23100.20202000
...................................................................................................................................................................................................................................TCTGATCACAGTGCATATAGACGAGG.............................................................26120.17202000
...........................................................................................................................................................................................TTCGCTTGCACAACATTGACGACGACAC...................................................................................................2860.17101000
....................................................................................................................................................................................................................................................................CATTGCTGTAGAAGATTTGGTTTTACG...........................2760.17101000
.......................................................................................................................................................................................................................................................................TGCTGTAGAAGATTTGGTTTTACGACA........................2760.17101000
......................................................................................................................................................................................................................................................................TTGCTGTAGAAGATTTGGTTTTA.............................2360.17101000
.......................................................................................................................................................................................................................................................................TGCTGTAGAAGATTTGGTTTTACGACCA.......................2860.17101000
.................................................................................................................................................................................................................................................ATATAGACGAGGAGATCATCAT...................................................2270.14101000
........................................................................................................................................................................................................................................TCACAGTGCATATAGACGAGGAGATCAT......................................................2870.14101000
........................................................................................................................................................................................................CATTGACGACGACACAGACAAATTTGA.......................................................................................2770.14101000
.................................................................................CACAAATAATGCGGCAACCGGCCAACG..............................................................................................................................................................................................................2770.14101000
............................................................................................................................................................................................................................................................GAGATCATCATTGCTGTAGAAGAT......................................2470.14101000
.....G------AAC------------TAGACGATCTCAGAAGCCA............................................................................................................................................................................................................................................................................2370.14101000
................................................................................CCACAAATAATGCGGCAACCGGCCAACG..............................................................................................................................................................................................................2870.14101000
............AAC------------TAGACGATCTCAGAAGCCAA...........................................................................................................................................................................................................................................................................2370.14101000
....................................................................................................................................................................................................................................................TAGACGAGGAGATCATCATTGCTG..............................................2470.14101000
............AAC------------TAGACGATCTCAGAAGCC.............................................................................................................................................................................................................................................................................2170.14101000
.......................................................................................................................................................................................................ACATTGACGACGACACAGACAAAT...........................................................................................2470.14101000
............................................................................................................................................................................................................................................................GAGATCATCATTGCTGTAGAAGATT.....................................2570.14101000
...........................................................................................................................................................................................................................................CAGTGCATATAGACGAGGAGATCATCA....................................................2770.14100010
.................................................................................................................................................................................................TGCACAACATTGACGACG.......................................................................................................1870.14101000
..........................................................................................................................................................................................................................................ACAGTGCATATAGACGAGGAGATCAT......................................................2670.14100010
...............................................................................ACCACAAATAATGCGGCAACCGGCCAACG..............................................................................................................................................................................................................2970.14101000
..................................................................................................................................................................................................................................................TATAGACGAGGAGATCATCATTGCTGT.............................................2770.14100010
..........................................................................................................................................................................................................................................ACAGTGCATATAGACGAGGAGATCA.......................................................2570.14101000
............................................................................................................................................................................................................................................AGTGCATATAGACGAGGAGATCATCAT...................................................2770.14100100
.........................................................................................................................................................................................................ATTGACGACGACACAGACAAATTTGA.......................................................................................2670.14100010
....................................................................................................................................................................................................................................................TAGACGAGGAGATCATCATTGCTGT.............................................2570.14101000
..............................................................................................................................................CAAGAAACAACCCCCATTTGTGGTTCG.................................................................................................................................................2770.14101000
..............................................................................................................................................................................................GCTTGCACAACATTGACGACGACAC...................................................................................................2570.14101000
..............................ACGATCTCAGAAGCCAATTGGAG.....................................................................................................................................................................................................................................................................2380.13101000
...........................TAGACGATCTCAGAAGCCAATTGGAGC....................................................................................................................................................................................................................................................................2780.13100010
.............................................................................................................................................................................................................ACGACGACACAGACAAATTTGATC.....................................................................................2480.13101000
................................................................................CCACAAATAATGCGGCAACCG.....................................................................................................................................................................................................................2180.13101000
.....................................................................................................................CATG-----CGCTTGCCACGATTCGCAA.........................................................................................................................................................................2380.13101000
..........................................................................................................................................................................................................TTGACGACGACACAGACAAATTTGATC.....................................................................................2780.13101000
.............................GACGATCTCAGAAGCCAATTGG.......................................................................................................................................................................................................................................................................2280.13101000
...........................................................................CGCCACCACAAATAATGCGGCAACCGGC...................................................................................................................................................................................................................2880.13101000
..........................................................................................................................................................................................................TTGACGACGACACAGACAAATTTGATCT....................................................................................2880.13101000
....................................................................................................................................................................................................................................................................CATTGCTGTAGAAGATTTGGTT................................2280.13101000
...............................................................................ACCACAAATAATGCGGCAACCGGC...................................................................................................................................................................................................................2480.13101000
......................................................................................................................................ACGATTCGCAAGAAACAACCCCCA............................................................................................................................................................2490.11101000
.........................................................................................................................................ATTCGCAAGAAACAACCCCCATT..........................................................................................................................................................2390.11101000
.............................................................................................................................................GCAAGAAACAACCCCCATTTGTG......................................................................................................................................................23100.10101000
................................................................................................................................................................................................................................TGATCTGATCACAGTGCATATAGACGAG..............................................................28110.09101000
....................................................................................................................................................................................................................................................................CATTGCTGTAGAAGATTTGGT.................................21110.09100100
.........................................................................................................................................................................CTCAAATCGAACGCTTATTTCGCTTG.......................................................................................................................26120.08101000
........................................................................................................................................................................................................................................TCACAGTGCATATAGACGAGGA............................................................22120.08101000
...................................................................................................................................................................................................................................TCTGATCACAGTGCATATAGACGAGGA............................................................27120.08101000
.....................................................................................................................................................................................................................................TGATCACAGTGCATATAGACGAGGAGA..........................................................27120.08100010
.................................................................................................................................................................................................................................GATCTGATCACAGTGCATATAGACG................................................................25130.08100010
.........................................................................................................................................................................................................................ACAAATTTGATCTGATCACAGTG..........................................................................23130.08101000
...........................................................................................................................................................................................................................................CAGTGCATATAGACGAGGAGA..........................................................21130.08101000
...................................................................................................................................................................................................................................TCTGATCACAGTGCATATAGACG................................................................23130.08101000
.................................................................................................................................................................................................................................GATCTGATCACAGTGCATATA....................................................................21130.08100010
droVir3
CTCAAGATAGCGAACCTAATGAAGAACTTCACGAATTAAAGGTGCAAGTGCAGCAACTTCAATCGTCGTTTGCACGGCTACTAGAAGG-AAATGAAAATTAAC---CAT---GCTCACAGTTGAAAAACGCGCCACAGATCAACAAATGTAATCCTCAAC--TGGTTTGCACAATCTGAGCGCCTGTTTCTCTTGCACCTGACGATCG-------------AC-----TTGGTGTCGTTACACTTAAAGAAGGATGTCGCACTCACCATCGAGGATCTCATCACATATCCACCGGTGCATAACAAATACG-GCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droKik1
CA------------------------------------------------------------------------------------------------------------------------------------GAGGTTACCC---------------------------------------------------------------------------------------------------------------------------------------------CGACAGAGCGAAGCGAGCAACTGCC-GCASizeHit CountTotal NormTotal
No Reads
droFic1
CC------------------------------------------------------------------------------------------------------------------------------------AAAATTTGCACATAGCAACCCTCAGCTATGGTTTGCGCAAGTGGAGCGCTCATTCCGACTACACCACATCGTGGACGACACCGACAAGTTCGATCTTGTTACTCTTCACCTGGAGGAGGATGTGGTTTTGGCTGTGGAAGACTTAGTCATTCGACCACCTGACGAAAACAAGTATG-TAASizeHit CountTotal NormTotal
No Reads
droEle1
CC------------------------------------------------------------------------------------------------------------------------------------AAAGTTTAGGAGCAGCAATCCTCAACTATGGTTCGCCCAGGTGGAACGTTCATTTCGTTTGCACGGCGTTAACAATGACGACGACAAATTTGATCACATCACCGTTAACTTGGATCCGGAGGTCGTTTTAGCCGTCGAGGATTTAGTCACGCATCCTCCAGTCGCAAACAAGTTTG-ACASizeHit CountTotal NormTotal
No Reads
droRho1
ACG-------------------------------------GCTCCAACGGCACGAGCAACAATTC--------------------------------------------------------------GACTCACGAAATTCACAAGCAACAATCCGCAATTGTGGTTCGCCCAAGTGGAACGATCATTTCGTCTGCACGGCGTCAACAACGATGACAACAAATTTGACTACATCACCGTAAATTTGGATCCAGACGTTGTTGTGA--------------------CACCCGCCAGCGGCTAACAAGTATG-ATASizeHit CountTotal NormTotal
No Reads
droBia1
CC------------------------------------------------------------------------------------------------------------------------------------AAAATTTACAAGCAACAACCCACAATTGTGGTTCGCCCAAGTGGAACGTTCATTTCGTCTGCACGGCGTCAACAACGATGACGACAAATTTGACTACATCACCGTAAATTTGGATCCAAACGTTGTTTTGACTGTGGAGGATTTAGTCACTCAACCGCCAGCGGCCAACAAGAATG-ATASizeHit CountTotal NormTotal
No Reads
droTak1
CC------------------------------------------------------------------------------------------------------------------------------------AAAATTCGCACATAGCAACCCTCAACTATGGTTTGCGCAAGTGGAGCGGTCATATAGATTGCACCAGATCATCGACGACACCGACAAGTTCTACCTTGTGACTCTTCACCTGGAGGAGGGTGTAGTTCTGGCAGTGGAAGACTTAGTCATTCAACCACCCATCGAAAACAAGTACG-TAGSizeHit CountTotal NormTotal
No Reads
droEug1
TC----------------------------------------------------------AAGCAGCAGCT---------------------------------------------------------------------------------------------GTGCAGCCAAGAGCACCACAGATTTCTCTTCTAGCACGTTCC-------------------------------------------------------------------------------------------GAAAAGTATCATACCAASizeHit CountTotal NormTotal
No Reads
droYak3
CC------------------------------------------------------------------------------------------------------------------------------------AAAATTCACACACAACAACCCGCACCTGTGGTTTGCTCAAGTGGAGCGATCATTCCGTTTGCACCACATTGTCGACGACACTGACAAT-------TGGTGACACTCCATTTGGAAGAAGATGTGGTTTTGGCTGTGGAGGATTTGGTCACTCGTCCACCGGCAGACAACAAATACG-CAGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................................................................................................................................................TCCGTTTGCACCACATTGTCGACGACACT..................................................................................................2982.7522010000000021
..............................................................................................................................................................................................................................................TCCATTTGGAAGAAGATGTGGTTTTGGC................................................2811.00101000000000
CC------------------------------------------------------------------------------------------------------------------------------------AAAATTCACACACAACAACCCGCA............................................................................................................................................................2641.00404000000000
.................................................................................................................................................................................................TGCACCACATTGTCGACGACACTGA................................................................................................25100.90901000000008
CC------------------------------------------------------------------------------------------------------------------------------------AAAATTCACACACAACAACCCG..............................................................................................................................................................2440.75303000000000
...........................................................................................................................................................................................TCCGTTTGCACCACATTGTCGACGACAC...................................................................................................28100.70706100000000
...........................................................................................................................................................................................TCCGTTTGCACCACATTGTCGA.........................................................................................................22100.50505000000000
....................................................................................................................................................................................................................................................................................TTGGTCACTCGTCCACCGGCAGAC..............2480.50404000000000
.....................................................................................................................................................................................................................................................................TTGGCTGTGGAGGATTTGGTCACTCG...........................2660.33202000000000
...........................................................................................................................................................................................TCCGTTTGCACCACATTGTCGAC........................................................................................................23100.30311000010000
....................................................................................................................................................................................................................................................................................TTGGTCACTCGTCCACCGGCAG................22110.27303000000000
...............................................................................................................................................................................................................................................................................................TCCACCGGCAGACAACAAATACG-CA.2540.25101000000000
...............................................................................................................................................................................................................................................................................................TCCACCGGCAGACAACAAATACG-...2340.25101000000000
CC------------------------------------------------------------------------------------------------------------------------------------AAAATTCACACACAACAACCCGC.............................................................................................................................................................2540.25101000000000
..................................................................................................................................................................................................................................................TTTGGAAGAAGATGTGGTTTTGGC................................................2480.25200200000000
CC------------------------------------------------------------------------------------------------------------------------------------AAAATTCACACACAACAACCC...............................................................................................................................................................2340.25101000000000
...........................................................................................................................................................................................TCCGTTTGCACCACATTGTCGACG.......................................................................................................24100.20202000000000
...........................................................................................................................................................................................TCCGTTTGCACCACATTGTCGACGA......................................................................................................25100.20202000000000
................................................................................................................................................................TGTGGTTTGCTCAAGTGGAGCGATCA................................................................................................................................2650.20100010000000
......................................................................................................................................................................................................................................................................TGGCTGTGGAGGATTTGGTCACTC............................2470.14100100000000
....................................................................................................................................................................................................................................................................................TTGGTCACTCGTCCACCGGCAGACA.............2580.13101000000000
..................................................................................................................................................................................................................................................TTTGGAAGAAGATGTGGTTTTGGCTG..............................................2680.13101000000000
............................................................................................................................................................................................................................................................................TGGAGGATTTGGTCACTCGTCCACC.....................2590.11100100000000
.....................................................................................................................................................................................GATCATTCCGTTTGCACCACATTG.............................................................................................................2490.11101000000000
..........................................................................................................................................................................................................................................................................TGTGGAGGATTTGGTCACTCGTCC........................2490.11101000000000
.......................................................................................................................................................................................TCATTCCGTTTGCACCACATTGTCGAC........................................................................................................2790.11101000000000
.................................................................................................................................................................................................TGCACCACATTGTCGACGACACTGAC...............................................................................................26100.10101000000000
..................................................................................................................................................................................................GCACCACATTGTCGACGACACTGA................................................................................................24100.10101000000000
....................................................................................................................................................................................................................................................................................TTGGTCACTCGTCCACCGGCAGA...............23110.09101000000000
................................................................................................................................................................................................TTGCACCACATTGTCGACGACACT..................................................................................................24110.09101000000000
...............................................................................................................................................................................................TTTGCACCACATTGTCGACGACACT..................................................................................................25110.09101000000000
....................................................................................................................................................................................................................................................................................TTGGTCACTCGTCCACCGGC..................20120.08101000000000
....................................................................................................................................................................................................................................................................................TTGGTCACTCGTCCACCG....................18120.08101000000000
............................................................................................................................................................................................CCGTTTGCACCACATTGTCGACT.......................................................................................................23120.08101000000000
.............................................................................................................................................................................................CGTTTGCACCACATTGTCGACGACAC...................................................................................................26130.08101000000000
droEre2
T----------------------------------------------------------------------------------------------------------------------------------TCCCAAATTCACACACAGCAACCCACAACTGTGATTTGCTGAAGTGGAGCGATCATTTCGTTTGCACCACATTGTCGACGACAATG--------------GTGACACGGCATTTTGA---ATATGTGATTTTGGTTGTGGATGGTTTGGTCACTCGTCCATCGGCAGATAACAAGTAAG-CAGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 06/08/2015 at 03:19 PM