ID:

dpe_82

 Coordinate:

scaffold_13:197065-197125 +

 Confidence:

Known Ortholog

 Class:

Testes-restricted

 Genomic Locale:

intergenic

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-22.3 -22.0 -22.0

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

ACCAATCAATTAGTGGCCAAATACATGTATATTTCAAATGTTTTTAGTTCCTTAGATCGCCAGGTATTATATGTTATATTTAAAAACCATGTTATACCGGTCATCTGAAGAATTATTTACCACAGATAACAACAAAATCCTTTCCTTTACAGGGGTCTTCA

***********************************....((...((((((.((((((.(((.(((((.(((((..............))))).)))))))).)))))).))))))...)).....************************************ 		Read size # Mismatch Hit Count Total Norm Total V057

head

 V111

male body		 V050

head

 M042

female body

 M021

embryo

 V042

embryo
.........................................................................................TGTTATACCGGTCATCTGAAG................................................... 21 0 1 165.00 165 63 32 43 16 10 1
.........................................................................................TGTTATACCGGTCATCTGAAGA.................................................. 22 0 1 100.00 100 28 29 15 12 14 2
.........................................................................................TGTTATACCGGTCATCTGA..................................................... 19 0 1 29.00 29 17 0 10 2 0 0
.........................................................................................TGTTATACCGGTCATCTGAA.................................................... 20 0 1 20.00 20 11 3 6 0 0 0
.........................................................................................TGTTATACCGGTCATCTGAAGAA................................................. 23 0 1 19.00 19 0 18 0 1 0 0
..................................................CTTAGATCGCCAGGTATTATATG........................................................................................ 23 0 1 8.00 8 2 6 0 0 0 0
..................................................CTTAGATCGCCAGGTATTATATGTTA..................................................................................... 26 0 1 5.00 5 0 5 0 0 0 0
.........................................................................................TGTTATACCGGTCATCTGAAA................................................... 21 1 1 3.00 3 2 0 1 0 0 0
...................................................TTAGATCGCCAGGTATTATATGT....................................................................................... 23 0 1 3.00 3 0 3 0 0 0 0
..................................................CTTAGATCGCCAGGTATTATAT......................................................................................... 22 0 1 3.00 3 2 1 0 0 0 0
.........................................................................................TGTTATACCGGTCATCTGAAGAAA................................................ 24 1 1 2.00 2 0 1 0 1 0 0
.........................................................................................TGTTATACCGGTCACCTGAAG................................................... 21 1 1 2.00 2 1 1 0 0 0 0
..................................................CTTAGATCGCCAGGTATTATATGT....................................................................................... 24 0 1 2.00 2 0 2 0 0 0 0
.........................................................................................TGTTATACCGGTCATCTGAAGAT................................................. 23 1 1 2.00 2 0 1 1 0 0 0
.........................................................................................TGTTATACCGGTCATCTGACG................................................... 21 1 1 2.00 2 1 0 1 0 0 0
.........................................................................................TGTTATACCGGTCATCTGAAGG.................................................. 22 1 1 2.00 2 0 0 0 0 2 0
.........................................................................................TGTTATACCGGTCATCTG...................................................... 18 0 1 2.00 2 2 0 0 0 0 0
.........................................................................................TGTTATACTGGTCATCTGAAG................................................... 21 1 1 2.00 2 1 0 1 0 0 0
..........................................................................................GTTATACCGGTCATCTGAAGA.................................................. 21 0 1 2.00 2 0 0 0 2 0 0
.........................................................................................TGTTATACCGGTAATCTGCAC................................................... 21 3 1 1.00 1 1 0 0 0 0 0
.........................................................................................TGTTATACCGGTCATCTCACG................................................... 21 2 1 1.00 1 1 0 0 0 0 0
.........................................................................................TGTTATACCGGCCATCTGA..................................................... 19 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................TGTTATACCGGCCATCTGAAG................................................... 21 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................TGTTATACCGGTCATCTGAAGACA................................................ 24 2 1 1.00 1 0 1 0 0 0 0
.........................................................................................TGTTATACCGGTCATCTGAAC................................................... 21 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................TGTTATACCGGTCGTCTGAAG................................................... 21 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................TGTTATACCGGGCATCTGA..................................................... 19 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................TGTTAGACCGGTCATCTGAAG................................................... 21 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................TGTTATACCGGTCAACTCAAG................................................... 21 2 1 1.00 1 1 0 0 0 0 0
.........................................................................................TGCTATACCGGTCATCTGAAG................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...................................................TTAGATCGCCAGGTATTATATG........................................................................................ 22 0 1 1.00 1 0 1 0 0 0 0
.........................................................................................TGGTATACCGGTCATCTGAAG................................................... 21 1 1 1.00 1 0 0 1 0 0 0
.........................................................................................TGTTATACCGGTCATTTTAAGT.................................................. 22 3 1 1.00 1 0 0 1 0 0 0
.........................................................................................TGGTATACCGGTCATCTGACG................................................... 21 2 1 1.00 1 1 0 0 0 0 0
..................................................CTTAGATCGCCAGGTATTATATGA....................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0
.........................................................................................TGATATACCGGTCATCTGAAGA.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................TGTTATACCGGTCATCTGAAGCA................................................. 23 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................TGTTATACCGGTCATCCGAAGA.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
..................................................CTTAGATCGCCGGGTATTATATG........................................................................................ 23 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................TGTTATACCGGTCATCTGT..................................................... 19 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................TGTTATACCGGTCCTCTGAAG................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTTATACCGGTCATCTGAAG................................................... 20 1 1 1.00 1 0 0 0 1 0 0
.........................................................................................TGTGATACCGGGAATCTGAAG................................................... 21 3 1 1.00 1 1 0 0 0 0 0
.........................................................................................TGTTATACCGGTCATCTGAT.................................................... 20 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................TGTTATACCGGCCTTCTGAA.................................................... 20 2 1 1.00 1 1 0 0 0 0 0
.........................................................................................TGTTATACCGGTCATCTGAAGT.................................................. 22 1 1 1.00 1 0 1 0 0 0 0
.........................................................................................TGTTATACCGGTCATCTGAAAAA................................................. 23 1 1 1.00 1 0 1 0 0 0 0
.........................................................................................TGTTATACCGGTCATCTGCA.................................................... 20 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................TGTTATACCGGTCATCTGCAG................................................... 21 1 1 1.00 1 0 0 1 0 0 0
.........................................................................................TGTTAGAGCGGTCATCTGATG................................................... 21 3 1 1.00 1 1 0 0 0 0 0
.........................................................................................TGTTATACCTGTCATCTGACG................................................... 21 2 1 1.00 1 1 0 0 0 0 0
.........................................................................................TGTTAGAGCGGTCATCTGAAG................................................... 21 2 1 1.00 1 1 0 0 0 0 0
.........................................................................................TGTTATACCGGGCATCTGAAG................................................... 21 1 1 1.00 1 0 0 1 0 0 0
.........................................................................................TGTGATACCGGTCATCTCTAGA.................................................. 22 3 1 1.00 1 1 0 0 0 0 0
..................................................CTTAGATCGCCAGGTATTAT........................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................TGTTATACCGGTCATCTGAGG................................................... 21 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................TGTTATACCGGGCATCTGAGG................................................... 21 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................TTATACCGGTCATCTGAAGA.................................................. 20 0 1 1.00 1 0 1 0 0 0 0
.........................................................................................TGTTATACCGGTCATCTGGAGA.................................................. 22 1 1 1.00 1 0 0 0 0 1 0
.........................................................................................TGTTATACCGGTCATCTTAAGA.................................................. 22 1 1 1.00 1 0 1 0 0 0 0
.........................................................................................TGGTATACCGGTCATCTGA..................................................... 19 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................TGGTATACCGGTCATCTGAAGA.................................................. 22 1 1 1.00 1 0 0 1 0 0 0
.........................................................................................TGTTATACGGGTCATCTGAAGA.................................................. 22 1 1 1.00 1 0 0 0 1 0 0
..........................................................................................GTTATACCGGTCATCTGAAG................................................... 20 0 1 1.00 1 0 0 0 1 0 0
.........................................................................................TGTTATACAGGTCATCTGAAG................................................... 21 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................TGATATACCGTTCATCTGA..................................................... 19 2 2 0.50 1 1 0 0 0 0 0
.........................................................................................AGTTATACCTGTCATCTGA..................................................... 19 2 2 0.50 1 1 0 0 0 0 0
.........................................................................................TGGTATACCGGTCATCTGAGGG.................................................. 22 3 2 0.50 1 1 0 0 0 0 0
.........................................................................................TGGTATACCGGCCATCTGA..................................................... 19 2 2 0.50 1 1 0 0 0 0 0
.........................................................................................TGGTATACTGGTCATCTGAAA................................................... 21 3 6 0.17 1 1 0 0 0 0 0
..........................................TTCAGTTGTTTAGATCGCC.................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

TGGTTAGTTAATCACCGGTTTATGTACATATAAAGTTTACAAAAATCAAGGAATCTAGCGGTCCATAATATACAATATAAATTTTTGGTACAATATGGCCAGTAGACTTCTTAATAAATGGTGTCTATTGTTGTTTTAGGAAAGGAAATGTCCCCAGAAGT

************************************....((...((((((.((((((.(((.(((((.(((((..............))))).)))))))).)))))).))))))...)).....*********************************** 		Read size # Mismatch Hit Count Total Norm Total V042

embryo

 V057

head
.....................................................................................TGGTACAATATGTCGAGT.......................................................... 18 2 3 0.33 1 1 0
..............................................................................................ATGGACAGTAGACTGCTA................................................. 18 3 20 0.05 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droPer2 scaffold_13:197015-197175 + dpe_82 confident ACCAATCAATTAGTGGCCAAATACATGTATATTTCAAATGTTTTTAGTTCCTTAGATCGCCAGGTATTATATGTTATATTTAAAAACCATGTTATACCGGTCATCTGAAGAATTATTTACCACAGATAACAACAAAATCCTTTCCTTTACAGGGGTCTTCA
dp5 XL_group1e:8367322-8367466 - dps-mir-2540 Known_mirbase ACCAATCAATTAGTGGCCGAATACATGTATATTTCAAATGTTTTTAGTTCTTCAGATCGCCAGGTATTATATGTAATACTTAAAAACCGTGTTATACCGGTCATCTGAAGAATTATTTACCACAGAAAGCAACAAAATCCGTGCC----------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
ACCAATCAATTAGTGGCCAAATACATGTATATTTCAAATGTTTTTAGTTCCTTAGATCGCCAGGTATTATATGTTATATTTAAAAACCATGTTATACCGGTCATCTGAAGAATTATTTACCACAGATAACAACAAAATCCTTTCCTTTACAGGGGTCTTCASizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
.........................................................................................TGTTATACCGGTCATCTGAAG...................................................211165.0016510161436332
.........................................................................................TGTTATACCGGTCATCTGAAGA..................................................221100.0010014122152829
.........................................................................................TGTTATACCGGTCATCTGA.....................................................19129.002902010170
.........................................................................................TGTTATACCGGTCATCTGAA....................................................20120.00200006113
.........................................................................................TGTTATACCGGTCATCTGAAGAA.................................................23119.00190100018
..................................................CTTAGATCGCCAGGTATTATATG........................................................................................2318.008000026
..................................................CTTAGATCGCCAGGTATTATATGTTA.....................................................................................2615.005000005
.........................................................................................TGTTATACCGGTCATCTGAAA...................................................2113.003000120
...................................................TTAGATCGCCAGGTATTATATGT.......................................................................................2313.003000003
..................................................CTTAGATCGCCAGGTATTATAT.........................................................................................2213.003000021
.........................................................................................TGTTATACCGGTCATCTGAAGAAA................................................2412.002010001
..................................................CTTAGATCGCCAGGTATTATATGT.......................................................................................2412.002000002
.........................................................................................TGTTATACCGGTCATCTGAAGAT.................................................2312.002000101
.........................................................................................TGTTATACCGGTCATCTGAAGG..................................................2212.002200000
.........................................................................................TGTTATACCGGTCATCTG......................................................1812.002000020
..........................................................................................GTTATACCGGTCATCTGAAGA..................................................2112.002020000
.........................................................................................TGTTATACCGGTCATCTGAAGACA................................................2411.001000001
.........................................................................................TGTTATACCGGTCATCTGAAC...................................................2111.001000010
...................................................TTAGATCGCCAGGTATTATATG........................................................................................2211.001000001
..................................................CTTAGATCGCCAGGTATTATATGA.......................................................................................2411.001000001
.........................................................................................TGTTATACCGGTCATCTGT.....................................................1911.001000010
.........................................................................................TGTTATACCGGTCATCTGAT....................................................2011.001000010
.........................................................................................TGTTATACCGGTCATCTGAAGT..................................................2211.001000001
..................................................CTTAGATCGCCAGGTATTAT...........................................................................................2011.001000010
...........................................................................................TTATACCGGTCATCTGAAGA..................................................2011.001000001
..........................................................................................GTTATACCGGTCATCTGAAG...................................................2011.001010000
dp5
ACCAATCAATTAGTGGCCGAATACATGTATATTTCAAATGTTTTTAGTTCTTCAGATCGCCAGGTATTATATGTAATACTTAAAAACCGTGTTATACCGGTCATCTGAAGAATTATTTACCACAGAAAGCAACAAAATCCGTGCC----------------SizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
.........................................................................................TGTTATACCGGTCATCTGAAGA..................................................2214062.004062219613523209629373722
.........................................................................................TGTTATACCGGTCATCTGAAG...................................................2111662.00166237102331122514205
.........................................................................................TGTTATACCGGTCATCTGAAGAA.................................................231146.001463100002201200
..................................................TTCAGATCGCCAGGTATTATATG........................................................................................231145.001453100011101272
..................................................TTCAGATCGCCAGGTATTATAT.........................................................................................22173.0073000211150540
.........................................................................................TGTTATACCGGTCATCTGAA....................................................20167.006703000030610
.........................................................................................TGTTATACCGGTCATCTGAAGAAA................................................24164.006425000070500
.........................................................................................TGTTATACCGGTCATCTGA.....................................................19134.0034080001110140
..........................................................................................GTTATACCGGTCATCTGAAGA..................................................21134.003402110010290
..................................................TTCAGATCGCCAGGTATTATATGTAA.....................................................................................26133.003300000020310
.........................................................................................TGTTATACCGGTCATCTGAAGT..................................................22128.002801001000260
.........................................................................................TGTTATACCGGTCATCTGAAA...................................................21124.002400000020220
..................................................TTCAGATCGCCAGGTATTATATT........................................................................................23114.00140000003290
..................................................TTCAGATCGCCAGGTATTATATC........................................................................................23114.001400000010130
..................................................TTCAGATCGCCAGGTATTATATGT.......................................................................................24113.001300000000130
..................................................TTCAGATCGCCAGGTATTATATGA.......................................................................................24112.001200000000120
..................................................TTCAGATCGCCAGGTATTATA..........................................................................................21110.00100001012060
..........................................................................................GTTATACCGGTCATCTGAAG...................................................2016.0060310000020
..................................................TTCAGATCGCCAGGTATTATATGTAAA....................................................................................2716.0060000000060
.........................................................................................TGTTATACCGGTCATCTGAAGAT.................................................2315.0050000001040
.........................................................................................TGTTATACCGGTCATCTGAAGTC.................................................2315.0050000001040
..................................................TTCAGATCGCCAGGTATTATAA.........................................................................................2214.0040000000040
.........................................................................................TGTTATACCGGTCATCTGAAGAAG................................................2414.0040000000040
.........................................................................................TGTTATACCGGTCATCTGAAGC..................................................2214.0040000001030
..................................................TTCAGATCGCCAGGTATTATATGTA......................................................................................2514.0040000000040
.........................................................................................TGTTATACCGGTCATCTGAAGCC.................................................2313.0030000000030
...................................................TCAGATCGCCAGGTATTATATGTAA.....................................................................................2513.0030000001020
........................................................................................GTGTTATACCGGTCATCTGAAGA..................................................2313.0030000000030
..................................................TTCAGATCGCCAGGTATTATATCC.......................................................................................2413.0030000000030
..................................................TTCAGATCGCCAGGTATTATATGTC......................................................................................2512.0020000000020
...........................................................................................TTATACCGGTCATCTGAAGA..................................................2012.0020100000010
..........................................................................................GTTATACCGGTCATCTGAA....................................................1912.0020000000020
..........................................................................................GTTATACCGGTCATCTGA.....................................................1812.0020200000000
..................................................TTCAGATCGCCAGGTATTATATGTCC.....................................................................................2612.0020000000020
.........................................................................................TGTTATACCGGTCATCTGAAGAG.................................................2312.0020000000020
.........................................................................................TGTTATACCGGTCATCTGAAGAAT................................................2412.0020000000020
..................................................TTCAGATCGCCAGGTATTATATGTCCA....................................................................................2711.0010000000010
..........................................................................................GTTATACCGGTCATCTGAAGC..................................................2111.0010000000010
.........................................................................................TGTTATACCGGTCATCTGAAGTTA................................................2411.0010000000010
.........................................................................................TGTTATACCGGTCATCTGAAGAAAA...............................................2511.0010000000010
..................................................TTCAGATCGCCAGGTATTATATA........................................................................................2311.0010000000010
.........................................................................................TGTTATACCGGTCATCTGAG....................................................2011.0010000000010
.........................................................................................TGTTATACCGGTCAT.........................................................1511.0010000000010
.........................................................................................TGTTATACCGGTCATCTGAAGG..................................................2211.0010000001000
..........................................................................................GTTATACCGGTCATCTGAAGAA.................................................2211.0010100000000
..................................................TTCAGATCGCCAGGTATTATATGTCCC....................................................................................2711.0010000000010
........................................................................................GTGTTATACCGGTCATCTGAAG...................................................2211.0010100000000
..........................................................................................GTTATACCGGTCATCTGAAGAC.................................................2211.0010000001000
...........................................................................................TTATACCGGTCATCTGAAG...................................................1911.0010000000010
.........................................................................................TGTTATACCGGTCATCTGAAGAGA................................................2411.0010000000010
.........................................................................................TGTTATACCGGTCATCTGAAGCT.................................................2311.0010000000010
..................................................TTCAGATCGCCAGGTATTAT...........................................................................................2011.0010000001000
..................................................TTCAGATCGCCAGGTATTATATGC.......................................................................................2411.0010000000010
.........................................................................................TGTTATACCGGTCATCTGT.....................................................1911.0010001000000
.........................................................................................TGTTATACCGGTCATCTGAAGTCC................................................2411.0010000001000
.........................................................................................TGTTATACCGGTCATCTG......................................................1811.0011000000000

Generated: 10/20/2015 at 06:48 PM