ID:

dpe_810

 Coordinate:

scaffold_150:15336-15486 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dper_GLEANR_18501:1]; CDS [Dper\GL16677-cds]; intron [Dper\GL16677-in]

No Repeatable elements found

Sense Strand Reads

------------------------------------##############---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TGATTGTTGCCATCAAAATCTCAGTTGTTTCAAAAAATGTCGGAGAAAAGGTATGTCAAGAAATGAATAACGGAGGTGTTTCACACTGGCGCTTCCATCGGGCTTAAATTTTTGAAACGTGCACAAACGTACATTTCCCCTTCAGGTGTCGCCTTTGGTAATTACATTAACATGTAGTTAATATGTAGAACATGTGCAGTTGATGTGTAGTTACAATGTAAGGAAATGAATTTAGTGGAAACTGTTTTTGT
**************************************************.....(((((((.........(((((((((.......)))))))))............)))))))(((.((((((....(((((....((...((((...))))..))(((((((((....)))))))))..))))).....)))))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 V050
head
 V111
male body		 V057
head
................................................................................................................................................................................................TGTGCAGTTGATGTGTAGTTA...................................... 21 0 1 1.00 1 0 0 1 0
..........CATCACAATCTCAGTTCTTTCC........................................................................................................................................................................................................................... 22 3 1 1.00 1 0 1 0 0
.....................................................TGTCAACAAAGGAATAACGGATG............................................................................................................................................................................... 23 3 1 1.00 1 1 0 0 0
..........CATCACAACCTCAGTTCTTTC............................................................................................................................................................................................................................ 21 3 4 0.25 1 0 0 0 1
..........CATCAAATTCTGAGTTCTTTC............................................................................................................................................................................................................................ 21 3 8 0.13 1 0 0 0 1
..........CATCTCAATCTCAGTTCTTTC............................................................................................................................................................................................................................ 21 3 9 0.11 1 0 0 0 1

Anti-sense strand reads

ACTAACAACGGTAGTTTTAGAGTCAACAAAGTTTTTTACAGCCTCTTTTCCATACAGTTCTTTACTTATTGCCTCCACAAAGTGTGACCGCGAAGGTAGCCCGAATTTAAAAACTTTGCACGTGTTTGCATGTAAAGGGGAAGTCCACAGCGGAAACCATTAATGTAATTGTACATCAATTATACATCTTGTACACGTCAACTACACATCAATGTTACATTCCTTTACTTAAATCACCTTTGACAAAAACA
**************************************************.....(((((((.........(((((((((.......)))))))))............)))))))(((.((((((....(((((....((...((((...))))..))(((((((((....)))))))))..))))).....)))))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total V042
embryo
..........................................CTGTTATCCATCCAGTTCTT............................................................................................................................................................................................. 20 3 3 0.33 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_150:15286-15536 - dpe_810 TGATTGTTGCCATCAAAATCTCAGTTGTTTCAAAAAATGTCGGAGAAAAGGTATGTCAAGAAATGAATAACGGAGGTGTTTCACACTGGCGCTTCCATCGGGCTTAAATTTTTGAAACGTGCACAAACGTACATTTCCCCTTCAGGTGTCGCCTTTGGTAATTACATTAACATGTAGTTAATATGTAGAACATGTGCAGTTGATGTGTAGTTACAATGTAAGGAAATGAATTTAGTGGAAACTGTTTTTGT
dp5 Unknown_group_537:16624-16874 - TGATTGTTGTCATCAAAATCTCAGTTGTTTCAAAAAATGTCGGAAAAAAGGTATGTCAAGAAATGAATAACGGAGGTGTTTCACACTGGCGCTTCCATCGGGCTTAAATTTTTGAAACGTGCACAAACGTACATTTCCCCTTCAGGTGTCGCCTTTGGTAATTACATTAACATGTAGTTAATATGTAGAACATGTGCAGTTGATGTGTAGTTACAATGTAAGGAAATGAATTTAGTGGAAATTTTTTTTGT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
TGATTGTTGCCATCAAAATCTCAGTTGTTTCAAAAAATGTCGGAGAAAAGGTATGTCAAGAAATGAATAACGGAGGTGTTTCACACTGGCGCTTCCATCGGGCTTAAATTTTTGAAACGTGCACAAACGTACATTTCCCCTTCAGGTGTCGCCTTTGGTAATTACATTAACATGTAGTTAATATGTAGAACATGTGCAGTTGATGTGTAGTTACAATGTAAGGAAATGAATTTAGTGGAAACTGTTTTTGTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
................................................................................................................................................................................................TGTGCAGTTGATGTGTAGTTA......................................2111.001000001
dp5
TGATTGTTGTCATCAAAATCTCAGTTGTTTCAAAAAATGTCGGAAAAAAGGTATGTCAAGAAATGAATAACGGAGGTGTTTCACACTGGCGCTTCCATCGGGCTTAAATTTTTGAAACGTGCACAAACGTACATTTCCCCTTCAGGTGTCGCCTTTGGTAATTACATTAACATGTAGTTAATATGTAGAACATGTGCAGTTGATGTGTAGTTACAATGTAAGGAAATGAATTTAGTGGAAATTTTTTTTGTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads

Generated: 06/08/2015 at 03:13 PM