ID:

dpe_800

 Coordinate:

scaffold_15:1578897-1579047 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-20.5 -20.0 -19.9

Flybase annnotation

CDS [Dper\GL16578-cds]; exon [dper_GLEANR_18225:2]; intron [Dper\GL16578-in]

No Repeatable elements found

mature
  1. scaffold_25:465236-465256 +
  2. scaffold_25:465753-465773 +
  3. scaffold_25:480953-480973 +
  4. scaffold_25:481152-481172 +
  5. scaffold_1:7020439-7020459 +
  6. scaffold_1:7021912-7021932 +
  7. scaffold_1:7022231-7022251 +
  8. scaffold_5:5148439-5148459 +
  9. scaffold_13:2138467-2138487 +
  10. scaffold_13:2138786-2138806 +
  11. scaffold_15:199123-199143 +
  12. scaffold_15:199760-199780 +
  13. dpe_800  scaffold_15:1578897-1578917 +
  14. scaffold_29:476512-476532 +
  15. scaffold_32:543164-543184 +
  16. scaffold_32:543483-543503 +
  17. scaffold_32:543802-543822 +
  18. scaffold_32:547255-547275 +
  19. scaffold_8518:971-991 +
  20. scaffold_5925:1617-1637 +
  21. scaffold_8:8431-8451 +
  22. scaffold_8:10359-10379 +
  23. scaffold_29:474914-474934 +
  24. scaffold_29:475232-475252 +
  25. scaffold_29:475551-475571 +
  26. scaffold_29:476190-476210 +
star
  1. scaffold_8:3707194-3707214 +
  2. dpe_800  scaffold_15:1578968-1578988 +
  3. scaffold_23:1503394-1503414 +
  4. scaffold_45:19032-19052 +
  5. scaffold_10792:89-109 +
  6. scaffold_10792:453-473 +
  7. scaffold_10792:635-655 +
  8. scaffold_3787:2069-2089 +
  9. scaffold_2198:1251-1271 +
  10. scaffold_2198:2624-2644 +
  11. scaffold_2198:2988-3008 +
  12. scaffold_5945:275-295 +
  13. scaffold_5945:640-660 +
  14. scaffold_5945:822-842 +
  15. scaffold_5945:1368-1388 +
  16. scaffold_5945:1551-1571 +
  17. scaffold_5985:1656-1676 +
  18. scaffold_6976:837-857 +
  19. scaffold_9466:417-437 +
  20. scaffold_10027:639-659 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TACATCATTAAATTTGCCAAAAATCGGCCTCATTTTCGAAGTCGAGATTTTGATGCCGTTCGACAGTCTGGATCCTCACGATCCTGGGACAGTTGATCCTTCCCCGATCTGGCCCTATCCGTCTGAGATATAGCCTTCCGAAGATGTGGATTCGCATTTCATTAAAATACTGATGTTTTCTGTACGCTATATCTCTTGCAGTCACTGGCTGTCCTTCTGCGGCCCACAGCCACGATTCCTCTGCTGTGTTG
**************************************************........(((......(((....((((.(((...(((.((((((.........))).))).))).....)))))))...)))......)))************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total V057
head
 M042
female body
 V111
male body		 V042
embryo
 M021
embryo
.....................................................................................................................................................................................................................CTTGTGCGGGCCACAGCCGCGA................ 22 3 1 1.00 1 1 0 0 0 0
.................................TTTCGAAGTCGAGATTTTGATGCCGT................................................................................................................................................................................................ 26 0 20 0.25 5 0 5 0 0 0
..................................................TGATGCCGTTCGACAGTCTGG.................................................................................................................................................................................... 21 0 20 0.20 4 1 0 3 0 0
.....................................................................................................................................................................................................................CTTGTGCGGCCCACAGCGGCG................. 21 3 6 0.17 1 1 0 0 0 0
......................................................................................................................CCGTCTGAGTTATAACCGT.................................................................................................................. 19 3 8 0.13 1 0 0 0 1 0
..................................................................TCTGGATCCTCACGATCCTGGGACAGT.............................................................................................................................................................. 27 0 8 0.13 1 0 1 0 0 0
.............................................GATTTTGATGCCGTTCGACA.......................................................................................................................................................................................... 20 0 20 0.10 2 0 0 0 0 2
.................................TTTCGAAGTCGAGATTTTGATGCCG................................................................................................................................................................................................. 25 0 20 0.10 2 0 2 0 0 0
.................................TTTCGAAGTCGAGATTTTGATGCC.................................................................................................................................................................................................. 24 0 20 0.10 2 0 2 0 0 0
.....................................GAAGTCGAGATTTTGATGCCGTTC.............................................................................................................................................................................................. 24 0 20 0.05 1 0 1 0 0 0
....................................................ATGCCGTTCGACAGTCTGGAT.................................................................................................................................................................................. 21 0 20 0.05 1 1 0 0 0 0
............................................AGATTTTGATGCCGTTCGA............................................................................................................................................................................................ 19 0 20 0.05 1 0 0 1 0 0
...................................TCGAAGTCGAGATTTTGATGCCGT................................................................................................................................................................................................ 24 0 20 0.05 1 0 1 0 0 0
................................................................AGTCTGGATCCTCACGATCCTGG.................................................................................................................................................................... 23 0 20 0.05 1 0 1 0 0 0
...................................................GATGCCGTTCGACAGTCTG..................................................................................................................................................................................... 19 0 20 0.05 1 0 1 0 0 0
..........................................................TTCGACAGTCTGGATCCTCAC............................................................................................................................................................................ 21 0 20 0.05 1 0 1 0 0 0
............................................AGATTTTGATGCCGTTCGAC........................................................................................................................................................................................... 20 0 20 0.05 1 0 0 1 0 0
................................TTTTCGAAGTCGAGATTTTGATGCCGT................................................................................................................................................................................................ 27 0 20 0.05 1 0 1 0 0 0
........................................................CGTTCGACAGTCTGGATCC................................................................................................................................................................................ 19 0 20 0.05 1 0 1 0 0 0
...................................................GATGCCGTTCGACAGTCTGG.................................................................................................................................................................................... 20 0 20 0.05 1 1 0 0 0 0
.........................................................................................................................TCTGAGATATAGCCTTCCGAA............................................................................................................. 21 0 20 0.05 1 0 1 0 0 0
............................................................................................................................................................................ATGTTTTCTGTCCGCTTTCT........................................................... 20 3 20 0.05 1 0 1 0 0 0
..............................................ATTTTGATGCCGTTCGACAGT........................................................................................................................................................................................ 21 0 20 0.05 1 0 0 1 0 0

Anti-sense strand reads

ATGTAGTAATTTAAACGGTTTTTAGCCGGAGTAAAAGCTTCAGCTCTAAAACTACGGCAAGCTGTCAGACCTAGGAGTGCTAGGACCCTGTCAACTAGGAAGGGGCTAGACCGGGATAGGCAGACTCTATATCGGAAGGCTTCTACACCTAAGCGTAAAGTAATTTTATGACTACAAAAGACATGCGATATAGAGAACGTCAGTGACCGACAGGAAGACGCCGGGTGTCGGTGCTAAGGAGACGACACAAC
*************************************************************************************************************........(((......(((....((((.(((...(((.((((((.........))).))).))).....)))))))...)))......)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 V111
male body		 V057
head
 M021
embryo
..................................................................................................................................................................................................................CAGAAAGAAGCCGGGCGTCGGTGC................. 24 3 1 1.00 1 1 0 0 0
.............................................................................................................................................................................................................................CGGGTGCCGGTGCTGAGGAG.......... 20 2 2 0.50 1 0 1 0 0
....................................................................................................................................CGGAATGCTTCGACACCTAAG.................................................................................................. 21 2 2 0.50 1 0 1 0 0
...............................................AAAACTACGGCAAGCTGTCAGACCTA.................................................................................................................................................................................. 26 0 20 0.25 5 5 0 0 0
.....................................................................................................................AGGTAGACTCGATATCGG.................................................................................................................... 18 2 5 0.20 1 0 0 1 0
..................................................ACTACGGCAAGCTGTCAGACC.................................................................................................................................................................................... 21 0 20 0.15 3 0 0 0 3
........................GCCGGAGTAAAAGCTTCAGCTCT............................................................................................................................................................................................................ 23 0 20 0.15 3 3 0 0 0
....................................................TACGGCAAGCTGTCAGACCTAGGAGT............................................................................................................................................................................. 26 0 20 0.05 1 0 1 0 0
............................................................................................................................CTCTATATCGGAATGCTTCGACACCT..................................................................................................... 26 2 20 0.05 1 1 0 0 0
.................................................AACTACGGCAAGCTGGCAGACCTA.................................................................................................................................................................................. 24 1 20 0.05 1 1 0 0 0
.........................................................CAAGCTGTCAGACCTAGGAGTGCTA......................................................................................................................................................................... 25 0 20 0.05 1 0 0 0 1
....................................................TACGGCAAGCTGTCAGGCCTAGG................................................................................................................................................................................ 23 1 20 0.05 1 0 0 0 1
.....................................................ATCGCAAGCTGTCAGACCTA.................................................................................................................................................................................. 20 2 20 0.05 1 0 0 1 0
.................................................................................................GGAAGGGGCAAGACACGGAT...................................................................................................................................... 20 3 20 0.05 1 0 0 1 0
.................................AAAGCTTCAGCTCTAAAACTACGGCAAG.............................................................................................................................................................................................. 28 0 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_15:1578847-1579097 + dpe_800 TACATCATTAAATTTGCCAAAAATCGGCCTCATTTTCGAAGTCGAGATTTTGATGCCGTTCGACAGTCTGGATCCTCACGATCCTGGGACAGTTGATCCTTCCCCGATCTGGCCCTATCCGTCTGAGATATAGCCTTCCGAAGATGTGGATTCGCATTTCATTAAAATACTGATGTTTTCTGTACGCTATATCTCTTGCAGTCACTGGCTGTCCTTCTGCGGCCCACAGCCACGATTCCTCTGCTGTGTTG
dp5 4_group3:841804-842054 - TACATCATTAAATTTGCAAAAAATCGGCCCCATTTTCGTAGCCGAGATTTCGATGCCATTCAACAGTCTGGATCCTCAAGATCCTGGGAGAGTTGGTCCTGCACCGATCTGACCCTATTTGTCTGAGAAATAGCCTTCCGAAGATTTGGATCTGCACATCATTACAATACTGGTTTTATCTGTACGCTATATCTCTTGCAGCCACTGCCTGTCCTGCTGCGGGCCGTAGCCATGATTCCACTGCTGTATCG
droEle1 scf7180000491249:831980-832039 + TACATCATTAAAATTGCAAAAAATCGACCCGATTTTACAAACCAAGTTTTTAACGCAGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
TACATCATTAAATTTGCCAAAAATCGGCCTCATTTTCGAAGTCGAGATTTTGATGCCGTTCGACAGTCTGGATCCTCACGATCCTGGGACAGTTGATCCTTCCCCGATCTGGCCCTATCCGTCTGAGATATAGCCTTCCGAAGATGTGGATTCGCATTTCATTAAAATACTGATGTTTTCTGTACGCTATATCTCTTGCAGTCACTGGCTGTCCTTCTGCGGCCCACAGCCACGATTCCTCTGCTGTGTTGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................TTTCGAAGTCGAGATTTTGATGCCGT................................................................................................................................................................................................26200.255050000
..................................................TGATGCCGTTCGACAGTCTGG....................................................................................................................................................................................21200.204000013
..................................................................TCTGGATCCTCACGATCCTGGGACAGT..............................................................................................................................................................2780.131010000
.............................................GATTTTGATGCCGTTCGACA..........................................................................................................................................................................................20200.102200000
.................................TTTCGAAGTCGAGATTTTGATGCCG.................................................................................................................................................................................................25200.102020000
.................................TTTCGAAGTCGAGATTTTGATGCC..................................................................................................................................................................................................24200.102020000
.....................................GAAGTCGAGATTTTGATGCCGTTC..............................................................................................................................................................................................24200.051010000
....................................................ATGCCGTTCGACAGTCTGGAT..................................................................................................................................................................................21200.051000010
............................................AGATTTTGATGCCGTTCGA............................................................................................................................................................................................19200.051000001
...................................TCGAAGTCGAGATTTTGATGCCGT................................................................................................................................................................................................24200.051010000
................................................................AGTCTGGATCCTCACGATCCTGG....................................................................................................................................................................23200.051010000
...................................................GATGCCGTTCGACAGTCTG.....................................................................................................................................................................................19200.051010000
..........................................................TTCGACAGTCTGGATCCTCAC............................................................................................................................................................................21200.051010000
............................................AGATTTTGATGCCGTTCGAC...........................................................................................................................................................................................20200.051000001
................................TTTTCGAAGTCGAGATTTTGATGCCGT................................................................................................................................................................................................27200.051010000
........................................................CGTTCGACAGTCTGGATCC................................................................................................................................................................................19200.051010000
...................................................GATGCCGTTCGACAGTCTGG....................................................................................................................................................................................20200.051000010
.........................................................................................................................TCTGAGATATAGCCTTCCGAA.............................................................................................................21200.051010000
..............................................ATTTTGATGCCGTTCGACAGT........................................................................................................................................................................................21200.051000001
dp5
TACATCATTAAATTTGCAAAAAATCGGCCCCATTTTCGTAGCCGAGATTTCGATGCCATTCAACAGTCTGGATCCTCAAGATCCTGGGAGAGTTGGTCCTGCACCGATCTGACCCTATTTGTCTGAGAAATAGCCTTCCGAAGATTTGGATCTGCACATCATTACAATACTGGTTTTATCTGTACGCTATATCTCTTGCAGCCACTGCCTGTCCTGCTGCGGGCCGTAGCCATGATTCCACTGCTGTATCGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................................................................................................................................................................................TAGCCATGATTCCACTGCTGT....2131.0030200001000
.....................................................................................................................TTTGTCTGAGAAATAGCCTTCCG...............................................................................................................2320.5010100000000
......................................................................................................................TTGTCTGAGAAATAGCCTTCCGA..............................................................................................................2320.5010100000000
.............................CCATTTTCGTAGCCGAGATTTCG.......................................................................................................................................................................................................2380.1310100000000
....................................................................TGGATCCTCAAGATCCTGGGAGAG...............................................................................................................................................................24200.1020200000000
........................................................................TCCTCAAGATCCTGGGAGAGTTGGTCC........................................................................................................................................................27180.0610100000000
........................................................CATTCAACAGTCTGGATCCTCAAG...........................................................................................................................................................................24180.0610000000001
...........................................................TCAACAGTCTGGATCCTCAAGAT.........................................................................................................................................................................23180.0610100000000
.......................................................CCATTCAACAGTCTGGATCCTCAAGA..........................................................................................................................................................................26180.0610000000100
.....................................................TGCCATTCAACAGTCTGGATCCTCA.............................................................................................................................................................................25180.0610100000000
................CAAAAAATCGGCCCCA...........................................................................................................................................................................................................................16190.0510000000100
.....................................................TGCCATTCAACAGTCTGGA...................................................................................................................................................................................19200.0510100000000
...............................ATTTTCGTAGCCGAGATTTCGATGCCG.................................................................................................................................................................................................27200.0510100000000
......................................................................................GGAGAGTTGGTCCTGCACC..................................................................................................................................................19200.0510100000000
......................................................................................GGAGAGTTGGTCCTGCACCGA................................................................................................................................................21200.0510100000000
....................................................................................TGGGAGAGTTGGTCCTGCACCGA................................................................................................................................................23200.0510100000000
droEle1
TACATCATTAAAATTGCAAAAAATCGACCCGATTTTACAAACCAAGTTTTTAACGCAGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads

Generated: 06/08/2015 at 03:15 PM