dpe_8

GAAGGTGCATGCGCCCGATCCGAAGTGCACGGGATTTCCTGCAGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTATTGAGCGACTCCCTAACGGAGTCAGATTGAATTACCAAGGAACAGACAACAGTGGAGCAAAAGACAAAGAACCGAAGTGT *********************************(((((.....(((((((.((((((((..((((((((((((.....))).)))))))))..)))))))).)))))))....)))))..**********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V057 head	V050 head	V111 male body	V042 embryo	M042 female body	M021 embryo
..................................................AAATTGACTCTAGTAGGGAGT.......................................................................................	21	0	1	18343.00	18343	6524	3913	7632	216	53	5
..................................................AAATTGACTCTAGTAGGGAGTC......................................................................................	22	0	1	14511.00	14511	9020	4145	1223	54	64	5
......................................................................................CTCCCTAACGGAGTCAGATTG...................................................	21	0	1	3906.00	3906	2509	1277	41	4	75	0
..................................................AAATTGACTCTAGTAGGGAGTCT.....................................................................................	23	1	1	1722.00	1722	1053	478	171	9	11	0
..................................................AAATTGACTCTAGTAGGGAGTCA.....................................................................................	23	1	1	1689.00	1689	1125	478	67	11	8	0
..................................................AAATTGACTCTAGTAGGGAG........................................................................................	20	0	1	1010.00	1010	508	312	177	1	11	1
......................................................................................CTCCCTAACGGAGTCAGATTGA..................................................	22	0	1	487.00	487	147	324	0	1	15	0
...................................................AATTGACTCTAGTAGGGAGTC......................................................................................	21	0	1	220.00	220	137	71	5	0	7	0
..................................................AAATTGACTCTAGTAGGGAGTCC.....................................................................................	23	0	1	196.00	196	124	45	26	0	1	0
....................................................ATTGACTCTAGTAGGGAGTC......................................................................................	20	0	1	179.00	179	171	5	1	0	2	0
..................................................AAATTGACTCTAGTAGGGA.........................................................................................	19	0	1	114.00	114	53	19	33	6	3	0
...................................................AATTGACTCTAGTAGGGAGT.......................................................................................	20	0	1	112.00	112	50	28	27	1	6	0
..................................................AAATTGACTCTAGCAGGGAGTC......................................................................................	22	1	1	84.00	84	69	15	0	0	0	0
..................................................AAATTGACTCTAGCAGGGAGT.......................................................................................	21	1	1	72.00	72	60	9	3	0	0	0
..................................................AAAGTGACTCTAGTAGGGAGTC......................................................................................	22	1	1	70.00	70	68	2	0	0	0	0
..................................................AAATTGACTCTAGTAGGGAGC.......................................................................................	21	1	1	67.00	67	50	8	9	0	0	0
..................................................AAATTGACTCTAGTAGGGAGCC......................................................................................	22	1	1	66.00	66	47	17	2	0	0	0
..................................................AAATTGACTCTAGAAGGGAGTC......................................................................................	22	1	1	58.00	58	52	4	1	0	1	0
..................................................AAATTGACTCTAGTAGGGCGT.......................................................................................	21	1	1	58.00	58	38	17	0	3	0	0
..................................................AAATGGACTCTAGTAGGGAGTC......................................................................................	22	1	1	57.00	57	55	1	1	0	0	0
..................................................AAATTGACTCTAGAAGGGAGT.......................................................................................	21	1	1	54.00	54	33	18	2	1	0	0
..................................................AAATTGACTCTAGTAGGGGGT.......................................................................................	21	1	1	53.00	53	38	8	6	1	0	0
..................................................AAAGTGACTCTAGTAGGGAGT.......................................................................................	21	1	1	53.00	53	50	2	1	0	0	0
..................................................AAATTGACTCTAGGAGGGAGTC......................................................................................	22	1	1	52.00	52	47	5	0	0	0	0
..................................................AAATTGACTCTAGGAGGGAGT.......................................................................................	21	1	1	49.00	49	40	6	3	0	0	0
..................................................AAATTGACTCTATTAGGGAGTC......................................................................................	22	1	1	48.00	48	33	14	1	0	0	0
..................................................AAATTGACTCTAGTAGGGAGGC......................................................................................	22	1	1	47.00	47	35	12	0	0	0	0
..................................................AAATTGACTCTAGTAGGGCGTC......................................................................................	22	1	1	47.00	47	37	9	0	1	0	0
..................................................AAATTGACTCTAGTAGGGAGTT......................................................................................	22	1	1	47.00	47	28	9	10	0	0	0
....................................................ATTGACTCTAGTAGGGAGT.......................................................................................	19	0	1	46.00	46	34	2	10	0	0	0
.......................................................................................TCCCTAACGGAGTCAGATTGA..................................................	21	0	1	43.00	43	22	19	0	0	0	2
..................................................AAATTGACTCTCGTAGGGAGT.......................................................................................	21	1	1	42.00	42	26	12	2	2	0	0
.......................................................................................TCCCTAACGGAGTCAGATTG...................................................	20	0	1	42.00	42	19	14	0	0	9	0
..................................................AAATTGACTCTCGTAGGGAGTC......................................................................................	22	1	1	39.00	39	31	8	0	0	0	0
..................................................AAATTGACTCTAGTAGGGAGG.......................................................................................	21	1	1	37.00	37	30	6	0	0	0	1
..................................................AAATTGACTCTAGTCGGGAGT.......................................................................................	21	1	1	37.00	37	22	15	0	0	0	0
..................................................AAATTGACTCTAGTAGAGAGTC......................................................................................	22	1	1	37.00	37	19	18	0	0	0	0
..................................................AAGTTGACTCTAGTAGGGAGT.......................................................................................	21	1	1	35.00	35	15	8	12	0	0	0
..................................................AAATTGACTCTAGTAGGGAGTCG.....................................................................................	23	1	1	35.00	35	26	3	4	0	2	0
..................................................AAATTGACTCTAGTAGCGAGTC......................................................................................	22	1	1	35.00	35	29	6	0	0	0	0
..................................................AAATTGACTCTAGTAGGGGGTC......................................................................................	22	1	1	34.00	34	26	7	0	0	0	1
..................................................AAATTGACTCTGGTAGGGAGT.......................................................................................	21	1	1	34.00	34	25	4	5	0	0	0
..................................................AAATTGACTCTAGTAGTGAGTC......................................................................................	22	1	1	33.00	33	23	8	2	0	0	0
..................................................AAATTGACTCTAGTAGGTAGTC......................................................................................	22	1	1	32.00	32	24	7	1	0	0	0
..................................................AAATTGACTCTAGTAGGGATTC......................................................................................	22	1	1	32.00	32	27	5	0	0	0	0
..................................................AAATTGACTCTAGTAGGGAGA.......................................................................................	21	1	1	32.00	32	22	5	5	0	0	0
..................................................AAATTGACTCTAGTAGGGAGTA......................................................................................	22	1	1	31.00	31	20	9	1	1	0	0
......................................................................................CTCCCTAACGGAGTCAGCTTG...................................................	21	1	1	31.00	31	19	12	0	0	0	0
..................................................AAATTGACTCTAGTATGGAGTC......................................................................................	22	1	1	31.00	31	25	5	0	1	0	0
..................................................AAATTGACTCTGGTAGGGAGTC......................................................................................	22	1	1	31.00	31	27	4	0	0	0	0
..................................................AAATTGACTCTAGTAAGGAGTC......................................................................................	22	1	1	31.00	31	20	11	0	0	0	0
..................................................AAATTGACTCTATTAGGGAGT.......................................................................................	21	1	1	30.00	30	21	6	3	0	0	0
..................................................AAATTGACTCTAGTAGGTAGT.......................................................................................	21	1	1	30.00	30	17	7	6	0	0	0
..................................................AAATAGACTCTAGTAGGGAGTC......................................................................................	22	1	1	30.00	30	30	0	0	0	0	0
..................................................AAATTGACTCTAGTAGAGAGT.......................................................................................	21	1	1	29.00	29	14	13	2	0	0	0
..................................................AAATTGACTCTAGTAGGCAGTC......................................................................................	22	1	1	29.00	29	27	2	0	0	0	0
..................................................AAATGGACTCTAGTAGGGAGT.......................................................................................	21	1	1	28.00	28	25	2	1	0	0	0
..................................................AAATTGACTCTAGTAGGGTGT.......................................................................................	21	1	1	28.00	28	23	4	1	0	0	0
......................................................................................TTCCCTAACGGAGTCAGATTG...................................................	21	1	1	27.00	27	23	4	0	0	0	0
..................................................AAATTGACTCTAGTCGGGAGTC......................................................................................	22	1	1	27.00	27	19	7	0	1	0	0
..................................................AAATTGACTCTAGTAGGGAGTTT.....................................................................................	23	2	1	27.00	27	11	5	10	0	1	0
..................................................AAATTGACTCTAGTATGGAGT.......................................................................................	21	1	1	27.00	27	11	3	13	0	0	0
......................................................................................ATCCCTAACGGAGTCAGATTG...................................................	21	1	1	27.00	27	20	7	0	0	0	0
..................................................AAATTCACTCTAGTAGGGAGTC......................................................................................	22	1	1	27.00	27	13	13	1	0	0	0
..................................................AAGTTGACTCTAGTAGGGAGTC......................................................................................	22	1	1	27.00	27	21	4	2	0	0	0
..................................................AAATTGAATCTAGTAGGGAGTC......................................................................................	22	1	1	26.00	26	22	2	1	1	0	0
..................................................AAATTGGCTCTAGTAGGGAGTC......................................................................................	22	1	1	26.00	26	19	7	0	0	0	0
..................................................AAATTGACTCTAGTAGCGAGT.......................................................................................	21	1	1	26.00	26	23	3	0	0	0	0
..................................................AAATTGACTCTAGTGGGGAGT.......................................................................................	21	1	1	25.00	25	17	4	4	0	0	0
..................................................AAATTGACCCTAGTAGGGAGT.......................................................................................	21	1	1	25.00	25	7	6	11	1	0	0
..................................................AAATTGACTCTAGTAGTGAGT.......................................................................................	21	1	1	25.00	25	13	6	6	0	0	0
......................................................................................CTCCCTAACGGAGTCAGAGTG...................................................	21	1	1	24.00	24	20	4	0	0	0	0
..................................................AAATTGACTCTACTAGGGAGTC......................................................................................	22	1	1	24.00	24	19	5	0	0	0	0
..................................................AGATTGACTCTAGTAGGGAGT.......................................................................................	21	1	1	24.00	24	12	5	6	1	0	0
..................................................AAATTGGCTCTAGTAGGGAGT.......................................................................................	21	1	1	24.00	24	14	5	4	1	0	0
......................................................................................CTCCCTAACGGAGCCAGATTG...................................................	21	1	1	23.00	23	19	4	0	0	0	0
..................................................AAACTGACTCTAGTAGGGAGTC......................................................................................	22	1	1	23.00	23	20	2	1	0	0	0
..................................................AAACTGACTCTAGTAGGGAGT.......................................................................................	21	1	1	23.00	23	20	3	0	0	0	0
..................................................GAATTGACTCTAGTAGGGAGTC......................................................................................	22	1	1	22.00	22	11	8	3	0	0	0
..................................................AAATTGACTCTAGTGGGGAGTC......................................................................................	22	1	1	22.00	22	15	6	1	0	0	0
......................................................................................CTCCCTAACGGCGTCAGATTG...................................................	21	1	1	22.00	22	17	5	0	0	0	0
..................................................AAATTGACTCTAGTAGGGTGTC......................................................................................	22	1	1	22.00	22	21	1	0	0	0	0
..................................................AAATTGACTCTAGTAAGGAGT.......................................................................................	21	1	1	21.00	21	7	10	4	0	0	0
..................................................AAATTGACTCTAGTAGGCAGT.......................................................................................	21	1	1	21.00	21	18	1	2	0	0	0
..................................................AAATTGACTCTAGTACGGAGTC......................................................................................	22	1	1	20.00	20	18	1	0	1	0	0
..................................................AAATTGAATCTAGTAGGGAGT.......................................................................................	21	1	1	20.00	20	17	3	0	0	0	0
..................................................AAATTGACTCTAGTAGGGAGAC......................................................................................	22	1	1	20.00	20	13	7	0	0	0	0
..................................................AAATTGACTATAGTAGGGAGTC......................................................................................	22	1	1	20.00	20	15	4	1	0	0	0
....................................................ATTGACTCTAGTAGGGAGTCC.....................................................................................	21	0	1	20.00	20	13	7	0	0	0	0
..................................................AAATTGACTCTAGTAGGG..........................................................................................	18	0	1	20.00	20	12	7	0	0	0	1
..................................................AAATTGCCTCTAGTAGGGAGTC......................................................................................	22	1	1	19.00	19	13	6	0	0	0	0
..................................................AAAGGGACTCTAGTAGGGAGTC......................................................................................	22	2	1	19.00	19	19	0	0	0	0	0
..................................................CAATTGACTCTAGTAGGGAGT.......................................................................................	21	1	1	19.00	19	1	0	18	0	0	0
..................................................AAATTAACTCTAGTAGGGAGTC......................................................................................	22	1	1	19.00	19	9	10	0	0	0	0
..................................................AAATTCACTCTAGTAGGGAGT.......................................................................................	21	1	1	19.00	19	7	11	1	0	0	0
..................................................GAATTGACTCTAGTAGGGAGT.......................................................................................	21	1	1	18.00	18	10	3	5	0	0	0
..................................................AAATCGACTCTAGTAGGGAGT.......................................................................................	21	1	1	18.00	18	11	3	4	0	0	0
..................................................AAATTGACTCTAGTACGGAGT.......................................................................................	21	1	1	18.00	18	14	4	0	0	0	0
..................................................AGATTGACTCTAGTAGGGAGTC......................................................................................	22	1	1	18.00	18	12	5	1	0	0	0
..................................................AAATTAACTCTAGTAGGGAGT.......................................................................................	21	1	1	17.00	17	2	9	6	0	0	0
..................................................TAATTGACTCTAGTAGGGAGT.......................................................................................	21	1	1	17.00	17	11	3	3	0	0	0
..................................................AAATTGACTCTAGTAGGGCGTCT.....................................................................................	23	2	1	17.00	17	15	2	0	0	0	0
..................................................AAATTGACTCTAGCAGGGAGTCA.....................................................................................	23	2	1	16.00	16	13	3	0	0	0	0
.................................................CAAATTGACTCTAGTAGGGAGT.......................................................................................	22	0	1	16.00	16	4	4	6	0	2	0
..................................................AAATCGACTCTAGTAGGGAGTC......................................................................................	22	1	1	16.00	16	15	1	0	0	0	0
..................................................AAAGGGACTCTAGTAGGGAGT.......................................................................................	21	2	1	16.00	16	15	1	0	0	0	0
......................................................................................CTCCCGAACGGAGTCAGATTG...................................................	21	1	1	16.00	16	8	8	0	0	0	0
..................................................AAATTGACTATAGTAGGGAGT.......................................................................................	21	1	1	16.00	16	11	2	3	0	0	0
......................................................................................CTCCCTAACGGAGACAGATTG...................................................	21	1	1	16.00	16	15	1	0	0	0	0
......................................................................................CTCCCTAACGGAGTCAGATT....................................................	20	0	1	15.00	15	11	2	0	0	2	0
..................................................TAATTGACTCTAGTAGGGAGTC......................................................................................	22	1	1	15.00	15	14	1	0	0	0	0
..................................................AAATTGACTCTACTAGGGAGT.......................................................................................	21	1	1	15.00	15	11	2	2	0	0	0
......................................................................................CTACCTAACGGAGTCAGATTG...................................................	21	1	1	15.00	15	14	1	0	0	0	0
..................................................AAATTGACTCTAGTAGGGACTC......................................................................................	22	1	1	15.00	15	12	3	0	0	0	0
..................................................AAATTGACTCTAGTAGGGATT.......................................................................................	21	1	1	14.00	14	10	4	0	0	0	0
..................................................AAATAGACTCTAGTAGGGAGT.......................................................................................	21	1	1	14.00	14	14	0	0	0	0	0
..................................................AAATTGACTCTAGTAGGAAGT.......................................................................................	21	1	1	14.00	14	5	7	2	0	0	0
..................................................AAATTGACTCTAGTTGGGAGT.......................................................................................	21	1	1	14.00	14	11	2	1	0	0	0
..................................................AAATTGACTCCAGTAGGGAGTC......................................................................................	22	1	1	14.00	14	12	2	0	0	0	0
..................................................AAATTGACTCCAGTAGGGAGT.......................................................................................	21	1	1	13.00	13	8	4	1	0	0	0
..................................................AAATTGACTCTAGTAGGGAGCCT.....................................................................................	23	2	1	13.00	13	13	0	0	0	0	0
..................................................AAATTGTCTCTAGTAGGGAGT.......................................................................................	21	1	1	13.00	13	11	2	0	0	0	0
..................................................AAATTGACTCGAGTAGGGAGTC......................................................................................	22	1	1	13.00	13	13	0	0	0	0	0
..................................................AAATTGTCTCTAGTAGGGAGTC......................................................................................	22	1	1	13.00	13	9	4	0	0	0	0
..................................................AAATTGACTCTAGCAGGGAGTCT.....................................................................................	23	2	1	12.00	12	10	2	0	0	0	0
..................................................AAATTGACTCTAGTAGCGAG........................................................................................	20	1	1	12.00	12	7	5	0	0	0	0
..................................................AAATTGACTCTAATAGGGAGT.......................................................................................	21	1	1	12.00	12	5	3	3	1	0	0
......................................................................................CTCCCTAACGGAGTCAGACTG...................................................	21	1	1	12.00	12	10	2	0	0	0	0
..................................................AAATTGACTCTAGTAGGGACT.......................................................................................	21	1	1	12.00	12	10	2	0	0	0	0
......................................................................................CTCCCTAACGGAGTCAGTTTG...................................................	21	1	1	12.00	12	11	1	0	0	0	0
..................................................AAATTGACGCTAGTAGGGAGTC......................................................................................	22	1	1	12.00	12	12	0	0	0	0	0
......................................................................................CTCCCTAACGGAGGCAGATTG...................................................	21	1	1	12.00	12	11	1	0	0	0	0
......................................................................................CTCCCTAACGCAGTCAGATTG...................................................	21	1	1	11.00	11	10	1	0	0	0	0
..................................................AAATTGATTCTAGTAGGGAGTC......................................................................................	22	1	1	11.00	11	7	4	0	0	0	0
..................................................AAATTGACTCTAGTAGGGAGTTA.....................................................................................	23	2	1	11.00	11	9	0	2	0	0	0
..................................................AAAGGGACTCTAGGAGGGAGTC......................................................................................	22	3	1	11.00	11	11	0	0	0	0	0
..................................................AAATTGCCTCTAGTAGGGAGT.......................................................................................	21	1	1	11.00	11	8	2	1	0	0	0
......................................................................................CGCCCTAACGGAGTCAGATTG...................................................	21	1	1	11.00	11	9	2	0	0	0	0
......................................................................................CTCCCTAACGGAGTCACATTG...................................................	21	1	1	11.00	11	9	2	0	0	0	0
..................................................AAAGTGACTCTAGGAGGGAGTC......................................................................................	22	2	1	11.00	11	10	1	0	0	0	0
......................................................................................CTCCCTAACGGAGTCAGATCG...................................................	21	1	1	11.00	11	6	5	0	0	0	0
..................................................AAATTGACTCTAGTTGGGAGTC......................................................................................	22	1	1	11.00	11	9	2	0	0	0	0
..................................................AAATTGACTCTAGTAGGGT.........................................................................................	19	1	1	11.00	11	4	3	4	0	0	0
..................................................AAATTGACTCGAGTAGGGAGT.......................................................................................	21	1	1	10.00	10	10	0	0	0	0	0
..................................................AAATTGACTCTAGTAGGAAGTC......................................................................................	22	1	1	10.00	10	6	4	0	0	0	0
..................................................AAATTGACTCTAGTAGGGAGTCTT....................................................................................	24	1	1	10.00	10	10	0	0	0	0	0
..................................................AAATTGACTCTAGTAGGGAAT.......................................................................................	21	1	1	10.00	10	4	3	2	1	0	0
..................................................AAATTGACTCTAGTCGGGAGTCA.....................................................................................	23	2	1	10.00	10	9	1	0	0	0	0
..................................................AAATTGACCCTAGTAGGGAGTC......................................................................................	22	1	1	10.00	10	7	2	1	0	0	0
..................................................AAATTGAGTCTAGTAGGGAGT.......................................................................................	21	1	1	10.00	10	5	3	2	0	0	0
..................................................AAATGGACTCTAGGAGGGAGTC......................................................................................	22	2	1	10.00	10	10	0	0	0	0	0
..................................................AAAATGACTCTAGTAGGGAGTC......................................................................................	22	1	1	10.00	10	9	1	0	0	0	0
..................................................AAATTGACACTAGTAGGGAGTC......................................................................................	22	1	1	9.00	9	7	1	0	0	1	0
..................................................AAATTGACTTTAGTAGGGAGT.......................................................................................	21	1	1	9.00	9	4	3	1	1	0	0
......................................................................................CTCCCTAACGGAGTCAGATTGT..................................................	22	1	1	9.00	9	5	4	0	0	0	0
..................................................AAATTGACTCTAATAGGGAGTC......................................................................................	22	1	1	9.00	9	5	3	1	0	0	0
......................................................................................CTCCCTAACGGAGTCAGGTTG...................................................	21	1	1	9.00	9	7	2	0	0	0	0
..................................................AAATTGAGTCTAGTAGGGAGTC......................................................................................	22	1	1	9.00	9	9	0	0	0	0	0
..................................................AAATTGATTCTAGTAGGGAGT.......................................................................................	21	1	1	9.00	9	6	1	2	0	0	0
..................................................AAAGTGACTCTAGGAGGGAGT.......................................................................................	21	2	1	9.00	9	8	0	0	1	0	0
...................................................AATTGACTCTAGTAGGGAG........................................................................................	19	0	1	9.00	9	5	2	0	0	1	1
..................................................AAAGTGACTCTAGCAGGGAGT.......................................................................................	21	2	1	9.00	9	8	1	0	0	0	0
..................................................AAATTGACTCTAGTAGGGAGTG......................................................................................	22	1	1	9.00	9	7	2	0	0	0	0
..................................................AAATTGACTTTAGTAGGGAGTC......................................................................................	22	1	1	9.00	9	6	3	0	0	0	0
......................................................................................CTCCATAACGGAGTCAGATTG...................................................	21	1	1	9.00	9	9	0	0	0	0	0
......................................................................................CTCCCCAACGGAGTCAGATTG...................................................	21	1	1	9.00	9	4	4	1	0	0	0
..................................................AAAGTGACTCTAGCAGGGAGTC......................................................................................	22	2	1	9.00	9	8	1	0	0	0	0
..................................................AAATTGACTCTAGTAGGGAATC......................................................................................	22	1	1	9.00	9	5	4	0	0	0	0
..................................................AAATTGACTCTAGTAGGT..........................................................................................	18	1	1	8.00	8	6	1	0	0	0	1
..................................................AAATTGACTCTAGTAGCGAGTCT.....................................................................................	23	2	1	8.00	8	8	0	0	0	0	0
....................................................ATTGACTCTAGTAGGGAGTCT.....................................................................................	21	1	1	8.00	8	7	1	0	0	0	0
..................................................ATATTGACTCTAGTAGGGAGT.......................................................................................	21	1	1	8.00	8	5	2	1	0	0	0
..................................................AAATTTACTCTAGTAGGGAGTC......................................................................................	22	1	1	8.00	8	4	3	1	0	0	0
..................................................ACATTGACTCTAGTAGGGAGT.......................................................................................	21	1	1	8.00	8	7	0	1	0	0	0
..................................................AAATTGACTCTAGTAGGGCGTCA.....................................................................................	23	2	1	7.00	7	5	2	0	0	0	0
..................................................ACATTGACTCTAGTAGGGAGTC......................................................................................	22	1	1	7.00	7	6	1	0	0	0	0
......................................................................................CTCCCTAACGGATTCAGATTG...................................................	21	1	1	7.00	7	6	0	0	0	1	0
......................................................................................CTCACTAACGGAGTCAGATTG...................................................	21	1	1	7.00	7	4	3	0	0	0	0
...................................................AATTGACTCTAGTAGGGAGTCC.....................................................................................	22	0	1	7.00	7	7	0	0	0	0	0
..................................................AAATTGACTCTAGCAGCGAGTC......................................................................................	22	2	1	7.00	7	7	0	0	0	0	0
..................................................AAATTGACTCTTGTAGGGAGT.......................................................................................	21	1	1	7.00	7	3	2	2	0	0	0
..................................................AAATTGACTCTTGTAGGGAGTC......................................................................................	22	1	1	7.00	7	7	0	0	0	0	0
..................................................AAATTGACTCTAGTCGGGAGTCT.....................................................................................	23	2	1	7.00	7	4	3	0	0	0	0
..................................................AAATTGACTCTAGGAGGGAGGC......................................................................................	22	2	1	7.00	7	5	2	0	0	0	0
......................................................................................CTCCCTAACGGAGTCAGATAG...................................................	21	1	1	7.00	7	3	4	0	0	0	0
......................................................................................CTCCCTCACGGAGTCAGATTG...................................................	21	1	1	7.00	7	7	0	0	0	0	0
..................................................AAATTGACTCTAGGAGGGAGTCT.....................................................................................	23	2	1	7.00	7	7	0	0	0	0	0
......................................................................................CTCCCTAACGGCGTCAGCTTG...................................................	21	2	1	6.00	6	6	0	0	0	0	0
..................................................AAATTGACTCTGGTAGGGAGTCT.....................................................................................	23	2	1	6.00	6	4	1	1	0	0	0
..................................................AAATTGACTCTAGTAGGGTGTCT.....................................................................................	23	2	1	6.00	6	6	0	0	0	0	0
..................................................AAATTGACTCTAGGAGGGAGTCA.....................................................................................	23	2	1	6.00	6	5	1	0	0	0	0
..................................................AAATTGACTCTAGTTGGGAGTCT.....................................................................................	23	2	1	6.00	6	6	0	0	0	0	0
..................................................AAAGTGACTCTAGTAGGGAGTCT.....................................................................................	23	2	1	6.00	6	6	0	0	0	0	0
..................................................AAATTGACTCTAGTAGAGAG........................................................................................	20	1	1	6.00	6	5	0	1	0	0	0
..................................................AAATTGACTCTCGTAGGGAGTCA.....................................................................................	23	2	1	6.00	6	6	0	0	0	0	0
..................................................AAATTGACTCTAGTAGGCAGTCA.....................................................................................	23	2	1	6.00	6	4	2	0	0	0	0
......................................................................................CCCCCTAACGGAGTCAGATTG...................................................	21	1	1	6.00	6	4	2	0	0	0	0
..................................................AAATTGACTCTATTAGTGAGTC......................................................................................	22	2	1	6.00	6	4	2	0	0	0	0
......................................................................................CTCCCTAACGGAGTCGGATTG...................................................	21	1	1	6.00	6	6	0	0	0	0	0
......................................................................................CTCCCTAACGGAGTAAGATTG...................................................	21	1	1	6.00	6	6	0	0	0	0	0
..................................................AAACAGACTCTAGTAGGGAGT.......................................................................................	21	2	1	6.00	6	6	0	0	0	0	0
..................................................AAATTGACTCTAGAAGGGAGTCT.....................................................................................	23	2	1	6.00	6	4	1	1	0	0	0
..................................................AAATTGACTCTAGTAGGGGGTCT.....................................................................................	23	2	1	6.00	6	4	2	0	0	0	0
..................................................AAAGTGACGCTAGTAGGGAGTC......................................................................................	22	2	1	6.00	6	6	0	0	0	0	0
..................................................AAATTGACTCTAGTAGGGCG........................................................................................	20	1	1	6.00	6	4	2	0	0	0	0
......................................................................................CTCCCTAACGGAGTCAGATGG...................................................	21	1	1	6.00	6	6	0	0	0	0	0
......................................................................................CTCCCTAACGGAGTCCGATTG...................................................	21	1	1	6.00	6	4	2	0	0	0	0
..................................................AACTTGACTCTAGTAGGGAGTC......................................................................................	22	1	1	6.00	6	5	1	0	0	0	0
......................................................................................CTCCCTAACGAAGTCAGATTG...................................................	21	1	1	6.00	6	4	2	0	0	0	0
..................................................AAATTGACACTAGTAGGGAGT.......................................................................................	21	1	1	6.00	6	2	1	2	0	1	0
......................................................................................CTCCCTAATGGAGTCAGATTG...................................................	21	1	1	6.00	6	3	2	0	0	1	0
......................................................................................CTCCCTAACGGGGTCAGATTG...................................................	21	1	1	6.00	6	3	3	0	0	0	0
......................................................................................CTCCCTACCGGAGTCAGATTG...................................................	21	1	1	6.00	6	5	1	0	0	0	0
..................................................AAATGGACTCTAGGAGGGAGT.......................................................................................	21	2	1	6.00	6	6	0	0	0	0	0
..................................................AAATTGACTCAAGTAGGGAGT.......................................................................................	21	1	1	6.00	6	4	2	0	0	0	0
..................................................AAATCGACTCTAGTAGGGAGTCT.....................................................................................	23	2	1	6.00	6	6	0	0	0	0	0
......................................................................................CTCCCTAGCGGAGTCAGATTG...................................................	21	1	1	6.00	6	5	1	0	0	0	0
..................................................AAATTGACTCTAGTAGGAAG........................................................................................	20	1	1	5.00	5	2	3	0	0	0	0
..................................................AAATTGACTCTAGCAGGGAG........................................................................................	20	1	1	5.00	5	4	1	0	0	0	0
......................................................................................CTCCCTAACGGAGACAGATTGA..................................................	22	1	1	5.00	5	4	1	0	0	0	0
..................................................AAATGGACTCTAGTAGGGAGTCT.....................................................................................	23	2	1	5.00	5	5	0	0	0	0	0
..................................................TAATTGACTCTAGTAGGGAGTCT.....................................................................................	23	2	1	5.00	5	5	0	0	0	0	0
..................................................AAATTGACTCTAGTAGGGGGTCA.....................................................................................	23	2	1	5.00	5	5	0	0	0	0	0
......................................................................................CTCCCTAACGGAGTCAGATTGAT.................................................	23	1	1	5.00	5	4	1	0	0	0	0
..................................................AAATTGACTCTAGCAGCGAGT.......................................................................................	21	2	1	5.00	5	4	1	0	0	0	0
..................................................AAATTGACTCTAGTATGGAG........................................................................................	20	1	1	5.00	5	3	1	1	0	0	0
..................................................AAATTGACTCTAGTAGAGAGTCA.....................................................................................	23	2	1	5.00	5	3	2	0	0	0	0
..................................................AAATTGACTCTAGTAGGGAGTCTC....................................................................................	24	2	1	5.00	5	4	1	0	0	0	0
..................................................AAACTGACTCTAGAAGGGAGTC......................................................................................	22	2	1	5.00	5	4	1	0	0	0	0
..................................................AAAGTGACTCTAGTAGGGAGCC......................................................................................	22	2	1	5.00	5	5	0	0	0	0	0
..................................................AAATTGACTCTCGCAGGGAGT.......................................................................................	21	2	1	5.00	5	2	3	0	0	0	0
..................................................AAATTGACTCTAGTAGGGGG........................................................................................	20	1	1	5.00	5	4	1	0	0	0	0
......................................................................................CTCCCTAACGGAGTCATATTG...................................................	21	1	1	5.00	5	5	0	0	0	0	0
..................................................AAATTGACTCTAGTAGGGAGGCA.....................................................................................	23	2	1	5.00	5	5	0	0	0	0	0
..................................................AAATTGACTCTAGTAGTGAGTCT.....................................................................................	23	2	1	5.00	5	3	1	1	0	0	0
..................................................AAATTGACTCTCGTAGGGAGG.......................................................................................	21	2	1	5.00	5	3	2	0	0	0	0
...................................................AATTGACTCTAGTAGGGAGTCT.....................................................................................	22	1	1	5.00	5	1	2	1	0	1	0
..................................................CAATTGACTCTAGTAGGGAGTC......................................................................................	22	1	1	5.00	5	0	3	2	0	0	0
..................................................AAAATGACTCTAGTAGGGCGTC......................................................................................	22	2	1	5.00	5	4	1	0	0	0	0
..................................................AAATTGACTCTAGAAGGGAGTCA.....................................................................................	23	2	1	5.00	5	5	0	0	0	0	0
..................................................AAATTGACTCTAGTAGGTAG........................................................................................	20	1	1	5.00	5	2	3	0	0	0	0
......................................................................................CTCCCTAACGGACTCAGATTG...................................................	21	1	1	5.00	5	5	0	0	0	0	0
..................................................AAATTGACTCTAGCAGGGAGC.......................................................................................	21	2	1	5.00	5	5	0	0	0	0	0
..................................................AAATTGACTCTAGAAGGGAG........................................................................................	20	1	1	5.00	5	5	0	0	0	0	0
..................................................AAATTGACTCTAGCAGGGAGCC......................................................................................	22	2	1	5.00	5	4	1	0	0	0	0
......................................................................................CTCCCTAACGGTGTCAGATTG...................................................	21	1	1	5.00	5	5	0	0	0	0	0
..................................................AAACTGACTCTAGTAGGGGGT.......................................................................................	21	2	1	5.00	5	5	0	0	0	0	0
..................................................AAATTGACTCTAGTAGGGAA........................................................................................	20	1	1	5.00	5	2	0	2	0	1	0
..................................................AAATTGACTCTAGTAGGGAGTAT.....................................................................................	23	2	1	5.00	5	5	0	0	0	0	0
..................................................AAATTGACTCTAGTGGGGAG........................................................................................	20	1	1	5.00	5	5	0	0	0	0	0
..................................................AAATTGACTCTAGTAGGGTGTCA.....................................................................................	23	2	1	4.00	4	4	0	0	0	0	0
..................................................AAATTGACTCTAGAACGGAGTC......................................................................................	22	2	1	4.00	4	3	1	0	0	0	0
..................................................AAATTGACTCTATTAGGGAGTCT.....................................................................................	23	2	1	4.00	4	3	1	0	0	0	0
..................................................AAATAGACTCTAGTAGAGAGTC......................................................................................	22	2	1	4.00	4	4	0	0	0	0	0
..................................................AAAGTGACTCTAGTAGGGAGC.......................................................................................	21	2	1	4.00	4	4	0	0	0	0	0
..................................................AAATTGACTCTCGTAGGAAGT.......................................................................................	21	2	1	4.00	4	3	1	0	0	0	0
......................................................................................CTCCCTAACGGAGTTAGATTG...................................................	21	1	1	4.00	4	1	2	1	0	0	0
..................................................AAATAGACTCTAGTAGGGAGTCT.....................................................................................	23	2	1	4.00	4	4	0	0	0	0	0
..................................................AAATTGACTCTAGTAAGGAG........................................................................................	20	1	1	4.00	4	2	1	1	0	0	0
..................................................AAATTTACTCTAGTAGGGAGT.......................................................................................	21	1	1	4.00	4	1	0	3	0	0	0
......................................................................................CTCCCTAAAGGAGTCAGATTG...................................................	21	1	1	4.00	4	2	0	0	0	2	0
..................................................AAATTGACTCTAGTAGGGAGTAA.....................................................................................	23	2	1	4.00	4	2	1	1	0	0	0
..................................................AAATTGACTCTAGTAAGGAGTCA.....................................................................................	23	2	1	4.00	4	3	1	0	0	0	0
..................................................AAATTGACTCTAGTCGCGAGT.......................................................................................	21	2	1	4.00	4	2	2	0	0	0	0
..................................................AAATTGACTCTAGTAGGGATCC......................................................................................	22	2	1	4.00	4	3	1	0	0	0	0
..................................................AAATTGTCTCTGGTAGGGAGTC......................................................................................	22	2	1	4.00	4	2	2	0	0	0	0
......................................................................................CTCCCTAACGGAGTCAGTTTGA..................................................	22	1	1	4.00	4	2	2	0	0	0	0
......................................................................................CTCCCTAACGGAGTCAGATTC...................................................	21	1	1	4.00	4	3	1	0	0	0	0
..................................................AAAATGACTCTAGTAGGGAGT.......................................................................................	21	1	1	4.00	4	3	1	0	0	0	0
..................................................AAATTGACTCTCGTAGGGAGTCT.....................................................................................	23	2	1	4.00	4	3	1	0	0	0	0
..................................................AAATTGACTCTAGGAGGGAGC.......................................................................................	21	2	1	4.00	4	4	0	0	0	0	0
..................................................AAATTGCCTCTAGTAGGGCGTC......................................................................................	22	2	1	4.00	4	3	1	0	0	0	0
..................................................ATATTGACTCTAGTAGGGAGTC......................................................................................	22	1	1	4.00	4	4	0	0	0	0	0
..................................................AAATTGACTCTAGTAGGGACTCA.....................................................................................	23	2	1	4.00	4	3	1	0	0	0	0
......................................................................................CTCCCTAACGGAGTCAGATTT...................................................	21	1	1	4.00	4	3	1	0	0	0	0
..................................................AAATTGACTCTAGTGGGGAGTCA.....................................................................................	23	2	1	4.00	4	2	1	1	0	0	0
..................................................AAATTGACTCTAGTAGTGAGTCA.....................................................................................	23	2	1	4.00	4	2	2	0	0	0	0
..................................................AAATTGACTCTAGTCGGGCGTC......................................................................................	22	2	1	4.00	4	3	1	0	0	0	0
..................................................AAACTGACTCTAGCAGGGAGTC......................................................................................	22	2	1	4.00	4	3	1	0	0	0	0
..................................................AAATTGAATCTAGTAGGGAGTCT.....................................................................................	23	2	1	4.00	4	4	0	0	0	0	0
..................................................AAATTCACTCTAGTAGGGAGTCT.....................................................................................	23	2	1	4.00	4	1	3	0	0	0	0
..................................................AAATGGACTCTAGTAGGGACTC......................................................................................	22	2	1	4.00	4	4	0	0	0	0	0
......................................................................................CTCCCTAAGGGAGTCAGATTG...................................................	21	1	1	4.00	4	2	0	0	0	2	0
..................................................AAATTGACTCTAGCCGGGCGT.......................................................................................	21	3	1	4.00	4	4	0	0	0	0	0
......................................................................................ATCCCTAACGGAGTCAGATTGA..................................................	22	1	1	4.00	4	4	0	0	0	0	0
..................................................AAATGGACGCTAGTAGGGAGTC......................................................................................	22	2	1	4.00	4	4	0	0	0	0	0
..................................................AAAGTGACTCTAGTAGCGAGTC......................................................................................	22	2	1	4.00	4	4	0	0	0	0	0
..................................................AAATTGACGCTAGTAGGGAGTCA.....................................................................................	23	2	1	4.00	4	4	0	0	0	0	0
..................................................AAATTGACTCTAGCAGGGAGA.......................................................................................	21	2	1	4.00	4	2	2	0	0	0	0
..................................................AAATTGACTCTCGTATGGAGTC......................................................................................	22	2	1	4.00	4	4	0	0	0	0	0
..................................................AAATTGACTCTAGTAGGTAGTCA.....................................................................................	23	2	1	4.00	4	3	1	0	0	0	0
..................................................AAATTGACGCTAGGAGGGAGTC......................................................................................	22	2	1	4.00	4	2	2	0	0	0	0
..................................................AAATTGGCTCTAGTAGGGAGTCT.....................................................................................	23	2	1	4.00	4	2	2	0	0	0	0
..................................................AAATTGACTCTAGTAAGGAGGC......................................................................................	22	2	1	4.00	4	4	0	0	0	0	0
..................................................AAATTGACTCTCGTATGGAGT.......................................................................................	21	2	1	4.00	4	4	0	0	0	0	0
..................................................AAATTGACTCTAGAAGCGAGTC......................................................................................	22	2	1	4.00	4	3	1	0	0	0	0
..................................................AAATTGACTCTGGTAGGGAGTCA.....................................................................................	23	2	1	4.00	4	3	1	0	0	0	0
..................................................AAATTGACTCTAGTTGGGAGTCA.....................................................................................	23	2	1	3.00	3	3	0	0	0	0	0
..................................................AAATTGACTCTAGTAGGGAGAA......................................................................................	22	2	1	3.00	3	2	1	0	0	0	0
..................................................AAATTGACTCTCGTAGGGAGC.......................................................................................	21	2	1	3.00	3	3	0	0	0	0	0
..................................................AAATTGACTGTAGTAGGGAGTCA.....................................................................................	23	2	1	3.00	3	0	3	0	0	0	0

CTTCCACGTACGCGGGCTAGGCTTCACGTGCCCTAAAGGACGTCGTCAAGTTTAACTGAGATCATCCCTCAGGAAAATAACTCGCTGAGGGATTGCCTCAGTCTAACTTAATGGTTCCTTGTCTGTTGTCACCTCGTTTTCTGTTTCTTGGCTTCACA **********************************(((((.....(((((((.((((((((..((((((((((((.....))).)))))))))..)))))))).)))))))....)))))..*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V057 head	M021 embryo
....................................................................................CTGAGGGATTCCCTCAGTCAAA....................................................	22	2	1	1.00	1	1	0
.............GGCCTAGGCTTCAGGTGC...............................................................................................................................	18	2	5	0.20	1	0	1

Species	Coordinate	ID	Type	Alignment
droPer2	scaffold_6:111416-111573 -	dpe_8	confident	GAAGGTG-----CATGCGCCC-GATCCGAAGT-------------------------------------------------------------GC---ACGGGATTTCCTGCAGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTATTGAGCGACTCCCTAACGGAGTCAGATTGAATTACCAAGGAAC-A-GACAACAGTGGAGCAAAAGAC--AAAGAACCGAAGTGT-
dp5	2:24810810-24810967 -	dps-mir-929	Known_mirbase	GAAGGTG-----CATGCGCCC-GATCCGAAGT-------------------------------------------------------------GCA--CGG-CAATTCCTGCAGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTATTGAGCGACTCCCTAACGGAGTCAGATTGAATTACCAAGGAAC-A-GACAACAGTGGAGCGAAAGAC--AAAGAACCGAAGTGT-
droWil2	scf2_1100000004902:9825551-9825708 -	dwi_10	confident	ATAAGTG-----CATAAGCAT-AATCTAAAGTGGCTT----------------------------------------------G-----------A--GA---ACTTCCTGCGGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTATATAAGCGACTCCCTAACGGAGTCAGATTGAATTACAAAGGAACAACAACAACAAAA-AGCCACGACC--C----ACCAAAGTGTT
droVir3	scaffold_12822:1418787-1418937 +	dvi-mir-929	Known_mirbase	TAAGATC-----CAGGC----------CAAGT-------------------------------------------------------------GCGACGCGTGAATTCCTGCCGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTT-CACGAGCGACTCCCTAACGGAGTCAGATTGAATTACAAAGGACCCA-GACAACGAGTAAAAATGTGCC--AA-GTGACAAAGTGT-
droMoj3	scaffold_6540:34020257-34020402 +	dmo_3169		ATATATA-----TACATACAT---ACATAT-----------------------------------------------------------AC--GC---TACGAGTTTCCTCATGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTTTTTAACGACTCCCTAACGGAGTCAGATTGAATTTCAGAGGACCCA-GACAACGAAGAAGCGCGAGCA---CA-------AA----
droGri2	scaffold_15074:2468178-2468293 -	dgr_3	confident	GAAAGTG-----T--GCCCC---------------------------------------------------------------------------C--GA---ACTTCCTGCTGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTAACGAGCGACTCCCTAACGGAGTCAGATTGAGTTACAAAGGACCAA-GTCAACAATG-----------------------------
droAna3	scaffold_13340:11127661-11127854 +	dan_5	confident	AAGTGAG-----AAAATGTCC---TGAAAAGTGTTCTGAGATGCAGCTTCCCCAGCCACCAACCAACCAACCAAC-----------------------CAACCACTTCCTGGCGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTAACGAGAGACTCCCTAACGGAGTCAGATTGAATTACAAAGGAGCGA-GACAACGACTACGTGGTGGCCTAAAA-------AGTGTT
droBip1	scf7180000396691:36376-36536 +			AAGGGTA-----C-----------------------TGAGATGCGGCCTTCC-------------ACCAACCCAC-----------------------CAACCACTTCCTGGCGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTAACGAGCGACTCCCTAACGGAGTCAGATTGAATTACAAAGGAGCGA-GACAACGACTAAGGGGTTGCCCAAAA-------AGTGTT
droKik1	scf7180000302634:767709-767849 +			CCAAGTG-----AGTGC--CCAAATCGAGAGTGACCC---------------------------------------GAGCAACGCCAT----------------GTTCCTGTCGGAGTTCAAATTGACTCTAGTAGGGAGTCCTTTGTACGAGCGACTCCCTAACGGAGTCAGATTGAATTACCAAGGAGAGA-GACAACAGTG-----------------------------
droFic1	scf7180000454096:1242528-1242667 +			GAACGCG-----C---------------------------------------------------------------------CGACTTTG-----A--GAACGACTTCCTGACGCAGCTCAAATTGACTCTAGTAGGGAGTCCTTTTCTTGAGCGACTCCCTAACGGAGTCAGATTGAACTTCAAAGGAGCGA-GACATCGAGGGAGCGGCTGCC----A-------AGTGCT
droEle1	scf7180000491104:1857439-1857568 +			GAGCG------------------------------------------------------------------------------------------A--GAAGGACTTCCTGGCGCAGCTCAAATTGACTCTAGTAGGGAGTCCTTTTCTCGAGCGACTCCCTAACGGAGTCAGATTGAGCTTCGAAGGAGCAA-GACATCGG-GGAGCAGCTGCC--GAA-------AGTGTT
droRho1	scf7180000777910:14045-14200 -			CAAA-TACTGTGAATTAGTCT-TAC----------------------------------------AT---------------------TACGCG-A--AAACGACTTCCTGCCGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTCATGAGCGACTCCCTAACGGAGTCAGATTGATCTACAAAGGAGAGA-GACAACAA-GGAGCAGCTGCC--AAA-------AGTGTT
droBia1	scf7180000302098:364495-364666 -			CAAA-TATAGTGAATGTACCC-AA------G-----------------------------------T--TCCTATTGTCCTTTGACATAAC----A--GAACTAAGTCCTGACGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTAATGAGCGACTCCCTAACGGAGTCAGATTGAACTTCAAAGGAGCGA-GACAACAAAGGAGCAACTGCC--AAA-------AGTGTT
droTak1	scf7180000414441:35419-35591 -			CAAA-TACAGTGAATGTGCCT-TAC----------------------------------------AT--ACCTATTGTTCCCTGACATAAG----A--GAACCAATTCCTGGCGCAGCTCAAATTGACTCTAGTAGGGAGTCCTTTCAATGAGCGACTCCCTAACGGAGTCAGATTGAACTACAAAGGACCAA-GACAACAAAGGGAAATCTTTA--AAA-------AGTGTT
droEug1	scf7180000409759:55716-55851 +			AAATAAG---T-CCTGTATCT-GATAT----A-------GA-------------------------------------------------T--G-A--TAACA-AATCCTGACGCTGTTCAAATTGACTCTAGTAGGGAGTCCTTATATCGAGCGACTCCCTAACGGAGTCAGATTGAATTTCAAAGGAGCA--AACAACAAAGGAGCA------------------------
dm3	chr3R:121049-121193 +	dme-mir-929	Known_mirbase	AAAAATC-----CATGTATGC-AATCC-------------------------------------------------ATGCCCTGACATGGC----G--GAACC-AGTCCTGGTGGAGCTCAAATTGACTCTAGTAGGGAGTCCTTT-AATGAGCGACTCCCTAACGGAGTCAGATTGAGCTGCAAAGGAGCGA-CACAACAGAGGAGCA------------------------
droSim2	3r:105559-105704 +	dsi-mir-929	Known_mirbase	TGTGATA-----C---------------------------------------------------------------GTGCCCTGGCATGGC----G--CAACC-AGTCCTGGTGAAGCTCAAATTGACTCTAGTAGGGAGTCCTTT-AATGAGCGACTCCCTAACGGAGTCAGATTGAGCTACAAAGGAGCGA-GACAACAGAGGAGCA-CTTAA--AAA-------GGTGTT
droSec2	scaffold_6:240405-240550 +	dse_4	confident	TGTGATA-----C---------------------------------------------------------------GTGCCCTGACATGGC----G--CAACC-AGTCCTGGTGAAGCTCAAATTGACTCTAGTAGGGAGTCCTTT-AATGAGCGACTCCCTAACGGAGTCAGATTGAGCTACAAAGGAGCGA-GACAACAGAGGAGCA-CTTAA--AAA-------GGTGTT
droYak3	3R:481060-481217 +	dya_11	confident	ACA-GTG-----AAAACGCTA-TAC----------------------------------------ATTA------CGTGCCTTGAAATGGC----A--AAACC-AGTCCTGGTGAAGCTCAAATTGACTCTAGTAGGGAGTCCTTT-AATGAACGACTCCCTAACGGAGTCAGATTGAGCTACAAAGGAGCGA-GACAACACAGGACCA-CTAAA--AAA----------AAA
droEre2	scaffold_4770:471008-471148 +	der_6	confident	AAAAAGC-----CATAC------------------------------------------------ATTA------CGCGCCTTGAAGTGGC----G--GAACC-AGTCCTGGTGAAGCTCAAATTGACTCTAGTAGGGAGTCCTTC-CATAAGCGACTCCCTAACGGAGTCAGATTGAGCTACAAAGGAGCGA-GACAACACAGGTGCA------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droPer2

GAAGGTG-----CATGCGCCC-GATCCGAAGT-------------------------------------------------------------GC---ACGGGATTTCCTGCAGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTATTGAGCGACTCCCTAACGGAGTCAGATTGAATTACCAAGGAAC-A-GACAACAGTGGAGCAAAAGAC--AAAGAACCGAAGTGT-	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
........................................................................................................................AAATTGACTCTAGTAGGGAGT............................................................................................	21	1	18343.00	18343	5	53	216	3913	6524	7632
........................................................................................................................AAATTGACTCTAGTAGGGAGTC...........................................................................................	22	1	14511.00	14511	5	64	54	4145	9020	1223
............................................................................................................................................................CTCCCTAACGGAGTCAGATTG........................................................	21	1	3906.00	3906	0	75	4	1277	2509	41
........................................................................................................................AAATTGACTCTAGTAGGGAGTCT..........................................................................................	23	1	1722.00	1722	0	11	9	478	1053	171
........................................................................................................................AAATTGACTCTAGTAGGGAGTCA..........................................................................................	23	1	1689.00	1689	0	8	11	478	1125	67
........................................................................................................................AAATTGACTCTAGTAGGGAG.............................................................................................	20	1	1010.00	1010	1	11	1	312	508	177
............................................................................................................................................................CTCCCTAACGGAGTCAGATTGA.......................................................	22	1	487.00	487	0	15	1	324	147	0
.........................................................................................................................AATTGACTCTAGTAGGGAGTC...........................................................................................	21	1	220.00	220	0	7	0	71	137	5
........................................................................................................................AAATTGACTCTAGTAGGGAGTCC..........................................................................................	23	1	196.00	196	0	1	0	45	124	26
..........................................................................................................................ATTGACTCTAGTAGGGAGTC...........................................................................................	20	1	179.00	179	0	2	0	5	171	1
........................................................................................................................AAATTGACTCTAGTAGGGA..............................................................................................	19	1	114.00	114	0	3	6	19	53	33
.........................................................................................................................AATTGACTCTAGTAGGGAGT............................................................................................	20	1	112.00	112	0	6	1	28	50	27
........................................................................................................................AAATTGACTCTAGTAGGGAGC............................................................................................	21	1	67.00	67	0	0	0	8	50	9
........................................................................................................................AAATTGACTCTAGTAGGGAGTT...........................................................................................	22	1	47.00	47	0	0	0	9	28	10
..........................................................................................................................ATTGACTCTAGTAGGGAGT............................................................................................	19	1	46.00	46	0	0	0	2	34	10
.............................................................................................................................................................TCCCTAACGGAGTCAGATTGA.......................................................	21	1	43.00	43	2	0	0	19	22	0
.............................................................................................................................................................TCCCTAACGGAGTCAGATTG........................................................	20	1	42.00	42	0	9	0	14	19	0
........................................................................................................................AAATTGACTCTAGTAGGGAGG............................................................................................	21	1	37.00	37	1	0	0	6	30	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTCG..........................................................................................	23	1	35.00	35	0	2	0	3	26	4
........................................................................................................................AAATTGACTCTAGTAGGGAGA............................................................................................	21	1	32.00	32	0	0	0	5	22	5
........................................................................................................................AAATTGACTCTAGTAGGGAGTA...........................................................................................	22	1	31.00	31	0	0	1	9	20	1
........................................................................................................................AAATTGACTCTAGTAGGGAGTTT..........................................................................................	23	1	27.00	27	0	1	0	5	11	10
..........................................................................................................................ATTGACTCTAGTAGGGAGTCC..........................................................................................	21	1	20.00	20	0	0	0	7	13	0
........................................................................................................................AAATTGACTCTAGTAGGG...............................................................................................	18	1	20.00	20	1	0	0	7	12	0
.......................................................................................................................CAAATTGACTCTAGTAGGGAGT............................................................................................	22	1	16.00	16	0	2	0	4	4	6
............................................................................................................................................................CTCCCTAACGGAGTCAGATT.........................................................	20	1	15.00	15	0	2	0	2	11	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTTA..........................................................................................	23	1	11.00	11	0	0	0	0	9	2
........................................................................................................................AAATTGACTCTAGTAGGGT..............................................................................................	19	1	11.00	11	0	0	0	3	4	4
............................................................................................................................................................CTCCCTAACGGAGTCAGATTGT.......................................................	22	1	9.00	9	0	0	0	4	5	0
.........................................................................................................................AATTGACTCTAGTAGGGAG.............................................................................................	19	1	9.00	9	1	1	0	2	5	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTG...........................................................................................	22	1	9.00	9	0	0	0	2	7	0
........................................................................................................................AAATTGACTCTAGTAGGT...............................................................................................	18	1	8.00	8	1	0	0	1	6	0
..........................................................................................................................ATTGACTCTAGTAGGGAGTCT..........................................................................................	21	1	8.00	8	0	0	0	1	7	0
.........................................................................................................................AATTGACTCTAGTAGGGAGTCC..........................................................................................	22	1	7.00	7	0	0	0	0	7	0
............................................................................................................................................................CTCCCTAACGGAGTCAGATTGAT......................................................	23	1	5.00	5	0	0	0	1	4	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTCTC.........................................................................................	24	1	5.00	5	0	0	0	1	4	0
.........................................................................................................................AATTGACTCTAGTAGGGAGTCT..........................................................................................	22	1	5.00	5	0	1	0	2	1	1
........................................................................................................................AAATTGACTCTAGTAGGGAA.............................................................................................	20	1	5.00	5	0	1	0	0	2	2
........................................................................................................................AAATTGACTCTAGTAGGGAGTAT..........................................................................................	23	1	5.00	5	0	0	0	0	5	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTAA..........................................................................................	23	1	4.00	4	0	0	0	1	2	1
............................................................................................................................................................CTCCCTAACGGAGTCAGATTC........................................................	21	1	4.00	4	0	0	0	1	3	0
............................................................................................................................................................CTCCCTAACGGAGTCAGATTT........................................................	21	1	4.00	4	0	0	0	1	3	0
........................................................................................................................AAATTGACTCTAGTAGGGAGAA...........................................................................................	22	1	3.00	3	0	0	0	1	2	0

dp5

GAAGGTG-----CATGCGCCC-GATCCGAAGT-------------------------------------------------------------GCA--CGG-CAATTCCTGCAGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTATTGAGCGACTCCCTAACGGAGTCAGATTGAATTACCAAGGAAC-A-GACAACAGTGGAGCGAAAGAC--AAAGAACCGAAGTGT-	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
........................................................................................................................AAATTGACTCTAGTAGGGAGT............................................................................................	21	1	7708.00	7708	1	231	179	704	887	4363	1324	0	2	17
........................................................................................................................AAATTGACTCTAGTAGGGAGTC...........................................................................................	22	1	6817.00	6817	0	423	420	714	491	4467	290	4	1	7
............................................................................................................................................................CTCCCTAACGGAGTCAGATTG........................................................	21	1	2256.00	2256	1	456	1	21	16	1685	76	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAG.............................................................................................	20	1	968.00	968	0	85	10	73	10	717	64	1	2	6
........................................................................................................................AAATTGACTCTAGTAGGGAGTCT..........................................................................................	23	1	846.00	846	0	73	50	60	46	580	32	0	0	5
........................................................................................................................AAATTGACTCTAGTAGGGAGTCA..........................................................................................	23	1	785.00	785	0	100	4	23	16	601	37	0	0	4
............................................................................................................................................................CTCCCTAACGGAGTCAGATTGA.......................................................	22	1	739.00	739	0	41	2	6	14	673	1	0	0	2
.........................................................................................................................AATTGACTCTAGTAGGGAGTC...........................................................................................	21	1	216.00	216	0	45	3	22	2	143	1	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGC............................................................................................	21	1	197.00	197	0	1	61	109	5	17	4	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTCC..........................................................................................	23	1	119.00	119	0	5	32	17	2	58	5	0	0	0
.........................................................................................................................AATTGACTCTAGTAGGGAGT............................................................................................	20	1	114.00	114	0	25	2	12	4	49	22	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGA..............................................................................................	19	1	82.00	82	0	13	1	3	6	47	10	0	1	1
.............................................................................................................................................................TCCCTAACGGAGTCAGATTG........................................................	20	1	69.00	69	0	43	0	0	0	26	0	0	0	0
.............................................................................................................................................................TCCCTAACGGAGTCAGATTGA.......................................................	21	1	54.00	54	0	9	0	2	6	35	1	0	0	1
.........................................................................................................................AATTGACTCTAGTAGGGAG.............................................................................................	19	1	32.00	32	0	7	1	3	1	19	1	0	0	0
..........................................................................................................................ATTGACTCTAGTAGGGAGTC...........................................................................................	20	1	30.00	30	0	11	2	8	0	9	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGG............................................................................................	21	1	27.00	27	0	0	3	6	6	12	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGG...............................................................................................	18	1	26.00	26	0	2	1	2	0	20	0	0	0	1
.......................................................................................................................CAAATTGACTCTAGTAGGGAGTC...........................................................................................	23	1	26.00	26	0	1	7	13	1	4	0	0	0	0
.......................................................................................................................CAAATTGACTCTAGTAGGGAGT............................................................................................	22	1	23.00	23	0	2	1	14	0	6	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTCG..........................................................................................	23	1	23.00	23	0	2	0	0	1	18	2	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTT...........................................................................................	22	1	21.00	21	0	2	0	2	1	16	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTTT..........................................................................................	23	1	17.00	17	0	2	2	2	0	9	2	0	0	0
..........................................................................................................................ATTGACTCTAGTAGGGAGT............................................................................................	19	1	17.00	17	0	3	1	11	0	1	1	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTA...........................................................................................	22	1	16.00	16	0	2	4	2	0	8	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGA............................................................................................	21	1	15.00	15	0	0	0	0	0	15	0	0	0	0
.........................................................................................................................AATTGACTCTAGTAGGGAGTCA..........................................................................................	22	1	13.00	13	0	10	0	0	0	3	0	0	0	0
............................................................................................................................................................CTCCCTAACGGAGTCAGATT.........................................................	20	1	12.00	12	0	11	0	1	0	0	0	0	0	0
............................................................................................................................................................CTCCCTAACGGAGTCAGATTGAA......................................................	23	1	11.00	11	0	5	0	1	1	4	0	0	0	0
............................................................................................................................................................CTCCCTAACGGAGTCAGATTGT.......................................................	22	1	10.00	10	0	2	0	0	0	8	0	0	0	0
.........................................................................................................................AATTGACTCTAGTAGGGAGTCT..........................................................................................	22	1	9.00	9	0	7	0	0	0	2	0	0	0	0
..........................................................................................................................ATTGACTCTAGTAGGGAGTCC..........................................................................................	21	1	7.00	7	0	0	1	1	0	5	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTTA..........................................................................................	23	1	6.00	6	0	1	0	2	0	3	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGT..............................................................................................	19	1	6.00	6	0	0	0	0	0	5	1	0	0	0
..........................................................................................................................ATTGACTCTAGTAGGGAG.............................................................................................	18	1	5.00	5	0	1	0	1	0	3	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTG...........................................................................................	22	1	5.00	5	0	0	0	0	2	3	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAT.............................................................................................	20	1	4.00	4	0	0	0	0	0	4	0	0	0	0
...............................................................................................................................................................CCTAACGGAGTCAGATTG........................................................	18	1	4.00	4	0	0	0	0	0	4	0	0	0	0
.........................................................................................................................AATTGACTCTAGTAGGGAGTCC..........................................................................................	22	1	4.00	4	0	0	0	0	0	3	1	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAA.............................................................................................	20	1	4.00	4	0	0	0	1	0	3	0	0	0	0
...........................................................................................................................TTGACTCTAGTAGGGAGT............................................................................................	18	1	4.00	4	0	0	0	2	0	1	1	0	0	0
......................................................................................................................TCAAATTGACTCTAGTAGGGAGTC...........................................................................................	24	1	4.00	4	0	0	0	2	0	2	0	0	0	0
............................................................................................................................................................CTCCCTAACGGAGTCAGATTGC.......................................................	22	1	4.00	4	0	0	0	0	0	4	0	0	0	0
.......................................................................................................................CAAATTGACTCTAGTAGGGAG.............................................................................................	21	1	3.00	3	0	1	0	0	0	2	0	0	0	0
.......................................................................................................................CAAATTGACTCTAGTAGGGAGTCT..........................................................................................	24	1	3.00	3	0	0	0	2	0	1	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTCCT.........................................................................................	24	1	3.00	3	0	0	0	1	0	1	1	0	0	0
.............................................................................................................................................................TCCCTAACGGAGTCAGATTGAA......................................................	22	1	3.00	3	0	0	0	0	1	1	1	0	0	0
...............................................................................................................................................................CCTAACGGAGTCAGATTGA.......................................................	19	1	3.00	3	0	0	0	0	0	3	0	0	0	0
............................................................................................................................................................CTCCCTAACGGAGTCAGAT..........................................................	19	1	3.00	3	0	0	1	2	0	0	0	0	0	0
.........................................................................................................................AATTGACTCTAGTAGGGA..............................................................................................	18	1	3.00	3	0	0	0	0	0	3	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGT...............................................................................................	18	1	3.00	3	0	0	0	0	0	3	0	0	0	0
...........................................................................................................................TTGACTCTAGTAGGGAGTC...........................................................................................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTAA..........................................................................................	23	1	2.00	2	0	1	0	0	0	1	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAC.............................................................................................	20	1	2.00	2	0	0	0	2	0	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGTT..............................................................................................	19	2	2.00	4	0	0	0	0	0	4	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGATC............................................................................................	21	1	2.00	2	0	0	0	2	0	0	0	0	0	0
.......................................................................................................................CAAATTGACTCTAGTAGGGAGC............................................................................................	22	1	2.00	2	0	0	1	1	0	0	0	0	0	0
..............................................................................................................................................................CCCTAACGGAGTCAGATTG........................................................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0

droWil2

ATAAGTG-----CATAAGCAT-AATCTAAAGTGGCTT----------------------------------------------G-----------A--GA---ACTTCCTGCGGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTATATAAGCGACTCCCTAACGGAGTCAGATTGAATTACAAAGGAACAACAACAACAAAA-AGCCACGACC--C----ACCAAAGTGTT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
........................................................................................................................AAATTGACTCTAGTAGGGAGT............................................................................................	21	1	97883.00	97883	487	162	3418	8392	85424
........................................................................................................................AAATTGACTCTAGTAGGGAGTC...........................................................................................	22	1	18888.00	18888	139	161	614	7645	10329
............................................................................................................................................................CTCCCTAACGGAGTCAGATTG........................................................	21	1	2505.00	2505	93	152	9	89	2162
........................................................................................................................AAATTGACTCTAGTAGGGAGTCT..........................................................................................	23	1	1953.00	1953	6	55	54	781	1057
........................................................................................................................AAATTGACTCTAGTAGGGAGTCA..........................................................................................	23	1	1464.00	1464	2	27	47	248	1140
........................................................................................................................AAATTGACTCTAGTAGGGAG.............................................................................................	20	1	843.00	843	214	24	72	48	485
.........................................................................................................................AATTGACTCTAGTAGGGAGT............................................................................................	20	1	452.00	452	2	17	11	50	372
........................................................................................................................AAATTGACTCTAGTAGGGAGTCG..........................................................................................	23	1	365.00	365	5	26	21	36	277
........................................................................................................................AAATTGACTCTAGTAGGGAGC............................................................................................	21	1	207.00	207	19	2	6	14	166
.............................................................................................................................................................TCCCTAACGGAGTCAGATTGA.......................................................	21	1	191.00	191	22	4	0	23	142
........................................................................................................................AAATTGACTCTAGTAGGGAGTCC..........................................................................................	23	1	184.00	184	2	2	10	57	113
.......................................................................................................................CAAATTGACTCTAGTAGGGAGT............................................................................................	22	1	145.00	145	0	3	7	12	123
..........................................................................................................................ATTGACTCTAGTAGGGAGT............................................................................................	19	1	128.00	128	2	1	5	15	105
............................................................................................................................................................CTCCCTAACGGAGTCAGATTGA.......................................................	22	1	88.00	88	5	19	0	29	35
........................................................................................................................AAATTGACTCTAGTAGGGA..............................................................................................	19	1	86.00	86	3	5	21	14	43
.........................................................................................................................AATTGACTCTAGTAGGGAGTC...........................................................................................	21	1	83.00	83	2	12	0	23	46
........................................................................................................................AAATTGACTCTAGTAGGGAGA............................................................................................	21	1	77.00	77	0	0	0	2	75
........................................................................................................................AAATTGACTCTAGTAGGGAGG............................................................................................	21	1	68.00	68	27	0	3	3	35
........................................................................................................................AAATTGACTCTAGTAGGGAGTA...........................................................................................	22	1	66.00	66	0	0	0	12	54
.............................................................................................................................................................TCCCTAACGGAGTCAGATTG........................................................	20	1	61.00	61	2	21	0	3	35
......................................................................................................................TCAAATTGACTCTAGTAGGGAGT............................................................................................	23	1	60.00	60	1	0	0	13	46
........................................................................................................................AAATTGACTCTAGTAGGGT..............................................................................................	19	1	47.00	47	0	0	1	14	32
........................................................................................................................AAATTGACTCTAGTAGGGAGTT...........................................................................................	22	1	32.00	32	0	1	3	3	25
........................................................................................................................AAATTGACTCTAGTAGGGAGTTT..........................................................................................	23	1	27.00	27	0	1	5	4	17
.............................................................................................................................................................TCCCTAACGGAGTCAGATTGAA......................................................	22	1	22.00	22	2	2	0	8	10
..........................................................................................................................ATTGACTCTAGTAGGGAGTC...........................................................................................	20	1	18.00	18	4	1	0	6	7
........................................................................................................................AAATTGACTCTAGTAGGGAC.............................................................................................	20	1	16.00	16	16	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGG...............................................................................................	18	1	16.00	16	1	1	0	1	13
...............................................................................................................................................................CCTAACGGAGTCAGATTGA.......................................................	19	1	15.00	15	1	0	1	1	12
............................................................................................................................................................CTCCCTAACGGAGTCAGATT.........................................................	20	1	15.00	15	6	5	0	0	4
................................................................................................................................................................CTAACGGAGTCAGATTGA.......................................................	18	1	13.00	13	5	0	0	1	7
............................................................................................................................................................CTCCCTAACGGAGTCAGATTGAA......................................................	23	1	12.00	12	3	1	0	2	6
............................................................................................................................................................CTCCCTAACGGAGTCAGAT..........................................................	19	1	11.00	11	10	1	0	0	0
...........................................................................................................................TTGACTCTAGTAGGGAGT............................................................................................	18	1	10.00	10	0	2	1	2	5
........................................................................................................................AAATTGACTCTAGTAGGGAGTAA..........................................................................................	23	1	9.00	9	0	1	0	0	8
........................................................................................................................AAATTGACTCTAGTAGGGAGTCTA.........................................................................................	24	1	9.00	9	0	0	0	5	4
........................................................................................................................AAATTGACTCTAGTAGGGAGTTA..........................................................................................	23	1	8.00	8	0	2	0	0	6
............................................................................................................................................................CTCCCTAACGGAGTCAGATTGAT......................................................	23	1	7.00	7	4	0	0	0	3
.........................................................................................................................AATTGACTCTAGTAGGGAGTCT..........................................................................................	22	1	7.00	7	0	2	0	3	2
........................................................................................................................AAATTGACTCTAGTAGGGAGTTG..........................................................................................	23	1	6.00	6	3	0	1	0	2
.......................................................................................................................CAAATTGACTCTAGTAGGGAGTC...........................................................................................	23	1	5.00	5	0	0	0	2	3
.........................................................................................................................AATTGACTCTAGTAGGGAGTCC..........................................................................................	22	1	5.00	5	0	1	0	1	3
........................................................................................................................AAATTGACTCTAGTAGGGAGTAT..........................................................................................	23	1	5.00	5	0	0	0	0	5
.........................................................................................................................AATTGACTCTAGTAGGGAGTCG..........................................................................................	22	1	4.00	4	0	3	0	0	1
........................................................................................................................AAATTGACTCTAGTAGGGAGTCAA.........................................................................................	24	1	4.00	4	0	2	0	1	1
............................................................................................................................................................CTCCCTAACGGAGTCAGATTGT.......................................................	22	1	4.00	4	2	1	0	0	1
..........................................................................................................................ATTGACTCTAGTAGGGAG.............................................................................................	18	1	4.00	4	3	0	0	1	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTGT..........................................................................................	23	1	4.00	4	2	1	0	0	1
........................................................................................................................AAATTGACTCTAGTAGGT...............................................................................................	18	1	4.00	4	0	0	0	0	4
..............................................................................................................................................................CCCTAACGGAGTCAGATTGA.......................................................	20	1	4.00	4	0	1	0	0	3
.........................................................................................................................AATTGACTCTAGTAGGGAGTCA..........................................................................................	22	1	4.00	4	0	2	0	0	2
..........................................................................................................................ATTGACTCTAGTAGGGAGTCA..........................................................................................	21	1	3.00	3	0	1	0	0	2
........................................................................................................................AAATTGACTCTAGTAGGGAT.............................................................................................	20	1	3.00	3	0	0	1	1	1
.............................................................................................................................................................TCCCTAACGGAGTCAGATTGAAA.....................................................	23	1	3.00	3	1	0	0	1	1
....................................T----------------------------------------------G-----------A--GA---ACTTCCTGCGGCAGTTC.................................................................................................................	22	1	3.00	3	2	0	0	1	0
.............................................................................................................................................................TCCCTAACGGAGTCAGATTGAAT.....................................................	23	1	3.00	3	3	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTG...........................................................................................	22	1	3.00	3	0	0	1	1	1
.............................................................................................................................................................TCCCTAACGGAGTCAGATTGG.......................................................	21	1	2.00	2	2	0	0	0	0
............................................................................................................................................................CTCCCTAACGGAGTCAGA...........................................................	18	1	2.00	2	0	2	0	0	0
............................................................................................................................................................CTCCCTAACGGAGTCAGATTGAAC.....................................................	24	1	2.00	2	2	0	0	0	0
.............................................................................................................................................................TCCCTAACGGAGTCAGATT.........................................................	19	1	2.00	2	1	0	0	0	1
............................................................................................................................................................CTCCCTAACGGAGTCAGATTA........................................................	21	1	2.00	2	0	0	0	0	2

droVir3

TAAGATC-----CAGGC----------CAAGT-------------------------------------------------------------GCGACGCGTGAATTCCTGCCGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTT-CACGAGCGACTCCCTAACGGAGTCAGATTGAATTACAAAGGACCCA-GACAACGAGTAAAAATGTGCC--AA-GTGACAAAGTGT-	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells	SRR2096013 Ovary_Strain_9_oxidized	SRR2096014 Ovary_Strain_160_oxidized	SRR2096026 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096038 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096050 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096055 Ovary_Min_43	SRR2096056 Ovary_Min_46	SRR2096057 Ovary_Min_50	SRR2096058 Ovary_Min_98	SRR2096059 Ovary_Min_164	SRR2096060 Ovary_Min_193	SRR2096061 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096072 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096079 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096080 embryo_0-2h from 15to16 day old nondysgenic mothers	SRR2096081 embryo_0-2h from 15to16 day old nondysgenic mothers
........................................................................................................................AAATTGACTCTAGTAGGGAGT............................................................................................	21	1	21160.00	21160	8	124	260	137	3	90	7	639	16	172	27	0	0	1	931	518	321	757	637	308	24	816	1002	7	0	2	3	2	54	85	21	62	0	86	0	0	0	0	2	120	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	8	9	563	8084	5209	0	0	0	0	0	0	1	35	1	4	1	0	0	0	0	0	1
........................................................................................................................AAATTGACTCTAGTAGGGAGTC...........................................................................................	22	1	13334.00	13334	2	35	373	175	0	48	6	39	10	36	11	0	0	0	1481	759	423	859	473	423	14	985	1278	9	3	1	2	5	53	59	10	47	0	38	0	0	0	1	6	83	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	3	187	4876	516	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0	0
............................................................................................................................................................CTCCCTAACGGAGTCAGATTG........................................................	21	1	7094.00	7094	5	30	379	3	0	2	0	0	0	0	0	0	0	0	522	317	147	330	574	246	4	811	767	1	0	0	1	1	5	6	1	8	0	1	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18	2869	42	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTCT..........................................................................................	23	1	3781.00	3781	0	2	77	15	3	17	0	0	1	4	1	0	0	0	568	289	181	330	197	243	1	482	661	6	1	2	5	2	12	24	1	12	0	10	0	0	0	0	7	30	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	533	44	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTCA..........................................................................................	23	1	1766.00	1766	0	0	70	3	0	4	1	1	1	0	0	0	0	0	192	134	75	170	86	76	0	179	241	0	0	1	1	3	5	5	1	2	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	477	27	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAG.............................................................................................	20	1	1607.00	1607	9	151	78	4	1	3	0	2	0	7	0	0	0	0	95	61	33	69	74	45	0	56	65	2	1	1	1	1	8	11	2	7	0	2	0	0	0	0	1	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	693	101	0	0	3	0	0	0	1	10	0	0	0	0	0	0	0	0	0
............................................................................................................................................................CTCCCTAACGGAGTCAGATTGA.......................................................	22	1	486.00	486	0	3	43	1	0	0	0	0	0	0	0	0	0	0	35	23	6	29	73	33	0	58	32	0	0	0	0	0	3	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	145	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTCC..........................................................................................	23	1	418.00	418	0	0	4	6	0	19	4	0	0	3	0	0	0	0	39	26	14	28	25	21	8	43	47	0	0	0	1	1	10	13	3	10	0	8	0	0	0	0	1	21	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	51	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTCG..........................................................................................	23	1	355.00	355	0	0	7	0	0	0	3	0	0	1	0	0	0	0	35	28	15	33	30	23	0	25	69	0	0	0	0	0	1	0	1	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	76	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................AATTGACTCTAGTAGGGAGT............................................................................................	20	1	308.00	308	0	4	31	1	1	1	0	13	0	2	0	0	0	0	5	0	4	3	6	2	0	5	6	0	0	0	0	0	2	0	0	2	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	98	113	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGG...............................................................................................	18	1	243.00	243	2	45	27	0	0	0	0	0	0	0	0	0	0	0	9	4	4	4	5	3	0	4	3	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	126	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGA..............................................................................................	19	1	225.00	225	0	7	8	2	0	0	0	0	0	0	0	0	0	0	9	5	3	5	4	4	1	6	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	118	39	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................AATTGACTCTAGTAGGGAGTC...........................................................................................	21	1	168.00	168	0	2	49	3	0	0	0	3	0	3	0	0	0	0	8	6	7	12	5	7	0	13	20	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	13	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTT...........................................................................................	22	1	115.00	115	0	0	4	0	0	0	1	1	0	1	0	0	0	0	12	6	2	13	7	4	0	9	17	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	29	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................TCCCTAACGGAGTCAGATTG........................................................	20	1	109.00	109	0	3	39	0	0	0	0	0	0	0	0	0	0	0	1	5	1	1	5	4	0	8	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	34	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGC............................................................................................	21	1	108.00	108	0	10	0	18	0	0	0	2	0	1	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	66	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTTT..........................................................................................	23	1	107.00	107	0	0	12	0	0	0	0	0	0	0	0	0	0	0	15	4	4	9	7	7	0	7	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	27	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGT..............................................................................................	19	1	91.00	91	0	1	2	0	0	0	0	4	1	1	0	0	0	0	0	0	2	1	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	52	22	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGA............................................................................................	21	1	82.00	82	0	2	3	0	0	0	0	0	0	1	0	0	0	0	3	4	0	5	2	0	0	2	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	38	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................TCCCTAACGGAGTCAGATTGA.......................................................	21	1	70.00	70	0	2	2	0	0	0	0	1	0	0	0	0	0	0	6	4	1	5	5	3	0	10	6	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	19	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGG............................................................................................	21	1	62.00	62	4	18	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	34	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................ATTGACTCTAGTAGGGAGT............................................................................................	19	1	52.00	52	0	3	8	0	0	1	0	7	0	2	0	0	0	0	0	2	0	0	1	0	1	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................CTCCCTAACGGAGTCAGATT.........................................................	20	1	48.00	48	0	11	24	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	4	3	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................CAAATTGACTCTAGTAGGGAG.............................................................................................	21	1	38.00	38	0	4	2	0	0	0	0	0	0	0	0	0	0	0	6	1	0	2	4	2	0	3	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAA.............................................................................................	20	1	36.00	36	1	4	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	3	1	1	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	16	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................CAAATTGACTCTAGTAGGGAGT............................................................................................	22	1	34.00	34	0	0	2	0	0	0	0	0	0	0	0	0	0	0	2	3	0	2	1	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	11	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTTA..........................................................................................	23	1	32.00	32	0	0	2	1	0	0	0	0	0	0	0	0	0	0	2	3	1	1	0	2	0	3	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................ATTGACTCTAGTAGGGAGTC...........................................................................................	20	1	32.00	32	0	5	11	3	0	0	0	0	0	0	0	0	0	0	1	1	3	7	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTA...........................................................................................	22	1	31.00	31	0	0	1	1	0	0	0	0	0	0	0	0	0	0	7	3	2	1	0	3	0	0	3	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTG...........................................................................................	22	1	21.00	21	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	1	0	1	2	1	0	3	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTCTA.........................................................................................	24	1	20.00	20	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	1	3	3	2	0	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................AATTGACTCTAGTAGGGAGTCT..........................................................................................	22	1	20.00	20	0	0	4	0	0	0	0	0	0	0	0	0	0	0	2	1	0	1	1	0	0	2	4	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................CAAATTGACTCTAGTAGGG...............................................................................................	19	1	20.00	20	0	4	1	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	3	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGT...............................................................................................	18	2	18.50	37	0	14	0	0	0	0	0	0	0	0	0	0	0	0	1	1	2	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................AATTGACTCTAGTAGGGAGTCC..........................................................................................	22	1	18.00	18	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	0	0	0	0	1	3	0	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTTG..........................................................................................	23	1	18.00	18	0	3	1	0	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	0	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAC.............................................................................................	20	1	16.00	16	3	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................AATTGACTCTAGTAGGGAG.............................................................................................	19	1	15.00	15	0	0	5	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................CTCCCTAACGGAGTCAGATTGAA......................................................	23	1	14.00	14	0	0	6	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTCTG.........................................................................................	24	1	13.00	13	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	1	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................CCTAACGGAGTCAGATTG........................................................	18	1	13.00	13	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	3	0	1	1	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................CAAATTGACTCTAGTAGG................................................................................................	18	1	11.00	11	0	6	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................CTCCCTAACGGAGTCAGATTGAT......................................................	23	1	11.00	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	3	0	1	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................AATTGACTCTAGTAGGGAGTCA..........................................................................................	22	1	10.00	10	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................CTCCCTAACGGAGTCAGATTT........................................................	21	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAT.............................................................................................	20	1	9.00	9	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................CAAATTGACTCTAGTAGGGAGTC...........................................................................................	23	1	9.00	9	0	0	1	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGA...............................................................................................	18	1	8.00	8	0	3	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................CTCCCTAACGGAGTCAGATTA........................................................	21	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................ATTGACTCTAGTAGGGAGTCC..........................................................................................	21	1	7.00	7	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	1	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................CTCCCTAACGGAGTCAGATTGT.......................................................	22	1	7.00	7	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................CTCCCTAACGGAGTCAGATTGC.......................................................	22	1	7.00	7	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................TTGACTCTAGTAGGGAGTC...........................................................................................	19	1	7.00	7	0	1	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................CTCCCTAACGGAGTCAGAT..........................................................	19	1	7.00	7	1	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAAA............................................................................................	21	1	7.00	7	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTCAA.........................................................................................	24	1	6.00	6	0	0	0	1	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................CAAATTGACTCTAGTAGGGAGTCT..........................................................................................	24	1	6.00	6	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................ATTGACTCTAGTAGGGAGTCT..........................................................................................	21	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................CTCCCTAACGGAGTCAGATTC........................................................	21	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTGT..........................................................................................	23	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGC...............................................................................................	18	1	6.00	6	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTCCT.........................................................................................	24	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................TCCCTAACGGAGTCAGATT.........................................................	19	1	5.00	5	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................CAAATTGACTCTAGTAGGGA..............................................................................................	20	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGG..............................................................................................	19	1	5.00	5	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTCCA.........................................................................................	24	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................CAAATTGACTCTAGTAGGGAGTTT..........................................................................................	24	1	5.00	5	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................ATTGACTCTAGTAGGGAG.............................................................................................	18	1	5.00	5	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTCTC.........................................................................................	24	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTAA..........................................................................................	23	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

ATATATA-----TACATACAT---ACATAT-----------------------------------------------------------AC--GC---TACGAGTTTCCTCATGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTTTTTAACGACTCCCTAACGGAGTCAGATTGAATTTCAGAGGACCCA-GACAACGAAGAAGCGCGAGCA---CA-------AA----	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
........................................................................................................................AAATTGACTCTAGTAGGGAGT............................................................................................	21	1	17995.00	17995	242	347	4258	7736	349	5063
........................................................................................................................AAATTGACTCTAGTAGGGAGTC...........................................................................................	22	1	12606.00	12606	350	227	3229	6477	1483	840
............................................................................................................................................................CTCCCTAACGGAGTCAGATTG........................................................	21	1	7028.00	7028	425	5	2801	3708	0	89
........................................................................................................................AAATTGACTCTAGTAGGGAGTCT..........................................................................................	23	1	1765.00	1765	99	9	453	979	124	101
........................................................................................................................AAATTGACTCTAGTAGGGAG.............................................................................................	20	1	755.00	755	64	1	196	369	19	106
........................................................................................................................AAATTGACTCTAGTAGGGAGTCA..........................................................................................	23	1	515.00	515	24	2	172	293	7	17
........................................................................................................................AAATTGACTCTAGTAGGGAGTCC..........................................................................................	23	1	252.00	252	7	4	61	77	92	11
.......................................................................................................................CAAATTGACTCTAGTAGGGAGT............................................................................................	22	1	238.00	238	21	0	37	75	12	93
............................................................................................................................................................CTCCCTAACGGAGTCAGATTGA.......................................................	22	1	190.00	190	46	3	47	86	7	1
.............................................................................................................................................................TCCCTAACGGAGTCAGATTGA.......................................................	21	1	141.00	141	13	4	53	67	3	1
........................................................................................................................AAATTGACTCTAGTAGGGAGTCG..........................................................................................	23	1	120.00	120	9	1	34	69	0	7
........................................................................................................................AAATTGACTCTAGTAGGGAGC............................................................................................	21	1	116.00	116	0	1	17	22	71	5
.............................................................................................................................................................TCCCTAACGGAGTCAGATTG........................................................	20	1	112.00	112	42	0	33	35	0	2
.........................................................................................................................AATTGACTCTAGTAGGGAGTC...........................................................................................	21	1	109.00	109	41	2	11	32	22	1
........................................................................................................................AAATTGACTCTAGTAGGGA..............................................................................................	19	1	104.00	104	11	1	30	39	0	23
.........................................................................................................................AATTGACTCTAGTAGGGAGT............................................................................................	20	1	89.00	89	15	0	15	40	2	17
..........................................................................................................................ATTGACTCTAGTAGGGAGTC...........................................................................................	20	1	63.00	63	7	0	10	27	19	0
............................................................................................................................................................CTCCCTAACGGAGTCAGATT.........................................................	20	1	56.00	56	20	0	15	19	0	2
........................................................................................................................AAATTGACTCTAGTAGGGAGTTT..........................................................................................	23	1	56.00	56	4	0	18	28	1	5
..........................................................................................................................ATTGACTCTAGTAGGGAGT............................................................................................	19	1	46.00	46	6	0	12	18	3	7
.......................................................................................................................CAAATTGACTCTAGTAGGGAGTC...........................................................................................	23	1	45.00	45	2	1	3	5	33	1
........................................................................................................................AAATTGACTCTAGTAGGGAGTT...........................................................................................	22	1	43.00	43	0	1	14	23	1	4
........................................................................................................................AAATTGACTCTAGTAGGGAGG............................................................................................	21	1	39.00	39	0	1	11	24	1	2
........................................................................................................................AAATTGACTCTAGTAGGG...............................................................................................	18	1	32.00	32	6	0	9	15	2	0
............................................................................................................................................................CTCCCTAACGGAGTCAGATTGT.......................................................	22	1	26.00	26	1	0	9	14	1	1
........................................................................................................................AAATTGACTCTAGTAGGGAGTTA..........................................................................................	23	1	24.00	24	0	0	5	15	1	3
...........................................................................................................................................................ACTCCCTAACGGAGTCAGATTGA.......................................................	23	1	24.00	24	13	0	1	8	2	0
........................................................................................................................AAATTGACTCTAGTAGGGT..............................................................................................	19	1	24.00	24	0	0	3	13	0	8
........................................................................................................................AAATTGACTCTAGTAGGGAGTA...........................................................................................	22	1	23.00	23	0	0	5	14	4	0
............................................................................................................................................................CTCCCTAACGGAGTCAGATTT........................................................	21	1	19.00	19	0	0	15	4	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGA............................................................................................	21	1	18.00	18	1	0	5	9	1	2
..........................................................................................................................ATTGACTCTAGTAGGGAGTCT..........................................................................................	21	1	14.00	14	0	0	7	6	1	0
...........................................................................................................................................................ACTCCCTAACGGAGTCAGATTG........................................................	22	1	14.00	14	9	0	3	2	0	0
...........................................................................................................................TTGACTCTAGTAGGGAGTC...........................................................................................	19	1	12.00	12	2	0	3	0	7	0
.........................................................................................................................AATTGACTCTAGTAGGGAGTCC..........................................................................................	22	1	12.00	12	3	0	1	6	2	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTTG..........................................................................................	23	1	12.00	12	1	0	5	6	0	0
.........................................................................................................................AATTGACTCTAGTAGGGAGTCT..........................................................................................	22	1	12.00	12	8	0	0	3	1	0
............................................................................................................................................................CTCCCTAACGGAGTCAGATTGAA......................................................	23	1	11.00	11	5	0	2	3	1	0
..........................................................................................................................ATTGACTCTAGTAGGGAGTCC..........................................................................................	21	1	11.00	11	0	0	6	4	0	1
............................................................................................................................................................CTCCCTAACGGAGTCAGATTA........................................................	21	1	10.00	10	0	0	6	4	0	0
............................................................................................................................................................CTCCCTAACGGAGTCAGATTGAT......................................................	23	1	10.00	10	0	0	4	6	0	0
.........................................................................................................................AATTGACTCTAGTAGGGAG.............................................................................................	19	1	9.00	9	6	0	1	2	0	0
........................................................................................................................AAATTGACTCTAGTAGGT...............................................................................................	18	1	7.00	7	0	0	4	3	0	0
...........................................................................................................................TTGACTCTAGTAGGGAGT............................................................................................	18	1	6.00	6	1	0	1	1	1	2
........................................................................................................................AAATTGACTCTAGTAGGGAT.............................................................................................	20	1	6.00	6	0	0	2	3	0	1
........................................................................................................................AAATTGACTCTAGTAGGGAGTCTA.........................................................................................	24	1	6.00	6	1	0	1	4	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTG...........................................................................................	22	1	5.00	5	0	1	0	3	1	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTGT..........................................................................................	23	1	5.00	5	0	0	5	0	0	0
.......................................................................................................................CAAATTGACTCTAGTAGGGAGTCT..........................................................................................	24	1	5.00	5	1	0	1	0	3	0
............................................................................................................................................................CTCCCTAACGGAGTCAGAT..........................................................	19	1	5.00	5	1	0	0	1	3	0
.............................................................................................................................................................TCCCTAACGGAGTCAGATT.........................................................	19	1	4.00	4	0	0	2	2	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAA.............................................................................................	20	1	4.00	4	1	0	1	1	0	1
........................................................................................................................AAATTGACTCTAGTAGGGAGGA...........................................................................................	22	1	4.00	4	0	0	1	1	2	0
..............................................................................................................................................................CCCTAACGGAGTCAGATTG........................................................	19	1	4.00	4	2	0	1	1	0	0
............................................................................................................................................................CTCCCTAACGGAGTCAGATTC........................................................	21	1	4.00	4	1	0	0	3	0	0
.........................................................................................................................AATTGACTCTAGTAGGGAGTCA..........................................................................................	22	1	4.00	4	3	0	1	0	0	0

droGri2

GAAAGTG-----T--GCCCC---------------------------------------------------------------------------C--GA---ACTTCCTGCTGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTAACGAGCGACTCCCTAACGGAGTCAGATTGAGTTACAAAGGACCAA-GTCAACAATG-----------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
........................................................................................................................AAATTGACTCTAGTAGGGAGT............................................................................................	21	1	3522.00	3522	216	3306
........................................................................................................................AAATTGACTCTAGTAGGGAGTC...........................................................................................	22	1	739.00	739	264	475
........................................................................................................................AAATTGACTCTAGTAGGGAG.............................................................................................	20	1	108.00	108	50	58
........................................................................................................................AAATTGACTCTAGTAGGGAGTCT..........................................................................................	23	1	69.00	69	36	33
.........................................................................................................................AATTGACTCTAGTAGGGAGT............................................................................................	20	1	63.00	63	20	43
.........................................................................................................................AATTGACTCTAGTAGGGAGTC...........................................................................................	21	1	37.00	37	33	4
........................................................................................................................AAATTGACTCTAGTAGGGA..............................................................................................	19	1	19.00	19	4	15
............................................................................................................................................................CTCCCTAACGGAGTCAGATTG........................................................	21	1	19.00	19	16	3
........................................................................................................................AAATTGACTCTAGTAGGGAGTCC..........................................................................................	23	1	19.00	19	12	7
........................................................................................................................AAATTGACTCTAGTAGGGAGTCA..........................................................................................	23	1	16.00	16	9	7
.......................................................................................................................CAAATTGACTCTAGTAGGGAGT............................................................................................	22	1	15.00	15	1	14
............................................................................................................................................................CTCCCTAACGGAGTCAGATTGA.......................................................	22	1	12.00	12	11	1
..........................................................................................................................ATTGACTCTAGTAGGGAGT............................................................................................	19	1	10.00	10	3	7
........................................................................................................................AAATTGACTCTAGTAGGGAGTT...........................................................................................	22	1	8.00	8	1	7
.........................................................................................................................AATTGACTCTAGTAGGGAG.............................................................................................	19	1	7.00	7	4	3
........................................................................................................................AAATTGACTCTAGTAGGGAGTTT..........................................................................................	23	1	5.00	5	3	2
........................................................................................................................AAATTGACTCTAGTAGGGT..............................................................................................	19	1	4.00	4	1	3
........................................................................................................................AAATTGACTCTAGTAGGGAGC............................................................................................	21	1	4.00	4	0	4
........................................................................................................................AAATTGACTCTAGTAGGG...............................................................................................	18	1	3.00	3	3	0
..........................................................................................................................ATTGACTCTAGTAGGGAGTC...........................................................................................	20	1	3.00	3	2	1
.......................................................................................................................CAAATTGACTCTAGTAGGGAGTC...........................................................................................	23	1	3.00	3	2	1
............................................................................................................................................................CTCCCTAACGGAGTCAGATT.........................................................	20	1	2.00	2	2	0
...........................................................................................................................TTGACTCTAGTAGGGAGTC...........................................................................................	19	1	2.00	2	1	1
........................................................................................................................AAATTGACTCTAGTAGGGAGTA...........................................................................................	22	1	2.00	2	1	1
.............................................................................................................................................................TCCCTAACGGAGTCAGATTG........................................................	20	1	2.00	2	1	1
........................................................................................................................AAATTGACTCTAGTAGGGAGTCG..........................................................................................	23	1	2.00	2	2	0
.............................................................................................................................................................TCCCTAACGGAGTCAGATTGA.......................................................	21	1	2.00	2	1	1
........................................................................................................................AAATTGACTCTAGTAGGGAA.............................................................................................	20	1	2.00	2	0	2
...........................................................................................................................TTGACTCTAGTAGGGAGT............................................................................................	18	1	2.00	2	1	1
........................................................................................................................AAATTGACTCTAGTAGGGAGA............................................................................................	21	1	1.00	1	0	1
.........................................................................................................................AATTGACTCTAGTAGGGAGTCCT.........................................................................................	23	1	1.00	1	1	0
......................................................................................................................TCAAATTGACTCTAGTAGGGAGTC...........................................................................................	24	1	1.00	1	0	1
............................................................................................................................................................CTCCCTAACGGAGTCAGATTGC.......................................................	22	1	1.00	1	1	0
.............................................................................................................................................................TCCCTAACGGAGTCAGATTGAAA.....................................................	23	1	1.00	1	1	0
............................................................................................................................................................CTCCCTAACGGAGTCAGA...........................................................	18	1	1.00	1	1	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTCCA.........................................................................................	24	1	1.00	1	1	0
..........................................................................................................................ATTGACTCTAGTAGGGAGTCT..........................................................................................	21	1	1.00	1	1	0
.............................................................................................................................................................TCCCTAACGGAGTCAGATTGAG......................................................	22	1	1.00	1	0	1
...........................................................................................................................TTGACTCTAGTAGGGAGTCT..........................................................................................	20	1	1.00	1	1	0
.........................................................................................................................AATTGACTCTAGTAGGGAGTCA..........................................................................................	22	1	1.00	1	1	0
............................................................................................................................................................CTCCCTAACGGAGTCAGATTGAG......................................................	23	1	1.00	1	0	1
.......................................................................................................................CAAATTGACTCTAGTAGGGA..............................................................................................	20	1	1.00	1	1	0
.........................................................................................................................AATTGACTCTAGTAGGGAGTCT..........................................................................................	22	1	1.00	1	1	0

droAna3

AAGTGAG-----AAAATGTCC---TGAAAAGTGTTCTGAGATGCAGCTTCCCCAGCCACCAACCAACCAACCAAC-----------------------CAACCACTTCCTGGCGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTAACGAGAGACTCCCTAACGGAGTCAGATTGAATTACAAAGGAGCGA-GACAACGACTACGTGGTGGCCTAAAA-------AGTGTT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
........................................................................................................................AAATTGACTCTAGTAGGGAGT............................................................................................	21	1	48433.00	48433	61	108	103	4399	5649	38113
........................................................................................................................AAATTGACTCTAGTAGGGAGTC...........................................................................................	22	1	14519.00	14519	55	180	48	4435	1114	8687
............................................................................................................................................................CTCCCTAACGGAGTCAGATTG........................................................	21	1	5341.00	5341	362	1	2	1684	46	3246
........................................................................................................................AAATTGACTCTAGTAGGGAGTCA..........................................................................................	23	1	3204.00	3204	14	3	2	836	108	2241
........................................................................................................................AAATTGACTCTAGTAGGGAGTCT..........................................................................................	23	1	1174.00	1174	8	17	4	373	91	681
........................................................................................................................AAATTGACTCTAGTAGGGAG.............................................................................................	20	1	963.00	963	17	5	0	403	162	376
.........................................................................................................................AATTGACTCTAGTAGGGAGT............................................................................................	20	1	830.00	830	3	0	0	60	119	648
........................................................................................................................AAATTGACTCTAGTAGGGAGTCG..........................................................................................	23	1	604.00	604	11	0	1	177	59	356
............................................................................................................................................................CTCCCTAACGGAGTCAGATTGA.......................................................	22	1	593.00	593	31	0	0	518	2	42
........................................................................................................................AAATTGACTCTAGTAGGGT..............................................................................................	19	1	366.00	366	0	0	0	25	72	269
........................................................................................................................AAATTGACTCTAGTAGGGAGA............................................................................................	21	1	340.00	340	0	0	0	18	65	257
..........................................................................................................................ATTGACTCTAGTAGGGAGT............................................................................................	19	1	315.00	315	1	0	0	13	10	291
........................................................................................................................AAATTGACTCTAGTAGGGAGTTT..........................................................................................	23	1	297.00	297	6	0	1	99	36	155
........................................................................................................................AAATTGACTCTAGTAGGGA..............................................................................................	19	1	252.00	252	4	0	2	83	59	104
........................................................................................................................AAATTGACTCTAGTAGGGAGTTA..........................................................................................	23	1	245.00	245	4	0	0	88	24	129
........................................................................................................................AAATTGACTCTAGTAGGG...............................................................................................	18	1	220.00	220	11	1	0	107	2	99
........................................................................................................................AAATTGACTCTAGTAGGGAGC............................................................................................	21	1	191.00	191	0	20	0	26	32	113
........................................................................................................................AAATTGACTCTAGTAGGT...............................................................................................	18	1	155.00	155	0	0	0	59	1	95
.........................................................................................................................AATTGACTCTAGTAGGGAGTC...........................................................................................	21	1	155.00	155	5	3	0	85	3	59
........................................................................................................................AAATTGACTCTAGTAGGGAGTT...........................................................................................	22	1	117.00	117	0	0	0	49	13	55
........................................................................................................................AAATTGACTCTAGTAGGGAGTCC..........................................................................................	23	1	84.00	84	0	11	1	22	6	44
.............................................................................................................................................................TCCCTAACGGAGTCAGATTG........................................................	20	1	83.00	83	38	0	0	12	0	33
........................................................................................................................AAATTGACTCTAGTAGGGAGG............................................................................................	21	1	80.00	80	0	0	0	23	20	37
........................................................................................................................AAATTGACTCTAGTAGGGAGTTG..........................................................................................	23	1	73.00	73	1	0	0	27	15	30
.............................................................................................................................................................TCCCTAACGGAGTCAGATTGA.......................................................	21	1	63.00	63	8	3	0	16	0	36
........................................................................................................................AAATTGACTCTAGTAGGGAGTA...........................................................................................	22	1	50.00	50	0	1	0	17	1	31
............................................................................................................................................................CTCCCTAACGGAGTCAGATTT........................................................	21	1	48.00	48	0	0	0	3	1	44
............................................................................................................................................................CTCCCTAACGGAGTCAGATT.........................................................	20	1	43.00	43	16	0	0	22	0	5
.......................................................................................................................CAAATTGACTCTAGTAGGGAGT............................................................................................	22	1	28.00	28	1	1	1	2	12	11
..........................................................................................................................ATTGACTCTAGTAGGGAGTC...........................................................................................	20	1	21.00	21	0	0	0	16	1	4
........................................................................................................................AAATTGACTCTAGTAGGGAGTAT..........................................................................................	23	1	15.00	15	0	0	0	5	0	10
........................................................................................................................AAATTGACTCTAGTAGGGAGTG...........................................................................................	22	1	14.00	14	0	0	0	7	1	6
.........................................................................................................................AATTGACTCTAGTAGGGAG.............................................................................................	19	1	14.00	14	0	0	0	8	0	6
........................................................................................................................AAATTGACTCTAGTAGGGAGTGT..........................................................................................	23	1	13.00	13	0	0	0	9	3	1
........................................................................................................................AAATTGACTCTAGTAGGGAT.............................................................................................	20	1	13.00	13	0	0	0	5	2	6
........................................................................................................................AAATTGACTCTAGTAGGGAGTAA..........................................................................................	23	1	12.00	12	1	0	0	3	1	7
............................................................................................................................................................CTCCCTAACGGAGTCAGATTC........................................................	21	1	11.00	11	0	0	0	4	0	7
.......................................................................................................................CAAATTGACTCTAGTAGGGAGTC...........................................................................................	23	1	10.00	10	0	3	0	1	1	5
............................................................................................................................................................CTCCCTAACGGAGTCAGATTA........................................................	21	1	9.00	9	0	0	0	0	0	9
.........................................................................................................................AATTGACTCTAGTAGGGA..............................................................................................	18	1	8.00	8	3	0	0	4	0	1
............................................................................................................................................................CTCCCTAACGGAGTCAGATTGAA......................................................	23	1	8.00	8	2	1	0	3	0	2
................................................................................................................................................................CTAACGGAGTCAGATTGA.......................................................	18	1	8.00	8	0	0	0	2	0	6
........................................................................................................................AAATTGACTCTAGTAGG................................................................................................	17	1	8.00	8	0	0	0	8	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAA.............................................................................................	20	1	7.00	7	1	0	0	5	1	0
............................................................................................................................................................CTCCCTAACGGAGTCAGATTGAT......................................................	23	1	7.00	7	0	0	0	4	0	3
...............................................................................................................................................................CCTAACGGAGTCAGATTGA.......................................................	19	1	7.00	7	0	0	0	0	0	7
...........................................................................................................................TTGACTCTAGTAGGGAGT............................................................................................	18	1	6.00	6	0	0	0	0	1	5
.........................................................................................................................AATTGACTCTAGTAGGGAGTCA..........................................................................................	22	1	6.00	6	1	0	0	1	0	4
............................................................................................................................................................CTCCCTAACGGAGTCAGATTGC.......................................................	22	1	6.00	6	0	0	0	6	0	0
.........................................................................................................................AATTGACTCTAGTAGGGAGTCT..........................................................................................	22	1	6.00	6	1	1	0	1	1	2
........................................................................................................................AAATTGACTCTAGTAGGGAGTGA..........................................................................................	23	1	6.00	6	1	0	0	3	0	2
............................................................................................................................................................CTCCCTAACGGAGTCAGATTGT.......................................................	22	1	6.00	6	1	0	0	3	0	2
..........................................................................................................................ATTGACTCTAGTAGGGAGTCT..........................................................................................	21	1	5.00	5	0	0	0	4	0	1
.......................................................................................................................CAAATTGACTCTAGTAGGG...............................................................................................	19	1	5.00	5	1	0	0	1	1	2
........................................................................................................................AAATTGACTCTAGTAGGTT..............................................................................................	19	1	5.00	5	0	0	0	2	0	3
........................................................................................................................AAATTGACTCTAGTAGGAGT.............................................................................................	20	10	4.00	40	0	0	0	3	2	35

droBip1

AAGGGTA-----C-----------------------TGAGATGCGGCCTTCC-------------ACCAACCCAC-----------------------CAACCACTTCCTGGCGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTAACGAGCGACTCCCTAACGGAGTCAGATTGAATTACAAAGGAGCGA-GACAACGACTAAGGGGTTGCCCAAAA-------AGTGTT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CCAAGTG-----AGTGC--CCAAATCGAGAGTGACCC---------------------------------------GAGCAACGCCAT----------------GTTCCTGTCGGAGTTCAAATTGACTCTAGTAGGGAGTCCTTTGTACGAGCGACTCCCTAACGGAGTCAGATTGAATTACCAAGGAGAGA-GACAACAGTG-----------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GAACGCG-----C---------------------------------------------------------------------CGACTTTG-----A--GAACGACTTCCTGACGCAGCTCAAATTGACTCTAGTAGGGAGTCCTTTTCTTGAGCGACTCCCTAACGGAGTCAGATTGAACTTCAAAGGAGCGA-GACATCGAGGGAGCGGCTGCC----A-------AGTGCT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GAGCG------------------------------------------------------------------------------------------A--GAAGGACTTCCTGGCGCAGCTCAAATTGACTCTAGTAGGGAGTCCTTTTCTCGAGCGACTCCCTAACGGAGTCAGATTGAGCTTCGAAGGAGCAA-GACATCGG-GGAGCAGCTGCC--GAA-------AGTGTT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CAAA-TACTGTGAATTAGTCT-TAC----------------------------------------AT---------------------TACGCG-A--AAACGACTTCCTGCCGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTCATGAGCGACTCCCTAACGGAGTCAGATTGATCTACAAAGGAGAGA-GACAACAA-GGAGCAGCTGCC--AAA-------AGTGTT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CAAA-TATAGTGAATGTACCC-AA------G-----------------------------------T--TCCTATTGTCCTTTGACATAAC----A--GAACTAAGTCCTGACGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTAATGAGCGACTCCCTAACGGAGTCAGATTGAACTTCAAAGGAGCGA-GACAACAAAGGAGCAACTGCC--AAA-------AGTGTT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CAAA-TACAGTGAATGTGCCT-TAC----------------------------------------AT--ACCTATTGTTCCCTGACATAAG----A--GAACCAATTCCTGGCGCAGCTCAAATTGACTCTAGTAGGGAGTCCTTTCAATGAGCGACTCCCTAACGGAGTCAGATTGAACTACAAAGGACCAA-GACAACAAAGGGAAATCTTTA--AAA-------AGTGTT	Size	Hit Count	Total Norm	Total
No Reads

droEug1

AAATAAG---T-CCTGTATCT-GATAT----A-------GA-------------------------------------------------T--G-A--TAACA-AATCCTGACGCTGTTCAAATTGACTCTAGTAGGGAGTCCTTATATCGAGCGACTCCCTAACGGAGTCAGATTGAATTTCAAAGGAGCA--AACAACAAAGGAGCA------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

AAAAATC-----CATGTATGC-AATCC-------------------------------------------------ATGCCCTGACATGGC----G--GAACC-AGTCCTGGTGGAGCTCAAATTGACTCTAGTAGGGAGTCCTTT-AATGAGCGACTCCCTAACGGAGTCAGATTGAGCTGCAAAGGAGCGA-CACAACAGAGGAGCA------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
........................................................................................................................AAATTGACTCTAGTAGGGAGT............................................................................................	21	1	991581.00	991581	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	2	0	4	0	0	5	4	18	0	0	100	32	221	88	678	547	652	26	19	0	36	66	26	12	9	59	11	44	8	139	8	41	8	24	30	83	12	16	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	4	1	0	0	0	0	0	1	0	0	1	8	1	0	33	1	6	0	0	2	2	74	0	0	0	0	0	0	0	0	0	0	0	0	3	13	41	242	1	125	2	34	34	116	6	11	2	10	15	0	0	0	0	0	0	1	0	0	0	79	14	29	38	1	39	34	50	39	52	3600	42	34	32	14	0	0	0	0	0	18	4	5	1	10	29	431	711	0	249	465	249	406	809	767	598	110	276	233	391	16	41	5	7	12	8	1282	117	59	157	47	29	0	0	100	5	276	22	0	0	0	0	0	24	83	10	0	3	4	0	0	73	120	44	210	2646	1094	1175	1	6	11	69	4	9	1	103	3	0	0	3	0	1	0	0	444	359	14	716	6135	241	313	273	405	2590	11944	16	2938	16247	88	192	242	187	10595	4777	88	41	72	18	30	18	11	1280	28	1107	59	59	7	2	237	1441	69	337	103	628	48	277	23	77	2743	125	1320	28924	29618	25428	42541	92	3835	6605	3211	37	3897	130	485	127	410	14054	1695	21846	18410	1369	2067	103	1472	2125	481	5086	363	17288	665	5645	10889	1426	6177	1536	16	53269	411255	55566	16351	37485	29627	24842	979	174	12670	602	180	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTC...........................................................................................	22	1	142586.00	142586	0	0	0	0	5	0	0	0	0	0	0	1	0	0	3	0	0	2	2	0	6	6	10	0	0	32	15	86	31	294	1258	1438	13	7	0	16	27	13	1	5	25	12	16	21	61	12	7	7	9	47	37	10	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	2	9	5	0	0	1	0	0	0	0	0	0	4	1	2	40	3	6	0	0	10	8	192	1	2	0	0	0	0	1	1	1	0	3	0	0	1	122	10	3	5	0	3	7	23	1	37	5	20	29	0	0	0	0	0	0	0	0	0	0	50	8	20	0	2	13	21	18	36	15	1536	10	18	12	4	0	0	0	0	0	8	0	0	0	5	0	882	958	0	563	159	97	401	1670	325	1371	33	382	115	564	37	23	2	0	0	0	1112	22	28	15	17	1	0	0	38	0	54	5	0	0	0	0	0	35	48	0	0	2	0	0	1	8	7	4	70	348	408	404	1	4	20	83	0	0	2	182	0	0	0	1	11	4	0	0	1926	1485	4	215	1431	56	114	48	293	631	1545	3	596	880	9	18	22	19	889	1602	40	24	44	15	6	8	8	452	17	504	64	34	2	4	111	655	23	158	44	248	13	122	5	20	1725	53	514	6132	8079	4945	10648	120	6728	3108	1488	8	558	50	185	65	185	3916	661	6762	5866	146	704	60	592	461	49	729	51	6039	85	614	732	160	2163	101	1	2953	25601	2189	925	2075	1398	1293	39	11	689	103	20	0
............................................................................................................................................................CTCCCTAACGGAGTCAGATTG........................................................	21	1	43028.00	43028	0	0	0	0	73	2	0	0	0	1	0	2	3	0	3	0	0	2	3	0	0	0	1	3	0	11	3	6	18	19	539	447	6	4	0	1	0	0	0	0	0	0	1	0	1	0	0	0	0	1	1	1	1	0	0	0	37	12	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	2	1	0	101	2	0	0	0	0	0	0	4	3	18	179	0	17	592	21	41	1	0	12	14	1376	10	1	5	6	0	3	7	4	5	4	7	4	24	2	48	16	1	7	0	11	10	22	2	37	12	58	34	0	0	0	0	0	0	1	0	0	0	2	0	1	0	0	0	0	0	0	0	11	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	406	366	0	177	12	7	342	526	22	583	21	200	10	415	29	0	0	0	0	0	1163	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	3	8	2	0	0	0	1	0	0	1	0	5	0	0	0	0	0	0	0	0	48	42	0	166	2007	59	54	5	26	426	1712	0	238	216	0	2	8	4	791	227	4	2	4	5	1	2	1	24	8	58	4	4	2	0	2	16	1	6	2	9	4	7	3	2	107	0	62	4021	5083	5618	8484	2	119	220	98	1	50	1	1	0	3	345	15	330	211	3	24	0	1	3	1	9	1	63	2	8	26	5	13	1	0	61	3201	105	40	71	49	63	4	0	32	4	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAG.............................................................................................	20	1	25804.00	25804	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	1	1	0	1	0	3	0	17	36	106	138	175	9	5	1	1	3	0	1	0	5	1	3	0	13	1	4	1	1	2	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	1	5	0	1	13	0	8	0	0	0	0	83	1	0	0	0	0	0	0	0	1	0	1	0	0	6	207	31	2	15	0	16	5	25	0	23	2	20	16	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	2	2	4	1	5	195	0	4	0	2	0	0	0	0	0	2	0	0	0	0	0	436	2168	0	286	44	20	176	217	128	154	39	315	240	541	41	0	0	0	0	0	528	36	1	40	0	0	0	0	21	0	22	0	0	0	0	0	0	0	7	0	0	1	0	0	0	6	0	0	4	185	143	99	0	3	2	17	1	1	0	17	2	0	0	3	0	0	0	0	34	20	1	26	179	9	6	9	2	118	315	1	86	153	2	0	5	1	95	177	1	0	2	0	2	0	1	260	4	112	9	4	1	1	17	127	1	7	8	37	3	15	3	2	69	8	106	1148	1189	1032	1631	1	78	377	225	0	242	11	26	11	18	492	32	960	912	7	88	4	64	102	1	47	2	107	8	63	155	10	37	8	0	741	4212	909	219	519	317	348	6	0	210	8	2	0
........................................................................................................................AAATTGACTCTAGTAGGGT..............................................................................................	19	1	16051.00	16051	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	5	7	0	4	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	20	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	31	73	0	13	37	31	0	13	50	0	9	23	136	0	11	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	1	3	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	1	1	46	1	0	1	0	3	196	0	15	11	0	0	0	0	0	9	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	1	296	233	443	715	0	0	9	3	0	12	0	0	0	1	18	2	40	78	0	0	0	0	3	1	5	0	35	2	27	25	3	3	11	0	689	11850	307	97	88	105	140	13	0	19	0	0	0
.........................................................................................................................AATTGACTCTAGTAGGGAGT............................................................................................	20	1	14181.00	14181	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	5	2	7	0	32	18	12	1	0	0	0	0	0	0	0	0	0	0	2	1	0	1	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	6	0	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	1	1	0	0	0	34	1	0	0	1	0	0	0	0	0	1	0	0	0	0	0	7	26	0	6	27	8	7	16	36	18	3	8	11	6	0	0	0	0	1	1	19	2	2	2	1	0	0	0	1	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	13	5	2	12	9	10	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	3	1	5	4	40	5	4	7	1	14	139	0	15	581	2	14	4	8	114	212	5	3	1	1	0	1	1	17	1	28	0	5	2	0	2	12	2	0	1	8	0	5	3	2	134	8	57	307	343	367	486	1	23	41	29	0	33	1	5	2	7	107	80	154	188	97	48	1	9	14	16	206	7	731	38	289	334	24	200	61	0	525	5747	477	133	347	314	253	45	3	187	12	4	0
............................................................................................................................................................CTCCCTAACGGAGTCAGATTGA.......................................................	22	1	13456.00	13456	0	0	0	0	18	1	0	0	0	3	0	3	2	0	0	0	0	1	1	0	0	0	0	0	0	1	0	1	6	22	335	451	5	1	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	5	2	4	30	0	0	0	2	0	0	1	2	12	10	53	5	14	105	18	66	4	3	69	99	442	4	0	1	5	0	0	3	2	14	1	4	2	11	3	706	26	4	29	0	6	7	28	1	198	49	206	171	0	0	0	0	0	0	0	0	0	0	3	0	1	0	0	0	1	0	0	0	20	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3112	2454	0	2083	4	1	93	568	25	366	8	101	2	185	3	0	0	0	0	0	313	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	29	5	1	0	0	1	2	0	0	0	2	0	0	0	0	0	0	0	0	224	50	0	0	3	0	1	0	7	35	46	0	12	42	0	2	0	0	26	51	3	1	0	0	1	0	0	2	0	3	0	0	1	2	0	0	0	0	0	0	0	0	0	0	14	0	3	15	24	59	58	0	35	11	3	0	0	0	0	0	0	6	1	3	10	0	0	0	0	0	0	1	0	1	0	1	0	0	0	0	0	0	17	2	2	1	1	0	0	0	0	0	0	0
.......................................................................................................................CAAATTGACTCTAGTAGGGAGT............................................................................................	22	1	12165.00	12165	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	4	0	186	58	586	16	83	14	22	0	1	1	0	0	0	1	0	0	0	1	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	2	0	1	6	0	1	0	0	2	0	23	1	0	0	3	0	0	0	0	0	0	0	0	0	1	3	1	0	7	0	2	4	11	0	0	1	4	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	15	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	82	60	0	91	412	201	1	99	667	17	71	18	74	0	7	0	0	0	0	0	6	1	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	0	0	9	1	2	0	0	1	2	0	0	0	3	0	0	0	0	0	0	0	0	8	1	0	5	25	2	1	0	0	4	102	0	23	58	0	1	1	2	13	21	1	1	2	1	0	0	0	1	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	1	27	4	10	256	219	314	344	0	16	29	16	0	9	0	1	0	0	11	15	45	24	25	1	0	0	0	0	45	1	210	9	86	36	15	117	7	0	340	5638	367	95	186	183	201	29	5	41	5	0	0
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.........................................................................................................................AATTGACTCTAGTAGGGAGTCA..........................................................................................	22	1	119.00	119	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	10	0	3	0	0	7	8	0	16	0	4	0	5	0	0	0	0	0	0	29	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	3	6	0	0	0	0	0	1	0	0	0	0	0	0	2	2	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................CAAATTGACTCTAGTAGG................................................................................................	18	1	96.00	96	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46	0	4	0	0	0	0	0	0	0	2	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	9	7	10	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGGT.............................................................................................	20	1	91.00	91	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	3	6	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	70	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTAA..........................................................................................	23	1	89.00	89	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	4	0	0	0	0	4	11	0	4	0	6	0	21	0	0	0	0	0	0	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	2	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	6	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................AATTGACTCTAGTAGGGAGTCT..........................................................................................	22	1	89.00	89	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	9	0	3	0	0	7	3	0	5	0	5	0	4	0	0	0	0	0	0	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	3	3	0	1	0	1	0	0	0	0	0	0	1	0	1	1	0	1	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	3	0	0	0	2	0	0	0	1	0	0	0

droSim2

TGTGATA-----C---------------------------------------------------------------GTGCCCTGGCATGGC----G--CAACC-AGTCCTGGTGAAGCTCAAATTGACTCTAGTAGGGAGTCCTTT-AATGAGCGACTCCCTAACGGAGTCAGATTGAGCTACAAAGGAGCGA-GACAACAGAGGAGCA-CTTAA--AAA-------GGTGTT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
........................................................................................................................AAATTGACTCTAGTAGGGAGT............................................................................................	21	1	1764.00	1764	699	35	19	51	0	13	1	1	3	2	108	832	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAG.............................................................................................	20	1	791.00	791	651	30	5	6	5	87	1	0	1	0	2	1	0	2	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTC...........................................................................................	22	1	744.00	744	202	5	17	50	0	12	0	1	3	4	69	381	0	0	0	0	0
............................................................................................................................................................CTCCCTAACGGAGTCAGATTG........................................................	21	1	369.00	369	154	0	2	27	4	168	0	0	0	0	0	13	0	0	0	0	1
........................................................................................................................AAATTGACTCTAGTAGGG...............................................................................................	18	1	224.00	224	193	2	6	0	1	20	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGA..............................................................................................	19	1	92.00	92	38	2	0	2	3	39	2	1	1	2	1	1	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTCT..........................................................................................	23	1	73.00	73	5	0	0	6	0	0	0	0	2	3	27	30	0	0	0	0	0
............................................................................................................................................................CTCCCTAACGGAGTCAGATT.........................................................	20	1	62.00	62	37	1	0	1	2	21	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGG............................................................................................	21	1	61.00	61	50	5	2	1	0	0	0	0	0	0	0	3	0	0	0	0	0
.....................................................................................................CC-AGTCCTGGTGAAGCTC.................................................................................................................	18	1	53.00	53	46	2	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGT...............................................................................................	18	1	42.00	42	42	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAT.............................................................................................	20	1	41.00	41	40	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................CTCCCTAACGGAGTCAGAT..........................................................	19	1	38.00	38	27	1	0	0	2	8	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAC.............................................................................................	20	1	34.00	34	34	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGC............................................................................................	21	1	34.00	34	32	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................TCCCTAACGGAGTCAGATTGA.......................................................	21	1	33.00	33	23	0	1	0	0	4	0	1	2	0	0	1	0	1	0	0	0
............................................................................................................................................................CTCCCTAACGGAGTCAGATTGA.......................................................	22	1	30.00	30	9	0	1	2	2	9	0	0	1	2	0	4	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTCA..........................................................................................	23	1	29.00	29	0	0	1	5	0	0	2	0	2	2	10	7	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGT..............................................................................................	19	1	25.00	25	24	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................CTCCCTAACGGAGTCAGA...........................................................	18	1	24.00	24	0	0	0	0	0	24	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................AATTGACTCTAGTAGGGAGT............................................................................................	20	1	23.00	23	15	1	0	3	0	2	0	0	0	0	0	2	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGC..............................................................................................	19	1	19.00	19	18	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................AATTGACTCTAGTAGGGAG.............................................................................................	19	1	17.00	17	13	1	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................AACC-AGTCCTGGTGAAGCTC.................................................................................................................	20	1	16.00	16	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................AATTGACTCTAGTAGGGAGTC...........................................................................................	21	1	11.00	11	3	0	0	2	0	0	0	0	0	0	4	2	0	0	0	0	0
..........................................................................................................................ATTGACTCTAGTAGGGAGTC...........................................................................................	20	1	11.00	11	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................CAAATTGACTCTAGTAGGG...............................................................................................	19	1	10.00	10	8	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................CTAACGGAGTCAGATTGA.......................................................	18	1	10.00	10	9	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGC...............................................................................................	18	1	9.00	9	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................ATTGACTCTAGTAGGGAGT............................................................................................	19	1	9.00	9	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................TCCCTAACGGAGTCAGATTGAG......................................................	22	1	9.00	9	2	2	0	1	0	1	0	0	0	1	0	2	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGA............................................................................................	21	1	9.00	9	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................TCCCTAACGGAGTCAGATTGAGT.....................................................	23	1	7.00	7	3	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTCC..........................................................................................	23	1	7.00	7	0	0	0	1	0	1	0	0	0	0	4	1	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAA.............................................................................................	20	1	6.00	6	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................CAACC-AGTCCTGGTGAAGCTC.................................................................................................................	21	1	6.00	6	5	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................CAAATTGACTCTAGTAGGGAG.............................................................................................	21	1	5.00	5	3	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................CAAATTGACTCTAGTAGGGA..............................................................................................	20	1	5.00	5	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................CAAATTGACTCTAGTAGGGAGT............................................................................................	22	1	4.00	4	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................CAAATTGACTCTAGTAGG................................................................................................	18	1	4.00	4	3	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGTTG............................................................................................	21	1	4.00	4	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGA...............................................................................................	18	1	4.00	4	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................TCCCTAACGGAGTCAGATTG........................................................	20	1	4.00	4	1	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................CTCCCTAACGGAGTCAGATTGAA......................................................	23	1	3.00	3	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTCG..........................................................................................	23	1	3.00	3	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................TCCCTAACGGAGTCAGATTGAA......................................................	22	1	3.00	3	1	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGCT.............................................................................................	20	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................CCTAACGGAGTCAGATTGA.......................................................	19	1	3.00	3	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................TTGACTCTAGTAGGGAGTC...........................................................................................	19	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................ATTGACTCTAGTAGGGAG.............................................................................................	18	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTTT..........................................................................................	23	1	3.00	3	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................TCCCTAACGGAGTCAGATTGAGC.....................................................	23	1	2.00	2	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................TGACTCTAGTAGGGAGTC...........................................................................................	18	1	2.00	2	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................TCCCTAACGGAGTCAGATT.........................................................	19	1	2.00	2	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGG..............................................................................................	19	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGATA............................................................................................	21	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................AATTGACTCTAGTAGGGAGTCT..........................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0
..............................................................................................................................................................CCCTAACGGAGTCAGATTGA.......................................................	20	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................ACC-AGTCCTGGTGAAGCTC.................................................................................................................	19	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGAT..............................................................................................	19	2	2.00	4	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................TCCCTAACGGAGTCAGATTGAAA.....................................................	23	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................AATTGACTCTAGTAGGGA..............................................................................................	18	1	2.00	2	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................CTAACGGAGTCAGATTGAA......................................................	19	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................TCCCTAACGGAGTCAGAT..........................................................	18	1	2.00	2	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................AATTGACTCTAGTAGGGT..............................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................AATTGACTCTAGTAGGGAT.............................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................ATTGACTCTAGTAGGGAGG............................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................CCCTAACGGAGTCAGATTG........................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................TCCCTAACGGAGTCAGATTGAGA.....................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................CCCTAACGGAGTCAGATTGG.......................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................AATTGACTCTAGTAGGGAGG............................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTG...........................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.......................................................................................................................CAAATTGACTCTAGTAGGGAT.............................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................CTCCCTAACGGAGTCAGAC..........................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAAA............................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................ATTGACTCTAGTAGGGAGC............................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................TCAAATTGACTCTAGTAGGGAGT............................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.......................................................................................................................CAAATTGACTCTAGTAGGGAC.............................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTAA..........................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................CTCCCTAACGGAGTCAGATTGAGT.....................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGTC..............................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................GACTCTAGTAGGGAGT............................................................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................AATTGACTCTAGTAGGGAGTCC..........................................................................................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................AATTGACTCTAGTAGGGAGA............................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAAG............................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................G--CAACC-AGTCCTGGTGAAGC...................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................ACTCTAGTAGGGAGT............................................................................................	15	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGATG............................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................CCTAACGGAGTCAGATTG........................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTT...........................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................AATTGACTCTAGTAGGGG..............................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................TCCCTAACGGAGTCAGATTGT.......................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................CTCCCTAACGGAGTCAGATTT........................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................................CCCTAACGGAGTCAGATTGAGC.....................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................CTCCCTAACGGAGTCAGATTGT.......................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................AATTGACTCTAGTAGGGAGC............................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................CTCCCTAACGGAGTCAGATTGAG......................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTCTC.........................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...............................................................................................G--CAACC-AGTCCTGGTGAAGCTC.................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................TTGACTCTAGTAGGGAGG............................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

TGTGATA-----C---------------------------------------------------------------GTGCCCTGACATGGC----G--CAACC-AGTCCTGGTGAAGCTCAAATTGACTCTAGTAGGGAGTCCTTT-AATGAGCGACTCCCTAACGGAGTCAGATTGAGCTACAAAGGAGCGA-GACAACAGAGGAGCA-CTTAA--AAA-------GGTGTT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
........................................................................................................................AAATTGACTCTAGTAGGGAGT............................................................................................	21	1	112939.00	112939	146	12438	3755	96600
........................................................................................................................AAATTGACTCTAGTAGGGAGTC...........................................................................................	22	1	13992.00	13992	112	1190	4242	8448
........................................................................................................................AAATTGACTCTAGTAGGGT..............................................................................................	19	1	7088.00	7088	1	41	7	7039
............................................................................................................................................................CTCCCTAACGGAGTCAGATTG........................................................	21	1	5632.00	5632	145	40	120	5327
.........................................................................................................................AATTGACTCTAGTAGGGAGT............................................................................................	20	1	5145.00	5145	14	469	77	4585
........................................................................................................................AAATTGACTCTAGTAGGGAGTCT..........................................................................................	23	1	1437.00	1437	25	151	447	814
........................................................................................................................AAATTGACTCTAGTAGGGAGTCA..........................................................................................	23	1	1319.00	1319	10	110	143	1056
........................................................................................................................AAATTGACTCTAGTAGGGAG.............................................................................................	20	1	776.00	776	20	98	13	645
........................................................................................................................AAATTGACTCTAGTAGGT...............................................................................................	18	1	478.00	478	0	0	1	477
.........................................................................................................................AATTGACTCTAGTAGGGAGTC...........................................................................................	21	1	442.00	442	21	8	132	281
.......................................................................................................................CAAATTGACTCTAGTAGGGAGT............................................................................................	22	1	314.00	314	4	27	17	266
........................................................................................................................AAATTGACTCTAGTAGGG...............................................................................................	18	1	281.00	281	2	0	6	273
..........................................................................................................................ATTGACTCTAGTAGGGAGT............................................................................................	19	1	274.00	274	2	5	21	246
........................................................................................................................AAATTGACTCTAGTAGGGA..............................................................................................	19	1	210.00	210	8	30	5	167
........................................................................................................................AAATTGACTCTAGTAGGGAGTCC..........................................................................................	23	1	186.00	186	4	21	57	104
........................................................................................................................AAATTGACTCTAGTAGGGAGC............................................................................................	21	1	180.00	180	0	20	6	154
............................................................................................................................................................CTCCCTAACGGAGTCAGATTGA.......................................................	22	1	145.00	145	22	2	63	58
.............................................................................................................................................................TCCCTAACGGAGTCAGATTGA.......................................................	21	1	98.00	98	5	1	4	88
........................................................................................................................AAATTGACTCTAGTAGGGC..............................................................................................	19	1	88.00	88	0	0	0	88
.............................................................................................................................................................TCCCTAACGGAGTCAGATTG........................................................	20	1	87.00	87	6	3	2	76
........................................................................................................................AAATTGACTCTAGTAGGGAGA............................................................................................	21	1	81.00	81	1	6	0	74
........................................................................................................................AAATTGACTCTAGTAGGGAGTCG..........................................................................................	23	1	77.00	77	7	10	9	51
........................................................................................................................AAATTGACTCTAGTAGGGAGTT...........................................................................................	22	1	76.00	76	4	17	2	53
........................................................................................................................AAATTGACTCTAGTAGGGGT.............................................................................................	20	1	60.00	60	0	0	0	60
........................................................................................................................AAATTGACTCTAGTAGGGAGTTT..........................................................................................	23	1	55.00	55	1	10	3	41
......................................................................................................................TCAAATTGACTCTAGTAGGGAGT............................................................................................	23	1	49.00	49	0	4	9	36
.............................................................................................................................................................TCCCTAACGGAGTCAGATTGAG......................................................	22	1	45.00	45	1	2	13	29
........................................................................................................................AAATTGACTCTAGTAGGGAGG............................................................................................	21	1	37.00	37	3	5	1	28
............................................................................................................................................................CTCCCTAACGGAGTCAGATT.........................................................	20	1	25.00	25	6	0	0	19
........................................................................................................................AAATTGACTCTAGTAGGGAGTA...........................................................................................	22	1	21.00	21	1	1	2	17
...........................................................................................................................TTGACTCTAGTAGGGAGT............................................................................................	18	1	19.00	19	0	0	2	17
.........................................................................................................................AATTGACTCTAGTAGGGAG.............................................................................................	19	1	17.00	17	4	1	0	12
........................................................................................................................AAATTGACTCTAGTAGGGTT.............................................................................................	20	1	17.00	17	0	0	0	17
..........................................................................................................................ATTGACTCTAGTAGGGAGTC...........................................................................................	20	1	16.00	16	3	0	10	3
.......................................................................................................................CAAATTGACTCTAGTAGGGAGTC...........................................................................................	23	1	16.00	16	2	0	4	10
.........................................................................................................................AATTGACTCTAGTAGGGT..............................................................................................	18	1	15.00	15	0	0	0	15
........................................................................................................................AAATTGACTCTAGTAGGGG..............................................................................................	19	1	14.00	14	0	0	0	14
........................................................................................................................AAATTGACTCTAGTAGGAGT.............................................................................................	20	10	12.20	122	0	12	3	107
.........................................................................................................................AATTGACTCTAGTAGGGAGTCT..........................................................................................	22	1	12.00	12	0	1	6	5
........................................................................................................................AAATTGACTCTAGTAGGGAGTTA..........................................................................................	23	1	12.00	12	1	2	2	7
.........................................................................................................................AATTGACTCTAGTAGGGAGA............................................................................................	20	1	11.00	11	0	1	0	10
........................................................................................................................AAATTGACTCTAGTAGGGAT.............................................................................................	20	1	11.00	11	0	1	0	10
........................................................................................................................AAATTGACTCTAGTAGGTT..............................................................................................	19	2	9.00	18	0	0	0	18
........................................................................................................................AAATTGACTCTAGTAGGGAA.............................................................................................	20	1	9.00	9	0	1	0	8
............................................................................................................................................................CTCCCTAACGGAGTCAGATTGAA......................................................	23	1	8.00	8	0	0	1	7
............................................................................................................................................................CTCCCTAACGGAGTCAGATTGT.......................................................	22	1	8.00	8	0	1	0	7
........................................................................................................................AAATTGACTCTAGTAGGGAGTCTA.........................................................................................	24	1	8.00	8	0	0	0	8
...............................................................................................................................................................CCTAACGGAGTCAGATTG........................................................	18	1	7.00	7	2	0	0	5
.........................................................................................................................AATTGACTCTAGTAGGGAGC............................................................................................	20	1	7.00	7	0	1	0	6
.........................................................................................................................AATTGACTCTAGTAGGGAGTCC..........................................................................................	22	1	7.00	7	1	2	0	4
........................................................................................................................AAATTGACTCTAGTAGGGTA.............................................................................................	20	1	7.00	7	0	0	0	7
.........................................................................................................................AATTGACTCTAGTAGGGAGTCA..........................................................................................	22	1	7.00	7	0	0	2	5
............................................................................................................................................................CTCCCTAACGGAGTCAGATTA........................................................	21	1	6.00	6	0	0	0	6
.......................................................................................................................CAAATTGACTCTAGTAGGGT..............................................................................................	20	1	6.00	6	0	0	0	6
........................................................................................................................AAATTGACTCTAGTAGGAT..............................................................................................	19	1	5.00	5	0	0	0	5
.......................................................................................................................CAAATTGACTCTAGTAGGGAG.............................................................................................	21	1	5.00	5	0	1	0	4
............................................................................................................................................................CTCCCTAACGGAGTCAGATTGAG......................................................	23	1	5.00	5	0	0	2	3
........................................................................................................................AAATTGACTCTAGTAGGA...............................................................................................	18	1	5.00	5	0	0	0	5
................................................................................................................................................................CTAACGGAGTCAGATTGA.......................................................	18	1	4.00	4	0	0	0	4
............................................................................................................................................................CTCCCTAACGGAGTCAGATTGAT......................................................	23	1	4.00	4	0	0	0	4
...............................................................................................................................................................CCTAACGGAGTCAGATTGA.......................................................	19	1	4.00	4	0	0	1	3
.............................................................................................................................................................TCCCTAACGGAGTCAGATTGAGT.....................................................	23	1	3.00	3	0	0	1	2
.......................................................................................................................CAAATTGACTCTAGTAGGGA..............................................................................................	20	1	3.00	3	1	1	0	1
........................................................................................................................AAATTGACTCTAGTAGGGAGAT...........................................................................................	22	1	3.00	3	1	0	0	2
............................................................................................................................................................CTCCCTAACGGAGTCAGATTT........................................................	21	1	3.00	3	0	0	0	3
............................................................................................................................................................CTCCCTAACGGAGTCAGATTGC.......................................................	22	1	3.00	3	0	0	1	2

droYak3

ACA-GTG-----AAAACGCTA-TAC----------------------------------------ATTA------CGTGCCTTGAAATGGC----A--AAACC-AGTCCTGGTGAAGCTCAAATTGACTCTAGTAGGGAGTCCTTT-AATGAACGACTCCCTAACGGAGTCAGATTGAGCTACAAAGGAGCGA-GACAACACAGGACCA-CTAAA--AAA----------AAA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
........................................................................................................................AAATTGACTCTAGTAGGGAGTC...........................................................................................	22	1	9518.00	9518	27	217	1193	264	1649	5712	456	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGT............................................................................................	21	1	8797.00	8797	103	127	563	529	1325	4267	1883	0	0	0	0
............................................................................................................................................................CTCCCTAACGGAGTCAGATTG........................................................	21	1	4517.00	4517	27	180	3	11	1536	2752	8	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTCA..........................................................................................	23	1	1529.00	1529	2	57	10	9	360	1049	42	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTCT..........................................................................................	23	1	858.00	858	4	26	100	10	140	543	35	0	0	0	0
............................................................................................................................................................CTCCCTAACGGAGTCAGATTGA.......................................................	22	1	639.00	639	1	16	14	6	195	404	2	0	0	1	0
........................................................................................................................AAATTGACTCTAGTAGGG...............................................................................................	18	1	389.00	389	80	4	2	0	90	213	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAG.............................................................................................	20	1	375.00	375	49	11	21	2	70	192	30	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGT..............................................................................................	19	1	183.00	183	9	1	0	0	50	114	9	0	0	0	0
.............................................................................................................................................................TCCCTAACGGAGTCAGATTGA.......................................................	21	1	161.00	161	19	4	4	3	43	82	6	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTCC..........................................................................................	23	1	161.00	161	0	6	53	5	25	69	3	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTCG..........................................................................................	23	1	149.00	149	0	6	1	0	34	99	9	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGC............................................................................................	21	1	125.00	125	7	0	85	0	2	26	5	0	0	0	0
.........................................................................................................................AATTGACTCTAGTAGGGAGTC...........................................................................................	21	1	80.00	80	0	24	6	5	12	33	0	0	0	0	0
.............................................................................................................................................................TCCCTAACGGAGTCAGATTG........................................................	20	1	77.00	77	1	22	0	0	22	32	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGA..............................................................................................	19	1	71.00	71	3	1	0	1	10	24	32	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGT...............................................................................................	18	1	51.00	51	8	0	0	0	10	33	0	0	0	0	0
.........................................................................................................................AATTGACTCTAGTAGGGAGT............................................................................................	20	1	48.00	48	1	13	2	2	7	16	7	0	0	0	0
..........................................................................................................................ATTGACTCTAGTAGGGAGT............................................................................................	19	1	46.00	46	1	1	3	0	14	26	1	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTTT..........................................................................................	23	1	37.00	37	0	3	4	0	6	22	2	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGG............................................................................................	21	1	35.00	35	8	0	4	2	1	17	3	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTT...........................................................................................	22	1	31.00	31	0	0	2	0	7	19	3	0	0	0	0
..........................................................................................................................ATTGACTCTAGTAGGGAGTC...........................................................................................	20	1	28.00	28	1	1	11	0	4	11	0	0	0	0	0
.....................................................................................................CC-AGTCCTGGTGAAGCTC.................................................................................................................	18	1	27.00	27	25	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................CAAATTGACTCTAGTAGGGAGT............................................................................................	22	1	27.00	27	0	2	6	1	1	10	7	0	0	0	0
............................................................................................................................................................CTCCCTAACGGAGTCAGATT.........................................................	20	1	26.00	26	4	6	1	0	6	9	0	0	0	0	0
.......................................................................................................................CAAATTGACTCTAGTAGGGAGTC...........................................................................................	23	1	26.00	26	0	1	19	2	1	3	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTA...........................................................................................	22	1	23.00	23	0	1	5	1	4	12	0	0	0	0	0
............................................................................................................................................................CTCCCTAACGGAGTCAGATTT........................................................	21	1	18.00	18	0	0	0	0	10	8	0	0	0	0	0
.............................................................................................................................................................TCCCTAACGGAGTCAGATTGAG......................................................	22	1	17.00	17	0	0	3	0	4	8	1	0	0	1	0
........................................................................................................................AAATTGACTCTAGTAGGGAGA............................................................................................	21	1	16.00	16	1	0	0	2	6	7	0	0	0	0	0
...................................................................................................AACC-AGTCCTGGTGAAGCTC.................................................................................................................	20	1	15.00	15	6	0	7	0	1	1	0	0	0	0	0
......................................................................................................................TCAAATTGACTCTAGTAGGGAGT............................................................................................	23	1	15.00	15	0	0	2	0	1	7	5	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTG...........................................................................................	22	1	13.00	13	0	0	0	2	8	3	0	0	0	0	0
............................................................................................................................................................CTCCCTAACGGAGTCAGATTGC.......................................................	22	1	12.00	12	0	0	0	0	0	12	0	0	0	0	0
.........................................................................................................................AATTGACTCTAGTAGGGAGTCC..........................................................................................	22	1	11.00	11	0	0	1	0	1	9	0	0	0	0	0
.........................................................................................................................AATTGACTCTAGTAGGGAGTCA..........................................................................................	22	1	11.00	11	0	8	0	0	1	2	0	0	0	0	0
...........................................................................................................................................................ACTCCCTAACGGAGTCAGATTGA.......................................................	23	1	9.00	9	0	0	2	3	1	3	0	0	0	0	0
............................................................................................................................................................CTCCCTAACGGAGTCAGATTGT.......................................................	22	1	9.00	9	0	0	0	0	0	9	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTTA..........................................................................................	23	1	8.00	8	0	0	0	0	3	5	0	0	0	0	0
............................................................................................................................................................CTCCCTAACGGAGTCAGATTGAA......................................................	23	1	6.00	6	0	1	1	1	1	2	0	0	0	0	0
............................................................................................................................................................CTCCCTAACGGAGTCAGAT..........................................................	19	1	6.00	6	5	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................AATTGACTCTAGTAGGGAG.............................................................................................	19	1	5.00	5	1	1	0	0	1	2	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGG................................................................................................	17	1	5.00	5	0	0	0	0	0	5	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTTG..........................................................................................	23	1	5.00	5	1	0	0	0	1	2	1	0	0	0	0
.........................................................................................................................AATTGACTCTAGTAGGGAGTCT..........................................................................................	22	1	5.00	5	0	1	3	0	0	0	1	0	0	0	0
............................................................................................................................................................CTCCCTAACGGAGTCAGATTC........................................................	21	1	5.00	5	0	0	0	0	0	5	0	0	0	0	0
...........................................................................................................................................................ACTCCCTAACGGAGTCAGATTG........................................................	22	1	5.00	5	0	4	0	0	0	1	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGC..............................................................................................	19	1	5.00	5	2	0	0	0	1	2	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTAT..........................................................................................	23	1	4.00	4	0	0	0	0	0	3	1	0	0	0	0
............................................................................................................................................................CTCCCTAACGGAGTCAGATTGAT......................................................	23	1	4.00	4	0	0	0	0	3	1	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGG..............................................................................................	19	1	4.00	4	1	0	0	0	0	3	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGCT...........................................................................................	22	1	4.00	4	0	0	0	0	0	4	0	0	0	0	0
...............................................................................................................................................................CCTAACGGAGTCAGATTG........................................................	18	1	4.00	4	0	0	0	0	1	3	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTGT..........................................................................................	23	1	4.00	4	0	1	0	0	0	3	0	0	0	0	0
................................................................................................................................................................CTAACGGAGTCAGATTGA.......................................................	18	1	4.00	4	2	0	0	0	1	1	0	0	0	0	0
....................................................................................................ACC-AGTCCTGGTGAAGCTC.................................................................................................................	19	1	4.00	4	1	0	3	0	0	0	0	0	0	0	0
.............................................................................................................................................................TCCCTAACGGAGTCAGATTGAGT.....................................................	23	1	3.00	3	1	0	0	0	0	2	0	0	0	0	0
..........................................................................................................................ATTGACTCTAGTAGGGAG.............................................................................................	18	1	3.00	3	1	0	1	0	0	1	0	0	0	0	0
........................................................................................................................AAATTGACTCTAGTAGGTT..............................................................................................	19	1	3.00	3	0	0	0	0	0	3	0	0	0	0	0

droEre2

AAAAAGC-----CATAC------------------------------------------------ATTA------CGCGCCTTGAAGTGGC----G--GAACC-AGTCCTGGTGAAGCTCAAATTGACTCTAGTAGGGAGTCCTTC-CATAAGCGACTCCCTAACGGAGTCAGATTGAGCTACAAAGGAGCGA-GACAACACAGGTGCA------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
........................................................................................................................AAATTGACTCTAGTAGGGAGT............................................................................................	21	1	55442.00	55442	192	84	3135	423	7051	44557	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTC...........................................................................................	22	1	17077.00	17077	248	206	2693	233	1964	11733	0
............................................................................................................................................................CTCCCTAACGGAGTCAGATTG........................................................	21	1	6750.00	6750	184	1	1427	7	143	4988	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTCA..........................................................................................	23	1	2769.00	2769	47	2	485	19	224	1992	0
........................................................................................................................AAATTGACTCTAGTAGGGAG.............................................................................................	20	1	1565.00	1565	31	3	234	1	159	1137	0
............................................................................................................................................................CTCCCTAACGGAGTCAGATTGA.......................................................	22	1	1530.00	1530	19	3	1343	6	1	158	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTCT..........................................................................................	23	1	1528.00	1528	51	16	264	20	217	960	0
........................................................................................................................AAATTGACTCTAGTAGGGT..............................................................................................	19	1	1427.00	1427	0	0	45	0	34	1348	0
........................................................................................................................AAATTGACTCTAGTAGGG...............................................................................................	18	1	814.00	814	4	0	36	0	6	768	0
.........................................................................................................................AATTGACTCTAGTAGGGAGT............................................................................................	20	1	522.00	522	10	1	17	1	80	413	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTCG..........................................................................................	23	1	361.00	361	16	0	64	0	65	216	0
..........................................................................................................................ATTGACTCTAGTAGGGAGT............................................................................................	19	1	233.00	233	2	0	0	0	18	213	0
.........................................................................................................................AATTGACTCTAGTAGGGAGTC...........................................................................................	21	1	231.00	231	23	3	48	0	13	144	0
.............................................................................................................................................................TCCCTAACGGAGTCAGATTGA.......................................................	21	1	135.00	135	4	1	40	3	3	84	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTCC..........................................................................................	23	1	130.00	130	4	3	20	2	12	89	0
........................................................................................................................AAATTGACTCTAGTAGGGAGC............................................................................................	21	1	122.00	122	1	12	9	1	10	89	0
........................................................................................................................AAATTGACTCTAGTAGGGA..............................................................................................	19	1	116.00	116	3	0	13	5	20	75	0
.............................................................................................................................................................TCCCTAACGGAGTCAGATTG........................................................	20	1	90.00	90	21	0	18	1	1	49	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTA...........................................................................................	22	1	82.00	82	0	1	6	0	3	72	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTT...........................................................................................	22	1	70.00	70	0	0	12	2	8	48	0
.......................................................................................................................CAAATTGACTCTAGTAGGGAGT............................................................................................	22	1	65.00	65	2	0	6	0	4	53	0
........................................................................................................................AAATTGACTCTAGTAGGT...............................................................................................	18	2	54.00	108	0	0	1	0	1	106	0
......................................................................................................................TCAAATTGACTCTAGTAGGGAGT............................................................................................	23	1	49.00	49	0	0	2	1	6	40	0
........................................................................................................................AAATTGACTCTAGTAGGGAGG............................................................................................	21	1	36.00	36	4	1	9	2	1	19	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTTT..........................................................................................	23	1	35.00	35	3	0	2	0	12	18	0
........................................................................................................................AAATTGACTCTAGTAGGGAGA............................................................................................	21	1	27.00	27	1	0	2	1	1	22	0
............................................................................................................................................................CTCCCTAACGGAGTCAGATTT........................................................	21	1	25.00	25	1	0	4	0	0	20	0
........................................................................................................................AAATTGACTCTAGTAGGAGT.............................................................................................	20	2	24.00	48	1	0	3	0	5	39	0
............................................................................................................................................................CTCCCTAACGGAGTCAGATT.........................................................	20	1	23.00	23	2	0	0	0	0	21	0
...............................................................................................................................................................CCTAACGGAGTCAGATTGA.......................................................	19	1	21.00	21	0	0	3	0	0	18	0
.........................................................................................................................AATTGACTCTAGTAGGGAG.............................................................................................	19	1	21.00	21	2	0	2	0	4	13	0
.............................................................................................................................................................TCCCTAACGGAGTCAGATTGAG......................................................	22	1	20.00	20	1	0	9	2	0	8	0
................................................................................................................................................................CTAACGGAGTCAGATTGA.......................................................	18	1	20.00	20	0	0	0	0	0	20	0
............................................................................................................................................................CTCCCTAACGGAGTCAGATTGAA......................................................	23	1	18.00	18	2	0	9	0	0	7	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTAT..........................................................................................	23	1	15.00	15	0	0	1	0	4	10	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTTA..........................................................................................	23	1	15.00	15	0	0	4	0	2	9	0
............................................................................................................................................................CTCCCTAACGGAGTCAGATTGC.......................................................	22	1	15.00	15	0	0	15	0	0	0	0
..........................................................................................................................ATTGACTCTAGTAGGGAGTC...........................................................................................	20	1	15.00	15	2	1	1	0	0	11	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTAA..........................................................................................	23	1	14.00	14	0	0	0	0	1	13	0
...........................................................................................................................TTGACTCTAGTAGGGAGT............................................................................................	18	1	13.00	13	0	0	0	0	0	13	0
.......................................................................................................................CAAATTGACTCTAGTAGGGAGTC...........................................................................................	23	1	12.00	12	2	4	0	0	1	5	0
........................................................................................................................AAATTGACTCTAGTAGGGAT.............................................................................................	20	1	12.00	12	1	0	1	0	1	9	0
.........................................................................................................................AATTGACTCTAGTAGGGAGTCA..........................................................................................	22	1	10.00	10	5	0	0	0	0	5	0
............................................................................................................................................................CTCCCTAACGGAGTCAGATTGAT......................................................	23	1	9.00	9	0	0	5	0	0	4	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTCAA.........................................................................................	24	1	8.00	8	5	0	0	0	0	3	0
...............................................................................................................................................................CCTAACGGAGTCAGATTG........................................................	18	1	8.00	8	0	0	1	0	0	7	0
..........................................................................................................................ATTGACTCTAGTAGGGAG.............................................................................................	18	1	8.00	8	1	0	1	0	1	5	0
.........................................................................................................................AATTGACTCTAGTAGGGAGTCT..........................................................................................	22	1	7.00	7	2	0	0	0	2	3	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTG...........................................................................................	22	1	7.00	7	0	0	3	0	0	4	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTCAC.........................................................................................	24	1	6.00	6	0	0	1	0	2	3	0
.........................................................................................................................AATTGACTCTAGTAGGGT..............................................................................................	18	1	6.00	6	1	0	0	0	0	5	0
........................................................................................................................AAATTGACTCTAGTAGGGC..............................................................................................	19	1	6.00	6	0	0	0	0	0	6	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTCTA.........................................................................................	24	1	5.00	5	0	0	0	0	0	5	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTCGA.........................................................................................	24	1	5.00	5	0	0	2	0	0	3	0
..............................................................................................................................................................CCCTAACGGAGTCAGATTGA.......................................................	20	1	5.00	5	0	1	2	0	0	2	0
........................................................................................................................AAATTGACTCTAGTAGGGTT.............................................................................................	20	1	5.00	5	0	0	1	0	0	4	0
........................................................................................................................AAATTGACTCTAGTAGGGTA.............................................................................................	20	1	5.00	5	0	0	0	0	0	5	0
..............................................................................................................................................................CCCTAACGGAGTCAGATTG........................................................	19	1	5.00	5	1	0	0	0	0	4	0
........................................................................................................................AAATTGACTCTAGTAGGGG..............................................................................................	19	1	5.00	5	0	0	0	0	0	5	0
..........................................................................................................................ATTGACTCTAGTAGGGAGTCT..........................................................................................	21	1	4.00	4	0	2	0	0	1	1	0
...........................................................................................................................TTGACTCTAGTAGGGAGTC...........................................................................................	19	1	4.00	4	0	1	1	0	0	2	0
.............................................................................................................................................................TCCCTAACGGAGTCAGATTGAAA.....................................................	23	1	4.00	4	0	0	0	0	0	4	0
........................................................................................................................AAATTGACTCTAGTAGGGAGTTG..........................................................................................	23	1	4.00	4	0	0	0	0	1	3	0
............................................................................................................................................................CTCCCTAACGGAGTCAGATTGAG......................................................	23	1	4.00	4	0	0	3	0	0	1	0

dpe_8

scaffold_6:111466-111523 -

Known Ortholog

Canonical miRNA

intron

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-39.9	-39.4