dpe_780

Name	Class	Family	Strand
Helitron-1N1_DVir	RC	Helitron	+

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AGATGTCCTGCAAGATTACCAGCGTTTAAAAAGTCTCCGCCCGCTGGGAAGTTTGCCGAAAACTTCCGTATGAATTGCTCCCGGACTTGGATCTTTTCCACCCCCGAATACCCAGTCAGGAGGATCTGGTGTGTTTCGCGGACATGGCTCAGTTCACCCAGGCGCAAAATGCGTAAAAGGGTATGGAAAATTATAGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTA ************************************************.((((((......((((((((((((((..((.((...((((.....))))))(((((((((((((((.....)).)))).))).)))).))....))..)))))))(((..(((((...)))))....)))))))))).......))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V057 head	V111 male body	V042 embryo	M042 female body
...............................................................................................................................................................................................................TGTGTGTAACGTCCAGAAGGAA......................	22	0	20	0.35	7	0	7	0	0
.............................................................................................................................................................................TAATAGGGTATGGAAAAGT...........................................................	19	2	3	0.33	1	1	0	0	0
.......................................................................................................................GAGGATATGGTTTGTTTCG.................................................................................................................	19	2	4	0.25	1	0	0	1	0
........................................................................................................................................................................ATGCGTTGAAGGGTATGGA................................................................	19	2	5	0.20	1	1	0	0	0
............................................................................GATCCCAGACTTAGATCTTT...........................................................................................................................................................	20	3	13	0.08	1	1	0	0	0
.GATGTCCTGCAAGATTACCAGCGT..................................................................................................................................................................................................................................	24	0	19	0.05	1	0	0	0	1
..............................................................................................................CCCAGTCAGGAGGATCTG...........................................................................................................................	18	0	20	0.05	1	0	0	0	1

TCTACAGGACGTTCTAATGGTCGCAAATTTTTCAGAGGCGGGCGACCCTTCAAACGGCTTTTGAAGGCATACTTAACGAGGGCCTGAACCTAGAAAAGGTGGGGGCTTATGGGTCAGTCCTCCTAGACCACACAAAGCGCCTGTACCGAGTCAAGTGGGTCCGCGTTTTACGCATTTTCCCATACCTTTTAATATCCATTTTCACCTACACACATTGCAGGTCTTCCTTAGCAAAGGCTGGGGTATTTCAT ************************************************.((((((......((((((((((((((..((.((...((((.....))))))(((((((((((((((.....)).)))).))).)))).))....))..)))))))(((..(((((...)))))....)))))))))).......))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V057 head	M042 female body
....................................................................................................................................................AGTTAAGTGGGTGCGAGTTT...................................................................................	20	3	5	0.20	1	1	0
..............................TTTAGTTGCGGGCGACCCTTC........................................................................................................................................................................................................	21	3	10	0.10	1	1	0
.......................CGAATTTTTCAGAGAAGGGC................................................................................................................................................................................................................	20	3	19	0.05	1	0	1

Species	Coordinate	ID	Alignment
droPer2	scaffold_147:54930-55180 +	dpe_780	AGATGT------CCT-GCAAGATTACCAGCGTTTAAAAAGTCTCCGCCCGCTGGGA----AGTTTGCCGAAAACTTCCGT-ATGAATTGCTCCCGGACTTGGATCTTTTCCACCCCCGAATACCCAGTCAGGAGGA------------------------------------------TCTGGTGTGTT-----TCG---CGGACATGGCTCAGTTCACCCA---GGCGC--AAAAT-----------------------------------------------------------GCGTAAAAGGGTATGGAAAATTATAGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTA----------
dp5	Unknown_group_762:735-935 +		AGATGT------CCT-GCAAGATTACCAGCGTTTAAACAGGCTCCGCCCGCTGGGAGTCCAGTTTGCCGAACACTTCCGTAATGCATCGCTCCCGGACTTGGATCTATTCCACCC-CGAATACCCAGTTAGGAGGA------------------------------------------TCTGTTGTGTT-----TCG---CGGACATGGCGCAGTTCATGTA---GGCGC-------------------------------------------------------------TCACTGC-------TGGAA----------------------------------------------AATTATGGGCCCTTAAGAGT-----------
droWil2	scf2_1100000004968:667557-667697 -		ATTTTT------TCG-C-----------------------------------------------------------------------------------------------TTCCCTCACGCCGGACCAGAAGTG------------------------------------------TTTTTTTTTTG-----T---TTATAATTCCATACACCCA-----------------------------------------------------------------------------TAGCGTAAAATGGTATGTAAAAGTCG-------CCTAAATGTATGTAACAGGCAGAAGGAAGCTTCTCCGACCCCATAAAGTG----------
droVir3	scaffold_13324:954763-954916 -		AATTCT------TAG-TT---------------------------------------------------------------------------------------------------------------GAGAGTGA-TTGACGTGTTTTAC----------------------------TTGTGCACA-----AAGATTTTTATACCCTGAACC------------CATTAAAAAT-----------------------------------------------------------GGGTGTAAGGGTATATTGTATTTATGCGAAATCCAAATGTACGTAACAGGCAGAAGGAAGCATCTCCGACCCCATAAAGTA----------
droMoj3	scaffold_6473:6504106-6504216 +		GGATTT------GCT-ACG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTAATGCCCTGACCC------------CATTAAAAAT-------------------------------------------------------G-CG--AAATCAGGGTATTGTGGGTTTG--------TGAAAGGTTTGTAACAGGCAGAAGGAATCATCGCAGACCCCATAATG------------
droGri2	scaffold_14906:2436302-2436470 +		TGATTTTATTACGAT-GGAGGAATACAAACGAATAATGGAATTCCGCTCGCTTGCTTTTGAGTTCGCCCAGCATTACGAAAATATTACACAAACAGACTTGGATATACCCAGCACACGAATTCCCAACCAACAGGA------------------------------------------TCTACAGTGCC-----TAG---CCGATATGACTCAGTTGACC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3	scaffold_13417:5054387-5054533 -		TTTTCA------CCC-TT----------------------------------------------------------------------------------------------------AATACTCAATAATCAATAATCTAGCCTGTTTCTG----------------------------TTTTGCGAATTTGGTACATTTTTATACC---------------------------------------------------------------------------------CTTG-C------AGAGGGTATTATAATTTTG-------GTCAAAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTA----------
droBip1	scf7180000394160:32765-32961 +		AAATGA------TCCTACTTTCATGTT----------------------TTTGACGATAAAAAGTTGAAACTTCGTACAGATTCTA-TTTTTGGTCAGTTGAT------------------------------------------------------------------------------------------------------CCCACCTACCCA----------------------------------ATTTCTGGGACTTGGGATGTTTGGGACTTGTT-ATACCCTTG-C------AGAGGGTATTATAATTTTG-------TCCAAAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTA----------
droKik1	scf7180000302660:195906-196133 +		GTCTCA------GCT---------------------------------CGCCACCTGGCAGATTCACCGACAACCGCAGGAGCATGGAATCAAGCCGGGAA----TTTGT---G------TCCACGCGCCAACGCT------------------------------------------TCTGTTGGACT-----TCG---ATGACGTCGGTCACTGGCAGCAGCGTGAGC--AGGGTGAGTAAAAAAATATAA----------------------------TT-AAACCCTTG-C--------AGGGTATTATGATTTCA-------GTCAGAAGTTTGCAAAGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTA----------
droFic1	scf7180000454113:822649-822820 +		AAAATT------CCG-TCA--------------------------------------------------------------TCGAACTACTTCTAGACTCGTCTTGATTCG--------ATTCC-ATTCGATTCGC------------------TGCGA---------------TGCGATTCGTGGTCG-----TACATTTTTATACC---------------------------------------------------------------------------------CTTG-CAGAGCAAAAGGGTATTATAATTTCA-------GTCAGAAGTTTGCAACGCAATGAAGGAGACACCTTAGACCCCATAAAGTA----------
droEle1	scf7180000491043:3819-3981 -		CCCCCG------ATC-TC----------------------------------------------------------------------------------CGATCTCT--G--------ATCTCCGATCTACATTC----------------CCTCGAGAGAACCCTAAAGACG----GGTTCTGCGAG---------------CATG------------------------------------TAAATGCAG----------------------------TTCT---------GGCCATCAGAGGGTATTATAATTTCA-------GTCAGAAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTA----------
droRho1	scf7180000777740:9818-9991 -		CAAAAT------TTT-CTTC-------------------------------------------------------------TTAAATTACCCACGAATTTTTATTTCTTCA--------ACACCTAAAAATAATTA--------------------------------------TATTTATTATAAACT-----TAGCTAATTATACCCGTTACTCG-----------------------------------------------------------------------------TAGAGTAAAAGGGTATATTGTATTCG-------TGCAAAAGTATGTAACAGCTAGAAGGAAGCGTTTCCGACCCTATAAAGTA----------
droBia1	scf7180000302075:4951818-4951978 -		AAATGT------CCT-GCAGAAATTTCAGCATTTTAAGCAACTCAAACCCCTGGGCATTGAGTTTGCCGACTACTTTCAAAATGTAACGCTAAACGAATTAAGTGTTTTCGACGCCCGATTGCCAACTCAGCAGGA------------------------------------------TCTTTTGTGCC-----TCA---ATGATATGTCCAAGTTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1	scf7180000415376:273756-273922 -		AGATGT------CCT-GCCGGGACTCCAAAGTCTCAGAAGTCTCAAGCCTTTGGGAACTGAATTTGCAGAATACTTTCAAAATGTAACGCTGAATGACTTGGGCCTTCTGGACCCCAGATTGCCAACTCAGCAGGA------------------------------------------TCTCTTGTGTC-----TCA---AGCATTTGACTGAGCTTACTTT---GG----------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1	scf7180000408967:17897-18065 -		TTGTTC------CCT-TTGG----------------------------------------------------------------------------------ATATCTTCC--------ATACCTCATTAAAATAT----------------TCTGGGGCGTTCTTTAGGGACA------ATCTCAAAT-----CTTCTAATTATACCAGTTACTCG-----------------------------------------------------------------------------TAGAGTAAAAGGGTATACTAGATTCG-------TTGAAAAGTATGTAACAGATAGAAGGAAGCTTTTGCGACCGTATAAAGTA----------
dm3	chr3R:19418208-19418420 -		AAGTGT------CCT-GGAAGAATACCAGCGCCTGAGGAAGCTCAAACCGTTGGGTATTGAGTTTGCCGATTACTTTCAAAATGTAACGCTAAATGATTTGAGCCTGTTTGACTCGCGATTGCCCACACAGGCGGA------------------------------------------TCTTCTGTGCT-----TAA---ATGACTTAACTAAGCTTGTCTC---GGCTC-------------------------------------------------------------TTCAAGG-------TGGAC----------------------------------------------AATATTGGGCATTCAAAAGTAAGTTAACAGT
droSim2	2r:20796614-20796775 -		AGATGT------CCT-GCCGGGATATCACAATCTCAAGAAGCTCAGGCCGCTGGGAACTGAATTTGCCGAGTACTTCCATAATGTTACCCTGAGTGACCTGGAAGTCCGGGACCCAAGGCTGCCAAGTCAGCAGGA------------------------------------------TCTACTGTGCC-----TCA---GGCACATGACTCAGCTCAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2	scaffold_23:190893-191054 -		AGATGT------CCT-GCCGGGATATCACAATCTTAAGAAGCTCAGGCCGCTGGGAACTGAATTTGCCGAGTACTTCCATAATGTTAGCCTGAGTGACCTGGAAGTCCGGGACCCAAGGCTGCCAAGTCAGCAGGA------------------------------------------TCTACTGTGCC-----TCA---GGCACATGACTCAGCTCAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3	3R:20305874-20306076 -		AAGTGT------CCT-GGAAGAATTCCAGCGTCTGAGGAAGCTCAAGCCCTTGGGTATTGAGTTCGCAGACTACTTTCAAAATGTAACGCTTGGTGATTTGAGCCTCTTCGACTCCCAGTTGCCCACACAGGATGA------------------------------------------TCTTCAGTGCC-----TCA---ATGACATATCCATGCTCGTCTT---GGCTC-------------------------------------------------------------TCCAAGG-------TGGAC----------------------------------------------AATATTGGGCATTGAAAAGTA----------
droEre2	scaffold_4929:6323717-6323809 -		TTAGTT------TT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATAGC-------------------CGT----------------------------------------------------------------TAAAGTAAAAGGGTATTCTAGATTGG-------TTGAAAAGTATGTAACAGGCAGAAGGAAGCCTTCCCGACCATATAAAGTA----------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droPer2

AGATGT------CCT-GCAAGATTACCAGCGTTTAAAAAGTCTCCGCCCGCTGGGA----AGTTTGCCGAAAACTTCCGT-ATGAATTGCTCCCGGACTTGGATCTTTTCCACCCCCGAATACCCAGTCAGGAGGA------------------------------------------TCTGGTGTGTT-----TCG---CGGACATGGCTCAGTTCACCCA---GGCGC--AAAAT-----------------------------------------------------------GCGTAAAAGGGTATGGAAAATTATAGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTA----------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.............................................................................................................................................................................................................................................................................................................................................TGTGTGTAACGTCCAGAAGGAA................................	22	20	0.35	7	0	0	0	0	0	7
.GATGT------CCT-GCAAGATTACCAGCGT...................................................................................................................................................................................................................................................................................................................................................................	24	19	0.05	1	0	1	0	0	0	0
..........................................................................................................................CCCAGTCAGGAGGA------------------------------------------TCTG.............................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0

dp5

AGATGT------CCT-GCAAGATTACCAGCGTTTAAACAGGCTCCGCCCGCTGGGAGTCCAGTTTGCCGAACACTTCCGTAATGCATCGCTCCCGGACTTGGATCTATTCCACCC-CGAATACCCAGTTAGGAGGA------------------------------------------TCTGTTGTGTT-----TCG---CGGACATGGCGCAGTTCATGTA---GGCGC-------------------------------------------------------------TCACTGC-------TGGAA----------------------------------------------AATTATGGGCCCTTAAGAGT-----------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
................................................................................................................................TAGGAGGA------------------------------------------TCTGTTGTGTT-----TCG---CGGA.......................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.GATGT------CCT-GCAAGATTACCAGC.....................................................................................................................................................................................................................................................................................................................................................................	22	4	0.50	2	0	2	0	0	0	0	0	0	0	0
.GATGT------CCT-GCAAGATTACC........................................................................................................................................................................................................................................................................................................................................................................	19	4	0.25	1	0	1	0	0	0	0	0	0	0	0
AGATGT------CCT-GCAAGATTACCAGC.....................................................................................................................................................................................................................................................................................................................................................................	23	4	0.25	1	0	0	1	0	0	0	0	0	0	0
.GATGT------CCT-GCAAGATTACCA.......................................................................................................................................................................................................................................................................................................................................................................	20	4	0.25	1	0	1	0	0	0	0	0	0	0	0
....GT------CCT-GCAAGATTACCAG......................................................................................................................................................................................................................................................................................................................................................................	18	4	0.25	1	0	1	0	0	0	0	0	0	0	0

droWil2

ATTTTT------TCG-C-----------------------------------------------------------------------------------------------TTCCCTCACGCCGGACCAGAAGTG------------------------------------------TTTTTTTTTTG-----T---TTATAATTCCATACACCCA-----------------------------------------------------------------------------TAGCGTAAAATGGTATGTAAAAGTCG-------CCTAAATGTATGTAACAGGCAGAAGGAAGCTTCTCCGACCCCATAAAGTG----------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.............................................................................................................................................................................................................................................................................................................................................TGTATGTAACAGGCAGAAGGAAGC..............................	24	20	0.45	9	0	0	0	9	0
..........................................................................................................................................................................................................................................................................................................................................AAATGTATGTAACAGGCAGAAGGAA................................	25	20	0.20	4	0	0	0	4	0
.........................................................................................................................................................................................................................................................................................................................................TAAATGTATGTAACAGGCAGAAGG..................................	24	8	0.13	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................TATGTAACAGGCAGAAGGAAGCTTC...........................	25	20	0.10	2	0	2	0	0	0
...................................................................................................................................AAGTG------------------------------------------TTTTTTTTTTG-----T---TT...........................................................................................................................................................................................	19	14	0.07	1	0	0	0	1	0

droVir3

AATTCT------TAG-TT---------------------------------------------------------------------------------------------------------------GAGAGTGA-TTGACGTGTTTTAC----------------------------TTGTGCACA-----AAGATTTTTATACCCTGAACC------------CATTAAAAAT-----------------------------------------------------------GGGTGTAAGGGTATATTGTATTTATGCGAAATCCAAATGTACGTAACAGGCAGAAGGAAGCATCTCCGACCCCATAAAGTA----------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
....................................................................................................................................................TTAC----------------------------TTGTGCACA-----AAGATTTTTATACCC..................................................................................................................................................................................	28	2	80.00	160	0	0	4	3	3	1	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	3	8	15	11	29	1	0	0	0	20	0	19	17	10	10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TTAC----------------------------TTGTGCACA-----AAGATTTTTATAC....................................................................................................................................................................................	26	2	22.50	45	0	0	0	0	3	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	3	2	6	0	1	0	0	4	1	2	7	3	5	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................TAC----------------------------TTGTGCACA-----AAGATTTTTATACCC..................................................................................................................................................................................	27	2	14.50	29	0	0	3	0	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	2	1	0	0	0	0	4	0	4	1	1	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TTAC----------------------------TTGTGCACA-----AAGATTTTTAT......................................................................................................................................................................................	24	2	12.50	25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	8	3	3	3	0	0	0	0	1	0	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TTAC----------------------------TTGTGCACA-----AAGATTTTTATACCCT.................................................................................................................................................................................	29	2	11.50	23	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	3	1	2	5	0	0	0	0	1	0	2	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................TCCAAATGTACGTAACAGGCAGAAGG..................................	26	6	9.17	55	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	2	0	0	1	4	6	0	2	3	2	0	1	2	0	15	6	6	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TTAC----------------------------TTGTGCACA-----AAGATTTTTATACC...................................................................................................................................................................................	27	2	8.50	17	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	4	0	0	0	0	1	0	3	3	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................TAC----------------------------TTGTGCACA-----AAGATTTTTATACCCT.................................................................................................................................................................................	28	2	5.50	11	0	0	0	0	1	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TTAC----------------------------TTGTGCACA-----AAGATTTTTATA.....................................................................................................................................................................................	25	2	3.50	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	2	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................TTAAAAAT-----------------------------------------------------------GGGTGTAAGGGTATAT...........................................................................	24	20	2.80	56	0	0	1	0	0	0	0	0	22	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	12	0	0	0	3	0	0	0	0	13	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................TCCAAATGTACGTAACAGGCAGAAGGA.................................	27	6	2.17	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	2	0	0	0	0	0	0	1	0	4	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TTAC----------------------------TTGTGCACA-----AAGATTTTTATACA...................................................................................................................................................................................	27	2	2.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................TTAAAAAT-----------------------------------------------------------GGGTGTAAGGGTATATTG.........................................................................	26	20	1.50	30	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	5	0	0	0	4	0	0	0	0	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TTAC----------------------------TTGTGCACA-----AAGATTTTTA.......................................................................................................................................................................................	23	2	1.50	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................TCCAAATGTACGTAACAGGCAGAAG...................................	25	7	1.43	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	3	0	0	0	1	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................TTTTAC----------------------------TTGTGCACA-----AAGATTTTTAT......................................................................................................................................................................................	26	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................TAC----------------------------TTGTGCACA-----AAGATTTTTATAC....................................................................................................................................................................................	25	2	1.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TTAC----------------------------TTGTGCACA-----AAGATTTTTATACCT..................................................................................................................................................................................	28	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................TTTAC----------------------------TTGTGCACA-----AAGATTTTTATAC....................................................................................................................................................................................	27	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................TAC----------------------------TTGTGCACA-----AAGATTTTTATACC...................................................................................................................................................................................	26	2	1.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...TCT------TAG-TT---------------------------------------------------------------------------------------------------------------GAGAGTGA-TTGACGTG.................................................................................................................................................................................................................................................	24	7	1.00	7	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................TTAAAAAT-----------------------------------------------------------GGGTGTAAGGGTATATT..........................................................................	25	20	0.90	18	0	0	0	0	0	0	0	1	7	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	1	0	0	0	0	4	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................TCCAAATGTACGTAACAGGCA.......................................	21	8	0.75	6	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TTAC----------------------------TTGTGCACA-----AAGATTTTTATAAA...................................................................................................................................................................................	27	4	0.75	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................TTAAAAAT-----------------------------------------------------------GGGTGTAAGGGTATATTGT........................................................................	27	20	0.60	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................TTAAAAAT-----------------------------------------------------------GGGTGTAAGGGTATA............................................................................	23	20	0.60	12	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TTAC----------------------------TTGTGCACA-----AAGATTTTTATACAAA.................................................................................................................................................................................	29	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................TAC----------------------------TTGTGCACA-----AAGATTTTTATACCT..................................................................................................................................................................................	27	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TTAC----------------------------TTGTGCACA-----AAGAT............................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................TAC----------------------------TTGTGCACA-----AAGATTTTTATACA...................................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TTAC----------------------------TTGTGCACA-----AAGATTTTTATACCA..................................................................................................................................................................................	28	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TTAC----------------------------TTGTGCACA-----AAGATTTTTATAG....................................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TTAC----------------------------TTGTGCACA-----AAGATTTTTATC.....................................................................................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....T------TAG-TT---------------------------------------------------------------------------------------------------------------GAGAGTGA-TTGACGTG.................................................................................................................................................................................................................................................	22	8	0.50	4	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TTAC----------------------------TTGTGCACA-----AAGATT...........................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TTAC----------------------------TTGTGCACA-----AAGATTTTTATAAAA..................................................................................................................................................................................	28	4	0.50	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TTAC----------------------------TTGTGCACA-----AAGATTTTT........................................................................................................................................................................................	22	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................AC----------------------------TTGTGCACA-----AAGATTTTTATACCC..................................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TTAC----------------------------TTGTGCACA-----AAGATTTTTATACCG..................................................................................................................................................................................	28	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...TCT------TAG-TT---------------------------------------------------------------------------------------------------------------GAGAGTGA-TTGACGTGT................................................................................................................................................................................................................................................	25	7	0.43	3	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...TCT------TAG-TT---------------------------------------------------------------------------------------------------------------GAGAGTGA-TTGACGTGTT...............................................................................................................................................................................................................................................	26	7	0.43	3	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................TCCAAATGTACGTAACAGGCAGA.....................................	23	7	0.43	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................TCCAAATGTACGTAACAGGCAGAA....................................	24	7	0.43	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................GAGTGA-TTGACGTGTTTTAC----------------------------TTGTGC.........................................................................................................................................................................................................	26	20	0.35	7	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..TTCT------TAG-TT---------------------------------------------------------------------------------------------------------------GAGAGTGA-TTGACGTG.................................................................................................................................................................................................................................................	25	7	0.29	2	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............TAG-TT---------------------------------------------------------------------------------------------------------------GAGAGTGA-TTGACGTG.................................................................................................................................................................................................................................................	21	8	0.25	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....T------TAG-TT---------------------------------------------------------------------------------------------------------------GAGAGTGA-TTGACGTGTT...............................................................................................................................................................................................................................................	24	8	0.25	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TTAC----------------------------TTGTGCACA-----AAGATTTTTATAT....................................................................................................................................................................................	26	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................TCCAAATGTACGTAACAGG.........................................	19	9	0.22	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................TCCAAATGTACGTAACAGGCAGAAGGAA................................	28	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................GGCAGAAGGAAGCATCTC.........................	18	20	0.15	3	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................TTAAAAAT-----------------------------------------------------------GGGTGTAAGGGTAT.............................................................................	22	20	0.15	3	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................TTAAAAAT-----------------------------------------------------------GGGTGTAAGGGTATATTGTA.......................................................................	28	20	0.15	3	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................T---------------------------------------------------------------------------------------------------------------GAGAGTGA-TTGACGTGTTT..............................................................................................................................................................................................................................................	20	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...TCT------TAG-TT---------------------------------------------------------------------------------------------------------------GAGAGTGA-TTGACGTGTTC..............................................................................................................................................................................................................................................	27	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....CT------TAG-TT---------------------------------------------------------------------------------------------------------------GAGAGTGA-TTGACGTG.................................................................................................................................................................................................................................................	23	7	0.14	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................TCCAAATGTACGTAACAGGCAG......................................	22	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...TCT------TAG-TT---------------------------------------------------------------------------------------------------------------GAGAGTGA-TTGA.....................................................................................................................................................................................................................................................	20	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....CT------TAG-TT---------------------------------------------------------------------------------------------------------------GAGAGTGA-TTGA.....................................................................................................................................................................................................................................................	19	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....T------TAG-TT---------------------------------------------------------------------------------------------------------------GAGAGTGA-TTGACGTGTTTTA............................................................................................................................................................................................................................................	27	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............TAG-TT---------------------------------------------------------------------------------------------------------------GAGAGTGA-TTGACGTGT................................................................................................................................................................................................................................................	22	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....T------TAG-TT---------------------------------------------------------------------------------------------------------------GAGAGTGA-TTGACGTGT................................................................................................................................................................................................................................................	23	8	0.13	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....T------TAG-TT---------------------------------------------------------------------------------------------------------------GAGAGTGA-TTGACGTGTTC..............................................................................................................................................................................................................................................	25	8	0.13	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................AATCCAAATGTACGTAACAGG.........................................	21	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................GTACGTAACAGGCAGAAGGAAGCATC...........................	26	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................ATCCAAATGTACGTAACAGG.........................................	20	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................CC------------CATTAAAAAT-----------------------------------------------------------GGGTGTAAGGG................................................................................	23	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................TT---------------------------------------------------------------------------------------------------------------GAGAGTGA-TTGACGTGT................................................................................................................................................................................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................AAAAAT-----------------------------------------------------------GGGTGTAAGGGTATATTGT........................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................CGTAACAGGCAGAAGGAAGCA.............................	21	14	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................TAAAAAT-----------------------------------------------------------GGGTGTAAGGGTATATTG.........................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................TTAAAAAT-----------------------------------------------------------GGGTGTAAGGGTA..............................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................AT-----------------------------------------------------------GGGTGTAAGGGTATAT...........................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................T-----------------------------------------------------------GGGTGTAAGGGTATATTGTA.......................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................TTAAAAAT-----------------------------------------------------------GGGTGTAAGGGTATT............................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................TT---------------------------------------------------------------------------------------------------------------GAGAGTGA-TTGACGTGTT...............................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................TTAAAAAT-----------------------------------------------------------GGGTGTAAGGG................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................GTACGTAACAGGCAGAAGG..................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................AGAGTGA-TTGACGTGTTTTAC----------------------------TTGTGC.........................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................AGAGTGA-TTGACGTGTTTTAC----------------------------TTGT...........................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................AGGCAGAAGGAAGCATCTC.........................	19	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................T---------------------------------------------------------------------------------------------------------------GAGAGTGA-TTGACGTGTC...............................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................AGGCAGAAGGAAGCATCTCCGA......................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................T---------------------------------------------------------------------------------------------------------------GAGAGTGA-TTGACGTGTTTTAC----------------------------T..............................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............AG-TT---------------------------------------------------------------------------------------------------------------GAGAGTGA-TTGACGTGTTC..............................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................T---------------------------------------------------------------------------------------------------------------GAGAGTGA-TTGACGTGT................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................TGAACC------------CATTAAAAAT-----------------------------------------------------------GGGTGTAAGG.................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................TAAAAAT-----------------------------------------------------------GGGTGTAAGGGTATATTGTA.......................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GGATTT------GCT-ACG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTAATGCCCTGACCC------------CATTAAAAAT-------------------------------------------------------G-CG--AAATCAGGGTATTGTGGGTTTG--------TGAAAGGTTTGTAACAGGCAGAAGGAATCATCGCAGACCCCATAATG------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
............................................................................................................................................................................................................................................................................................................................................................GAAGGAATCATCGCAGACCCC..................	21	20	0.15	3	3	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................GGCAGAAGGAATCATCGCAGA......................	21	20	0.05	1	0	0	0	0	0	1
............................................................................................................................................................................................................................................................................................................................................................GAAGGAATCATCGCAGACCCCA.................	22	20	0.05	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................AGGCAGAAGGAATCATCGCAGA......................	22	20	0.05	1	0	0	0	0	0	1

droGri2

TGATTTTATTACGAT-GGAGGAATACAAACGAATAATGGAATTCCGCTCGCTTGCTTTTGAGTTCGCCCAGCATTACGAAAATATTACACAAACAGACTTGGATATACCCAGCACACGAATTCCCAACCAACAGGA------------------------------------------TCTACAGTGCC-----TAG---CCGATATGACTCAGTTGACC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
...................................ATGGAATTCCGCTCGCTTGC............................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0
................................................CGCTTGCTTTTGAGTTCGCCC..............................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0

droAna3

TTTTCA------CCC-TT----------------------------------------------------------------------------------------------------AATACTCAATAATCAATAATCTAGCCTGTTTCTG----------------------------TTTTGCGAATTTGGTACATTTTTATACC---------------------------------------------------------------------------------CTTG-C------AGAGGGTATTATAATTTTG-------GTCAAAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTA----------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.....................................................................................................................................................................................................................................................................................................................TTATAATTTTG-------GTCAAAAGTGT.................................................	22	20	0.05	1	0	1	0	0	0	0

droBip1

AAATGA------TCCTACTTTCATGTT----------------------TTTGACGATAAAAAGTTGAAACTTCGTACAGATTCTA-TTTTTGGTCAGTTGAT------------------------------------------------------------------------------------------------------CCCACCTACCCA----------------------------------ATTTCTGGGACTTGGGATGTTTGGGACTTGTT-ATACCCTTG-C------AGAGGGTATTATAATTTTG-------TCCAAAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTA----------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GTCTCA------GCT---------------------------------CGCCACCTGGCAGATTCACCGACAACCGCAGGAGCATGGAATCAAGCCGGGAA----TTTGT---G------TCCACGCGCCAACGCT------------------------------------------TCTGTTGGACT-----TCG---ATGACGTCGGTCACTGGCAGCAGCGTGAGC--AGGGTGAGTAAAAAAATATAA----------------------------TT-AAACCCTTG-C--------AGGGTATTATGATTTCA-------GTCAGAAGTTTGCAAAGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTA----------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AAAATT------CCG-TCA--------------------------------------------------------------TCGAACTACTTCTAGACTCGTCTTGATTCG--------ATTCC-ATTCGATTCGC------------------TGCGA---------------TGCGATTCGTGGTCG-----TACATTTTTATACC---------------------------------------------------------------------------------CTTG-CAGAGCAAAAGGGTATTATAATTTCA-------GTCAGAAGTTTGCAACGCAATGAAGGAGACACCTTAGACCCCATAAAGTA----------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CCCCCG------ATC-TC----------------------------------------------------------------------------------CGATCTCT--G--------ATCTCCGATCTACATTC----------------CCTCGAGAGAACCCTAAAGACG----GGTTCTGCGAG---------------CATG------------------------------------TAAATGCAG----------------------------TTCT---------GGCCATCAGAGGGTATTATAATTTCA-------GTCAGAAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTA----------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CAAAAT------TTT-CTTC-------------------------------------------------------------TTAAATTACCCACGAATTTTTATTTCTTCA--------ACACCTAAAAATAATTA--------------------------------------TATTTATTATAAACT-----TAGCTAATTATACCCGTTACTCG-----------------------------------------------------------------------------TAGAGTAAAAGGGTATATTGTATTCG-------TGCAAAAGTATGTAACAGCTAGAAGGAAGCGTTTCCGACCCTATAAAGTA----------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AAATGT------CCT-GCAGAAATTTCAGCATTTTAAGCAACTCAAACCCCTGGGCATTGAGTTTGCCGACTACTTTCAAAATGTAACGCTAAACGAATTAAGTGTTTTCGACGCCCGATTGCCAACTCAGCAGGA------------------------------------------TCTTTTGTGCC-----TCA---ATGATATGTCCAAGTTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AGATGT------CCT-GCCGGGACTCCAAAGTCTCAGAAGTCTCAAGCCTTTGGGAACTGAATTTGCAGAATACTTTCAAAATGTAACGCTGAATGACTTGGGCCTTCTGGACCCCAGATTGCCAACTCAGCAGGA------------------------------------------TCTCTTGTGTC-----TCA---AGCATTTGACTGAGCTTACTTT---GG----------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TTGTTC------CCT-TTGG----------------------------------------------------------------------------------ATATCTTCC--------ATACCTCATTAAAATAT----------------TCTGGGGCGTTCTTTAGGGACA------ATCTCAAAT-----CTTCTAATTATACCAGTTACTCG-----------------------------------------------------------------------------TAGAGTAAAAGGGTATACTAGATTCG-------TTGAAAAGTATGTAACAGATAGAAGGAAGCTTTTGCGACCGTATAAAGTA----------	Size	Hit Count	Total Norm	Total
No Reads

dm3

AAGTGT------CCT-GGAAGAATACCAGCGCCTGAGGAAGCTCAAACCGTTGGGTATTGAGTTTGCCGATTACTTTCAAAATGTAACGCTAAATGATTTGAGCCTGTTTGACTCGCGATTGCCCACACAGGCGGA------------------------------------------TCTTCTGTGCT-----TAA---ATGACTTAACTAAGCTTGTCTC---GGCTC-------------------------------------------------------------TTCAAGG-------TGGAC----------------------------------------------AATATTGGGCATTCAAAAGTAAGTTAACAGT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.................................................................................................................................................................................................................................GGCTC-------------------------------------------------------------TTCAAGG-------TGGAC----------------------------------------------A..............................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................TACCAGCGCCTGAGGAAGCTCAAAC...................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
.................................................................................................................................AGGCGGA------------------------------------------TCTTCTGTGCT-----C................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................AAGAATACCAGCGCCTGAGG.............................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.....................................................................................AACGCTAAATGATTTGAG............................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................ATTGCCCACACAGGCGGA------------------------------------------T................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................TAA---ATGACTTAACTAAGCTTGTCTC---GGC...............................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................AGCGCCTGAGGAAGCTCAAACCGTTGGG............................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..GTGT------CCT-GGAAGAATACCAGCGCC..................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................TCTGTGCT-----TAA---ATGACTTA...................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................GAGGAAGCTCAAACCGGG...............................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

AGATGT------CCT-GCCGGGATATCACAATCTCAAGAAGCTCAGGCCGCTGGGAACTGAATTTGCCGAGTACTTCCATAATGTTACCCTGAGTGACCTGGAAGTCCGGGACCCAAGGCTGCCAAGTCAGCAGGA------------------------------------------TCTACTGTGCC-----TCA---GGCACATGACTCAGCTCAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
........................................................................................................GTCCGGGACCCAAGG............................................................................................................................................................................................................................................................................	15	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
........................................................................................................GTCCGGGACCCAAGGCTG.........................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................TATCACAATCTCAAGAAGCTC.......................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

AGATGT------CCT-GCCGGGATATCACAATCTTAAGAAGCTCAGGCCGCTGGGAACTGAATTTGCCGAGTACTTCCATAATGTTAGCCTGAGTGACCTGGAAGTCCGGGACCCAAGGCTGCCAAGTCAGCAGGA------------------------------------------TCTACTGTGCC-----TCA---GGCACATGACTCAGCTCAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

AAGTGT------CCT-GGAAGAATTCCAGCGTCTGAGGAAGCTCAAGCCCTTGGGTATTGAGTTCGCAGACTACTTTCAAAATGTAACGCTTGGTGATTTGAGCCTCTTCGACTCCCAGTTGCCCACACAGGATGA------------------------------------------TCTTCAGTGCC-----TCA---ATGACATATCCATGCTCGTCTT---GGCTC-------------------------------------------------------------TCCAAGG-------TGGAC----------------------------------------------AATATTGGGCATTGAAAAGTA----------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.............................................AGCCCTTGGGTATTGAGTTCGC................................................................................................................................................................................................................................................................................................................................	22	2	1.50	3	0	0	0	0	0	0	3	0	0	0	0
.............................................AGCCCTTGGGTATTGAGTTCGCA...............................................................................................................................................................................................................................................................................................................................	23	2	1.50	3	0	3	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................C-------------------------------------------------------------TCCAAGG-------TGGAC----------------------------------------------AATATTGGGC.....................	23	2	1.50	3	0	3	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................GACATATCCATGCTCGTCTT---..................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................GATTTGAGCCTCTTCGACT.................................................................................................................................................................................................................................................................................	19	2	1.00	2	0	2	0	0	0	0	0	0	0	0	0
..............................................................................................................GACTCCCAGTTGCCCACACAGG...............................................................................................................................................................................................................................................................	22	2	1.00	2	0	2	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................GACATATCCATGCTCGTCT......................................................................................................................................................................	19	2	1.00	2	0	2	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................TGACATATCCATGCTCGTCTT---..................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................CCAGCGTCTGAGGAAGCTCA......................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................AATTCCAGCGTCTGAGGAAGCTCAAGC...................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................AGAATTCCAGCGTCTGAGGAAGCT........................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................GTCTT---GGCTC-------------------------------------------------------------TCCAAGG-------TGGAC----------------------------------------------...............................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................GACTCCCAGTTGCCCACACAGGATG............................................................................................................................................................................................................................................................	25	2	1.00	2	0	2	0	0	0	0	0	0	0	0	0
AAGTGT------CCT-GGAAGAATTCCAGCGTCT.................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................TCAAAATGTAACGCTTGGT....................................................................................................................................................................................................................................................................................................	19	2	1.00	2	0	2	0	0	0	0	0	0	0	0	0
.............................................................................................................CGACTCCCAGTTGCCCACACAGGATG............................................................................................................................................................................................................................................................	26	2	1.00	2	0	2	0	0	0	0	0	0	0	0	0
......................ATTCCAGCGTCTGAGGAAGCTCA......................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
......................ATTCCAGCGTCTGAGGAAGCTCAA.....................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................GATTTGAGCCTCTTCGACTCCCAGT...........................................................................................................................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................GATGA------------------------------------------TCTTCAGTGCC-----TCA---A..........................................................................................................................................................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................CTCCCAGTTGCCCACACAGGAT.............................................................................................................................................................................................................................................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................GAGCCTCTTCGACTCCCAGTTGCC.......................................................................................................................................................................................................................................................................	24	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................CTCCCAGTTGCCCACACAGGATG............................................................................................................................................................................................................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................CGACTCCCAGTTGCCCACACAGGATGA------------------------------------------.................................................................................................................................................................................................................	27	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1
..................................GAGGAAGCTCAAGCCCTTGGGTATTGA......................................................................................................................................................................................................................................................................................................................................	27	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................C-----TCA---ATGACATATCCATGCTCGT........................................................................................................................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................AATGTAACGCTTGGTGATTTGAGC...........................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
.......................................AGCTCAAGCCCTTGGGTATTGA......................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................GCCCACACAGGATGA------------------------------------------TCTTCAGTGC.......................................................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
...........................................CAAGCCCTTGGGTATTGAGTTCGCA...............................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................TTGGTGATTTGAGCCTCTTC.....................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................TTTGAGCCTCTTCGACTCCCAGTT..........................................................................................................................................................................................................................................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................G-------TGGAC----------------------------------------------AATATTGGGCATT..................	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................ATGA------------------------------------------TCTTCAGTGCC-----TCA---AT.........................................................................................................................................................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................ATGTAACGCTTGGTGATTTG..............................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................AGTTGCCCACACAGGATGA------------------------------------------TCTTCAGT.........................................................................................................................................................................................................	27	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
..............................................GCCCTTGGGTATTGAGTTCGCA...............................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................GGAC----------------------------------------------AATATTGGGCATTGAA...............	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................GTAACGCTTGGTGATTTG..............................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
...............................................CCCTTGGGTATTGAGTTCGCAGACTACT........................................................................................................................................................................................................................................................................................................................	28	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................GCTC-------------------------------------------------------------TCCAAGG-------TGGAC----------------------------------------------AATAT..........................	21	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................CAAGG-------TGGAC----------------------------------------------AATATTGGGC.....................	20	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................TGA------------------------------------------TCTTCAGTGCC-----TCA---ATGAC......................................................................................................................................................................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
................................................CCTTGGGTATTGAGTTCGC................................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
.................................................CTTGGGTATTGAGTTCGCAGACTACTT.......................................................................................................................................................................................................................................................................................................................	27	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
..............................................GCCCTTGGGTATTGAGTTCGCAGAC............................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
..............................................GCCCTTGGGTATTGAGTTCGC................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................ACTCCCAGTTGCCCACACAGGATG............................................................................................................................................................................................................................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................CGACTCCCAGTTGCCCACACAGGAT.............................................................................................................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
.............................................AGCCCTTGGGTATTGAGTTCGCAGAC............................................................................................................................................................................................................................................................................................................................	26	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0
.............................................................GTTCGCAGACTACTTTCAAAAT................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................G-------TGGAC----------------------------------------------AATATTGGGCATTG.................	20	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................GTAACGCTTGGTGATTTGAGC...........................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................A------------------------------------------TCTTCAGTGCC-----TCA---ATGACATATC.................................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................GTTCGCAGACTACTTTCAAAATG...............................................................................................................................................................................................................................................................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
......................................................GTATTGAGTTCGCAGACTACTTTCA....................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................GGCTC-------------------------------------------------------------TCCAAGG-------TGGAC----------------------------------------------AATATTGGGC.....................	27	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................TGCCCACACAGGATGA------------------------------------------TCT..............................................................................................................................................................................................................	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................ATGTAACGCTTGGTGATTTGAGC...........................................................................................................................................................................................................................................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................GGTGATTTGAGCCTCTTCG....................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................AAATGTAACGCTTGGTGATTTGA.............................................................................................................................................................................................................................................................................................	23	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................GCC-----TCA---ATGACATATCCATGCTC..........................................................................................................................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
....................................GGAAGCTCAAGCCCTTGGGTAT.........................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................GATGA------------------------------------------TCTTCAGTGCC-----TCA---AT.........................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................TGCCCACACAGGATGA------------------------------------------TCTTCAGTG........................................................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................AGACTACTTTCAAAATGTAACGCTTGGT....................................................................................................................................................................................................................................................................................................	28	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................C-------------------------------------------------------------TCCAAGG-------TGGAC----------------------------------------------AATATTGGG......................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................TAACGCTTGGTGATTTGA.............................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................CTACTTTCAAAATGTAACGCTTGGT....................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................C----------------------------------------------AATATTGGGCATTGAAAAT............	20	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................AATATTGGGCATTGAAAATG...........	20	5	0.20	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

TTAGTT------TT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATAGC-------------------CGT----------------------------------------------------------------TAAAGTAAAAGGGTATTCTAGATTGG-------TTGAAAAGTATGTAACAGGCAGAAGGAAGCCTTCCCGACCATATAAAGTA----------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dpe_780

scaffold_147:54980-55130 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-43.1	-43.1	-42.9