dpe_776

Name	Class	Family	Strand
TART_DV	LINE	Jockey	-

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## ATCAGCAAATCCAACTGAACATTTATGTAAAAATCCTCGACTTATTTCATGTCTCGCCACGCCAACAACCAACAGCAGCAGCAGGAATCACCACAACATCAGCAGCAGCACCAGTACCTGGAGGCCCTGCGTGTCTTCAACAACAACAACAGAAGCAACAATTGACAGACACAGAAACAACTTCTACCCAAATACTTTCAGCCAGCGAGAAGAACATCAGCAGCAGTAGCAGCAGCAGCGGAAGCCGCCAT **********************************************************************************************.....((((..((.((((...))))..)).))))((((((((((.....................)))).))))))((((.....))))....************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M042 female body	V042 embryo
..........................................................................................................................................................................ACAGAAACAACTTCTACCC..............................................................	19	0	1	2.00	2	2	0
....................................................................................................................................................................................................................................GCAGCAGCAGCGGAAGCCGCCA.	22	0	1	1.00	1	1	0
.......................................................................................................................................................................GACACAGAAACAACTTCTACCC..............................................................	22	0	1	1.00	1	1	0
...............................................................................................................................................................................................ATACTTTCAGCCAGCGAGAAGA......................................	22	0	1	1.00	1	1	0
................................................................................................CATCAGCAGCAGCACCAGT........................................................................................................................................	19	0	1	1.00	1	0	1
..............................................................................................................................................................................................................................GCAGTAGCAGCAGCATCGGAA........	21	1	2	0.50	1	1	0
.............................................................................................................................................................................................................................AGCAGTAGCAGCAGCATCGGA.........	21	1	14	0.07	1	1	0

TAGTCGTTTAGGTTGACTTGTAAATACATTTTTAGGAGCTGAATAAAGTACAGAGCGGTGCGGTTGTTGGTTGTCGTCGTCGTCCTTAGTGGTGTTGTAGTCGTCGTCGTGGTCATGGACCTCCGGGACGCACAGAAGTTGTTGTTGTTGTCTTCGTTGTTAACTGTCTGTGTCTTTGTTGAAGATGGGTTTATGAAAGTCGGTCGCTCTTCTTGTAGTCGTCGTCATCGTCGTCGTCGCCTTCGGCGGTA ************************************************************.....((((..((.((((...))))..)).))))((((((((((.....................)))).))))))((((.....))))....**********************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V111 male body	V042 embryo	V057 head	M042 female body
..............................................................................GTCGCGGTTAGTGGTGTTGTAG.......................................................................................................................................................	22	3	6	0.33	2	2	0	0	0
.............................................................................................................................................TTGTTGTTGTGTTCGTTGCTA.........................................................................................	21	2	5	0.20	1	0	0	1	0
...................................................................................................................................AAAGAAGTTGTTGTTGTTGT....................................................................................................	20	1	6	0.17	1	0	0	0	1
................................................................................CGCCCTGAATGGTGTTGTAG.......................................................................................................................................................	20	3	8	0.13	1	0	1	0	0
............................................................................................TGTTGTAGTCGTCGTCGT.............................................................................................................................................	18	0	10	0.10	1	0	1	0	0
...............................................................................TCGCGGTTAGTGGTGTTGTAG.......................................................................................................................................................	21	3	12	0.08	1	1	0	0	0

Species	Coordinate	ID	Alignment
droPer2	scaffold_14:2068060-2068310 -	dpe_776	A--TCAGCAAATCCAACTGAACATTTATGTA-AAAATCCTCGACTTATTTCATGTCTCGCCACGC------------C-----AA---C------AACC---AA--------------------------------------------CAGCAGCAG---CAG--------------------------GAATCACCACAACATCAG---------CAGCAG----------------------------------------------------CACCAGTACCTG---GAGGCCCTGCGTGT----------------------------CTTCAACAAC---AACAACAGAAGCAACAATTGA---------------------------------------------------CA---GACACAGAA--------------------------------------------------------------------------------------ACAACTTCTACCCAAATACTTTCAGCCAGCGA-GAAGAACAT------CAGC--------------------------------------------AGCAGTAG---CAGCAGCAGCGGAA-------GCCGCC---------A---------T
dp5	XL_group1a:5419082-5419347 -	dps_2524	A--TCAGCAAATCCAACTGAACATTTATGTA-AAAATCCTCGACTTATTTCATGTCTCGCCACGC------------C-----AA---C------AACC---AA--------------------------------------------CAGCAGCAG---CAG--------------------------GAACCACCACAACATCAG---------CAGCAG----------------------------------------------------CACCAGTACCTG---GAGCCCCTGCGTATC-------------------TTCCACAACAACAACAAC---AGCAACAGAAGCAACAATTGA---------------------------------------------------CA---GACACAGAAACC--------------------------------------------------------------------------------------TCTTCTAACCAAACACTTTCAGCCAGCGA-GAAGAACATCAGCGGCAGC--------------------------------------------AGCAGTAG---CAGCAGCAGCGGAA-------GCCGCC---------A---------T
droWil2	scf2_1100000007470:3-239 -		T--GCAACAACTGCAGCTGCA-ATTGATGCA-ACAA--------CAATTGCA-----------GC------------CACAGCAACAACAACAACAGCA---------------------------------------------------------------A--GAAAAGCCAGAGCAACAACAGCAGGAGCCACAGCAACATCAG---------CAGCAG----------------------------CAACAA---------------------CAACTGCAG---CAA------------------------CT---GCAGC------------------------------TACAATTGATGCAACAACA-----------------A------------------T--TGCA---GCCACAGCAA--------------------------------------------------------------------------------------CAACAAC----------------AACAGCAA-GAAAAG------------------------------------CCAGA-------GC-AACAACAGCAGGAG---CCACAGCAACATCA-------GCAGCA---------G---------C
droVir3	scaffold_13042:988699-989004 -	dvi_14234	A--ACACA-----------AACAATTAAA-A-CAAATACTCGCCTAATTTCATGTCTCACG---C------------CACAACAACAACAAC---AACA---A-CTG-TTAA---CTGTAGCAGCGCCTGCGACAACAACAACAGCAG-----------------CAGCAACAGCAACAA---------------------CAACAACA------------ACAACATCT-----------------------------------------------CAGCAGCAG---CAA------------------------CT---GCAG-TGCAACAACAACAAC---AACAACAGCAGCAACAATTCAAAACATTTCAATTACATTGCAGCTAGT-----------------------TCG---GCTCC----AACCGATGAG-----------------GACA-----------------------------------------------------------ACCCACCCGAGCTATCTC-----------------------------------------------------CCACA-------AC-AACAACAGCAGCAGCAACAGCAACAGCAGCA-------GCAACA---------G---------C
droMoj3	scaffold_6496:15488090-15488329 -		A--ACAGCAA---CAACTG------------------------------------------------------------CAGCAGCAGCAGC---AACA---A-TACCATAGCTATTGCAACAGCAGCAGCAACAACAGCAGCAG-----------------------C---------------AGCAGCAACAACCATAGCAACAG---------CAGTAA----------------------------------------------------CATTAACAGCAA---CAGTGCCAT----------------------------TGCAACAGCAACAAC---AACAACAAAAACGACAGCTGAAGGAGTAGCAAAAATACCATAACTATT--------------------------------------------------------------------------------------------------------------------------------------------------------GCAA-TAGCAACAGCAACTGCAGC--------------------------------------------AGCAACAG---CAATAGCAACGGCA-------ATCGCA---------G---------C
droGri2	scaffold_15106:75439-75673 -		A--GCAGCAA---CAGCAGCATCCTCATCATTCACTTG---GACACAATCC-GCACTTGCA--TC------------CGCATCACCCTCATCAACAAC----AG--------------------------------------------CAACAA--------------C---------------AGCAGCAACAACAACAGCAGCAG---------CAGCAG----------------------------------------------------CAACAACACCTG---CA------------------------TCAGCAACAGCAACAACAACAGCAGCAGCAA---CAGC--------------------------------------AACAG------CAGCAACA--------------------------------------------------------T--------CA----------------------------------------------------------------------T-GCTGCT------------------------------------CAGTTGGCTCACAC-GCTGTCATCAGCAG---CAGCAGCTGCTGCT-------GCCGCC---------G---------C
droAna3	scaffold_13417:2539751-2539980 -		C--CC----AGCCCAACACTACATTTATGTA-AAAATACTCGACTAATTTCATGTCTCGCTGCGC------------CACGCCAA------------CC---AA--------------------------------------------CAGCATCCG---CAA--CTCCAGGCCCAGCCA---------------------CCACAGGA------------GCACCAACT----------------------------------------------------------------------CACCACCA----------GCAGCAGCAACAGCAA--------------------------------------------------------------------------CAGCTC---C---A----------------------------------------------------------------------------GC----------A-GAAAACAATCCCTGACCAAGAACCA---G---GCCCA----------------GGCCAGACTACCATAAACAACTATAA----------TCCC-GCCCTCAG------------------CAATA-------ACTACT-------------------A
droBip1	scf7180000396003:37665-37898 -		A--TC-------CCAACAGTACATTTATGTG-AAAATACTCGACTAATTTCATGTCTCGCTACGC------------CACACCAC------------CA---AA--------------------------------------------CAGCATCCG---CAA--CACCAGTCTCAGCCA---------------------CACCAGGA------------GCAACAGCT----------------------------------------------------------------------CACCTCCA----GCATCTGCAGAAGCAGCAGCAGCAACAGCAGCAA---CCAA--------------------------------------AA---------------CAGCA---------------------------------------------------------------------------------------------------GAAAACAAGCTCAGATCAAGTACTTTCAGCCAGCAGT----------------AGC--------------------------------------------CGGACTAC---TATCAACAACAACA-------ACCCCG---------A---------C
droKik1	scf7180000302517:1129746-1129927 +		A--AAACCCAAGACAACAGCACATTTATGTA-AAAATACTCGACTAATTTCATGTTTCGTTACAACAACAAC---GCCACACCAA---C------AACAACAAA--------------------------------------------CAGCAGCAA---CAGCA-----------------------------------------------------ACC-------------------------------------------------------------CCA---GGAGCAGCTGCTCATCTTCA----G------C------------------A-------------------------------------------------------------------------------------------------A--------------------GGAG-ATCCTTCTTCTGGTAGCAGCAACAATAACAATACTAG-------------------------------------------------------------------------------------------------------------------------------------CACCA-------AA-----------------------A
droFic1	scf7180000454073:1676888-1677114 +		C--------AGTAAAACAGCACATTTATGTTTGAAATACTCGACTAATTTCATGTCTCGCCACGC------------CACAACAA------------CA---AA--------------------------------------------CAGCAGCAG---CAACA-----------------------------------------------------GCAG----------------------------CAGCAACAT------CAGCAGCAGCATCATCTGCAGCCACAT--------------------------------------------------------------------------------------------------------------------CAGCTGTTCA---GGTTCAAAATCCCGTGGAA-----------------GGATCCCCAG--------CA---------------------GA-GCTGA----A-GAAAGCGAACCCTAGTCAAATACTTTCAGCCAGCAGT-AA-------------------------------------------------------------------------TCAG---CATCA-------GATTCA-------------------G
droEle1	scf7180000490751:1055136-1055385 +		A--C---CCAGTACAACAGCACATTTATGTTAAAAATACTCGACTAATTTCATGTCTCGCGACGC------------CACAACAACAACTACAACAACA---AA--------------------------------------------CAGCAGCAG---CATCA--------------------------------------TCAT---------CAGCAG-------------------------------CTA---------------------CA-----------------------GC----TACAG---CAGCAACAGCTACAGCTACAGCTACAACAA---CAGC--------------------------------------AGCAGCAGCACCGACAACAGCAGATCA---ACCCGAAAAACCTGAGGAAGAAGG------A---AA--------------------------------------------------------------------------------------------------------------------------------------------------AGG-------------AG---CTCATCCACATCCAGAACTG------AC---GGAAACAAACTCCAA
droRho1	scf7180000761121:248942-249177 -		T--AAACCCAGTACAACAGCACATTTATGTTTAAAATAATCGACTAATTTCATGTCTTGCCACGC------------CACAACAACAACAAC---AACA---AA--------------------------------------------CAGCATCAT---CAGCA-----------------------------------------------------GCGG----------------------------CAGCAACAA------------------CA-----------------------GC----TACAGCATCAGCAGCAGCAACAGCTACAGCTACAGCAA---CAGC--------------------------------------TACAG------CAACAACATCTGCTCA---GCCCCAAAAACCTGAGGAAATA---GAAGAA---GA--------------------------------------------------------------------------------------------------------------------------------------------------AGG-------------AG---C---ACCACATCCAGAACTG------AC---GAA-----------A
droBia1	scf7180000302069:1199217-1199414 -		C--GAACCCTGAACAACAGCACATTTATGTT-AAAATACTCGACTAATTTCATGTTTCGCCACGC------------CACAACAA---C------AACA---AA--------------------------------------------CAGCAACTA---CAG-----------------------------------------CAG---------CACCAA----------------------------------------------------CAGCAGAAGCT---GGAA--------------------------------------------------------------------------------------------------------------------CAGCTGATCAGCAGCCCCAAAAGCGCCAGGAAGAAGGAGA--------------------------------------------------------------------------------------------GCCAGCAGA---------------------------------------------------------------AGCAGG-A--------GCCCCATCC-------------TCGCAGAGCAAAGCCCCTAA
droTak1	scf7180000415169:897457-897602 -		ATTAAACCCAGTACAACAGCACATTTATGTA-AAAATACTCGACTAATTTCATGTCTCGCCACGC------------CACAACAA---C------AACAAATAA--------------------------------------------CAGCAGCAT---CA-----------------------------------------TCAG---------CAGCAG----------------------------CAGCAATAAAAGCAACAACAGCA---GCAGCAGCT---GGAA--------------------------------------------------------------------------------------------------------------------CAGCTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
droEug1	scf7180000409109:49178-49378 -		T--AAACCCAATACAACAGCACATTTATGTA-AAAATACTCGACTAATTTCATGTTTCGCCACGC------------CACAACAACAACAAC---AACA---AA--------------------------------------------CAGCAGTAT---CATCA-----------------------------------------------------GCAG----------------------------CAGCAATAACAACATCAGCAGCAACATCAGTTGAA---GGAA--------------------------------------------------------------------------------------------------------------------CAGCTGATCA---GCCCCAAAAAGCTCAGCAAAAA---GAAGGA---GA--------------------------------------------------------------------------------------------------------------------------------------------------AGG-------------A--------GCACAATTG-------------AC---GAAAA---------C
dm3	chrX:19400443-19400641 +		C--------AGTAAAACA-AACATTTATGTT-CGAATACTCCACTAATTTCATGTCTTGCCACGC------------TACGAAAA---C------AACA---AA--------------------------------------------CAGCAGCAG---A---------------------------------------------------------------------------------------------------------------------------A---GGAA--------------------------------------------------------------------------------------------------------------------CAGCTGATCA---GCCCCAAAAATCACAGAGAGAAGGCGAAGTGAAA--GGAGCATCAT--------CA---------------------GAAGCCCAACGAACAAAAGCAAACCCAAACCAGATACTTTCAGCCAGCAAC----------------A-----------------------------------------------------------GCAGC---------------------------------------T
droSim2	x:9977400-9977588 -		C--TT----G---CAACT------------------------------------------------------------GCAGCAC---------------------------------------------------------------CAGCAG-----------CAGCAGCAGCAGCAT---------------------CGACAACA------------ACAACAGCCAAGCGGCGGCAAGTCAGCAGCAGCAA------------------CAAGAACACCAG---CA------------------------------ATCACAAAAACAACAGCAA------------ACGCTGCAGTCGCAGCAGCAGCA----------------------------------------------GTCGCA---------------------------------------------------------------------------------------------------------------------GCAG-CAGCAGCAG------CAGC--------------------------------------------TGCAGTAG---CAGCAGCAGCAGCA-------GCAGCA---------A---------C
droSec2	scaffold_21:362888-363084 -		T--C----------------------------------------------------GCGCCACAC-------CCAAATTCAGCAA---------------------------------------------------------------CAGCAGCAG-----------CAGCAACAGCAG---------------------CAACAGCAGCAACAGCAGCAG-------------------------------CAA------------------CA------GCAG------CAG---------------------CAGCAGCTGCAACAGCAACAGCAAC---AGCAACAGCAGCAG-------------------------------------GCTGCAGCGTCGA---------T---GCCC-GAATATCA----------------------------------------------------------------------------------------------------------GAGGGCAGC----------------AGC--------------------------------------------TCGAGCGG---CTGTGGCGGCAGTA-------TCGGC------GGGTAAAGGCAATGT
droYak3	X:11935880-11936041 -		C--CC----AGTAAAGCAGCACATTTATGTT-CAAATACTCCACTAATTTCATGTCTTGCCACGC------------TACAACAA---C------AACAATACA--------------------------------------------CAGCAGCAG---CAGGA-----------------------------------------------------GCA-------------------------------------------------------------GAA---GGAA--------------------------------------------------------------------------------------------------------------------CAGCTGATCA---GCCCCAAAAATCGCAGAGAGAAGGAGAAGCGAAA--GGAGCATTAT--------CA---------------------GA-------------------------------------------------------------------------------------------------------------------------------------AGC---------------------------------C
droEre2	scaffold_4690:9637973-9638132 +		C--------AGTAAAACAGCACATTTATGTT-CAAATACTCCACTAATTTCATGTCTTGCCTCGC------------TACAACAA---C------AACA---AA--------------------------------------------CAGCAGCCTCATCAGCA-----------------------------------------------------ACA-------------------------------------------------------------GAA---GGAA--------------------------------------------------------------------------------------------------------------------CAGCTGGTCA---GCCCCAAAAATCGCAGAGAGAAGGAGAAGCGAAA--GGAGCATCCT--------TA---------------------GA-------------------------------------------------------------------------------------------------------------------------------------AGC---------------------------------C

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droPer2

A--TCAGCAAATCCAACTGAACATTTATGTA-AAAATCCTCGACTTATTTCATGTCTCGCCACGC------------C-----AA---C------AACC---AA--------------------------------------------CAGCAGCAG---CAG--------------------------GAATCACCACAACATCAG---------CAGCAG----------------------------------------------------CACCAGTACCTG---GAGGCCCTGCGTGT----------------------------CTTCAACAAC---AACAACAGAAGCAACAATTGA---------------------------------------------------CA---GACACAGAA--------------------------------------------------------------------------------------ACAACTTCTACCCAAATACTTTCAGCCAGCGA-GAAGAACAT------CAGC--------------------------------------------AGCAGTAG---CAGCAGCAGCGGAA-------GCCGCC---------A---------T	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGAA--------------------------------------------------------------------------------------ACAACTTCTACCC.............................................................................................................................................	19	1	2.00	2	0	2	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---CAGCAGCAGCGGAA-------GCCGCC---------A---------.	22	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GACACAGAA--------------------------------------------------------------------------------------ACAACTTCTACCC.............................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTTCAGCCAGCGA-GAAGA....................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................CATCAG---------CAGCAG----------------------------------------------------CACCAGT.....................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0

dp5

A--TCAGCAAATCCAACTGAACATTTATGTA-AAAATCCTCGACTTATTTCATGTCTCGCCACGC------------C-----AA---C------AACC---AA--------------------------------------------CAGCAGCAG---CAG--------------------------GAACCACCACAACATCAG---------CAGCAG----------------------------------------------------CACCAGTACCTG---GAGCCCCTGCGTATC-------------------TTCCACAACAACAACAAC---AGCAACAGAAGCAACAATTGA---------------------------------------------------CA---GACACAGAAACC--------------------------------------------------------------------------------------TCTTCTAACCAAACACTTTCAGCCAGCGA-GAAGAACATCAGCGGCAGC--------------------------------------------AGCAGTAG---CAGCAGCAGCGGAA-------GCCGCC---------A---------T	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCCAGCGA-GAAGAACATCAGCG...........................................................................................................	24	1	2.00	2	0	1	1	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---CAGCAGCAGCGGAA-------GCCGC.....................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................ACAAC---AGCAACAGAAGCAACAATT...................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................AACAATTGA---------------------------------------------------CA---GACACAGA.................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................CAATTGA---------------------------------------------------CA---GACACAGAAACC--------------------------------------------------------------------------------------TCTTCCT................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................GCAACAATTGA---------------------------------------------------CA---GACACAGA.................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................TG---GAGCCCCTGCGTATC-------------------T..........................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0	0	0	0
............................................................CACGC------------C-----AA---C------AACC---AA--------------------------------------------CAGCAGCAG---CAG--------------------------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................CAACAATTGA---------------------------------------------------CA---GACACAGAAA...............................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACACTTTCAGCCAGCGA-GAAGAAC..................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAACATCAGCGGCAGC--------------------------------------------AG........................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCGGCAGC--------------------------------------------AGCAGTAG---CAGCAGC........................................	25	2	0.50	1	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAGCGGCAGC--------------------------------------------AGCAGTA...................................................	20	3	0.33	1	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC--------------------------------------------AGCAGTAG---CAGCAGCAGCGG...................................	23	4	0.25	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................AA--------------------------------------------CAGCAGCAG---CAG--------------------------GAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	5	0.20	1	0	0	0	0	1	0	0	0	0	0
............................................................................................................................................................................................................CAG---------CAGCAG----------------------------------------------------CACCAGTACT..................................................................................................................................................................................................................................................................................................................................................................................................	19	18	0.06	1	0	0	0	1	0	0	0	0	0	0

droWil2

T--GCAACAACTGCAGCTGCA-ATTGATGCA-ACAA--------CAATTGCA-----------GC------------CACAGCAACAACAACAACAGCA---------------------------------------------------------------A--GAAAAGCCAGAGCAACAACAGCAGGAGCCACAGCAACATCAG---------CAGCAG----------------------------CAACAA---------------------CAACTGCAG---CAA------------------------CT---GCAGC------------------------------TACAATTGATGCAACAACA-----------------A------------------T--TGCA---GCCACAGCAA--------------------------------------------------------------------------------------CAACAAC----------------AACAGCAA-GAAAAG------------------------------------CCAGA-------GC-AACAACAGCAGGAG---CCACAGCAACATCA-------GCAGCA---------G---------C	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.........................................................................................................................................................................AGCCAGAGCAACAACAGCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	13	10.08	131	0	56	1	74	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG------------------------------------CCAGA-------GC-AACAACAGCAGG....................................................	21	13	10.08	131	0	56	1	74	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG------------------------------------CCAGA-------GC-AACAACAGCAGGA...................................................	22	13	4.77	62	0	55	0	7	0
.........................................................................................................................................................................AGCCAGAGCAACAACAGCAGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	13	4.77	62	0	55	0	7	0
.......................................................................................................................................................................................................................................................................................................................................................................AATTGATGCAACAACA-----------------A------------------T--TGCA---GC.......................................................................................................................................................................................................................................................	24	13	2.69	35	0	35	0	0	0
....................A-ATTGATGCA-ACAA--------CAATTGCA-----------GC------------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	13	2.69	35	0	35	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG------------------------------------CCAGA-------GC-AACAACAGCAGGAG---...............................................	23	13	2.31	30	0	27	2	1	0
.........................................................................................................................................................................AGCCAGAGCAACAACAGCAGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	13	2.31	30	0	27	2	1	0
.........................................................................................................................................................................AGCCAGAGCAACAACAGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	13	1.62	21	0	10	0	11	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG------------------------------------CCAGA-------GC-AACAACAGCAG.....................................................	20	13	1.62	21	0	10	0	11	0
.........................................................................................................................................................................AGCCAGAGCAACAACAGCAGGAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	13	1.15	15	0	7	0	7	1
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG------------------------------------CCAGA-------GC-AACAACAGCAGGAG---C..............................................	24	13	1.15	15	0	7	0	7	1
.........................................................................................................................................................................AGCCAGAGCAACAACAGCAGGAGCCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	13	1.00	13	0	12	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG------------------------------------CCAGA-------GC-AACAACAGCAGGAG---CCA............................................	26	13	1.00	13	0	12	0	1	0
.........................................................................................................................................................................AGCCAGAGCAACAACAGCAGGAGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	13	0.69	9	0	8	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................AATTGATGCAACAACA-----------------A------------------T--TGCA---GCC......................................................................................................................................................................................................................................................	25	13	0.69	9	0	9	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG------------------------------------CCAGA-------GC-AACAACAGCAGGAG---CC.............................................	25	13	0.69	9	0	8	0	1	0
....................A-ATTGATGCA-ACAA--------CAATTGCA-----------GC------------C................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	13	0.69	9	0	9	0	0	0
............................................................................................................................................................................CAGAGCAACAACAGCAGGAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	13	0.54	7	0	4	0	3	0
.......................................................................................................................................................................................................................................................................................................................................................................AATTGATGCAACAACA-----------------A------------------T--TGCA---G........................................................................................................................................................................................................................................................	23	13	0.54	7	0	7	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGA-------GC-AACAACAGCAGGAG---C..............................................	21	13	0.54	7	0	4	0	3	0
.........................................................................................................................................................................AGCCAGAGCAACAACAGCAGGAGCCAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	13	0.54	7	0	7	0	0	0
....................A-ATTGATGCA-ACAA--------CAATTGCA-----------GC------------CA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	13	0.54	7	0	7	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................AATTGATGCAACAACA-----------------A------------------T--TGCA---GCCA.....................................................................................................................................................................................................................................................	26	13	0.54	7	0	7	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG------------------------------------CCAGA-------GC-AACAACAGCAGGAG---CCAC...........................................	27	13	0.54	7	0	7	0	0	0
....................A-ATTGATGCA-ACAA--------CAATTGCA-----------G..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	13	0.54	7	0	7	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGA-------GC-AACAACAGCAGGAG---CCA............................................	23	13	0.46	6	0	6	0	0	0
............................................................................................................................................................................CAGAGCAACAACAGCAGGAGCCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	13	0.46	6	0	6	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................ATTGATGCAACAACA-----------------A------------------T--TGCA---GC.......................................................................................................................................................................................................................................................	23	13	0.38	5	0	5	0	0	0
...............................................................................................................................................................................AGCAACAACAGCAGGAGCCACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	13	0.38	5	0	5	0	0	0
......................ATTGATGCA-ACAA--------CAATTGCA-----------GC------------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	13	0.38	5	0	5	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------GC-AACAACAGCAGGAG---CCACAG.........................................	23	13	0.38	5	0	5	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG------------------------------------CCAGA-------GC-AACAACAGCA......................................................	19	14	0.36	5	0	1	0	3	1
.........................................................................................................................................................................AGCCAGAGCAACAACAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	14	0.36	5	0	1	0	3	1
..........................................................................................................................................................................GCCAGAGCAACAACAGCAGGAGCCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	13	0.31	4	0	4	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------------------------------CCAGA-------GC-AACAACAGCAGGAG---CCA............................................	25	13	0.31	4	0	4	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG------------------------------------CCAGA-------GC-AACAACAGC.......................................................	18	14	0.29	4	0	1	0	3	0
.........................................................................................................................................................................AGCCAGAGCAACAACAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	14	0.29	4	0	1	0	3	0
......................ATTGATGCA-ACAA--------CAATTGCA-----------G..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	13	0.23	3	0	3	0	0	0
.....................................................................................................................................................................................AACAGCAGGAGCCACAGCAACATC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	13	0.23	3	0	3	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................AATTGATGCAACAACA-----------------A------------------T--TGCA---.........................................................................................................................................................................................................................................................	22	13	0.23	3	0	3	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................ATTGATGCAACAACA-----------------A------------------T--TGCA---G........................................................................................................................................................................................................................................................	22	13	0.23	3	0	3	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGA-------GC-AACAACAGCAGGAG---CC.............................................	22	13	0.23	3	0	2	0	1	0
......................ATTGATGCA-ACAA--------CAATTGCA-----------GC------------CA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	13	0.23	3	0	3	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................ATTGATGCAACAACA-----------------A------------------T--TGCA---GCCA.....................................................................................................................................................................................................................................................	25	13	0.23	3	0	3	0	0	0
....................A-ATTGATGCA-ACAA--------CAATTGCA-----------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	13	0.23	3	0	3	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGGAG---CCACAGCAACATC..................................	24	13	0.23	3	0	3	0	0	0
............................................................................................................................................................................CAGAGCAACAACAGCAGGAGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	13	0.23	3	0	2	0	1	0
..........................................................................................................................................................................................................ATCAG---------CAGCAG----------------------------CAACAA---------------------CAACTG...................................................................................................................................................................................................................................................................................................................................................................................................	23	6	0.17	1	0	1	0	0	0
..............................................................................................................................................................................................AGCCACAGCAACATCAG---------CAGCAG----------------------------CAAC................................................................................................................................................................................................................................................................................................................................................................................................................................	27	12	0.17	2	0	1	0	1	0
.................................................................................................................................................................................CAACAACAGCAGGAGCCACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	13	0.15	2	0	0	0	2	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------GC-AACAACAGCAGGAG---CCACA..........................................	22	13	0.15	2	0	2	0	0	0
......................................................................................................................................................................AAAAGCCAGAGCAACAACAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	13	0.15	2	0	1	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAG------------------------------------CCAGA-------GC-AACAACAGCA......................................................	22	13	0.15	2	0	1	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-AACAACAGCAGGAG---CCACAG.........................................	21	13	0.15	2	0	0	0	2	0
......................................................................................................................................................................AAAAGCCAGAGCAACAACAGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	13	0.15	2	0	2	0	0	0
..........................................................................................................................................................................GCCAGAGCAACAACAGCAGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	13	0.15	2	0	2	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------------------------------CCAGA-------GC-AACAACAGCAGG....................................................	20	13	0.15	2	0	2	0	0	0
........................TGATGCA-ACAA--------CAATTGCA-----------GC------------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	13	0.15	2	0	2	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAG------------------------------------CCAGA-------GC-AACAACAGCAG.....................................................	23	13	0.15	2	0	2	0	0	0
...............................................................................................................................................................................AGCAACAACAGCAGGAGCCACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	13	0.15	2	0	2	0	0	0
..........................................................................................................................................................................GCCAGAGCAACAACAGCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	13	0.15	2	0	2	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGGAG---CCACAGCAACA....................................	22	13	0.15	2	0	2	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------------------------------CCAGA-------GC-AACAACAGCAGGAG---...............................................	22	13	0.15	2	0	2	0	0	0
.....................................................................................................................................................................................AACAGCAGGAGCCACAGCAACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	13	0.15	2	0	2	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................TGATGCAACAACA-----------------A------------------T--TGCA---GC.......................................................................................................................................................................................................................................................	21	13	0.15	2	0	2	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................CAA--------------------------------------------------------------------------------------CAACAAC----------------AACAGCAA-GAAA.....................................................................................................................	22	20	0.10	2	0	0	0	2	0
..................................................................................CAACAACAACAACAGCA---------------------------------------------------------------A--GAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	2	0
....................................................................................................................................................................................................................................................................................................................................GC------------------------------TACAATTGATGCAACAACA-----------------A------------------T--TG..............................................................................................................................................................................................................................................................	25	12	0.08	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................CAA--------------------------------------------------------------------------------------CAACAAC----------------AACAGCAA-GAAAAG------------------------------------CC.............................................................................	26	12	0.08	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAA--------------------------------------------------------------------------------------CAACAAC----------------AACAGCAA-GAAA.....................................................................................................................	24	12	0.08	1	0	0	0	1	0
................................................................................AGCAACAACAACAACAGCA---------------------------------------------------------------A--GAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	12	0.08	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGCAA--------------------------------------------------------------------------------------CAACAAC----------------AACAGCAA-GAA......................................................................................................................	26	12	0.08	1	0	1	0	0	0
.............................................................................CACAGCAACAACAACAACAGCA---------------------------------------------------------------A--G........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	12	0.08	1	0	1	0	0	0
.............................................................................CACAGCAACAACAACAACAGCA---------------------------------------------------------------A--GAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	12	0.08	1	0	1	0	0	0
..................................................................................CAACAACAACAACAGCA---------------------------------------------------------------A--GAAAAGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	12	0.08	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGCAA--------------------------------------------------------------------------------------CAACAAC----------------AACAGCAA-G........................................................................................................................	24	12	0.08	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------GC-AACAACAGCAGGAG---CCACAGCA.......................................	25	13	0.08	1	0	1	0	0	0
..............................................................................................................................................................................GAGCAACAACAGCAGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	13	0.08	1	0	1	0	0	0
............................................................................................................................................................................CAGAGCAACAACAGCAGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	13	0.08	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGA-------GC-AACAACAGCAGGAG---CCAC...........................................	23	13	0.08	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGA-------GC-AACAACAGCAGGAG---CCACAGC........................................	27	13	0.08	1	0	0	0	1	0
.................................................................................................................................................................................CAACAACAGCAGGAGCCACAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	13	0.08	1	0	1	0	0	0
............................................................................................................................................................................CAGAGCAACAACAGCAGGAGCCACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	13	0.08	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------GC-AACAACAGCAGGAG---CCA............................................	20	13	0.08	1	0	1	0	0	0
..................................................................................................................................................................................AACAACAGCAGGAGCCACAGCAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	13	0.08	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAG------------------------------------CCAGA-------GC-AACAACAGCAGGAG---C..............................................	27	13	0.08	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------GC-AACAACAGCAGGAG---CCACAGCAAC.....................................	27	13	0.08	1	0	1	0	0	0
...............................................................................................................................................................................AGCAACAACAGCAGGAGCCACAGCAACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	13	0.08	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................GATGCAACAACA-----------------A------------------T--TGCA---GC.......................................................................................................................................................................................................................................................	20	13	0.08	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-AACAACAGCAGGAG---CCACAGCA.......................................	23	13	0.08	1	0	1	0	0	0
......................ATTGATGCA-ACAA--------CAATTGCA-----------GC------------C................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	13	0.08	1	0	1	0	0	0
.............................................................................................................................................................................AGAGCAACAACAGCAGGAGCCAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	13	0.08	1	0	1	0	0	0
............................................................................................................................................................................CAGAGCAACAACAGCAGGAGCCACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	13	0.08	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAG------------------------------------CCAGA-------GC-AACAACAGCAGGA...................................................	24	13	0.08	1	0	1	0	0	0
.........................................................................................................................................................................AGCCAGAGCAACAACAGCAGGAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	13	0.08	1	0	0	1	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCAGGAG---CCACAGT........................................	21	13	0.08	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-AACAACAGCAGGAG---CCACAGCAA......................................	24	13	0.08	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAG------------------------------------CCAGA-------GC-AACAACAGCA......................................................	21	13	0.08	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------------------------------CCAGA-------GC-AACAACAGCAGGA...................................................	21	13	0.08	1	0	1	0	0	0
...............................................................................................................................................................................AGCAACAACAGCAGGAGCCACAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	13	0.08	1	0	1	0	0	0
............................................................................................................................................................................CAGAGCAACAACAGCAGGAGCCACAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	13	0.08	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG------------------------------------CCAGA-------GC-AACAACAGCAGGAG---T..............................................	24	13	0.08	1	0	0	1	0	0
......................ATTGATGCA-ACAA--------CAATTGCA-----------GC------------CAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	13	0.08	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------GC-AACAACAGCAGGAG---CCACAGC........................................	24	13	0.08	1	0	0	0	1	0
......................................................................................................................................................................AAAAGCCAGAGCAACAACAGCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	13	0.08	1	0	1	0	0	0
...............................................................................................................................................................................AGCAACAACAGCAGGAGCCACAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	13	0.08	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------------------------------CCAGA-------GC-AACAACAGCAG.....................................................	19	13	0.08	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................ATTGATGCAACAACA-----------------A------------------T--TG..............................................................................................................................................................................................................................................................	19	13	0.08	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-GAAAAG------------------------------------CCAGA-------GC-AACAACAGCA......................................................	24	13	0.08	1	0	0	0	0	1
.......................................................................................................................................................................................................................................................................................................................................................................AATTGATGCAACAACA-----------------A------------------T--TGC.............................................................................................................................................................................................................................................................	21	13	0.08	1	0	1	0	0	0
..................................................................................................................................................................A--GAAAAGCCAGAGCAACAACAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	13	0.08	1	0	0	0	0	1
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGA-------GC-AACAACAGCAGGAG---CCG............................................	23	13	0.08	1	0	1	0	0	0
.......................................................................................................................................................................AAAGCCAGAGCAACAACAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	13	0.08	1	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-------GC-AACAACAGCAGGAG---...............................................	18	13	0.08	1	0	1	0	0	0
.........................GATGCA-ACAA--------CAATTGCA-----------GC------------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	13	0.08	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................AATTGATGCAACAACA-----------------A------------------T--TGCA---GCCACA...................................................................................................................................................................................................................................................	28	13	0.08	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCAGGAG---CCACAGCAAC.....................................	24	13	0.08	1	0	1	0	0	0
..........................................................................................................................................................................GCCAGAGCAACAACAGCAGGAGCCAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	13	0.08	1	0	1	0	0	0
...............................................................................................................................................................................AGCAACAACAGCAGGAGCCACAGCAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	13	0.08	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAA-GAAAAG------------------------------------CCAGA-------GC-AACAAC..........................................................	26	13	0.08	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------GC-AACAACAGCAGGAG---CCACAGCAACA....................................	28	13	0.08	1	0	1	0	0	0
......................ATTGATGCA-ACAA--------CAATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	13	0.08	1	0	1	0	0	0
............................................................................................................................................................................CAGAGCAACAACAGCAGGAGCCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	13	0.08	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................ATTGATGCAACAACA-----------------A------------------T--TGCA---GCCAT....................................................................................................................................................................................................................................................	26	13	0.08	1	0	1	0	0	0
.........................................................................................................................................................................AGCCAGAGCAACAACAGCAGGAGCCACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	13	0.08	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG------------------------------------CCAGA-------GC-AACAACAGCAGGAG---CCACA..........................................	28	13	0.08	1	0	1	0	0	0
.................................................................................................................................................................................CAACAACAGCAGGAGCCACAGCAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	13	0.08	1	0	0	0	1	0
....................A-ATTGATGCA-ACAA--------CAATTGCA-----------GC------------A................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	13	0.08	1	0	1	0	0	0
.............................................................................................ACAGCA---------------------------------------------------------------A--GAAAAGCCAGAGCAACAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	13	0.08	1	0	1	0	0	0
..........................................................................................................................................................................GCCAGAGCAACAACAGCAGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	13	0.08	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAG------------------------------------CCAGA-------GC-AACAACAGCAGG....................................................	24	13	0.08	1	0	1	0	0	0
..........................................................................................................................................................................GCCAGAGCAACAACAGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	13	0.08	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAG------------------------------------CCAGA-------GC-AACAACAGCAGGAG---C..............................................	26	13	0.08	1	0	0	0	1	0
.....................................................................................................................................................................................AACAGCAGGAGCCACAGCAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	13	0.08	1	0	0	0	0	1
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGA-------GC-AACAACAGCAGGAG---CCACAG.........................................	26	13	0.08	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................AATTGATGCAACAACA-----------------A------------------T--TGCA---GCA......................................................................................................................................................................................................................................................	25	13	0.08	1	0	1	0	0	0
....................A-ATTGATGCA-ACAA--------CAATTGCA-----------GC------------CACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	13	0.08	1	0	1	0	0	0
............................................................................................................................................................................CAGAGCAACAACAGCAGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	13	0.08	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGGAG---CCACAGCAA......................................	20	13	0.08	1	0	0	0	0	1
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------------------------------CCAGA-------GC-AACAACAGCAGGAG---CCAC...........................................	26	13	0.08	1	0	1	0	0	0
....................A-ATTGATGCA-ACAA--------CAATTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	13	0.08	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGA-------GC-AACAACAGCAGGA...................................................	19	13	0.08	1	0	1	0	0	0
.......................................................................................................................................................................AAAGCCAGAGCAACAACAGCAGGAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	13	0.08	1	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................ATTGATGCAACAACA-----------------A------------------T--TGCA---GCC......................................................................................................................................................................................................................................................	24	13	0.08	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGA-------GC-AACAACAGCAGGAG---CCACA..........................................	25	13	0.08	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGA-------GC-AACAACAGCAGGAG---...............................................	20	13	0.08	1	0	1	0	0	0
...............................................................................................................................................................................AGCAACAACAGCAGGAGCCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	13	0.08	1	0	1	0	0	0
..................................................................................................................................................................................AACAACAGCAGGAGCCACAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	13	0.08	1	0	1	0	0	0
......................................................................................................................................................................AAAAGCCAGAGCAACAACAGCAGGAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	13	0.08	1	0	1	0	0	0
.......................................................................................................................................................................AAAGCCAGAGCAACAACAGCAGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	13	0.08	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGA-------GC-AACAACAGCAGGA...................................................	18	14	0.07	1	0	1	0	0	0
...........................................................................................................................................................................................AGGAGCCACAGCAACATCAG---------CA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	14	0.07	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAG---CCACAGCAACATCA-------GCA.......................	22	14	0.07	1	0	0	0	1	0
.............................................................................................................................................................................AGAGCAACAACAGCAGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	14	0.07	1	0	1	0	0	0
...........................................................................................................................................................................................AGGAGCCACAGCAACATCAG---------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	14	0.07	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAG---CCACAGCAACATCA-------G.........................	20	14	0.07	1	0	1	0	0	0
...................................................A-----------GC------------CACAGCAACAACAACAACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	15	0.07	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................A---GCCACAGCAA--------------------------------------------------------------------------------------CAACAAC----------------AACA..............................................................................................................................	22	15	0.07	1	0	1	0	0	0
................................................................C------------CACAGCAACAACAACAACAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	16	0.06	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................CCACAGCAA--------------------------------------------------------------------------------------CAACAAC----------------AACAGC............................................................................................................................	22	16	0.06	1	0	0	0	1	0
.........................................................................................................................................................................AGCCAGAGCAACAACAGCAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	17	0.06	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG------------------------------------CCAGA-------GC-AACAACAGCAGC....................................................	21	17	0.06	1	0	0	0	1	0
.......................................................................................................................................................................................................AACATCAG---------CAGCAG----------------------------CAACAA---------------------CAAC.....................................................................................................................................................................................................................................................................................................................................................................................................	24	19	0.05	1	0	1	0	0	0
.....................................................................................CAACAACAACAGCA---------------------------------------------------------------A--GAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0
........................................................................................................................................................................................................ACATCAG---------CAGCAG----------------------------CAACA...............................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	1	0
.............................................................................CACAGCAACAACAACAACAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
......................................................................................................................................................................................................CAACATCAG---------CAGCAG----------------------------CAACAA---------------------C........................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAAC----------------AACAGCAA-GAAA.....................................................................................................................	19	20	0.05	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGCAA--------------------------------------------------------------------------------------CAACAAC----------------AACAGC............................................................................................................................	21	20	0.05	1	0	1	0	0	0
........................................................................................................................................................................................................ACATCAG---------CAGCAG----------------------------CAACAA---------------------C........................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0
....................................................................................................................................................................................................AGCAACATCAG---------CAGCAG----------------------------CAACAA---------------------T........................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0

droVir3

A--ACACA-----------AACAATTAAA-A-CAAATACTCGCCTAATTTCATGTCTCACG---C------------CACAACAACAACAAC---AACA---A-CTG-TTAA---CTGTAGCAGCGCCTGCGACAACAACAACAGCAG-----------------CAGCAACAGCAACAA---------------------CAACAACA------------ACAACATCT-----------------------------------------------CAGCAGCAG---CAA------------------------CT---GCAG-TGCAACAACAACAAC---AACAACAGCAGCAACAATTCAAAACATTTCAATTACATTGCAGCTAGT-----------------------TCG---GCTCC----AACCGATGAG-----------------GACA-----------------------------------------------------------ACCCACCCGAGCTATCTC-----------------------------------------------------CCACA-------AC-AACAACAGCAGCAGCAACAGCAACAGCAGCA-------GCAACA---------G---------C	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................ATTACATTGCAGCTAGT-----------------------TCG---GCTC.....................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGAG-----------------GACA-----------------------------------------------------------ACCCACCCGAGCTAT.......................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTATCTC-----------------------------------------------------CCACA-------AC-AACAACA.........................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAG-----------------GACA-----------------------------------------------------------ACCCACCCGAGCTATCTC-----------------------------------------------------C..............................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACA-----------------------------------------------------------ACCCACCCGAGCTATCTC-----------------------------------------------------CCAC...........................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TG-TTAA---CTGTAGCAGCGCCTGCGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTC-----------------------------------------------------CCACA-------AC-AACAACAGCA......................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................ATTGCAGCTAGT-----------------------TCG---GCTCC----AAC.............................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
...............................................................................................................................................................................................................................................................................................................................................................................................GCAGCTAGT-----------------------TCG---GCTCC----A...............................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................AA---CTGTAGCAGCGCCTGCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGCTATCTC-----------------------------------------------------CCACA-------AC-AACA............................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................TACATTGCAGCTAGT-----------------------TCG---GCTCC----AACCGAA.........................................................................................................................................................................................................................................	30	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACA-----------------------------------------------------------ACCCACCCGAGCTATCTC-----------------------------------------------------CCACA-------AC-................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTC-----------------------------------------------------CCACA-------AC-AACAACAGCAGCAGC.................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................ATTGCAGCTAGT-----------------------TCG---GCTCC----AACC............................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................TCT-----------------------------------------------CAGCAGCAG---CAA------------------------CT---GCAG-TGCAACA.................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................TCAATTACATTGCAGCTAGT-----------------------TCG---GCTCC----................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................ATCT-----------------------------------------------CAGCAGCAG---CAA------------------------CT---GCAG-T.......................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-----------------------------------------------------CCACA-------AC-AACAACAGCAGCAGC.................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......CA-----------AACAATTAAA-A-CAAATAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................CT-----------------------------------------------CAGCAGCAG---CAA------------------------CT---GCAG-TGC.....................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................CT---GCAG-TGCAACAACAACAA..........................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................AACAACAACAAC---AACAACAGCA............................................................................................................................................................................................................................................................................................................................	22	20	0.15	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................CGACAACAACAACAGCAG-----------------CAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	7	0.14	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................AACAACAGCAGCAACAATT...................................................................................................................................................................................................................................................................................................................	19	9	0.11	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAACAGCAGCA-------GCAACA---------...........	21	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAACAGCAACAGCAGCA-------..........................	28	17	0.06	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................AACAACAAC---AACA---A-CTG-TT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	17	0.06	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCAGCAGCAACAGCAACAG......................................	26	19	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................AACAGCAACAA---------------------CAACAACA------------ACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCAGCAACAGCAACAGCA....................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAACAGCAAC........................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................CAACAACAACAGCAG-----------------CAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................C------------CACAACAACAACAAC---AACA---A-C.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................CAACAA---------------------CAACAACA------------ACAACATC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................AACAACAGCAG-----------------CAGCAACAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................GCAACAACAACAAC---AACAACAGCA............................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACA-------AC-AACAACAGCAGCAGCA................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAGCAACAGCAGC..................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................CAACAACAACAAC---AACAACAGCAGCA.........................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCAGCAGCAACAGCA..........................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-------AC-AACAACAGCAGCAGCA................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAACAGCAACAGCAGCA-------..........................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAACAGCAA.........................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................AG-TGCAACAACAACAAC---AAC...................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACA-------AC-AACAACAGCAGC....................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................ACAACAACAGCAG-----------------CAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC-AACAACAGCAGCAGCA................................................	18	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................AACAGCAG-----------------CAGCAACAGCAACAA---------------------CAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................AACAGCAG-----------------CAGCAACAGCAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

A--ACAGCAA---CAACTG------------------------------------------------------------CAGCAGCAGCAGC---AACA---A-TACCATAGCTATTGCAACAGCAGCAGCAACAACAGCAGCAG-----------------------C---------------AGCAGCAACAACCATAGCAACAG---------CAGTAA----------------------------------------------------CATTAACAGCAA---CAGTGCCAT----------------------------TGCAACAGCAACAAC---AACAACAAAAACGACAGCTGAAGGAGTAGCAAAAATACCATAACTATT--------------------------------------------------------------------------------------------------------------------------------------------------------GCAA-TAGCAACAGCAACTGCAGC--------------------------------------------AGCAACAG---CAATAGCAACGGCA-------ATCGCA---------G---------C	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAACTGCAGC--------------------------------------------AGCA......................................................	22	20	0.10	2	0	0	0	1	1	0
A--ACAGCAA---CAACTG------------------------------------------------------------CAGCAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	14	0.07	1	0	0	0	0	1	0
..........................................................................................................................AGCAGCAGCAACAACAGCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0
...........................................................................................................................GCAGCAGCAACAACAGCAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAACTGCAGC--------------------------------------------AGC.......................................................	21	20	0.05	1	0	0	0	0	1	0

droGri2

A--GCAGCAA---CAGCAGCATCCTCATCATTCACTTG---GACACAATCC-GCACTTGCA--TC------------CGCATCACCCTCATCAACAAC----AG--------------------------------------------CAACAA--------------C---------------AGCAGCAACAACAACAGCAGCAG---------CAGCAG----------------------------------------------------CAACAACACCTG---CA------------------------TCAGCAACAGCAACAACAACAGCAGCAGCAA---CAGC--------------------------------------AACAG------CAGCAACA--------------------------------------------------------T--------CA----------------------------------------------------------------------T-GCTGCT------------------------------------CAGTTGGCTCACAC-GCTGTCATCAGCAG---CAGCAGCTGCTGCT-------GCCGCC---------G---------C	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.........................................................................................................................................................A--------------C---------------AGCAGCAACAACAACAGCAGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	2	0
........................................................................................................................................................................................................................................................................................................................................................AA---CAGC--------------------------------------AACAG------CAGCAACA--------------------------------------------------------T--------C..................................................................................................................................................................................................	21	14	0.07	1	1	0
........................................................................................................................................................................C---------------AGCAGCAACAACAACAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0
................................................................................................................................................................................................................................................................................................................................AACAGCAACAACAACAGCA...........................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	1	0
.......................................................................................................................................................................................................................................................................................................................................ACAACAACAGCAGCAGCAA---CAGC--------------------------------------A......................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0
.................................................................................................................................................................................................................................................................................................................................ACAGCAACAACAACAGCAGC.........................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0
............................................................................................AACAAC----AG--------------------------------------------CAACAA--------------C---------------AGCAGCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	1	0

droAna3

C--CC----AGCCCAACACTACATTTATGTA-AAAATACTCGACTAATTTCATGTCTCGCTGCGC------------CACGCCAA------------CC---AA--------------------------------------------CAGCATCCG---CAA--CTCCAGGCCCAGCCA---------------------CCACAGGA------------GCACCAACT----------------------------------------------------------------------CACCACCA----------GCAGCAGCAACAGCAA--------------------------------------------------------------------------CAGCTC---C---A----------------------------------------------------------------------------GC----------A-GAAAACAATCCCTGACCAAGAACCA---G---GCCCA----------------GGCCAGACTACCATAAACAACTATAA----------TCCC-GCCCTCAG------------------CAATA-------ACTACT-------------------A	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAAGAACCA---G---GCCCA----------------GGCC.....................................................................................................	22	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................ACCAACT----------------------------------------------------------------------CACCACCA----------GCAGCAGCAACAGC..................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................CTCCAGGCCCAGCCA---------------------CCACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................GCACCAACT----------------------------------------------------------------------CACCACCA----------GC..............................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................AGCCA---------------------CCACAGGA------------GCACCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
.....................................................GTCTCGCTGCGC------------CACGCCAA------------CC---AA--------------------------------------------CAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
.........................................................................................................................................................................................................CCACAGGA------------GCACCAACT----------------------------------------------------------------------CACCACCA----------GC..............................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAAGAACCA---G---GCCCA----------------GGCCA....................................................................................................	23	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAAGAACCA---G---GCCCA----------------GGC......................................................................................................	21	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................CT----------------------------------------------------------------------CACCACCA----------GCAGCAGCAACAGC..................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0
........................................................................................................................................................................CAGGCCCAGCCA---------------------CCACAGGA------------GCACC............................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
............................................................................................................................................................................................................................................................................................................CACCACCA----------GCAGCAGCAACAGCA.................................................................................................................................................................................................................................................................................................................................................	23	6	0.33	2	0	0	0	0	0	2
...............................................................................................................................................................................................................................................................................................................................CAGCAGCAACAGCAA--------------------------------------------------------------------------CAGCTC---C---.........................................................................................................................................................................................................................................................	22	4	0.25	1	0	0	0	0	0	1
..................................................................................................................................................................................................................................................................................................................................CAGCAACAGCAA--------------------------------------------------------------------------CAGCTC---C---.........................................................................................................................................................................................................................................................	19	7	0.14	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................CACCACCA----------GCAGCAGCAAC.....................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0

droBip1

A--TC-------CCAACAGTACATTTATGTG-AAAATACTCGACTAATTTCATGTCTCGCTACGC------------CACACCAC------------CA---AA--------------------------------------------CAGCATCCG---CAA--CACCAGTCTCAGCCA---------------------CACCAGGA------------GCAACAGCT----------------------------------------------------------------------CACCTCCA----GCATCTGCAGAAGCAGCAGCAGCAACAGCAGCAA---CCAA--------------------------------------AA---------------CAGCA---------------------------------------------------------------------------------------------------GAAAACAAGCTCAGATCAAGTACTTTCAGCCAGCAGT----------------AGC--------------------------------------------CGGACTAC---TATCAACAACAACA-------ACCCCG---------A---------C	Size	Hit Count	Total Norm	Total
No Reads

droKik1

A--AAACCCAAGACAACAGCACATTTATGTA-AAAATACTCGACTAATTTCATGTTTCGTTACAACAACAAC---GCCACACCAA---C------AACAACAAA--------------------------------------------CAGCAGCAA---CAGCA-----------------------------------------------------ACC-------------------------------------------------------------CCA---GGAGCAGCTGCTCATCTTCA----G------C------------------A-------------------------------------------------------------------------------------------------A--------------------GGAG-ATCCTTCTTCTGGTAGCAGCAACAATAACAATACTAG-------------------------------------------------------------------------------------------------------------------------------------CACCA-------AA-----------------------A	Size	Hit Count	Total Norm	Total
No Reads

droFic1

C--------AGTAAAACAGCACATTTATGTTTGAAATACTCGACTAATTTCATGTCTCGCCACGC------------CACAACAA------------CA---AA--------------------------------------------CAGCAGCAG---CAACA-----------------------------------------------------GCAG----------------------------CAGCAACAT------CAGCAGCAGCATCATCTGCAGCCACAT--------------------------------------------------------------------------------------------------------------------CAGCTGTTCA---GGTTCAAAATCCCGTGGAA-----------------GGATCCCCAG--------CA---------------------GA-GCTGA----A-GAAAGCGAACCCTAGTCAAATACTTTCAGCCAGCAGT-AA-------------------------------------------------------------------------TCAG---CATCA-------GATTCA-------------------G	Size	Hit Count	Total Norm	Total
No Reads

droEle1

A--C---CCAGTACAACAGCACATTTATGTTAAAAATACTCGACTAATTTCATGTCTCGCGACGC------------CACAACAACAACTACAACAACA---AA--------------------------------------------CAGCAGCAG---CATCA--------------------------------------TCAT---------CAGCAG-------------------------------CTA---------------------CA-----------------------GC----TACAG---CAGCAACAGCTACAGCTACAGCTACAACAA---CAGC--------------------------------------AGCAGCAGCACCGACAACAGCAGATCA---ACCCGAAAAACCTGAGGAAGAAGG------A---AA--------------------------------------------------------------------------------------------------------------------------------------------------AGG-------------AG---CTCATCCACATCCAGAACTG------AC---GGAAACAAACTCCAA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

T--AAACCCAGTACAACAGCACATTTATGTTTAAAATAATCGACTAATTTCATGTCTTGCCACGC------------CACAACAACAACAAC---AACA---AA--------------------------------------------CAGCATCAT---CAGCA-----------------------------------------------------GCGG----------------------------CAGCAACAA------------------CA-----------------------GC----TACAGCATCAGCAGCAGCAACAGCTACAGCTACAGCAA---CAGC--------------------------------------TACAG------CAACAACATCTGCTCA---GCCCCAAAAACCTGAGGAAATA---GAAGAA---GA--------------------------------------------------------------------------------------------------------------------------------------------------AGG-------------AG---C---ACCACATCCAGAACTG------AC---GAA-----------A	Size	Hit Count	Total Norm	Total
No Reads

droBia1

C--GAACCCTGAACAACAGCACATTTATGTT-AAAATACTCGACTAATTTCATGTTTCGCCACGC------------CACAACAA---C------AACA---AA--------------------------------------------CAGCAACTA---CAG-----------------------------------------CAG---------CACCAA----------------------------------------------------CAGCAGAAGCT---GGAA--------------------------------------------------------------------------------------------------------------------CAGCTGATCAGCAGCCCCAAAAGCGCCAGGAAGAAGGAGA--------------------------------------------------------------------------------------------GCCAGCAGA---------------------------------------------------------------AGCAGG-A--------GCCCCATCC-------------TCGCAGAGCAAAGCCCCTAA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ATTAAACCCAGTACAACAGCACATTTATGTA-AAAATACTCGACTAATTTCATGTCTCGCCACGC------------CACAACAA---C------AACAAATAA--------------------------------------------CAGCAGCAT---CA-----------------------------------------TCAG---------CAGCAG----------------------------CAGCAATAAAAGCAACAACAGCA---GCAGCAGCT---GGAA--------------------------------------------------------------------------------------------------------------------CAGCTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A	Size	Hit Count	Total Norm	Total
No Reads

droEug1

T--AAACCCAATACAACAGCACATTTATGTA-AAAATACTCGACTAATTTCATGTTTCGCCACGC------------CACAACAACAACAAC---AACA---AA--------------------------------------------CAGCAGTAT---CATCA-----------------------------------------------------GCAG----------------------------CAGCAATAACAACATCAGCAGCAACATCAGTTGAA---GGAA--------------------------------------------------------------------------------------------------------------------CAGCTGATCA---GCCCCAAAAAGCTCAGCAAAAA---GAAGGA---GA--------------------------------------------------------------------------------------------------------------------------------------------------AGG-------------A--------GCACAATTG-------------AC---GAAAA---------C	Size	Hit Count	Total Norm	Total
No Reads

dm3

C--------AGTAAAACA-AACATTTATGTT-CGAATACTCCACTAATTTCATGTCTTGCCACGC------------TACGAAAA---C------AACA---AA--------------------------------------------CAGCAGCAG---A---------------------------------------------------------------------------------------------------------------------------A---GGAA--------------------------------------------------------------------------------------------------------------------CAGCTGATCA---GCCCCAAAAATCACAGAGAGAAGGCGAAGTGAAA--GGAGCATCAT--------CA---------------------GAAGCCCAACGAACAAAAGCAAACCCAAACCAGATACTTTCAGCCAGCAAC----------------A-----------------------------------------------------------GCAGC---------------------------------------T	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGAAA--GGAGCATCAT--------CA---------------------GAA.........................................................................................................................................................................	24	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..............AACA-AACATTTATGTT-CGAATACTCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAT--------CA---------------------GAAGCCCAACGAA...............................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAA--GGAGCATCAT--------CA---------------------GA..........................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAT--------CA---------------------GAAGCCCAACGAACAAAAGCA.......................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................AG---A---------------------------------------------------------------------------------------------------------------------------A---GGAA--------------------------------------------------------------------------------------------------------------------CAGCTGATCA---GCCCCAAAA................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--GGAGCATCAT--------CA---------------------GAAGCCCAAC..................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

C--TT----G---CAACT------------------------------------------------------------GCAGCAC---------------------------------------------------------------CAGCAG-----------CAGCAGCAGCAGCAT---------------------CGACAACA------------ACAACAGCCAAGCGGCGGCAAGTCAGCAGCAGCAA------------------CAAGAACACCAG---CA------------------------------ATCACAAAAACAACAGCAA------------ACGCTGCAGTCGCAGCAGCAGCA----------------------------------------------GTCGCA---------------------------------------------------------------------------------------------------------------------GCAG-CAGCAGCAG------CAGC--------------------------------------------TGCAGTAG---CAGCAGCAGCAGCA-------GCAGCA---------A---------C	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.......................................................................................................................................................................................................................................................................................................................................................................AGTCGCAGCAGCAGCA----------------------------------------------GTCGCT---------------------------------------------------------------------------------------------------------------------..............................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCA-------GCA.......................	16	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

T--C----------------------------------------------------GCGCCACAC-------CCAAATTCAGCAA---------------------------------------------------------------CAGCAGCAG-----------CAGCAACAGCAG---------------------CAACAGCAGCAACAGCAGCAG-------------------------------CAA------------------CA------GCAG------CAG---------------------CAGCAGCTGCAACAGCAACAGCAAC---AGCAACAGCAGCAG-------------------------------------GCTGCAGCGTCGA---------T---GCCC-GAATATCA----------------------------------------------------------------------------------------------------------GAGGGCAGC----------------AGC--------------------------------------------TCGAGCGG---CTGTGGCGGCAGTA-------TCGGC------GGGTAAAGGCAATGT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C----------------AGC--------------------------------------------TCGAGCGG---CTGTGGCGGC.....................................	22	1	1.00	1	0	0	0	1
.................................................................................................................................................................................................................................................................................................................................................................................................................................................A----------------------------------------------------------------------------------------------------------GAGGGCAGC----------------AGC--------------------------------------------TCGAGC....................................................	19	1	1.00	1	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................AGCAGCAG-------------------------------------GCTGCAGCGTCGA---------T---GCCC-GA..................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0
.........................................................................................................................................................................................................CAACAGCAGCAACAGCAGCAG-------------------------------CAA------------------............................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.15	3	0	0	3	0
...........................................................................................................................................................................................................................CAG-------------------------------CAA------------------CA------GCAG------CAG---------------------CAGCAGCT..........................................................................................................................................................................................................................................................................................................................................................	23	8	0.13	1	0	0	1	0
.................................................................................................................................................................................................................GCAACAGCAGCAG-------------------------------CAA------------------CA------....................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.10	2	0	0	2	0
...............................................................................................................................................................................AGCAG---------------------CAACAGCAGCAACAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	2	0
...............................................................................................................................................................................................................CAGCAACAGCAGCAG-------------------------------CAA------------------............................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.10	2	0	0	2	0
...............................................................................CAGCAA---------------------------------------------------------------CAGCAGCAG-----------CAGCAACAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	18	0.06	1	0	0	1	0
...............................................................................................................................................................................AGCAG---------------------CAACAGCAGCAACAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0
...........................................................................................................................................................AG-----------CAGCAACAGCAG---------------------CAACAGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................AACAGCAACAGCAAC---AGCAACA...............................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................AACAGCAACAGCAAC---AGC...................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	1	0	0	0
..........................................................................................................................................................CAG-----------CAGCAACAGCAG---------------------CAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0
........................................................................................................................................................AGCAG-----------CAGCAACAGCAG---------------------CA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0

droYak3

C--CC----AGTAAAGCAGCACATTTATGTT-CAAATACTCCACTAATTTCATGTCTTGCCACGC------------TACAACAA---C------AACAATACA--------------------------------------------CAGCAGCAG---CAGGA-----------------------------------------------------GCA-------------------------------------------------------------GAA---GGAA--------------------------------------------------------------------------------------------------------------------CAGCTGATCA---GCCCCAAAAATCGCAGAGAGAAGGAGAAGCGAAA--GGAGCATTAT--------CA---------------------GA-------------------------------------------------------------------------------------------------------------------------------------AGC---------------------------------C	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.................................................................................................................................................................AGGA-----------------------------------------------------GCA-------------------------------------------------------------GAA---GGAA--------------------------------------------------------------------------------------------------------------------CAGCTGATC.............................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.................................................................................................................................................................AGGA-----------------------------------------------------GCA-------------------------------------------------------------GAA---GGAA--------------------------------------------------------------------------------------------------------------------CAGCTGATCA---.........................................................................................................................................................................................................................................................	24	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCGCAGAGAGAAGGAGA..............................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGAGAGAAGGAGAAGCGAAA--G....................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGAAA--GGAGCATTAT--------CA---------------------GA-------------------------------------------------------------------------------------------------------------------------------------AGC---------------------------------C	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAGAGAAGGAGAAGCGAAA--GG...................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCCAAAAATCGCAGAGAGAAGGAG...............................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGGAGAAGCGAAA--GGAG.................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGAAGGAGAAGCGAAA--GGAGC................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGAAGGAGAAGCGAAA--GGAGCA...............................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................AGCAG---CAGGA-----------------------------------------------------GCA-------------------------------------------------------------GAA---GGAA--------------------------------------------------------------------------------------------------------------------CAGCT.................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATCGCAGAGAGAAGGAG...............................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAA--GGAGCATTAT--------CA---------------------GA-------------------------------------------------------------------------------------------------------------------------------------AGC---------------------------------.	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGGAGAAGCGAAA--GGAGC................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATCGCAGAGAGAAGGAGA..............................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................AGGA-----------------------------------------------------GCA-------------------------------------------------------------GAA---GGAA--------------------------------------------------------------------------------------------------------------------CAGCTGATCA---GCC......................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGAGAGAAGGAGAAGC...........................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCGCAGAGAGAAGGAGAA.............................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................CA---GCCCCAAAAATCGCAGAGAGAAGGA................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

C--------AGTAAAACAGCACATTTATGTT-CAAATACTCCACTAATTTCATGTCTTGCCTCGC------------TACAACAA---C------AACA---AA--------------------------------------------CAGCAGCCTCATCAGCA-----------------------------------------------------ACA-------------------------------------------------------------GAA---GGAA--------------------------------------------------------------------------------------------------------------------CAGCTGGTCA---GCCCCAAAAATCGCAGAGAGAAGGAGAAGCGAAA--GGAGCATCCT--------TA---------------------GA-------------------------------------------------------------------------------------------------------------------------------------AGC---------------------------------C	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.............................................................TCGC------------TACAACAA---C------AACA---AA--------------------------------------------CAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	5.00	5	3	0	0	0	0	2	0
...............................................................................................................................................................TCAGCA-----------------------------------------------------ACA-------------------------------------------------------------GAA---GGAA--------------------------------------------------------------------------------------------------------------------CAGCTGGT..............................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
............................................................................................................................................................................................................................................................................................A---GGAA--------------------------------------------------------------------------------------------------------------------CAGCTGGTCA---GCCC.....................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGCGAAA--GGAGCATCCT--------TA---------------------G...........................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
...................................................................................................................................................................................................................................................................................................A--------------------------------------------------------------------------------------------------------------------CAGCTGGTCA---GCCCCAAA.................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
................................................................................................................................................................CAGCA-----------------------------------------------------ACA-------------------------------------------------------------GAA---GGAA--------------------------------------------------------------------------------------------------------------------CAGCT.................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGGAGAAGCGAAA--GG...................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
............................................................CTCGC------------TACAACAA---C------AACA---AA--------------------------------------------CAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGAGAAGCGAAA--GG...................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTCA---GCCCCAAAAATCGCAGA........................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0

dpe_776

scaffold_14:2068110-2068260 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-18.4	-18.1	-18.0