dpe_771

Name	Class	Family	Strand
Helitron-1_DVir	RC	Helitron	-

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## CGTGACTGTAGCGACTCGACTATTGATGCTGATCAAGAATATATAACTTTATGAGGCCTGTAACACTTCCTTCTGCGTGTTACACACAACTACCTTCAGCACAAATATAATATACTCCCAAGCTCTTTGAGTATCGGGTATAAAAATAAAGTCCCAGTTCCGAGATCGATGCATTAATCCAATGTCCAACGTCATCTGCAGAGTCCTTCAGTCGCTGCAATTGTCATTTCCCGAGAATGGTCTGCAGAATT ************************************************.(((((..((((((((..........)))))))).........)))))............(((((((....((((...))))...)))))))....................((((.((((((((.....))))).....)))))))....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V042 embryo	M021 embryo	V057 head
...............................................................................TTACGCACAACTACCATCAGG.......................................................................................................................................................	21	3	6	0.17	1	1	0	0
...........CGACTCGACTATTGATGCTGATC.........................................................................................................................................................................................................................	23	0	20	0.10	2	0	2	0
...................................................................................................................TCCCAAGCTCCTTGAGTCAC....................................................................................................................	20	3	10	0.10	1	0	0	1

GCACTGACATCGCTGAGCTGATAACTACGACTAGTTCTTATATATTGAAATACTCCGGACATTGTGAAGGAAGACGCACAATGTGTGTTGATGGAAGTCGTGTTTATATTATATGAGGGTTCGAGAAACTCATAGCCCATATTTTTATTTCAGGGTCAAGGCTCTAGCTACGTAATTAGGTTACAGGTTGCAGTAGACGTCTCAGGAAGTCAGCGACGTTAACAGTAAAGGGCTCTTACCAGACGTCTTAA ************************************************.(((((..((((((((..........)))))))).........)))))............(((((((....((((...))))...)))))))....................((((.((((((((.....))))).....)))))))....************************************************	Read size	Hit Count	Total Norm	Total	M042 female body
.............TGAGCTGATAACTACGACTAGTT.......................................................................................................................................................................................................................	23	20	0.30	6	6
.............TGAGCTGATAACTACGACTAGTTC......................................................................................................................................................................................................................	24	20	0.15	3	3
..............GAGCTGATAACTACGACTAGT........................................................................................................................................................................................................................	21	20	0.05	1	1

Species	Coordinate	ID	Alignment
droPer2	scaffold_14:1961671-1961921 +	dpe_771	CGTGACTGTAGCGACTCGACTATTGATGCTGATCAAGAATATATA----ACTTTATGAGGCCTGTAACACTTCCTTCTGCGTGTTACACACAACTACCTTCAGCACAAATATAATAT-ACTCCCA-AGCTC------TTTGAGTATCGGGTATAAAAATAAAG-----TC-------------CCAGTTC---------------------------------------------------------------------------------------------------------------------------CGAGATCGATGCATTAA-----------------------------------------------------------TCCAATGT-------CCAACGTCATCTGCAGAGTCCTT---CAGTCGC--------------------------TGC----------AATTGTCATT-----------------TCCCGAGAATGGT----------------------------------------CTGCAGAATT
dp5	XL_group1e:12485495-12485745 +	dps_2813	CATGACTGTAGCGACTCGACTATTGATTCTGATCAAGAATATATA----ACTTTATGAGGCCTGTAACACTTCCCTCAGCGTGTTACACACATCTACCCTCAGCACAAATCTAATAT-ACTCCCA-AGCTC------TTTGAGTATCGGGTATAAAAATAAAG-----CC-------------CCAGTTC---------------------------------------------------------------------------------------------------------------------------CGAGATCGATAAATTAA-----------------------------------------------------------TCCAATGT-------CCAATGTCATCTGCAGAGTCCTT---CAGTCGC--------------------------TGC----------AATTGTCATT-----------------TCCCGAGAATGGT----------------------------------------CTGCAGAATT
droWil2	scf2_1100000004888:511394-511626 -		CATGGCGATTTGAACTCGTCTCGTCGTGCTGATCAAGAATATATAT---ACTTTATATGGTCGGAGATGCTTCCTTCTATGCGTTGCACACTTTTG-------ACCAAAATTAATAT-ACCCTTT-TT----------GC-----AAGGGTATAAAAAATGAAT---------------------ATGTC-----GG-AAATTCTGGTTTT-----------------------------------------------------------------------CACCAGATTTCCTAATTTCATCATATTAG--TA-------------------------------------------------------------------------------------------------------ATATTGCAT---CAGCCGC--------------------------T------------AATTGCGATC-----------------T-----GATTGGC----------------------------------------CCTTTGCATT
droVir3	scaffold_12100:144066-144328 -		AATGGCAAGATCGACTCGGCTTTTGATGCTGATCAAGAATATATAT---ACTTTATGGGGTCGGAGATGCTTCCTTCTGCCTGTTACATACATTTGGATTTCGCACAAATACAATAT-ACCCTTA-AACCCATTTTTAATAGGTTCAGGGTATAACAACTTA-TTT------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAAAAGACCA----------------AATCACA---GATTCGATA--------------TTACGAT-------------------------CGTCAAT---------------------GCGC-------------GAAAGCACCAAAA---------------------------------A----------TTCTGTATATGTATAAGTGTTATAAGCTCACACGCATAAAAAGT
droMoj3	scaffold_6452:35079-35311 +		CAGGGCTATATCGACTCAGCTCATCGCGCTGATCAAGAATATATAT---ACTTTGTGGGGTCTACCACGCCTCCTTCTGCCCGTTACATACTTTTT-------CACAAAACCATTAT-ACCCTGATTTCCCATTTTCAATGGGTTCAGGGTATAAAAATGAAA-----TG-----C-------CTGGCTC--------------------T--------------------------------------AACCCAAGCCA-------------------------G----------------------------------------------------------------------------------------------------CTGGT-------------------TCGTCGGCAGAA-----------------------------------------------------------------------TATCGACGCCTT------------GTCATTTT-----ATGTAGCAAT-------------T--CAGAAGAATT
droGri2	scaffold_14830:957668-957867 +		CATGTCTATATCGATTCGGCTGTTGATCCTGATCAAGAATATATAT---ACTTAATGTGGTCGGAGATGTTTCCTTCTGCCTGTTACATACATTTC-------TAAAAAAACATTAT-ACCCTTT-TACCCATTTTTAATGTGTTCAGGGTATAACATACA--------------------------------------------------------------TAAATT-----------------------CATATAAA-------------------------T--A--------------------TTTACGAAATCGTTGA-TTAT-----------------------------------------------------------GCCTATGT-------C----GT-------------------------------------------------------------------------------------------------------------------------------------------------------CATC
droAna3	scaffold_13137:508616-508852 -		CATGCTTATATCGACTCAGGAGGTGATCCTGATCAAGAATATATAT---ACTTTATAGGGTCGGAGATGCCTCCTTCACTGCGTTGCACACTTTTG-------ACCAAAATTATAAT-ACCCCT--------------GC-----AAGGGTATAAAAATTGA-TGTG-TC-CATACATCGCACTCTAT------------------------------------------------------------------------------------------------------------------------------GCAACCGCAG---------------------------------------------------------------------AAGA-------ACCATGCTGACTTGAGATCACCT---CAAATGA--------------------------TGG----------TCTATTCGTT-----------------T--AACAGAA---TGTTCTTT---------------------------------TTTAAACTT
droBip1	scf7180000395939:13587-13826 -		CATGCTCATATCAACTCAGGAGGTGATTCTGATCAAGAATATATAT---ACTTTATAGGGTCGGAGATGTCTCCTTCACTGCGTTGCACACTTTTG-------ACCAAAATTATAAT-ACCCTCT-------------GC-----AAGGGTATAAAAATGGCA-----G-------------------TC-----AAAAAATTGTGGTTTTTGTTTATAAACATAAATTTATCTACAATATCGGGATTTTCCGCAAGCAATTCCTGCGGTCAGAAATTATTTTCCCAGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------------TTGCTAAA--
droKik1	scf7180000302610:909954-910199 +		CATGGCTAGATCGACTCGGCTGTTGATGCTGATCAAGAATATATAT---ACTTTATAGGGTCGGAAACGTCTCCTTCACTGCGTTGCAAACTTCTG-------ACTGAAATTATAAT-ACCCT---------------GC-----AAGGGTATAAATATTTA-TTTATA-----------------------------------------------------------------------------------------------------------------------------------------------------------TTTATTATAAATTAAAATCTGTGCCTATTCCAATCAGAGAGC---GGATC------GT-----------GCTT-------CCTTCGTTCCTTTCA---TCCTT---CGTTCGT--------------------------TAG----------CATT------------------------GCCGAGGAAGGA----------------------------------------TTGAAGGATT
droFic1	scf7180000453830:84222-84440 +		TT--------TCGGTTCCGATCGTAATGCTGATCAAGAATATATAT---ACTTTATGGGGTCTTAGGTGTCTCCTTCACTGCGTTGCAAACTTATG-------CCTGAAATTATAAT-ACACT-T-TGCTC------TGCAA-----GTGTATAAAAATCAT-------C-------------ACAGCTT---------------------------------------------------------------------------------------------------------------------------TG--------------------------------------------------------ATGTTGTTT------A--GCCTTTTG-------T-----TTGTTTAAAGCGTTTTT-------------------AAGAGC-----------AGA----------A----------------AACTACCGTTTTCTGATAATTTG----------------------------------------GTCCAGAATT
droEle1	scf7180000491047:1048549-1048779 +		CATGGCTAGATCGACTCTACTAGTGATGCTGATCAAGAATATATAT---ACTTTATAGGGTCGGAAACGTCTCCTTCACTGCGTTGCAAACTTCTG-------ACTGAAATTATAAT-ACCCTCT-------------GC-----AAGGGTATAAAAATGTT-T----T----------------------GATTTT-AAATCCCGTTTTG-----------------------------------------------------------------------CAAA-------------------------------------------------------------------------------------------------------ATGTTTCT-------CCAACTGCATTTCTATATGTACG---AATGCGC--------------------------TGG----------AATTGAC-TT-----------------GCTGGAGAGCAGT----------------------------------------ATGCAGTATA
droRho1	scf7180000779317:5222-5452 -		CATGGCTAGATCGACACGGCTAGTGATCCTGAACAAGAATATATAT---ACTTTATAGGGTCGGAAACGCTTCCTTCTACCTGTTACTTACTTTTG-------CACGAATACAATAT-ACCCTTT-TACTC------TACGAGTAACGGGTATAAAAAGATGG-----GCCGCAGCATACGACATGAT------------GCTC-------------------------------------------------------------------------------------------------------------TG--------------------------------------------------------GTGTTGAAT------G--GT-----T-------CTAGGAACACCTTCAGGATTCTTTAACAATCGA--------------------------TGG----------AAATAT-------------------------------------------------------------------------------TAATT
droBia1	scf7180000301624:41714-41962 -		CGTGTCTAGATCGACATAGCTTGTGATCCTGAT-AAAAACATATAT---ACTTTATGGGGTCGGAAACGCTTCTTTCTGTATGTTACATACTTTCC-------AACGATTATAGTAT-ACCCTTT-TACCC------TACGAGTGACGGGTATAATTATAACA-----C--------------CTTACTT----------------------------------GGATT-----------------------CCAAAACA-------------------------T-------------------------------ATTGTTGAGCGAA-----------------------------------------------------------ATTTAT-T-------TTAACGATGCCTTCAGAGACATT----AACAAC--------------------------AGT----------AATTTTTATG-----------------TCTTGCGGAT--T----------------------------------------TTGCGGTTTA
droTak1	scf7180000415704:449661-449886 +		CATGGCTAGATCGACTCGGCTAGTGATCCTGATCAAGAATATATAT---ACTTTATGGGGTCGGAAACGCTTCCTTCTCCCTGTTACATACTTTTG-------CACGAATACAATAT-ACCCTTT-TACTC------TACGAGTAACGGGTATAAATATGTA-T----T-----------------------------------------------------------------------------------------------------------------------------------------------------------ATTATCACTAGACTA--------------------------GAC--------------ACA------CAATGTTCAGCAGCG------------AGCGTCTTT------------------------------------------------------GTGTGAGCAAAATA---------------------TGTCATTTC-----A----------------------T--CAGCGGAATT
droEug1	scf7180000405725:4225-4427 -		CATGGCTCAAGCGACTTCGCTATTGATCCTGATCAAGAATATATAT---ACTGTATAGGGTCTGAAACTCTTAATTCTATGTGTTATATACTT--C-------AACGAATCTAGTAGTA------------------AGCGAGTGGCGGGTATAAAAATGGT-T----G-----------------------------------------------------------------------------------------------------------------------------------------------------------AATTGGTCCATTTCG--------------------------GAC--------------GCTACTGAAGAGT--------------------------------------------------------------------TG-----------CCTATGAGTGTACTCCTGA---------------------TGCCATTTC--------------------------------TCCA-GAAT
dm3	chrX:22003757-22003926 -		---GGCCAAATCGACTCGGCTATTGATCCTGATCAAGAATATATAT---ACTCTATATGGTCGCAAACGCTTCCTTCTGCGTGTTACATACTTTAC-------AACGAATCTTGTAT-ACACCTT-CACTC------TACGAGTAACAGTTATAATAACAAGA-----G----------------------------------------------------------------------------------------------------------------------------------------------------AG----------------------------------------------C--------------ACGCGACAGTCCAATTT-------CC----------------------------------------------------------------------------------------------------------------------------------------------------------A-GAGT
droSim2	node_11571:13558-13719 +		------------GACTCGAATAGGGATCCTGATCAAGAAGACATATACCACTTTATAAGGTCGGAAACGCTTCCTTCTTCGTGTTACACACTTTTC-------ATCGAATCTTGTAT-TCCCTTT-TACTC------TACGAGTAACGGGTATAAAAAAAAGG-----G-----------------------------------------------------------------------------------------------------------------------------------------------------------A-------------G--------------------------A--------------ATGCTATAGTCGAGTCT-------CC-------------------------------------------------------------------------------------------------------------------------------------------------------------GAC
droSec2	scaffold_11:2801144-2801357 -		-------------ACTCGGCTATTGATCCTGATCAAGAATATATAT---ACCTTATATGTTCGGAAACGGTTCCTTC---CTGTTACATACTTTTT----TAAAAGTAATCTATTAA-ACCCTGT-TACTC------TACGAGTTACGGGTATAAAAAACG--------C-------------ACAGTTTTGATT---------------------------------------AAACTATA--------------------------------------------------------------------------------CGGATTAA-----------------------------------------------------------ACCAGTTT-------TT-----TATTTCAAGATTTATT-------CT---------GAAGCGCAACTAAAACGTTGT----------AAT------------------------------------------------------------------------------------GGT
droYak3	v2_chr2L_random_028:1646964-1647192 -		CATGGCCAGATCGACTCGGCTACTGATCCTGATCAAGAATATATAT---ACTTTATATGGTCGGAAACGCTTCCTTCTGCCTGTTACATACTTTTC-------AACGAATCTAGTAT-ACCCTTT-TACTC------TACGAGTAACGGGTATAATTATTAGG-----TCATCAACGT----------------------------------------AAACATAACATATCC--------------------------------------------------------------------------------TA--------------------------------------------------------TCA----------------------------------------ATGCTGAGCATTT---TACTTGTGGCATTTTTCAG-------------------------------------------------------CCCAAAGAAAGT----------------------------------------CTATAAAACT
droEre2	scaffold_4845:3230918-3231130 +		--TGACCAGTTCAACACGGCTGTTGATCCTGATCAAGAATATATAT---ACTTAATATGGTCGGAAACGCTTCCTTCTGCCTGTTACATTGAATTT-------AAAGAATCTAGTAT-ACCCTTT-TACTC------TACGAGT-AAGGGTATAAAAATAGA-T----A-----------------------------------------------------------------------------------------------------------------------------------------------------------ACAATTACAAATACA--------------------------AAA--------------GCGACATTCAAAT------CGGCAAACGTTGTCGGACTGGTTC---------------------------------------------------------------------------------TGCAAG----------TTC--------------------------------TG---CAGT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droPer2

CGTGACTGTAGCGACTCGACTATTGATGCTGATCAAGAATATATA----ACTTTATGAGGCCTGTAACACTTCCTTCTGCGTGTTACACACAACTACCTTCAGCACAAATATAATAT-ACTCCCA-AGCTC------TTTGAGTATCGGGTATAAAAATAAAG-----TC-------------CCAGTTC---------------------------------------------------------------------------------------------------------------------------CGAGATCGATGCATTAA-----------------------------------------------------------TCCAATGT-------CCAACGTCATCTGCAGAGTCCTT---CAGTCGC--------------------------TGC----------AATTGTCATT-----------------TCCCGAGAATGGT----------------------------------------CTGCAGAATT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...........CGACTCGACTATTGATGCTGATC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	2	0	0	0	0	0

dp5

CATGACTGTAGCGACTCGACTATTGATTCTGATCAAGAATATATA----ACTTTATGAGGCCTGTAACACTTCCCTCAGCGTGTTACACACATCTACCCTCAGCACAAATCTAATAT-ACTCCCA-AGCTC------TTTGAGTATCGGGTATAAAAATAAAG-----CC-------------CCAGTTC---------------------------------------------------------------------------------------------------------------------------CGAGATCGATAAATTAA-----------------------------------------------------------TCCAATGT-------CCAATGTCATCTGCAGAGTCCTT---CAGTCGC--------------------------TGC----------AATTGTCATT-----------------TCCCGAGAATGGT----------------------------------------CTGCAGAATT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..........................................................................................................................................TTGAGTATCGGGTATAAAAATAA.....................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	1.10	22	0	21	1	0	0	0	0	0	0	0
...........................................TA----ACTTTATGAGGCCTGTAACACTTCCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................TTGAGTATCGGGTATAAAAATAAA....................................................................................................................................................................................................................................................................................................................................................................................................................	24	18	0.17	3	0	3	0	0	0	0	0	0	0	0
...........................................................................................................................................TGAGTATCGGGTATAAAAATAAA....................................................................................................................................................................................................................................................................................................................................................................................................................	23	18	0.11	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................TGAGTATCGGGTATAAAAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................C------TTTGAGTATCGGGTATAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................................TTTGAGTATCGGGTATAAAAATAA.....................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	1	0	0
...........................................................................................................................................TGAGTATCGGGTATAAAAATAA.....................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droWil2

CATGGCGATTTGAACTCGTCTCGTCGTGCTGATCAAGAATATATAT---ACTTTATATGGTCGGAGATGCTTCCTTCTATGCGTTGCACACTTTTG-------ACCAAAATTAATAT-ACCCTTT-TT----------GC-----AAGGGTATAAAAAATGAAT---------------------ATGTC-----GG-AAATTCTGGTTTT-----------------------------------------------------------------------CACCAGATTTCCTAATTTCATCATATTAG--TA-------------------------------------------------------------------------------------------------------ATATTGCAT---CAGCCGC--------------------------T------------AATTGCGATC-----------------T-----GATTGGC----------------------------------------CCTTTGCATT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.......................................................TATGGTCGGAGATGCTTCCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1
.........................................TATAT---ACTTTATATGGTCGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
.........................................................TGGTCGGAGATGCTTCCTTCTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
.............................................................................TATGCGTTGCACACTTTTG-------ACCAAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0
...................................................................TGCTTCCTTCTATGCGTTGCACACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0

droVir3

AATGGCAAGATCGACTCGGCTTTTGATGCTGATCAAGAATATATAT---ACTTTATGGGGTCGGAGATGCTTCCTTCTGCCTGTTACATACATTTGGATTTCGCACAAATACAATAT-ACCCTTA-AACCCATTTTTAATAGGTTCAGGGTATAACAACTTA-TTT------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAAAAGACCA----------------AATCACA---GATTCGATA--------------TTACGAT-------------------------CGTCAAT---------------------GCGC-------------GAAAGCACCAAAA---------------------------------A----------TTCTGTATATGTATAAGTGTTATAAGCTCACACGCATAAAAAGT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATATGTATAAGTGTTATAAGCTCA..............	27	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	4	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATGTATAAGTGTTATAAGCTCA..............	25	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	4	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................TACATTTGGATTTCGCACAAATACAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	5.70	114	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	114	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATGTATAAGTGTTATAAGCTCACA............	27	1	5.00	5	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................TCACA---GATTCGATA--------------TTACGAT-------------------------CGTCA.............................................................................................................................................	26	1	3.00	3	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................TTCGATA--------------TTACGAT-------------------------CGTCAAT---------------------GC....................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATGTATAAGTGTTATAAGCTCACAC...........	28	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................ACA---GATTCGATA--------------TTACGAT-------------------------CGTCAAT---------------------G.....................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................TCACA---GATTCGATA--------------TTACGAT-------------------------CGTCAA............................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATATGTATAAGTGTTATAAGC.................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................ACA---GATTCGATA--------------TTACGAT-------------------------CGTCA.............................................................................................................................................	24	1	2.00	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................ACA---GATTCGATA--------------TTACGAT-------------------------CGTC..............................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................ATCACA---GATTCGATA--------------TTACGAT-------------------------CGTCAA............................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................TA--------------TTACGAT-------------------------CGTCAAT---------------------GCGC-------------GA...................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................CACA---GATTCGATA--------------TTACGAT-------------------------CGTCAT............................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................ACA---GATTCGATA--------------TTACGAT-------------------------CGTCAAT---------------------GC....................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATATGTATAAGTGTTATAAG..................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATGTATAAGTGTTATAAGCTCTAT............	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................ACA---GATTCGATA--------------TTACGAT-------------------------CGTCAA............................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAGTGTTATAAGCTCACACGCA........	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................GATA--------------TTACGAT-------------------------CGTCAAT---------------------GCGC-------------GAA..................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATGTATAAGTGTTATAAGCTCAC.............	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................TCACA---GATTCGATA--------------TTACGAT-------------------------CGTCAC............................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATGTATAAGTGTTATAAGCTC...............	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................TCACA---GATTCGATA--------------TTACGAT-------------------------CGTC..............................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................AATCACA---GATTCGATA--------------TTACGAT-------------------------CGTCA.............................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATATGTATAAGTGTTATAAGCTC...............	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATATGTATAAGTGTTATAAGCTCAC.............	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................TTCGATA--------------TTACGAT-------------------------CGTCAAT---------------------GCGC-------------GAAAG................................................................................................	30	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................................................................................CACA---GATTCGATA--------------TTACGAT-------------------------CGTCAA............................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGTGTTATAAGCTCACACGCATAAAA...	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................A--------------TTACGAT-------------------------CGTCAAT---------------------GCGC-------------GA...................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................CCA----------------AATCACA---GATTCGATA--------------TTACGAT-------------------------CG................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................CACA---GATTCGATA--------------TTACGAT-------------------------CGTC..............................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................AAAAGACCA----------------AATCACA---GATTCGATA--------------TG................................................................................................................................................................................	27	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................TT------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAAAAGACCA----------------AATCACA---GAT......................................................................................................................................................................................................	23	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................T------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAAAAGACCA----------------AATCACA---GATTCGAT.................................................................................................................................................................................................	27	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................AAGACCA----------------AATCACA---GATTCGA..................................................................................................................................................................................................	21	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................TTAATAGGTTCAGGGTATAACAACT......................................................................................................................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TTTAATAGGTTCAGGGTATAACAACT......................................................................................................................................................................................................................................................................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................T------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAAAAGACCA----------------AATCACA---GATTTA...................................................................................................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................TACATTTGGATTTCGCACAAATACAATA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.50	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................CAAGAATATATAT---ACTTTATGGGGTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.40	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..TGGCAAGATCGACTCGGCTTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	3	0.33	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................CCATTTTTAATAGGTTCAGGGTATAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................	27	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................TACATTTGGATTTCGCACAAATACAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................TACATTTGGATTTCGCACAAATACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.25	5	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGTATATGTATAAGTGT........................	20	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----------TTCTGTATATGTATAAGTGTTA......................	23	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................TTTGGATTTCGCACAAATACAATA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.20	4	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................TACATTTGGATTTCGCACAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................TTGATGCTGATCAAGAATAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................CCATTTTTAATAGGTTCAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......AGATCGACTCGGCTTTTGATGCTGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................CATACATTTGGATTTCGCACAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................TGTTACATACATTTGGATTTCGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................ATGCTGATCAAGAATATAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
..........................................................................................................AAATACAATAT-ACCCTTA-AAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................TATATAT---ACTTTATGGGGTCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................TCGGAGATGCTTCCTTCTGCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................CCATTTTTAATAGGTTCAGGGTATCC...........................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........TCGACTCGGCTTTTGATGCTGATC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CAGGGCTATATCGACTCAGCTCATCGCGCTGATCAAGAATATATAT---ACTTTGTGGGGTCTACCACGCCTCCTTCTGCCCGTTACATACTTTTT-------CACAAAACCATTAT-ACCCTGATTTCCCATTTTCAATGGGTTCAGGGTATAAAAATGAAA-----TG-----C-------CTGGCTC--------------------T--------------------------------------AACCCAAGCCA-------------------------G----------------------------------------------------------------------------------------------------CTGGT-------------------TCGTCGGCAGAA-----------------------------------------------------------------------TATCGACGCCTT------------GTCATTTT-----ATGTAGCAAT-------------T--CAGAAGAATT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...................................................TTTGTGGGGTCTACCACGCCTCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.20	4	1	0	0	0	3	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................TCGGCAGAA-----------------------------------------------------------------------TATCGACGCCTT------------GTCAT............................................	26	6	0.17	1	1	0	0	0	0	0
...................................................TTTGTGGGGTCTACCACGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.15	3	0	0	0	0	3	0
..................................................................................................................................................................................................................T--------------------------------------AACCCAAGCCA-------------------------G----------------------------------------------------------------------------------------------------CTGGT-------------------TCGTCGG.....................................................................................................................................................	25	7	0.14	1	1	0	0	0	0	0
............................................................................................................................................................................................TC--------------------T--------------------------------------AACCCAAGCCA-------------------------G----------------------------------------------------------------------------------------------------CTGGT-------------------TCGTC.......................................................................................................................................................	25	7	0.14	1	1	0	0	0	0	0
...................................................TTTGTGGGGTCTACCACGCCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	2	0
...................................................TTTGTGGGGTCTACCACGCCTCCTTCTGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	17	0.06	1	1	0	0	0	0	0
...................................................TTTGTGGGGTCTACCACGCCTCCTTCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	17	0.06	1	1	0	0	0	0	0
............................................AT---ACTTTGTGGGGTCTACCACGCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	1	0
.......................................................TGGGGTCTACCACGCCTCCTTCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
.............................................................................TGCCCGTTACATACTTTTT-------CACAAAACC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	1	0
..................................................CTTTGTGGGGTCTACCACGCCTCCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0
.........ATCGACTCAGCTCATCGCGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
..........................................................................................................................TGATTTCCCATTTTCAATGG........................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0
......................................................................CTCCTTCTGCCCGTTACATAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
.......................................................................................................................................TCAATGGGTTCAGGGTATAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
...................................................TTTGTGGGGTCTACCACGCCTCCTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
...................................AGAATATATAT---ACTTTGTGGGGTCTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0

droGri2

CATGTCTATATCGATTCGGCTGTTGATCCTGATCAAGAATATATAT---ACTTAATGTGGTCGGAGATGTTTCCTTCTGCCTGTTACATACATTTC-------TAAAAAAACATTAT-ACCCTTT-TACCCATTTTTAATGTGTTCAGGGTATAACATACA--------------------------------------------------------------TAAATT-----------------------CATATAAA-------------------------T--A--------------------TTTACGAAATCGTTGA-TTAT-----------------------------------------------------------GCCTATGT-------C----GT-------------------------------------------------------------------------------------------------------------------------------------------------------CATC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
............................CTGATCAAGAATATATAT---ACT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	2	0
.......................................................................TCCTTCTGCCTGTTACATACATTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0

droAna3

CATGCTTATATCGACTCAGGAGGTGATCCTGATCAAGAATATATAT---ACTTTATAGGGTCGGAGATGCCTCCTTCACTGCGTTGCACACTTTTG-------ACCAAAATTATAAT-ACCCCT--------------GC-----AAGGGTATAAAAATTGA-TGTG-TC-CATACATCGCACTCTAT------------------------------------------------------------------------------------------------------------------------------GCAACCGCAG---------------------------------------------------------------------AAGA-------ACCATGCTGACTTGAGATCACCT---CAAATGA--------------------------TGG----------TCTATTCGTT-----------------T--AACAGAA---TGTTCTTT---------------------------------TTTAAACTT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.........................................TATAT---ACTTTATAGGGTCGGAGATGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.55	11	0	11	0	0	0	0
..........................................ATAT---ACTTTATAGGGTCGGAGATGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.35	7	0	7	0	0	0	0
........................................................................................CACTTTTG-------ACCAAAATTATAAT-ACCCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	19	0.11	2	0	2	0	0	0	0
...............................................................GAGATGCCTCCTTCACTGCGTTGCAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	0	0	0	0	2
...GCTTATATCGACTCAGGAGGTGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	2	0	0	0	0
.............................................................................................TTG-------ACCAAAATTATAAT-ACCCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	2	0	0	0	0
................................................................................GCGTTGCACACTTTTG-------ACCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	2
.......................................................................................ACACTTTTG-------ACCAAAATTATAAT-ACCCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	19	0.05	1	0	1	0	0	0	0
CATGCTTATATCGACTCAGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1
.....................................................................CCTCCTTCACTGCGTTGCACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
.....................................................TATAGGGTCGGAGATGCCTCCTTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0
......................................................ATAGGGTCGGAGATGCCTCCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
....CTTATATCGACTCAGGAGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0

droBip1

CATGCTCATATCAACTCAGGAGGTGATTCTGATCAAGAATATATAT---ACTTTATAGGGTCGGAGATGTCTCCTTCACTGCGTTGCACACTTTTG-------ACCAAAATTATAAT-ACCCTCT-------------GC-----AAGGGTATAAAAATGGCA-----G-------------------TC-----AAAAAATTGTGGTTTTTGTTTATAAACATAAATTTATCTACAATATCGGGATTTTCCGCAAGCAATTCCTGCGGTCAGAAATTATTTTCCCAGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------------TTGCTAAA--	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CATGGCTAGATCGACTCGGCTGTTGATGCTGATCAAGAATATATAT---ACTTTATAGGGTCGGAAACGTCTCCTTCACTGCGTTGCAAACTTCTG-------ACTGAAATTATAAT-ACCCT---------------GC-----AAGGGTATAAATATTTA-TTTATA-----------------------------------------------------------------------------------------------------------------------------------------------------------TTTATTATAAATTAAAATCTGTGCCTATTCCAATCAGAGAGC---GGATC------GT-----------GCTT-------CCTTCGTTCCTTTCA---TCCTT---CGTTCGT--------------------------TAG----------CATT------------------------GCCGAGGAAGGA----------------------------------------TTGAAGGATT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TT--------TCGGTTCCGATCGTAATGCTGATCAAGAATATATAT---ACTTTATGGGGTCTTAGGTGTCTCCTTCACTGCGTTGCAAACTTATG-------CCTGAAATTATAAT-ACACT-T-TGCTC------TGCAA-----GTGTATAAAAATCAT-------C-------------ACAGCTT---------------------------------------------------------------------------------------------------------------------------TG--------------------------------------------------------ATGTTGTTT------A--GCCTTTTG-------T-----TTGTTTAAAGCGTTTTT-------------------AAGAGC-----------AGA----------A----------------AACTACCGTTTTCTGATAATTTG----------------------------------------GTCCAGAATT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CATGGCTAGATCGACTCTACTAGTGATGCTGATCAAGAATATATAT---ACTTTATAGGGTCGGAAACGTCTCCTTCACTGCGTTGCAAACTTCTG-------ACTGAAATTATAAT-ACCCTCT-------------GC-----AAGGGTATAAAAATGTT-T----T----------------------GATTTT-AAATCCCGTTTTG-----------------------------------------------------------------------CAAA-------------------------------------------------------------------------------------------------------ATGTTTCT-------CCAACTGCATTTCTATATGTACG---AATGCGC--------------------------TGG----------AATTGAC-TT-----------------GCTGGAGAGCAGT----------------------------------------ATGCAGTATA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CATGGCTAGATCGACACGGCTAGTGATCCTGAACAAGAATATATAT---ACTTTATAGGGTCGGAAACGCTTCCTTCTACCTGTTACTTACTTTTG-------CACGAATACAATAT-ACCCTTT-TACTC------TACGAGTAACGGGTATAAAAAGATGG-----GCCGCAGCATACGACATGAT------------GCTC-------------------------------------------------------------------------------------------------------------TG--------------------------------------------------------GTGTTGAAT------G--GT-----T-------CTAGGAACACCTTCAGGATTCTTTAACAATCGA--------------------------TGG----------AAATAT-------------------------------------------------------------------------------TAATT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CGTGTCTAGATCGACATAGCTTGTGATCCTGAT-AAAAACATATAT---ACTTTATGGGGTCGGAAACGCTTCTTTCTGTATGTTACATACTTTCC-------AACGATTATAGTAT-ACCCTTT-TACCC------TACGAGTGACGGGTATAATTATAACA-----C--------------CTTACTT----------------------------------GGATT-----------------------CCAAAACA-------------------------T-------------------------------ATTGTTGAGCGAA-----------------------------------------------------------ATTTAT-T-------TTAACGATGCCTTCAGAGACATT----AACAAC--------------------------AGT----------AATTTTTATG-----------------TCTTGCGGAT--T----------------------------------------TTGCGGTTTA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CATGGCTAGATCGACTCGGCTAGTGATCCTGATCAAGAATATATAT---ACTTTATGGGGTCGGAAACGCTTCCTTCTCCCTGTTACATACTTTTG-------CACGAATACAATAT-ACCCTTT-TACTC------TACGAGTAACGGGTATAAATATGTA-T----T-----------------------------------------------------------------------------------------------------------------------------------------------------------ATTATCACTAGACTA--------------------------GAC--------------ACA------CAATGTTCAGCAGCG------------AGCGTCTTT------------------------------------------------------GTGTGAGCAAAATA---------------------TGTCATTTC-----A----------------------T--CAGCGGAATT	Size	Hit Count	Total Norm	Total
No Reads

droEug1

CATGGCTCAAGCGACTTCGCTATTGATCCTGATCAAGAATATATAT---ACTGTATAGGGTCTGAAACTCTTAATTCTATGTGTTATATACTT--C-------AACGAATCTAGTAGTA------------------AGCGAGTGGCGGGTATAAAAATGGT-T----G-----------------------------------------------------------------------------------------------------------------------------------------------------------AATTGGTCCATTTCG--------------------------GAC--------------GCTACTGAAGAGT--------------------------------------------------------------------TG-----------CCTATGAGTGTACTCCTGA---------------------TGCCATTTC--------------------------------TCCA-GAAT	Size	Hit Count	Total Norm	Total
No Reads

dm3

---GGCCAAATCGACTCGGCTATTGATCCTGATCAAGAATATATAT---ACTCTATATGGTCGCAAACGCTTCCTTCTGCGTGTTACATACTTTAC-------AACGAATCTTGTAT-ACACCTT-CACTC------TACGAGTAACAGTTATAATAACAAGA-----G----------------------------------------------------------------------------------------------------------------------------------------------------AG----------------------------------------------C--------------ACGCGACAGTCCAATTT-------CC----------------------------------------------------------------------------------------------------------------------------------------------------------A-GAGT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..........................TCCTGATCAAGAATATATAT---ACTCTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	5	23.80	119	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	0	0	4	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	23	0	13	0	20	8	42	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TCCTGATCAAGAATATATAT---ACTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	5	15.00	75	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	1	0	1	1	0	0	1	3	0	0	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	0	8	2	12	0	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
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.....................ATTGATCCTGATCAAGAATATATAT---.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................TATTGATCCTGATCAAGAATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................TATTGATCCTGATCAAGAATATATA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................ATTGATCCTGATCAAGAATATATAT---AC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

------------GACTCGAATAGGGATCCTGATCAAGAAGACATATACCACTTTATAAGGTCGGAAACGCTTCCTTCTTCGTGTTACACACTTTTC-------ATCGAATCTTGTAT-TCCCTTT-TACTC------TACGAGTAACGGGTATAAAAAAAAGG-----G-----------------------------------------------------------------------------------------------------------------------------------------------------------A-------------G--------------------------A--------------ATGCTATAGTCGAGTCT-------CC-------------------------------------------------------------------------------------------------------------------------------------------------------------GAC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
............................................................................CTTCGTGTTACACACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	16	2	1.50	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
.....................AGGGATCCTGATCAAGAAGACATAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................TACTC------TACGAGTAACGGGTATAAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.55	11	0	0	0	0	0	0	3	1	3	4	0	0	0	0	0	0	0
................................................................................................................................................AACGGGTATAAAAAAAAGG-----..............................................................................................................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................TTT-TACTC------TACGAGTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................	16	20	0.25	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
..........................................................................................................................TTT-TACTC------TACGAGTAACGGGTAT.............................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
.......................................................TAAGGTCGGAAACGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	15	7	0.14	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................TAAAAAAAAGG-----G-----------------------------------------------------------------------------------------------------------------------------------------------------------A-------------G--------------------------A--------------..........................................................................................................................................................................................	15	7	0.14	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................AAGG-----G-----------------------------------------------------------------------------------------------------------------------------------------------------------A-------------G--------------------------A--------------ATGCTATAGTCGAGT...........................................................................................................................................................................	23	7	0.14	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................TC------TACGAGTAACGGGTATAAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................ACTC------TACGAGTAACGGGTATAAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................TT-TACTC------TACGAGTAACGGGTATAAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..........................................................................................................................TTT-TACTC------TACGAGTAACGGGTATAAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................	29	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................TACGAGTAACGGGTATA............................................................................................................................................................................................................................................................................................................................................................................................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................GTAACGGGTATAAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................	15	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................TACGAGTAACGGGTATAAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................GTAACGGGTATAAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................	16	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................TTT-TACTC------TACGAGTAACGGGTA..............................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................TACTC------TACGAGTAACGGGTATAAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0

droSec2

-------------ACTCGGCTATTGATCCTGATCAAGAATATATAT---ACCTTATATGTTCGGAAACGGTTCCTTC---CTGTTACATACTTTTT----TAAAAGTAATCTATTAA-ACCCTGT-TACTC------TACGAGTTACGGGTATAAAAAACG--------C-------------ACAGTTTTGATT---------------------------------------AAACTATA--------------------------------------------------------------------------------CGGATTAA-----------------------------------------------------------ACCAGTTT-------TT-----TATTTCAAGATTTATT-------CT---------GAAGCGCAACTAAAACGTTGT----------AAT------------------------------------------------------------------------------------GGT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..............................................................................................TT----TAAAAGTAATCTATTAA-ACCCTGT-........................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0
.............ACTCGGCTATTGATCCTGATCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0

droYak3

CATGGCCAGATCGACTCGGCTACTGATCCTGATCAAGAATATATAT---ACTTTATATGGTCGGAAACGCTTCCTTCTGCCTGTTACATACTTTTC-------AACGAATCTAGTAT-ACCCTTT-TACTC------TACGAGTAACGGGTATAATTATTAGG-----TCATCAACGT----------------------------------------AAACATAACATATCC--------------------------------------------------------------------------------TA--------------------------------------------------------TCA----------------------------------------ATGCTGAGCATTT---TACTTGTGGCATTTTTCAG-------------------------------------------------------CCCAAAGAAAGT----------------------------------------CTATAAAACT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...............................................................................................................................................................................................................................TAACATATCC--------------------------------------------------------------------------------TA--------------------------------------------------------TCA----------------------------------------ATGCTGAGCA..............................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................AT---ACTTTATATGGTCGGAAACGCTTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.....CCAGATCGACTCGGCTACTGATCCTGAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0

droEre2

--TGACCAGTTCAACACGGCTGTTGATCCTGATCAAGAATATATAT---ACTTAATATGGTCGGAAACGCTTCCTTCTGCCTGTTACATTGAATTT-------AAAGAATCTAGTAT-ACCCTTT-TACTC------TACGAGT-AAGGGTATAAAAATAGA-T----A-----------------------------------------------------------------------------------------------------------------------------------------------------------ACAATTACAAATACA--------------------------AAA--------------GCGACATTCAAAT------CGGCAAACGTTGTCGGACTGGTTC---------------------------------------------------------------------------------TGCAAG----------TTC--------------------------------TG---CAGT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.......................................................TATGGTCGGAAACGCTTCCTTCTGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0	0
.................................................................AACGCTTCCTTCTGCCTGTTACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0	0

dpe_771

scaffold_14:1961721-1961871 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads