dpe_76

TCGCTGGCCAAGGACGAGCAGAACTACACCGAGCCCCAAGTACTATCTGGGTATGTTGCAAGAGAGAATAGTGTTGGCTCGATCCACCGGATAACATCTCTCTCTTTGACACACAGGGGATCTCATTCCGGGCACTTACTGCTCGAGGATCTTCAGTGACTGCGACAA *********************************((.((......))))((.(((((.((((((((...((((((..(((......))).)))))).))))))))))))).))...(((......)))..***********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V057 head	V050 head	M042 female body	V111 male body	V042 embryo	M021 embryo
...............................................................................................ATCTCTCTCTTTGACACACAGT...................................................	22	1	2	124.00	248	137	104	5	0	2	0
...............................................................................................ATCTCTCTCTTTGACACACAG....................................................	21	0	2	73.50	147	43	60	42	0	2	0
...............................................................................................ATCTCTCTCTTTGACACACA.....................................................	20	0	2	9.00	18	6	9	3	0	0	0
..................................................GTATGTTGCAAGAGAGAATAGTGT..............................................................................................	24	0	2	8.50	17	7	0	0	10	0	0
..................................................GTATGTTGCAAGAGAGAATAGT................................................................................................	22	0	2	7.00	14	0	2	0	12	0	0
..............................................................................................CATCTCTCTCTTTGACACACAG....................................................	22	0	2	6.50	13	5	6	2	0	0	0
..............................................................................................CATCTCTCTCTTTGACACACA.....................................................	21	0	2	4.00	8	2	5	0	0	0	1
..................................................GTATGTTGCAAGAGAGAATAGTGTT.............................................................................................	25	0	2	3.50	7	4	1	0	2	0	0
................................................................................................TCTCTCTCTTTGACACACAGT...................................................	21	1	2	2.50	5	4	1	0	0	0	0
................................................................................................TCTCTCTCTTTGACACACAG....................................................	20	0	2	2.50	5	0	0	5	0	0	0
..................................................GTATGTTGCAAGAGAGAATAG.................................................................................................	21	0	2	2.00	4	2	0	0	2	0	0
..................................................GTATGTTGCAAGAGAGAAT...................................................................................................	19	0	2	2.00	4	2	2	0	0	0	0
..................................................GTATGTTGCAAGAGAGAATAGTG...............................................................................................	23	0	2	1.50	3	1	1	0	1	0	0
...............................................................................................ATCTCTCTCTTTTACACACAG....................................................	21	1	2	1.50	3	3	0	0	0	0	0
...............................................................................................ATCTCTCTTTTTGACACACAG....................................................	21	1	2	1.50	3	0	1	2	0	0	0
..............................................................................................CATCTCTCTCTTTGACACAC......................................................	20	0	2	1.50	3	2	0	1	0	0	0
...............................................................................................ATCTCTCCCTTTGACACACAGT...................................................	22	2	2	1.00	2	1	1	0	0	0	0
...............................................................................................ATCTCTCTCTTTGACACACAGTT..................................................	23	2	2	1.00	2	2	0	0	0	0	0
..........................................................................TGGCTCGATCCACCGGATAAC.........................................................................	21	0	2	1.00	2	1	1	0	0	0	0
...............................................................................................AGCTCTCTCTTTGACACACAGT...................................................	22	2	2	1.00	2	2	0	0	0	0	0
...............................................................................................ATCTCTCTCTTTCACACACAG....................................................	21	1	2	1.00	2	0	2	0	0	0	0
...............................................................................................ATCTCTCTCTTTGCCACACAGT...................................................	22	2	2	1.00	2	2	0	0	0	0	0
...............................................................................................ATCTCTCTCTTTGACACAC......................................................	19	0	2	1.00	2	0	2	0	0	0	0
................................................................................................TCTCTCTCTTTGACACACAGTT..................................................	22	2	2	1.00	2	1	1	0	0	0	0
..............................................................................................CATCTCTCTCTTTGACACACAGT...................................................	23	1	2	1.00	2	0	1	1	0	0	0
...............................................................................................ATCTATCTCTTTGACACACAG....................................................	21	1	2	1.00	2	1	1	0	0	0	0
...............................................................................................ATCTCTCTCTTTGACACACAT....................................................	21	1	2	1.00	2	1	0	1	0	0	0
..................................................................................................TCTCTCTTTGACACACAGT...................................................	19	1	2	1.00	2	1	1	0	0	0	0
...............................................................................................ATCTCTCTCGTTGACACACAGT...................................................	22	2	2	1.00	2	2	0	0	0	0	0
..................................................GTATGTTGCAAGAGAGAATAGC................................................................................................	22	1	2	1.00	2	1	0	0	1	0	0
...............................................................................................ATCTCACTCTTTGACACACAGT...................................................	22	2	2	1.00	2	0	2	0	0	0	0
..................................................................................................TCTCTCTTTGACACACAG....................................................	18	0	2	1.00	2	1	1	0	0	0	0
...............................................................................................ATATCTCTCTTTGACACACAGT...................................................	22	2	2	0.50	1	1	0	0	0	0	0
...............................................................................................ATCTCTCTCTTTGACACCCAGT...................................................	22	2	2	0.50	1	1	0	0	0	0	0
...............................................................................................ATCTCTCTCCTTGACACACAG....................................................	21	1	2	0.50	1	0	1	0	0	0	0
...................................................TATGTTGCAAGAGAGAATAGTGTT.............................................................................................	24	0	2	0.50	1	1	0	0	0	0	0
..................................................GTATGTTGCAAGAGAGAATAA.................................................................................................	21	1	2	0.50	1	1	0	0	0	0	0
...............................................................................................CTCTCTCTCTTTGACACACAG....................................................	21	1	2	0.50	1	0	1	0	0	0	0
................................................................................................TATCTCTCTTTGACACACAGC...................................................	21	2	2	0.50	1	0	1	0	0	0	0
...............................................................................................ATATCGCTCTTTGACACACAG....................................................	21	2	2	0.50	1	1	0	0	0	0	0
.................GCAGAACTACACCGAGCC.....................................................................................................................................	18	0	2	0.50	1	0	0	0	0	0	1
..................................................GTATGTTGCAAGAGAGAATAGTGA..............................................................................................	24	1	2	0.50	1	0	1	0	0	0	0
...............................................................................................ATGTCTCTCTTTGACACACAG....................................................	21	1	2	0.50	1	0	0	0	0	1	0
...............................................................................................ATCTCCCTCTTTGACACACAGT...................................................	22	2	2	0.50	1	1	0	0	0	0	0
...............................................................................................ATCTCTCTCTTTGACACACCGT...................................................	22	2	2	0.50	1	1	0	0	0	0	0
..................................................GTATGTTGCAAGAGAGAATAGAG...............................................................................................	23	1	2	0.50	1	0	0	0	1	0	0
...............................................................................................ATCTCTCTCTTGGACACACAGT...................................................	22	2	2	0.50	1	1	0	0	0	0	0
...............................................................................................ATCTCTCGCTTTGAAACACAG....................................................	21	2	2	0.50	1	0	1	0	0	0	0
...............................................................................................ATCTCGCTCTTTGACACACAG....................................................	21	1	2	0.50	1	1	0	0	0	0	0
..................................................GTATGTTGCGAGAGTGAATAGTC...............................................................................................	23	3	2	0.50	1	0	0	0	0	1	0
..................................................GTATGGTGCAAGAGAGAATAGTGTT.............................................................................................	25	1	2	0.50	1	1	0	0	0	0	0
...............................................................................................ATCTCTCTCTTTGACACACAGA...................................................	22	1	2	0.50	1	0	1	0	0	0	0
...............................................................................................ATCTCTCTCTTTGACCCACAGT...................................................	22	2	2	0.50	1	1	0	0	0	0	0
...............................................................................................ATCCCTCTCTTTGACACACAGT...................................................	22	2	2	0.50	1	1	0	0	0	0	0
...............................................................................................ATCTCTCTCTTTGACACACAGC...................................................	22	1	2	0.50	1	0	1	0	0	0	0
...............................................................................................ATCTTTCTCTTTGACACACAGT...................................................	22	2	2	0.50	1	1	0	0	0	0	0
...............................................................................................ATCGCTCTCTTTGACACACAG....................................................	21	1	2	0.50	1	1	0	0	0	0	0
...............................................................................................AGCGCTCTCTTTGACACACAG....................................................	21	2	2	0.50	1	1	0	0	0	0	0
..............................................................................................CATCTCTCACTTTGACACACA.....................................................	21	1	2	0.50	1	1	0	0	0	0	0
...............................................................................................ATCTCTCTCTTTGACACACAGG...................................................	22	0	2	0.50	1	1	0	0	0	0	0
...............................................................................................ATCTCTCTCTTTGACACGCAGT...................................................	22	2	2	0.50	1	1	0	0	0	0	0
...............................................................................................ATCCCTCTCCTTGACACACAGT...................................................	22	3	2	0.50	1	0	1	0	0	0	0
..................................................GTATGTTGCAAGAGACAATTCTGTT.............................................................................................	25	3	2	0.50	1	1	0	0	0	0	0
...............................................................................................ATCTCTCTCTTTTACACACAGT...................................................	22	2	2	0.50	1	1	0	0	0	0	0
...............................................................................................ATCTCTCTCTTCGACACACAGT...................................................	22	2	2	0.50	1	1	0	0	0	0	0
...............................................................................................ATCTATCTCTTTGACACACAGT...................................................	22	2	2	0.50	1	1	0	0	0	0	0
..............................................................................................CATCTCTCCCTTTGACACACAG....................................................	22	1	2	0.50	1	0	0	1	0	0	0
...............................................................................................ATCTCTCTCTTTGTCACACAGT...................................................	22	2	2	0.50	1	0	1	0	0	0	0
...............................................................................................ATCTCTCTCTTTGCCACACAG....................................................	21	1	2	0.50	1	0	1	0	0	0	0
..................................................................................................TCTCTCTTTGACACACCG....................................................	18	1	2	0.50	1	1	0	0	0	0	0
....................................................ATGTTGCAAGAGAGAATAGTGT..............................................................................................	22	0	2	0.50	1	1	0	0	0	0	0
...............................................................................................ATCTCTCTCTTTGACACACAA....................................................	21	1	2	0.50	1	0	0	1	0	0	0
...............................................................................................ATCTCTCTCTGTGACACACAGT...................................................	22	2	2	0.50	1	1	0	0	0	0	0
...............................................................................................ACCTCTCTCTTTGACACACAGT...................................................	22	2	2	0.50	1	0	1	0	0	0	0
...............................................................................................TTCTCTCTCTTTGACACACAGT...................................................	22	2	2	0.50	1	1	0	0	0	0	0
...............................................................................................ATCTATCTCTTTGACACACTGT...................................................	22	3	3	0.33	1	1	0	0	0	0	0
...............................................................................................ATCTATATCTTTGACACACAGT...................................................	22	3	6	0.33	2	2	0	0	0	0	0
................................................................................................TCTCGCTCTTTGACACAC......................................................	18	1	3	0.33	1	1	0	0	0	0	0
...............................................................................................ATCTATCTCTTGGACACACAG....................................................	21	2	3	0.33	1	1	0	0	0	0	0
...............................................................................................ATATCTCTCATTGACACACAGC...................................................	22	3	3	0.33	1	1	0	0	0	0	0
...............................................................................................ATCTATCTCTTTGCCACACAGT...................................................	22	3	3	0.33	1	1	0	0	0	0	0
...............................................................................................ATCTCTCTCATTGACACACAGTT..................................................	23	3	3	0.33	1	1	0	0	0	0	0
...............................................................................................ATCTAGCGCTTTGACACACAGG...................................................	22	3	3	0.33	1	1	0	0	0	0	0
..................................................GTATGCTGCAAGTGAGAATACT................................................................................................	22	3	3	0.33	1	1	0	0	0	0	0
...............................................................................................ATCTCTCTCTCTGACACACGG....................................................	21	2	4	0.25	1	1	0	0	0	0	0
...............................................................................................ATCTCGCTCTTTGACACTCAGT...................................................	22	3	4	0.25	1	1	0	0	0	0	0
...............................................................................................ATATCCCTCTTTGACAAACAG....................................................	21	3	5	0.20	1	0	1	0	0	0	0
...............................................................................................ATGTGTCTCTTTGACACACAGT...................................................	22	3	5	0.20	1	1	0	0	0	0	0
...............................................................................................ATCTCTCTCTTTGACCAACAGT...................................................	22	3	5	0.20	1	1	0	0	0	0	0
...............................................................................................ATCTCTCTTTTTTACACACAGT...................................................	22	3	6	0.17	1	0	1	0	0	0	0
...............................................................................................ATCTCTCTCTTTGCCACACAGTC..................................................	23	3	6	0.17	1	1	0	0	0	0	0
...............................................................................................ATCTCTCTCTTTGACACACACT...................................................	22	2	6	0.17	1	1	0	0	0	0	0
...............................................................................................ATCTCTCTCTTTCACACACAGT...................................................	22	2	7	0.14	1	0	1	0	0	0	0
...............................................................................................ATCTCTCTCTTTTCCACACAGT...................................................	22	3	7	0.14	1	1	0	0	0	0	0
........CAAGGACGAGCAGATGTGCAC...........................................................................................................................................	21	3	7	0.14	1	0	0	0	1	0	0
...............................................................................................ATATCTCTCTTTCACACACAGT...................................................	22	3	13	0.08	1	1	0	0	0	0	0
...............................................................................................ATCTCTCTCTTTTACCCACAT....................................................	21	3	20	0.05	1	1	0	0	0	0	0

TCGCTGGCCAAGGACGAGCAGAACTACACCGAGCCCCAAGTACTATCTGGGTATGTTGCAAGAGAGAATAGTGTTGGCTCGATCCACCGGATAACATCTCTCTCTTTGACACACAGGGGATCTCATTCCGGGCACTTACTGCTCGAGGATCTTCAGTGACTGCGACAA
***********************************((.((......))))((.(((((.((((((((...((((((..(((......))).)))))).))))))))))))).))...(((......)))..*************************************

Read size

# Mismatch

Hit Count

Total Norm

Total

V057
head

V050
head

M042
female body

V111
male body

V042
embryo

M021
embryo

...............................................................................................ATCTCTCTCTTTGACACACAGT...................................................

124.00

248

137

104

...............................................................................................ATCTCTCTCTTTGACACACAG....................................................

73.50

147

...............................................................................................ATCTCTCTCTTTGACACACA.....................................................

9.00

..................................................GTATGTTGCAAGAGAGAATAGTGT..............................................................................................

8.50

..................................................GTATGTTGCAAGAGAGAATAGT................................................................................................

7.00

..............................................................................................CATCTCTCTCTTTGACACACAG....................................................

6.50

..............................................................................................CATCTCTCTCTTTGACACACA.....................................................

4.00

..................................................GTATGTTGCAAGAGAGAATAGTGTT.............................................................................................

3.50

................................................................................................TCTCTCTCTTTGACACACAGT...................................................

2.50

................................................................................................TCTCTCTCTTTGACACACAG....................................................

2.50

..................................................GTATGTTGCAAGAGAGAATAG.................................................................................................

2.00

..................................................GTATGTTGCAAGAGAGAAT...................................................................................................

2.00

..................................................GTATGTTGCAAGAGAGAATAGTG...............................................................................................

1.50

...............................................................................................ATCTCTCTCTTTTACACACAG....................................................

1.50

...............................................................................................ATCTCTCTTTTTGACACACAG....................................................

1.50

..............................................................................................CATCTCTCTCTTTGACACAC......................................................

1.50

...............................................................................................ATCTCTCCCTTTGACACACAGT...................................................

1.00

...............................................................................................ATCTCTCTCTTTGACACACAGTT..................................................

1.00

..........................................................................TGGCTCGATCCACCGGATAAC.........................................................................

1.00

...............................................................................................AGCTCTCTCTTTGACACACAGT...................................................

1.00

...............................................................................................ATCTCTCTCTTTCACACACAG....................................................

1.00

...............................................................................................ATCTCTCTCTTTGCCACACAGT...................................................

1.00

...............................................................................................ATCTCTCTCTTTGACACAC......................................................

1.00

................................................................................................TCTCTCTCTTTGACACACAGTT..................................................

1.00

..............................................................................................CATCTCTCTCTTTGACACACAGT...................................................

1.00

...............................................................................................ATCTATCTCTTTGACACACAG....................................................

1.00

...............................................................................................ATCTCTCTCTTTGACACACAT....................................................

1.00

..................................................................................................TCTCTCTTTGACACACAGT...................................................

1.00

...............................................................................................ATCTCTCTCGTTGACACACAGT...................................................

1.00

..................................................GTATGTTGCAAGAGAGAATAGC................................................................................................

1.00

...............................................................................................ATCTCACTCTTTGACACACAGT...................................................

1.00

..................................................................................................TCTCTCTTTGACACACAG....................................................

1.00

...............................................................................................ATATCTCTCTTTGACACACAGT...................................................

0.50

...............................................................................................ATCTCTCTCTTTGACACCCAGT...................................................

0.50

...............................................................................................ATCTCTCTCCTTGACACACAG....................................................

0.50

...................................................TATGTTGCAAGAGAGAATAGTGTT.............................................................................................

0.50

..................................................GTATGTTGCAAGAGAGAATAA.................................................................................................

0.50

...............................................................................................CTCTCTCTCTTTGACACACAG....................................................

0.50

................................................................................................TATCTCTCTTTGACACACAGC...................................................

0.50

...............................................................................................ATATCGCTCTTTGACACACAG....................................................

0.50

.................GCAGAACTACACCGAGCC.....................................................................................................................................

0.50

..................................................GTATGTTGCAAGAGAGAATAGTGA..............................................................................................

0.50

...............................................................................................ATGTCTCTCTTTGACACACAG....................................................

0.50

...............................................................................................ATCTCCCTCTTTGACACACAGT...................................................

0.50

...............................................................................................ATCTCTCTCTTTGACACACCGT...................................................

0.50

..................................................GTATGTTGCAAGAGAGAATAGAG...............................................................................................

0.50

...............................................................................................ATCTCTCTCTTGGACACACAGT...................................................

0.50

...............................................................................................ATCTCTCGCTTTGAAACACAG....................................................

0.50

...............................................................................................ATCTCGCTCTTTGACACACAG....................................................

0.50

..................................................GTATGTTGCGAGAGTGAATAGTC...............................................................................................

0.50

..................................................GTATGGTGCAAGAGAGAATAGTGTT.............................................................................................

0.50

...............................................................................................ATCTCTCTCTTTGACACACAGA...................................................

0.50

...............................................................................................ATCTCTCTCTTTGACCCACAGT...................................................

0.50

...............................................................................................ATCCCTCTCTTTGACACACAGT...................................................

0.50

...............................................................................................ATCTCTCTCTTTGACACACAGC...................................................

0.50

...............................................................................................ATCTTTCTCTTTGACACACAGT...................................................

0.50

...............................................................................................ATCGCTCTCTTTGACACACAG....................................................

0.50

...............................................................................................AGCGCTCTCTTTGACACACAG....................................................

0.50

..............................................................................................CATCTCTCACTTTGACACACA.....................................................

0.50

...............................................................................................ATCTCTCTCTTTGACACACAGG...................................................

0.50

...............................................................................................ATCTCTCTCTTTGACACGCAGT...................................................

0.50

...............................................................................................ATCCCTCTCCTTGACACACAGT...................................................

0.50

..................................................GTATGTTGCAAGAGACAATTCTGTT.............................................................................................

0.50

...............................................................................................ATCTCTCTCTTTTACACACAGT...................................................

0.50

...............................................................................................ATCTCTCTCTTCGACACACAGT...................................................

0.50

...............................................................................................ATCTATCTCTTTGACACACAGT...................................................

0.50

..............................................................................................CATCTCTCCCTTTGACACACAG....................................................

0.50

...............................................................................................ATCTCTCTCTTTGTCACACAGT...................................................

0.50

...............................................................................................ATCTCTCTCTTTGCCACACAG....................................................

0.50

..................................................................................................TCTCTCTTTGACACACCG....................................................

0.50

....................................................ATGTTGCAAGAGAGAATAGTGT..............................................................................................

0.50

...............................................................................................ATCTCTCTCTTTGACACACAA....................................................

0.50

...............................................................................................ATCTCTCTCTGTGACACACAGT...................................................

0.50

...............................................................................................ACCTCTCTCTTTGACACACAGT...................................................

0.50

...............................................................................................TTCTCTCTCTTTGACACACAGT...................................................

0.50

...............................................................................................ATCTATCTCTTTGACACACTGT...................................................

0.33

...............................................................................................ATCTATATCTTTGACACACAGT...................................................

0.33

................................................................................................TCTCGCTCTTTGACACAC......................................................

0.33

...............................................................................................ATCTATCTCTTGGACACACAG....................................................

0.33

...............................................................................................ATATCTCTCATTGACACACAGC...................................................

0.33

...............................................................................................ATCTATCTCTTTGCCACACAGT...................................................

0.33

...............................................................................................ATCTCTCTCATTGACACACAGTT..................................................

0.33

...............................................................................................ATCTAGCGCTTTGACACACAGG...................................................

0.33

..................................................GTATGCTGCAAGTGAGAATACT................................................................................................

0.33

...............................................................................................ATCTCTCTCTCTGACACACGG....................................................

0.25

...............................................................................................ATCTCGCTCTTTGACACTCAGT...................................................

0.25

...............................................................................................ATATCCCTCTTTGACAAACAG....................................................

0.20

...............................................................................................ATGTGTCTCTTTGACACACAGT...................................................

0.20

...............................................................................................ATCTCTCTCTTTGACCAACAGT...................................................

0.20

...............................................................................................ATCTCTCTTTTTTACACACAGT...................................................

0.17

...............................................................................................ATCTCTCTCTTTGCCACACAGTC..................................................

0.17

...............................................................................................ATCTCTCTCTTTGACACACACT...................................................

0.17

...............................................................................................ATCTCTCTCTTTCACACACAGT...................................................

0.14

...............................................................................................ATCTCTCTCTTTTCCACACAGT...................................................

0.14

........CAAGGACGAGCAGATGTGCAC...........................................................................................................................................

0.14

...............................................................................................ATATCTCTCTTTCACACACAGT...................................................

0.08

...............................................................................................ATCTCTCTCTTTTACCCACAT....................................................

0.05

AGCGACCGGTTCCTGCTCGTCTTGATGTGGCTCGGGGTTCATGATAGACCCATACAACGTTCTCTCTTATCACAACCGAGCTAGGTGGCCTATTGTAGAGAGAGAAACTGTGTGTCCCCTAGAGTAAGGCCCGTGAATGACGAGCTCCTAGAAGTCACTGACGCTGTT ***********************************((.((......))))((.(((((.((((((((...((((((..(((......))).)))))).))))))))))))).))...(((......)))..*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M021 embryo	M042 female body	V111 male body	V057 head
.................................GGGGTTGATGATAGCCGCA....................................................................................................................	19	3	8	3.50	28	14	8	4	2
..................................................................................................................GCCCTTAGAGTAAGGTCCGTG.................................	21	3	7	0.14	1	0	0	1	0
.....................................................................................TGGCCTATTGTAGGGACGGA...............................................................	20	3	8	0.13	1	0	0	0	1
......................................................................................................................................GAAAGACGCGCTCCTAGCA...............	19	3	19	0.05	1	0	1	0	0

AGCGACCGGTTCCTGCTCGTCTTGATGTGGCTCGGGGTTCATGATAGACCCATACAACGTTCTCTCTTATCACAACCGAGCTAGGTGGCCTATTGTAGAGAGAGAAACTGTGTGTCCCCTAGAGTAAGGCCCGTGAATGACGAGCTCCTAGAAGTCACTGACGCTGTT
*************************************((.((......))))((.(((((.((((((((...((((((..(((......))).)))))).))))))))))))).))...(((......)))..***********************************

Read size

# Mismatch

Hit Count

Total Norm

Total

M021
embryo

M042
female body

V111
male body

V057
head

.................................GGGGTTGATGATAGCCGCA....................................................................................................................

3.50

..................................................................................................................GCCCTTAGAGTAAGGTCCGTG.................................

0.14

.....................................................................................TGGCCTATTGTAGGGACGGA...............................................................

0.13

......................................................................................................................................GAAAGACGCGCTCCTAGCA...............

0.05

Species	Coordinate	ID	Alignment
droPer2	scaffold_6388:136-303 +	dpe_76	TCGCTGGCCAAGGACGAGCAGAACTACACCGAGCCCCAAGTACTATCTGGGTATGTTGCAA--GAG---AGAATAGT---GTTGGCTCGATCCACCGGATAACAT---------------CTCT------------------------CT------------CTTTGACACACAGGGGATCTCATTCCGGGCACTTACTGCTCGAGGATCTTCAGTGACTGCGACAA
dp5	XR_group6:1295243-1295409 +	dps_22	TCGCTGGCCAAGGACGAGCAGAACTACACCGAGC-CCAAGTACTATCTGGGTATGTTGCAA--GAG---AGAATAGT---GTTGGCTCGATCCACCGGATAACAT---------------CTCT------------------------CT------------CTTTGACACACAGGGGATCTCATTCCGGGCACTTACTGCTCGAGGATCTTTAGTGACTGCGACAA
droWil2	scf2_1100000004762:5597925-5598087 +		CCATTGATCAAGGATGAACTTAATTACACCGAAC-CGAAATATTATTTGGGTAAGCTC---GATTT---AGAAACTC---GTAAATTTTATGTATTC------------------TATATTCGT----------------------ATTCCT------------TTG--GTTTAGGTGATCTCATTCCTGGCACATATTGCTCACGCATATTCAGTGATTGCGACAA
droMoj3	scaffold_6654:2055093-2055254 +		CCGCTGCCCAAGGACGAGCACAACTACACAGAAC-CCAAATATTATCTGGGTAAGCGG----ATTT---TGAA--------------------------TCACAT---------------CTCTCAAGTCTCCTCGCTTATATCGAAATCTT----------CT------TTCAGGTGATCTTATACCAGGCACCTACTGCTCGCGCATCTTTAGCGACTGCGACAA
droAna3	scaffold_13337:8836600-8836777 +		TCGCTGGCGAAGGACGAGCAAAACTACACTGAGC-CCAAATACTATCTAGGTGAGTCT---CATAC---AG---CTCTCAACA------ACTCATTAAGTACAATTTGCAAGTG---------T------------------------TTGTCTGATTCTGACTCTGATTCGCAGGTGACCTTATTCCGGGGACCTACTGCTCCAGGATCTTCAGCGACTGCGACAA
droBip1	scf7180000396541:978416-978594 +		TCGCTGGCGAAGGACGAACAGAACTACACTGAGC-CCAAATACTACCTGGGTGAGTGT--TGCTTCCAGAA---CTCTTAACA------ACTCATTAAGTACCATTTGCGAGTGTCACATCTGT------------------------TT------------GTCTGATTCGCAGGTGACCTTATTCCGGGGACCTACTGCTCCAGGATCTTCAGCGACTGCGACAA
droFic1	scf7180000453819:100725-100747 -		GCT----------------------ACACAG---------------------------TTT--GTT---------------------------------------------------------------------------------------------------------------------------------------------------------TAAGGCAT
droEle1	scf7180000491193:2530222-2530298 +		TGA---------------------------------------------------------------------------------------------------CAT---------------CTGT------------------------TT------------CTCGCATTCGCAGGTGACCTTATACCCGGAACGTATTGCTCCAGGATCTTCAGCGACTGCGACAA
droRho1	scf7180000779741:121642-121679 -		GCTCCT----------------------CGG---------------------------CTT--GTA--------------------------------------------------------------------------------------------------------------------------CAGAGCATAATGTGGCTGGCT----------------AT
droBia1	scf7180000302193:5200992-5201062 +		TCACTGGCCAAGGACGAGCAGAACTACACGGAGC-CCAAATACTACCTGGGTGAGTTGGTG--GTG---TAAATAAT------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1	scf7180000415664:65957-66027 +		TCACTGGCCAAGGACGAGCAAAACTACACGGAGC-CCAAGTATTATCTGGGTGAGTTGCTG--GAA---TAAATAAT------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1	scf7180000409711:5150944-5151020 +		TAA---------------------------------------------------------------------------------------------------CAT---------------CTGT------------------------TT------------CTCGCATTCGCAGGTGACCTCATTCCCGGAACTTACTGCTCCCGGATCTTCAGCGACTGCGACAA
droYak3	3L:19692843-19692944 +		G----------------------------------------------------------------------------------------ACTAATTGAATATTATTTCTGGCTGTGACATCTGC------------------------TT------------TCCGC-TTTGCAGGTGACCTCATACCCGGAACGTATTGCTCCAGGATCTTCAGCGACTGCGACAA

Species

Coordinate

Alignment

droPer2

scaffold_6388:136-303 +

dpe_76

TCGCTGGCCAAGGACGAGCAGAACTACACCGAGCCCCAAGTACTATCTGGGTATGTTGCAA--GAG---AGAATAGT---GTTGGCTCGATCCACCGGATAACAT---------------CTCT------------------------CT------------CTTTGACACACAGGGGATCTCATTCCGGGCACTTACTGCTCGAGGATCTTCAGTGACTGCGACAA

dp5

XR_group6:1295243-1295409 +

dps_22

TCGCTGGCCAAGGACGAGCAGAACTACACCGAGC-CCAAGTACTATCTGGGTATGTTGCAA--GAG---AGAATAGT---GTTGGCTCGATCCACCGGATAACAT---------------CTCT------------------------CT------------CTTTGACACACAGGGGATCTCATTCCGGGCACTTACTGCTCGAGGATCTTTAGTGACTGCGACAA

droWil2

scf2_1100000004762:5597925-5598087 +

CCATTGATCAAGGATGAACTTAATTACACCGAAC-CGAAATATTATTTGGGTAAGCTC---GATTT---AGAAACTC---GTAAATTTTATGTATTC------------------TATATTCGT----------------------ATTCCT------------TTG--GTTTAGGTGATCTCATTCCTGGCACATATTGCTCACGCATATTCAGTGATTGCGACAA

droMoj3

scaffold_6654:2055093-2055254 +

CCGCTGCCCAAGGACGAGCACAACTACACAGAAC-CCAAATATTATCTGGGTAAGCGG----ATTT---TGAA--------------------------TCACAT---------------CTCTCAAGTCTCCTCGCTTATATCGAAATCTT----------CT------TTCAGGTGATCTTATACCAGGCACCTACTGCTCGCGCATCTTTAGCGACTGCGACAA

droAna3

scaffold_13337:8836600-8836777 +

TCGCTGGCGAAGGACGAGCAAAACTACACTGAGC-CCAAATACTATCTAGGTGAGTCT---CATAC---AG---CTCTCAACA------ACTCATTAAGTACAATTTGCAAGTG---------T------------------------TTGTCTGATTCTGACTCTGATTCGCAGGTGACCTTATTCCGGGGACCTACTGCTCCAGGATCTTCAGCGACTGCGACAA

droBip1

scf7180000396541:978416-978594 +

TCGCTGGCGAAGGACGAACAGAACTACACTGAGC-CCAAATACTACCTGGGTGAGTGT--TGCTTCCAGAA---CTCTTAACA------ACTCATTAAGTACCATTTGCGAGTGTCACATCTGT------------------------TT------------GTCTGATTCGCAGGTGACCTTATTCCGGGGACCTACTGCTCCAGGATCTTCAGCGACTGCGACAA

droFic1

scf7180000453819:100725-100747 -

GCT----------------------ACACAG---------------------------TTT--GTT---------------------------------------------------------------------------------------------------------------------------------------------------------TAAGGCAT

droEle1

scf7180000491193:2530222-2530298 +

TGA---------------------------------------------------------------------------------------------------CAT---------------CTGT------------------------TT------------CTCGCATTCGCAGGTGACCTTATACCCGGAACGTATTGCTCCAGGATCTTCAGCGACTGCGACAA

droRho1

scf7180000779741:121642-121679 -

GCTCCT----------------------CGG---------------------------CTT--GTA--------------------------------------------------------------------------------------------------------------------------CAGAGCATAATGTGGCTGGCT----------------AT

droBia1

scf7180000302193:5200992-5201062 +

TCACTGGCCAAGGACGAGCAGAACTACACGGAGC-CCAAATACTACCTGGGTGAGTTGGTG--GTG---TAAATAAT------------------------------------------------------------------------------------------------------------------------------------------------------

droTak1

scf7180000415664:65957-66027 +

TCACTGGCCAAGGACGAGCAAAACTACACGGAGC-CCAAGTATTATCTGGGTGAGTTGCTG--GAA---TAAATAAT------------------------------------------------------------------------------------------------------------------------------------------------------

droEug1

scf7180000409711:5150944-5151020 +

TAA---------------------------------------------------------------------------------------------------CAT---------------CTGT------------------------TT------------CTCGCATTCGCAGGTGACCTCATTCCCGGAACTTACTGCTCCCGGATCTTCAGCGACTGCGACAA

droYak3

3L:19692843-19692944 +

G----------------------------------------------------------------------------------------ACTAATTGAATATTATTTCTGGCTGTGACATCTGC------------------------TT------------TCCGC-TTTGCAGGTGACCTCATACCCGGAACGTATTGCTCCAGGATCTTCAGCGACTGCGACAA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droPer2

TCGCTGGCCAAGGACGAGCAGAACTACACCGAGCCCCAAGTACTATCTGGGTATGTTGCAA--GAG---AGAATAGT---GTTGGCTCGATCCACCGGATAACAT---------------CTCT------------------------CT------------CTTTGACACACAGGGGATCTCATTCCGGGCACTTACTGCTCGAGGATCTTCAGTGACTGCGACAA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.......................................................................................................AT---------------CTCT------------------------CT------------CTTTGACACACAGT...................................................	22	2	124.00	248	0	5	2	104	137	0
.......................................................................................................AT---------------CTCT------------------------CT------------CTTTGACACACAG....................................................	21	2	73.50	147	0	42	2	60	43	0
.......................................................................................................AT---------------CTCT------------------------CT------------CTTTGACACACA.....................................................	20	2	9.00	18	0	3	0	9	6	0
..................................................GTATGTTGCAA--GAG---AGAATAGT---GT.................................................................................................................................................	24	2	8.50	17	0	0	0	0	7	10
..................................................GTATGTTGCAA--GAG---AGAATAGT---...................................................................................................................................................	22	2	7.00	14	0	0	0	2	0	12
......................................................................................................CAT---------------CTCT------------------------CT------------CTTTGACACACAG....................................................	22	2	6.50	13	0	2	0	6	5	0
......................................................................................................CAT---------------CTCT------------------------CT------------CTTTGACACACA.....................................................	21	2	4.00	8	1	0	0	5	2	0
..................................................GTATGTTGCAA--GAG---AGAATAGT---GTT................................................................................................................................................	25	2	3.50	7	0	0	0	1	4	2
........................................................................................................T---------------CTCT------------------------CT------------CTTTGACACACAGT...................................................	21	2	2.50	5	0	0	0	1	4	0
........................................................................................................T---------------CTCT------------------------CT------------CTTTGACACACAG....................................................	20	2	2.50	5	0	5	0	0	0	0
..................................................GTATGTTGCAA--GAG---AGAATAG.......................................................................................................................................................	21	2	2.00	4	0	0	0	0	2	2
..................................................GTATGTTGCAA--GAG---AGAAT.........................................................................................................................................................	19	2	2.00	4	0	0	0	2	2	0
..................................................GTATGTTGCAA--GAG---AGAATAGT---G..................................................................................................................................................	23	2	1.50	3	0	0	0	1	1	1
......................................................................................................CAT---------------CTCT------------------------CT------------CTTTGACACAC......................................................	20	2	1.50	3	0	1	0	0	2	0
.......................................................................................................AT---------------CTCT------------------------CT------------CTTTGACACACAGTT..................................................	23	2	1.00	2	0	0	0	0	2	0
..................................................................................TGGCTCGATCCACCGGATAAC............................................................................................................................	21	2	1.00	2	0	0	0	1	1	0
.......................................................................................................AT---------------CTCT------------------------CT------------CTTTGACACAC......................................................	19	2	1.00	2	0	0	0	2	0	0
........................................................................................................T---------------CTCT------------------------CT------------CTTTGACACACAGTT..................................................	22	2	1.00	2	0	0	0	1	1	0
......................................................................................................CAT---------------CTCT------------------------CT------------CTTTGACACACAGT...................................................	23	2	1.00	2	0	1	0	1	0	0
.......................................................................................................AT---------------CTCT------------------------CT------------CTTTGACACACAT....................................................	21	2	1.00	2	0	1	0	0	1	0
.........................................................................................................................TCT------------------------CT------------CTTTGACACACAGT...................................................	19	2	1.00	2	0	0	0	1	1	0
..................................................GTATGTTGCAA--GAG---AGAATAGC---...................................................................................................................................................	22	2	1.00	2	0	0	0	0	1	1
.........................................................................................................................TCT------------------------CT------------CTTTGACACACAG....................................................	18	2	1.00	2	0	0	0	1	1	0
...................................................TATGTTGCAA--GAG---AGAATAGT---GTT................................................................................................................................................	24	2	0.50	1	0	0	0	0	1	0
..................................................GTATGTTGCAA--GAG---AGAATAA.......................................................................................................................................................	21	2	0.50	1	0	0	0	0	1	0
.................GCAGAACTACACCGAGCC................................................................................................................................................................................................	18	2	0.50	1	1	0	0	0	0	0
..................................................GTATGTTGCAA--GAG---AGAATAGT---GA.................................................................................................................................................	24	2	0.50	1	0	0	0	1	0	0
.......................................................................................................AT---------------CTCT------------------------CT------------CTTTGACACACAGA...................................................	22	2	0.50	1	0	0	0	1	0	0
.......................................................................................................AT---------------CTCT------------------------CT------------CTTTGACACACAGC...................................................	22	2	0.50	1	0	0	0	1	0	0
.......................................................................................................AT---------------CTCT------------------------CT------------CTTTGACACACAGG...................................................	22	2	0.50	1	0	0	0	0	1	0
....................................................ATGTTGCAA--GAG---AGAATAGT---GT.................................................................................................................................................	22	2	0.50	1	0	0	0	0	1	0
.......................................................................................................AT---------------CTCT------------------------CT------------CTTTGACACACAA....................................................	21	2	0.50	1	0	1	0	0	0	0
.......................................................................................................AT---------------CTCT------------------------CT------------CTTTGACACACACT...................................................	22	6	0.17	1	0	0	0	0	1	0

dp5

TCGCTGGCCAAGGACGAGCAGAACTACACCGAGC-CCAAGTACTATCTGGGTATGTTGCAA--GAG---AGAATAGT---GTTGGCTCGATCCACCGGATAACAT---------------CTCT------------------------CT------------CTTTGACACACAGGGGATCTCATTCCGGGCACTTACTGCTCGAGGATCTTTAGTGACTGCGACAA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.......................................................................................................AT---------------CTCT------------------------CT------------CTTTGACACACAG....................................................	21	1	369.00	369	0	211	12	58	8	70	6	0	0	4
.......................................................................................................AT---------------CTCT------------------------CT------------CTTTGACACACAGT...................................................	22	1	196.00	196	0	19	8	33	9	123	3	0	0	1
.......................................................................................................AT---------------CTCT------------------------CT------------CTTTGACACACA.....................................................	20	1	41.00	41	0	30	1	4	0	6	0	0	0	0
......................................................................................................CAT---------------CTCT------------------------CT------------CTTTGACACACAG....................................................	22	1	23.00	23	0	4	2	7	4	6	0	0	0	0
........................................................................................................T---------------CTCT------------------------CT------------CTTTGACACACAG....................................................	20	1	15.00	15	0	15	0	0	0	0	0	0	0	0
..................................................GTATGTTGCAA--GAG---AGAATAGT---GT.................................................................................................................................................	24	1	15.00	15	0	1	2	0	4	2	5	0	0	1
.......................................................................................................AT---------------CTCT------------------------CT------------CTTTGACACAC......................................................	19	1	10.00	10	0	0	0	10	0	0	0	0	0	0
........................................................................................................T---------------CTCT------------------------CT------------CTTTGACACACAGT...................................................	21	1	10.00	10	0	2	0	2	0	6	0	0	0	0
.......................................................................................................AT---------------CTCT------------------------CT------------CTTTGACACACAGC...................................................	22	1	8.00	8	0	0	2	6	0	0	0	0	0	0
..................................................GTATGTTGCAA--GAG---AGAATAGT---...................................................................................................................................................	22	1	8.00	8	0	1	1	0	0	5	1	0	0	0
.......................................................................................................AT---------------CTCT------------------------CT------------CTTTGACACACAGTT..................................................	23	1	7.00	7	0	3	0	2	0	2	0	0	0	0
......................................................................................................CAT---------------CTCT------------------------CT------------CTTTGACACACA.....................................................	21	1	7.00	7	0	0	3	1	0	3	0	0	0	0
..................................................GTATGTTGCAA--GAG---AGAATAG.......................................................................................................................................................	21	1	7.00	7	0	0	0	0	0	5	2	0	0	0
..................................................GTATGTTGCAA--GAG---AGAATAGT---GTT................................................................................................................................................	25	1	4.00	4	0	1	0	0	2	0	1	0	0	0
..................................................................................TGGCTCGATCCACCGGATAAC............................................................................................................................	21	1	4.00	4	0	0	1	2	1	0	0	0	0	0
......................................................................................................CAT---------------CTCT------------------------CT------------CTTTGACACAC......................................................	20	1	3.00	3	0	1	1	0	0	1	0	0	0	0
..................................................GTATGTTGCAA--GAG---AGAATAGT---G..................................................................................................................................................	23	1	3.00	3	0	1	0	0	0	2	0	0	0	0
.......................................................................................................AT---------------CTCT------------------------CT------------CTTTGACACACAGA...................................................	22	1	3.00	3	0	2	0	1	0	0	0	0	0	0
..................................................GTATGTTGCAA--GAG---AGAATA........................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	2	0	0	0	0
.........................................................................................................................TCT------------------------CT------------CTTTGACACACAGT...................................................	19	1	2.00	2	0	0	0	0	0	2	0	0	0	0
........................................................................................................T---------------CTCT------------------------CT------------CTTTGACACACA.....................................................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................................AT---------------CTCT------------------------CT------------CTTTGACACACAA....................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0
..................................................GTATGTTGCAA--GAG---AGAATAGT---T..................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0
...................................................TATGTTGCAA--GAG---AGAATAGT---GT.................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0	0	0	0
...................................................TATGTTGCAA--GAG---AGAATAGT---...................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.......................................................................................................AT---------------CTCT------------------------CT------------CTTTGACACACT.....................................................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.......................................................................................................AT---------------CTCT------------------------CT------------CTTTGACACA.......................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................TCT------------------------CT------------CTTTGACACACAG....................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................CTCT------------------------CT------------CTTTGACACACAG....................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................CTCT------------------------CT------------CTTTGACACACAGT...................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................GTATGTTGCAA--GAG---AGAAT.........................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0
...................................................TATGTTGCAA--GAG---AGAATAG.......................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0
......................................................................................................CAT---------------CTCT------------------------CT------------CTTTGACACACAC....................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.......................................................................................................AT---------------CTCT------------------------CT------------CTTTGACACACAC....................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0
........................................................................................................T---------------CTCT------------------------CT------------CTTTGACACACAGA...................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.......................................................................................................AT---------------CTCT------------------------CT------------CTTTGACACACAGTTT.................................................	24	2	0.50	1	0	0	1	0	0	0	0	0	0	0
.......................................................................................................AT---------------CTCT------------------------CT------------CTTTGACACACAAT...................................................	22	2	0.50	1	0	0	0	0	0	1	0	0	0	0

droWil2

CCATTGATCAAGGATGAACTTAATTACACCGAAC-CGAAATATTATTTGGGTAAGCTC---GATTT---AGAAACTC---GTAAATTTTATGTATTC------------------TATATTCGT----------------------ATTCCT------------TTG--GTTTAGGTGATCTCATTCCTGGCACATATTGCTCACGCATATTCAGTGATTGCGACAA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

droMoj3

CCGCTGCCCAAGGACGAGCACAACTACACAGAAC-CCAAATATTATCTGGGTAAGCGG----ATTT---TGAA--------------------------TCACAT---------------CTCTCAAGTCTCCTCGCTTATATCGAAATCTT----------CT------TTCAGGTGATCTTATACCAGGCACCTACTGCTCGCGCATCTTTAGCGACTGCGACAA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droAna3

TCGCTGGCGAAGGACGAGCAAAACTACACTGAGC-CCAAATACTATCTAGGTGAGTCT---CATAC---AG---CTCTCAACA------ACTCATTAAGTACAATTTGCAAGTG---------T------------------------TTGTCTGATTCTGACTCTGATTCGCAGGTGACCTTATTCCGGGGACCTACTGCTCCAGGATCTTCAGCGACTGCGACAA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

TCGCTGGCGAAGGACGAACAGAACTACACTGAGC-CCAAATACTACCTGGGTGAGTGT--TGCTTCCAGAA---CTCTTAACA------ACTCATTAAGTACCATTTGCGAGTGTCACATCTGT------------------------TT------------GTCTGATTCGCAGGTGACCTTATTCCGGGGACCTACTGCTCCAGGATCTTCAGCGACTGCGACAA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GCT----------------------ACACAG---------------------------TTT--GTT---------------------------------------------------------------------------------------------------------------------------------------------------------TAAGGCAT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TGA---------------------------------------------------------------------------------------------------CAT---------------CTGT------------------------TT------------CTCGCATTCGCAGGTGACCTTATACCCGGAACGTATTGCTCCAGGATCTTCAGCGACTGCGACAA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GCTCCT----------------------CGG---------------------------CTT--GTA--------------------------------------------------------------------------------------------------------------------------CAGAGCATAATGTGGCTGGCT----------------AT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TCACTGGCCAAGGACGAGCAGAACTACACGGAGC-CCAAATACTACCTGGGTGAGTTGGTG--GTG---TAAATAAT------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TCACTGGCCAAGGACGAGCAAAACTACACGGAGC-CCAAGTATTATCTGGGTGAGTTGCTG--GAA---TAAATAAT------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TAA---------------------------------------------------------------------------------------------------CAT---------------CTGT------------------------TT------------CTCGCATTCGCAGGTGACCTCATTCCCGGAACTTACTGCTCCCGGATCTTCAGCGACTGCGACAA	Size	Hit Count	Total Norm	Total
No Reads

droYak3

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

dpe_76

scaffold_6388:186-253 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-24.8	-24.7	-24.5