ID:

dpe_755

 Coordinate:

scaffold_13:2038353-2038503 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-2.7 -2.6 -2.5

Flybase annnotation

exon [dper_GLEANR_13300:3]; CDS [Dper\GL13122-cds]; intron [Dper\GL13122-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------#################---------------------------------
ATATACTAGCGTAAGGTCTTTATACGTTCGATACGGTTTACTATACATACTATACCTATATATCTTCTTATTTTTTTTTTTTTGCTCTTGACCTTAAGCATTTTTTGAAACTTCAATATCAGTTGGTAGGATACGATCTAAGGACTATAGTAGGACTAGTGGCCATTGTATATATTTGGGGCCTTGTTTTTTCACTTTCAGACCCGACATCGGAGTGATTTATCAAGTTTGATTTATTTAATGTGATATAT
********************************************************************************************(((((((.....((((....)))).....)))..))))................********************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M021
embryo
 M042
female body
 V042
embryo
 V057
head
...............................................................................................................................AGGATACGATCTAAGGACT......................................................................................................... 19 0 1 7.00 7 7 0 0 0
...............................................................................................................................AGGATACGATCTAAGGACTATAGTA................................................................................................... 25 0 1 6.00 6 6 0 0 0
.........................................................................................................................................CTAAGGACTATAGTAGGACT.............................................................................................. 20 0 1 6.00 6 6 0 0 0
........................................................................................................................................................................................................GACCCGACATCGGAGTGAT................................ 19 0 1 4.00 4 4 0 0 0
............................................................................................................................GGTAGGATACGATCTAAGGACT......................................................................................................... 22 0 1 4.00 4 4 0 0 0
.......................................................................................................................CAGTTGGTAGGATACGATCTAAGGACT......................................................................................................... 27 0 1 2.00 2 2 0 0 0
............................................................................................CTTAAGCATTTTTTGAAACTTC......................................................................................................................................... 22 0 1 2.00 2 2 0 0 0
...................................................................................................................ATATCAGTTGGTAGGATA...................................................................................................................... 18 0 1 2.00 2 2 0 0 0
..........................................................................................................................TTGGTAGGATACGATCTAAGGAC.......................................................................................................... 23 0 1 2.00 2 2 0 0 0
.............................................................................................................................GTAGGATACGATCTAAGGACTATAGTA................................................................................................... 27 0 1 2.00 2 2 0 0 0
..................................................................................................................................................ATAGTAGGACTAGTGGCCATT.................................................................................... 21 0 1 2.00 2 2 0 0 0
.............................................................................................................................................GGACTATAGTAGGACTAGT........................................................................................... 19 0 1 2.00 2 2 0 0 0
...............................................................................................................................AGGATACGATCTAAGGAC.......................................................................................................... 18 0 1 2.00 2 2 0 0 0
................................................................................................................................GGATACGATCTAAGGACT......................................................................................................... 18 0 1 2.00 2 2 0 0 0
..............................................................................................................................................GACTATAGTAGGACTAGT........................................................................................... 18 0 1 2.00 2 2 0 0 0
...........................................................................................................................................AAGTACTATCGTTGGACTAGTGGC........................................................................................ 24 3 1 1.00 1 0 0 1 0
....................................................................................................................................................................................................................................TTGATTTATTTAATGTGATATA. 22 0 1 1.00 1 0 1 0 0
.............................................................................................................................GTAGGATACGATCTAAGGG........................................................................................................... 19 1 1 1.00 1 1 0 0 0
.........................................................................................................................................................................ATATATTTGGGGCCTTGTTTTTTC.......................................................... 24 0 1 1.00 1 0 0 1 0
..................................................................................................................................................................................................CTTTCAGACCCGACATCGGAGT................................... 22 0 1 1.00 1 0 0 1 0
...............................................................................................................................AGGATACGATCTAAGGACTATAGTAGGA................................................................................................ 28 0 1 1.00 1 1 0 0 0
...............................................................................................................................AGGATACGATCTAAGGACTAT....................................................................................................... 21 0 1 1.00 1 1 0 0 0
.....................ATACGTTCGATACGGTTTACT................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0
...............................................................................................................................AGGATACGATCTAAGGACA......................................................................................................... 19 1 1 1.00 1 1 0 0 0
.......................................................................................................................................................................................................AGACCCGACATCGGAGTG.................................. 18 0 1 1.00 1 1 0 0 0
..............................................................................................................................................GACTATAGTAGGACTAGG........................................................................................... 18 1 1 1.00 1 1 0 0 0
..................................................................................................................................................ATAGTAGGACTAGTGGCCATTGTAT................................................................................ 25 0 1 1.00 1 0 1 0 0
.........................................................................................................................................................................ATATATTTGTGGCCTTGTTTTTTC.......................................................... 24 1 1 1.00 1 1 0 0 0
.........................................................................................GACCTTAAGCATTTTTTGAAACTTC......................................................................................................................................... 25 0 1 1.00 1 0 0 1 0
...............GTCTTTATACGTTCGATACGGTT..................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0
..........................TTCGATACGGTTTACTATACATACTA....................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0
.............................................................................................................................GTAGGATACGATCTAAGGA........................................................................................................... 19 0 1 1.00 1 1 0 0 0
....................................................................................................TTTTTTGAAACTTCAATATCAGTT............................................................................................................................... 24 0 1 1.00 1 0 1 0 0
..................................................................................................................................ATACGATCTAAGGACTAT....................................................................................................... 18 0 1 1.00 1 1 0 0 0
..............................................................................................................................................GACTATAGTAGGACTAGC........................................................................................... 18 1 1 1.00 1 1 0 0 0
...........................................................................................................................................AAGGACTATAGTAGGACTAGTGGC........................................................................................ 24 0 1 1.00 1 1 0 0 0
............................................................................................................................GGTAGGATACGATCTAAGGACC......................................................................................................... 22 1 1 1.00 1 1 0 0 0
................................................................................................................................................................................................CACTTTCAGACCCGACATCGGAG.................................... 23 0 1 1.00 1 0 1 0 0
........................................................................................................TTGAAACTTCGAAATCGGT................................................................................................................................ 19 3 20 0.05 1 0 0 0 1

Anti-sense strand reads

TATATGATCGCATTCCAGAAATATGCAAGCTATGCCAAATGATATGTATGATATGGATATATAGAAGAATAAAAAAAAAAAAACGAGAACTGGAATTCGTAAAAAACTTTGAAGTTATAGTCAACCATCCTATGCTAGATTCCTGATATCATCCTGATCACCGGTAACATATATAAACCCCGGAACAAAAAAGTGAAAGTCTGGGCTGTAGCCTCACTAAATAGTTCAAACTAAATAAATTACACTATATA
*********************************************************************************************************(((((((.....((((....)))).....)))..))))................******************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 M021
embryo
 V111
male body
.......................................................................................................................GTCAACCATCCTATGCTTG................................................................................................................. 19 1 1 1.00 1 0 1 0
..........................................................................................................................................................................................................................AAATAGTTCAAACTAAATAAA............ 21 0 1 1.00 1 1 0 0
..............................................................................................................................................................................................................TGAAGCCTCAATACATAGT.......................... 19 3 10 0.10 1 1 0 0
..................................................................................................................................................................................................GAAAGTAGGGGCTGTAACC...................................... 19 3 19 0.05 1 0 0 1
........................................................................................................................................................................................................CTCGGCTGTAGCCCCACG................................. 18 3 20 0.05 1 0 1 0
......................................................................AAAAAAAAAGAAAAGAGAACT................................................................................................................................................................ 21 2 20 0.05 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_13:2038303-2038553 + dpe_755 ATATACTAGCGTA--------------------------------AGGTCTTTATACGTTCG----------------ATACGGTTTACTATACATAC---TATACCT------ATATATCTTCTTATTTTTTTTTT-------------TTT----------------------------------------------------------------------------------------------------------------------GCTCTTGACCTTAAG--------------------------------CATT-----------------------------------------------TTTT-----------------------G-AAACTTCA-----ATATCAGTTGGT-AGGAT---ACGAT-------------------CTAAGGAC---TATAGT-----AGGAC---------------TAGTGGCCATTGTA-------TATATTTGGGG-------CCTTGTTTTTTCAC---TTT------------------C--------------------AGACCCG--------ACA------------------------------TC----------GGAGTGATTTATC----------------------------AAGTTTGATTTATTTAATGTGATATAT
dp5 XL_group1a:7395094-7395344 + ATATACTAGCGTA--------------------------------AGGTCTTTATACGTTCG----------------ATACGGTTTACTATACATAC---TATACCT------ATATATCTTCTTATTTTTTTTTT-------------TTT----------------------------------------------------------------------------------------------------------------------GCTCTTGACCTTAAG--------------------------------CATT-----------------------------------------------TTTT-----------------------G-AAACTTCA-----ATATCAGTTGGT-AGGAT---ACGAT-------------------CTAAGGAC---TATAGT-----AGGAC---------------TAGTGGCCATTGTA-------TATATTTGGGG-------CCTTGCTTTTTCAC---TTT------------------C--------------------AGACCCG--------ACA------------------------------TC----------GGAGTGATTTATC----------------------------AAATTTGATTTATTTAATGTGATATAT
droWil2 scf2_1100000004909:10523900-10524143 - AAAAAGGC----------------------GGCGCCTAAATCGCAAATTTTTGATAGTTTTATATA-------TGT------------GTATATATAG---AAAAGTT------ATATATATATATATATAATTAC----------------------------------------------------------------------------------------ATTAT------------------------------------------TGACATAACCTTAAC--------------------------------CCTTA--------------------------------------------------------------------CCCCAT-TAACTTCA-----ATATCAGTTAGT-AAGAG---CAAAA---------A--GAATAGAA-AAACA---T--AA---GCA------TGCG---GGAATACATATTATTAATTTTA-------TAAAATTAATT-------TTTTT--------TTTT--------------------------TTTATT-----------------------------------------------------------------------------------------------------------------ATTTGATTTCTTTCATGTGATATAT
droVir3 scaffold_12928:3027423-3027534 - CTAGATAA-------------------------------------AAGTCCTTATACATATACATA-------CACATATACATATACATATACATAT------ATATATATATATATATATTCTTGTATGTTTTTT-------------TTT----------------------------------------------------------------------------------------------------------------------TTATTTGATTTGGCG--------------------------------TCTC-----------------------------------------------TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T
droMoj3 scaffold_6328:304227-304357 + ACACTA--ACATA-------------------------------------TTTATATGCCTA----------------CTACGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCAAGAAGCTTTTCCCAGTTTTTTTTTTTT--------TTTTTTTTTTTTTTTTTTTGACTTATC-----TATT-----------------------------------------------TGTT-----------------------G-AGACTAAG-----A---------CT-AGAAT---ATAAG-------------------ATAAAGTC---TGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT
droGri2 scaffold_14978:318645-318813 - TTTAGT------------------------------------------------------------------------------------ATATATATATCTATATAT------ATATATCTATATATTATTTTTTT-------------TCTGTTTTGAATGTTTTAGCATTCATGCACTGCGG------------------------------------CT------------------TT----TT-----------GGC------ATGATCTGAAC--------------------------------------TAT---------------------------------------------------T-----------------------T-AAACTTGATAATAATATT----------------AATTA-------------------T-AATTATAAT--TT---GTC------TGT---------------------------------------------------------TTGTCCGT---TCT------------------G--------------------AATTTCG-----------------------------------------------------------------------------------------------------------------------AC
droAna3 scaffold_12613:84596-84923 - TCTTACTAGGATATATGTATTTTTTTCAACCTCCCCC----------------------------------------------------------------------------------CCTTCCCAA-------ATTTTTCGACTTTTTTTT----------------------------GCAATCGATTTTGATAATC--GATTAATT------------------TTTTTTT----ATCT----TTTATTTT-----T---TATTTTCGCTCTTGACCTTAAG--------------------------------CGTTTG----------------------TTTAATTTT---T-CTTTTTCTTT---TATTTTTTGCTCTAATTTCTTATT-GAACTTCA-----ATATCAGTTGGT-AGGTT---ATTTT-------------------T-TAGGA---TATTAATAGTTTAGGA-----------------------------A-------TTTTTTTCGGG-------C-TTGCTTTTATTTT--ATT------------------C--------------------AGACTAT--------ATA------------------------------TTTAAAAAACAAAAAACAACA--GC-------------------------AAAAAATTTGATTTCTTTAATGTGATATAT
droBip1 scf7180000394758:47939-48272 - TTTTACTAGGATATAT--ATTTTT----------------------------------------------------------------------------------------------TTCCTCCAAA-------ATTTGTCGACT----TTT----------------------------TCAATCGATTTTGATAATC--GATT------TTTT------------------TTTAAATCT----TCTATTTT-----TTT------TCGCTCTTGACCTTAAG--------------------------------CGTTTG----------------------TTTAAC--T---T-TTTT---TTT---TATTTTTTGCTCTAATTTCTTATT-GAACTTCA-----ATATCAGTTGGT-AGGCT---ATGTT---------------------AAGGA---T--TTATATTTTAGGA-----------------------------AT------TTTTTTTCGGG-------C-TTGCTTTTATTAT--ATTCGTATAATATACCCCCCT-----TCCC-----------------------------CCA-----------------------GACTACA----------CAAGTGATTTAACTAAAAAAAAAACAAAAAAAGCAACAAAAAAATTTGATTTCTTTAATGTGATATAT
droKik1 scf7180000302258:334140-334367 + ATTTTT----------------------------------------------------------------------------------------------------------------------TTATTTTT------------------------------------------------------------------------------------------TTATT-TCGATTTTCAG---TGCGATCCAAAGAGATTGCATCTATTTTTGACCTTGACCTTAAA--------------------------------CGTAA----------------------AAAGG-T--T---T-TTT----TTTT-------------------TTGTGTG-GAACTTCA-----ATATCAGTTA-TAGGTAGCCTATATATATATATATATAA----------------T--AT---GTTTAATA-----------------------------C-------CTTTTTTCGGG-------C-TTGCTTTTTTAAT--GT-----------------------------------------------------------------------------------------------------TGGTGATTTAAC-------------------------AACAAATTTGATTTCTTTAATGTGATATAT
droFic1 scf7180000454072:40143-40358 - ACTTACTTATGTT-----------------------------------------T---------------------------------------A---------------------------------------------------------T----------------------------GCC--------------TCAACACT------TTTT------------------TTCACACCC----TC-----------GAT------TCTCTCTTGACCGTAGG--------------------------------CCTTGCATGCATACTTA---------TACCTG-T--T---T-T------TTTT-------------------CTGTGGA-GAGCTTCA-----GTATCAGTTAGT-AGATT---ACGTT-------------------T-CGGCA---T--TC---GCC------GTCA-----------------------------------------------------TG--------ATTT--------------------------CGTACCGT----------TC--AA---GGGG--GTA-------------------------GTGTA----------CAAGTGATTTAAC----------------------------CATTTTGATTTCTTTGATGTGATATAT
droEle1 scf7180000490996:475076-475250 + ATATAT------------------------------------------------------------------------------------------------------------------------------------------------TTT----------------------------GCGA-----------------------TATTT-----------------------------------------------CTT------TCTTTCTTGACCTTAGC-------------CCTTATGACCGACCTATGACCTTACA-------------------TATATG-A--TGTTT-TTT-----TTT--C----------------TTCGGAA-GAACTTCA-----ATATCAGTTAGT-AGGTT---ATGTT-------------------T-AAAA-C---TATA--------------------------------------------------------------------------------------------------------------------------------A-----------ACA------------------------------T-----------AAAGTGATTTAAC----------------------------AAATTTGATTTCTTTGATGTGATATAT
droRho1 scf7180000779337:496473-496732 + CCTTTCC------------------------TCCCCC---------------TATA------AATATTTTTTTTTC------------ATAGATATAG---A-----T------GAACACCATCCTAT-------TT-------------TTT----------------------------GCGA------------------------------------TTT---------TT----CAAT----TC-----------AAT------ACTTTCTTGACCTTAAG--------------------------------CTAGCTACACATATATA---------GATATG-A--T---T-T------TTTT-------------------TTGTGGA-GAACTTCA-----ATATCAGTTAGT-AGGTT---ATGTT-------------------T-AAAGA---T--TT---GCT------TACT---------------------------------------------------------T------TGT--------------------------TGTACCATTCGAGAGAAGAG--------GAGAGATA-----------------------GGAGGTA----------CAAGTGATTTAAC----------------------------AAATTTGATTTCTTTAATGTGATATAT
droBia1 scf7180000302126:1899358-1899569 - GCATCC-----------------------------------------------------------------------------------------------------------------------TAT-------TT-------------TTT----------------------------GCGA------------------------------------TT------------------CT----TC-----------GCC------TCTTTCTTGACCTTAAG--------------------------------CCTAT----------------------GAATG-A--T---T-CTTT---TTTTTTGA---------------CCGTGGA-GAACTTCA-----ATATCAGTTGGT-AGGTT---ATTTT-------------------T-AACGA---T--TT---GCT------TGCT---------------------------------------------------------TC----AT--CTTAGTGTTTTTTTCCCCCCT-----CGTACCTT----------TC--GACA-GGGG---T-------------------------AGTGTA----------CAAGTGATTTAAC----------------------------AAATTTGATTTCTTTAATGTGATATAT
droTak1 scf7180000415360:254549-254795 + ATATACT-----------------------------------------------------------------------------------------------------------------------AT-------TT-------------TAT----------------------------GCGA-----------------------TTTTT-----------CAT-TTGATTTTTAGACCC----CCCATGAT-----GAT------TCTTTCTTGACCTTAAG--------------------------------CCTTATA-------------------TGCATG-A--T---TTCTTT---TTTTTTCATTTTTT-------TTCCGTGGAGAAACTTCA-----ATATCAGTTGGT-AGGTT---ATTTT-------------------T-AATGATGAT--TT---GCT------TGCTTTGC-----------------T---TT-------------------TT---------------TTTT--------------------------CGTACCAT----------TC--AAGA-GGGG--TTAGTA--------------------GTGTGTA----------CAAGTGATTTAAC----------------------------AAATTTGATTTCTTTAATGTGATATAT
droEug1 scf7180000409178:52880-53143 + TTTTGTTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCC--------------TT------GATTTTTCTTTTTGATTTACCTTTGAT--------------TT-----------GAT------TCGTTCTTGACCTTAAG--------------------------------CCTTTGATATATATATATATGTAGAAAATAGG-A--T---T-TTT-----TTT-------------------CTGTGGA-GAACTTCA-----ATATCAGCTAGT-AGGTT---ATATA------------ATATATTT-AAAGA---T--TT---GCT------TGCT---------------------------------------------------------TTTTTTTTTT--------------------------TGTACCAT----------TC--AACAGGGAG--GGAG-AAGGTGTAACTCTACCCATCTCTCTCTA----------CAAGTGATTTAAC----------------------------AAATTTTATTTGTTTAATGTGATATAT
dm3 chrX:3279400-3279661 + ATGTAT----------------------------------------------------------------------------------------ATGC---AAGATTT------GTATATCCTCCTACTTTTTTTTT-------------TTT----------------------------GCAA------------------------------------TTTACT-TTGATTT----AGCT----TC-----------GAT------CCTTTCTTGACATTAAG--------------------------------CCCTA---------------------AATATG-A--T---T-T--------TT-------------------TTCTGGA-GAACTTCA-----ATATCAGTTAGT-AGGTT---ATGTT-------------------T-AACGA---T--TT---GCT------TGCG---C-----------------T---TTTT----------CCGCTTTTT-----TT----TTTGTTTT-----------TTTACCATACCATACCATACCAT----------AC--AA---GGGG--TTA-----------------------GAGTTTA----------CGAGTGATTTAAC----------------------------AAATTTGATTTCTTCAATGTGATATAT
droSim2 x:3032989-3033218 + GTATAC------------------------------------------------------------------------------------------------------------------CCTCCTAA------TTT-------------TTG----------------------------GCGA------------------------------------TTTACT-TTGATTT----AGCT----TC-----------GAT------TCTTTCTTGACACTAAG--------------------------------CCCTA---------------------AATATG-A--G---T-T---------T-------------------TTGTGGA-GAACTTCA-----ATATCAGTTAGT-AGGTT---ATGTT-------------------T-AACGA---A--TT---GCT------TGCG---C-----------------T---TTTTTTT-------CTTCTTTTTTTCT-TT----TTTTTTTT--------------------------TTTACCAT----------AC--AA---GGGG--TTA-----------------------GAGTTTA----------CGAGTGATTTAAC----------------------------AAATTTGATTTCTTCAATGTGATATAT
droSec2 scaffold_10:2984338-2984563 + GTATAC------------------------------------------------------------------------------------------------------------------CCTCCTAA------TTT-------------TTG----------------------------GCGA------------------------------------TTTACT-TTGATTT----AGCT----TC-----------GAT------TCTTTCTACACACTAAG--------------------------------CCCTC---------------------AATATG-A--T---T-T---------T-------------------TTGTGGA-GAACTTCA-----ATATCAGTTAGT-AGGTT---ATGTT-------------------T-AACGA---A--TT---GCT------TGCG---C-----------------T---TTTTTTT-------CTTCTTTTTTTCT-TT--------TTTT--------------------------TTTACCAT----------AC--AC---GGGG--TTA-----------------------GAGTTTA----------CGAGTGATTTAAC----------------------------AAATTTGATTTCTTCAATGTGATATAT
droYak3 X:5097785-5098023 - GTATAT------------------------------------------------------------------------------------------AC---AGGATCT------GTATACCCTCCTAT-------T--------------TTT----------------------------GCGA------------------------------------TATACTTTTGATTT----AGCT----TC-----------GAT------TCTTTCTTGACATTAAG--------------------------------CCTTA---------------------AATATG-A--T---T-T------TTTT-------------------TTGTGGA-GAACTTCA-----ATATCAGTTAGT-AGGTT---ATGTT-------------------T-AACGA---T--TT---GCT------TGCA---T-----------------T---TTAT----ATA---TATATTTTT-----TT--------TTTG--------------------------TTTACCAT----------AC--AA---GGGG--TTA-----------------------TAGTGTA----------CAAGTGATTTAAC----------------------------AAATTTGATTTCTTCAATGTGATATAT
droEre2 scaffold_4690:691726-691970 + GTATAC------------------------------------------------------------------------------------------------------------------CCTCCTAT-------TT-------------TTT----------------------------GCGA------------------------------------TTTACTTTTGATTA----AGCT----TC----------GGAT------CCTTTCTTGACATTAAG--------------------------------CCTTA---------------------AATATG-C--T---T-CTTT---TTTTATTATTA-------TTATTTTGTGGA-GAGCTTCA-----ATATCAGTTAGT-AGGTT---ATGTT-------------------T-AACGA---T--TT---GCT------TGCA---T-----------------T---TTTTTTT-------TAAATTTTATTTT-TT--------ATCT--------------------------TTTACCAT----------AC--AA---GGGG--TTA-----------------------GAGTGTA----------CAAGTGATTTAAC----------------------------AAATTTGATTTCTTCAATGTGATATAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
ATATACTAGCGTA--------------------------------AGGTCTTTATACGTTCG----------------ATACGGTTTACTATACATAC---TATACCT------ATATATCTTCTTATTTTTTTTTT-------------TTT----------------------------------------------------------------------------------------------------------------------GCTCTTGACCTTAAG--------------------------------CATT-----------------------------------------------TTTT-----------------------G-AAACTTCA-----ATATCAGTTGGT-AGGAT---ACGAT-------------------CTAAGGAC---TATAGT-----AGGAC---------------TAGTGGCCATTGTA-------TATATTTGGGG-------CCTTGTTTTTTCAC---TTT------------------C--------------------AGACCCG--------ACA------------------------------TC----------GGAGTGATTTATC----------------------------AAGTTTGATTTATTTAATGTGATATATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAT---ACGAT-------------------CTAAGGAC---T................................................................................................................................................................................................................................................................1917.007700000
........................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAT---ACGAT-------------------CTAAGGAC---TATAGT-----A.....................................................................................................................................................................................................................................................2516.006600000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAGGAC---TATAGT-----AGGAC---------------T.................................................................................................................................................................................................................................2016.006600000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCCG--------ACA------------------------------TC----------GGAGTGAT............................................................1914.004400000
....................................................................................................................................................................................................................................................................................................................................................................................................................................GGT-AGGAT---ACGAT-------------------CTAAGGAC---T................................................................................................................................................................................................................................................................2214.004400000
...............................................................................................................................................................................................................................................................................................................................................................................................................................CAGTTGGT-AGGAT---ACGAT-------------------CTAAGGAC---T................................................................................................................................................................................................................................................................2712.002200000
........................................................................................................................................................................................................................................................................................CTTAAG--------------------------------CATT-----------------------------------------------TTTT-----------------------G-AAACTTC...............................................................................................................................................................................................................................................................................................................................2212.002200000
...........................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAGTTGGT-AGGAT---A...................................................................................................................................................................................................................................................................................................1812.002200000
..................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGT-AGGAT---ACGAT-------------------CTAAGGAC---.................................................................................................................................................................................................................................................................2312.002200000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GT-AGGAT---ACGAT-------------------CTAAGGAC---TATAGT-----A.....................................................................................................................................................................................................................................................2712.002200000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGT-----AGGAC---------------TAGTGGCCATT.......................................................................................................................................................................................................................2112.002200000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAC---TATAGT-----AGGAC---------------TAGT..............................................................................................................................................................................................................................1912.002200000
........................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAT---ACGAT-------------------CTAAGGAC---.................................................................................................................................................................................................................................................................1812.002200000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GGAT---ACGAT-------------------CTAAGGAC---T................................................................................................................................................................................................................................................................1812.002200000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAC---TATAGT-----AGGAC---------------TAGT..............................................................................................................................................................................................................................1812.002200000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATTTATTTAATGTGATATA.2211.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GT-AGGAT---ACGAT-------------------CTAAGGG.....................................................................................................................................................................................................................................................................1911.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------TATATTTGGGG-------CCTTGTTTTTTC...............................................................................................................................................................................2411.001001000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---TTT------------------C--------------------AGACCCG--------ACA------------------------------TC----------GGAGT...............................................................2211.001001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAT---ACGAT-------------------CTAAGGAC---TATAGT-----AGGA..................................................................................................................................................................................................................................................2811.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAT---ACGAT-------------------CTAAGGAC---TAT..............................................................................................................................................................................................................................................................2111.001100000
.....................................................ATACGTTCG----------------ATACGGTTTACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAT---ACGAT-------------------CTAAGGAC---A................................................................................................................................................................................................................................................................1911.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCCG--------ACA------------------------------TC----------GGAGTG..............................................................1811.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAC---TATAGT-----AGGAC---------------TAGG..............................................................................................................................................................................................................................1811.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGT-----AGGAC---------------TAGTGGCCATTGTA-------T............................................................................................................................................................................................................2511.001010000
.....................................................................................................................................................................................................................................................................................GACCTTAAG--------------------------------CATT-----------------------------------------------TTTT-----------------------G-AAACTTC...............................................................................................................................................................................................................................................................................................................................2511.001001000
...............................................GTCTTTATACGTTCG----------------ATACGGTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
..........................................................TTCG----------------ATACGGTTTACTATACATAC---TA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GT-AGGAT---ACGAT-------------------CTAAGGA.....................................................................................................................................................................................................................................................................1911.001100000
................................................................................................................................................................................................................................................................................................................................TT-----------------------------------------------TTTT-----------------------G-AAACTTCA-----ATATCAGTT................................................................................................................................................................................................................................................................................................................2411.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AT---ACGAT-------------------CTAAGGAC---TAT..............................................................................................................................................................................................................................................................1811.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAC---TATAGT-----AGGAC---------------TAGC..............................................................................................................................................................................................................................1811.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAC---TATAGT-----AGGAC---------------TAGTGGC...........................................................................................................................................................................................................................2411.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................GGT-AGGAT---ACGAT-------------------CTAAGGAC---C................................................................................................................................................................................................................................................................2211.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAC---TTT------------------C--------------------AGACCCG--------ACA------------------------------TC----------GGAG................................................................2311.001010000
dp5
ATATACTAGCGTA--------------------------------AGGTCTTTATACGTTCG----------------ATACGGTTTACTATACATAC---TATACCT------ATATATCTTCTTATTTTTTTTTT-------------TTT----------------------------------------------------------------------------------------------------------------------GCTCTTGACCTTAAG--------------------------------CATT-----------------------------------------------TTTT-----------------------G-AAACTTCA-----ATATCAGTTGGT-AGGAT---ACGAT-------------------CTAAGGAC---TATAGT-----AGGAC---------------TAGTGGCCATTGTA-------TATATTTGGGG-------CCTTGCTTTTTCAC---TTT------------------C--------------------AGACCCG--------ACA------------------------------TC----------GGAGTGATTTATC----------------------------AAATTTGATTTATTTAATGTGATATATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGT-AGGAT---ACGAT-------------------CTAAGGAC---TA...............................................................................................................................................................................................................................................................2513.0030000000300
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAC---TTT------------------C--------------------AGACCCG--------ACA------------------------------TC----------GGAG................................................................2412.0020200000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................GAT-------------------CTAAGGAC---TATAGT-----AGGAC---------------TAGT..............................................................................................................................................................................................................................2611.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------------------C--------------------AGACCCG--------ACA------------------------------TC----------GGAGTGAT............................................................2211.0010000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAT-------------------CTAAGGAC---TATAGT-----AG....................................................................................................................................................................................................................................................2111.0010010000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCCG--------ACA------------------------------TC----------GGAGTGATTTATC----------------------------...........................2511.0010010000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT------------------C--------------------AGACCCG--------ACA------------------------------TC----------GGAGTGATTTATC----------------------------...........................2911.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAC---TATAGT-----AGGAC---------------TAGTGGC...........................................................................................................................................................................................................................2211.0010000100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGT-----AGGAC---------------TAGTGGCCATTGTA-------TA...........................................................................................................................................................................................................2711.0010000000100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------------CTAAGGAC---TATAGT-----AGGAC---------------TAGTGGC...........................................................................................................................................................................................................................2711.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................GGT-AGGAT---ACGAT-------------------CTAAGGAC---TAT..............................................................................................................................................................................................................................................................2411.0010000001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCCATTGTA-------TATATTTGGGG-------C..........................................................................................................................................................................................2411.0010010000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGTA-------TATATTTGGGG-------CCTTGCT....................................................................................................................................................................................2511.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................T---ACGAT-------------------CTAAGGAC---TATAGT-----AGGAC---------------..................................................................................................................................................................................................................................2511.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAT---ACGAT-------------------CTAAGGAC---TATA.............................................................................................................................................................................................................................................................2211.0010000000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----AGGAC---------------TAGTGGCCATTGTA-------TATATT.......................................................................................................................................................................................................2611.0010000000100
..............................................................................................................................................................................................................................................................................................................................................................................................................................TCAGTTGGT-AGGAT---ACGAT-------------------CTAA........................................................................................................................................................................................................................................................................2311.0010100000000
...............................................GTCTTTATACGTTCG----------------ATACGGTTTACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
.................................................................................................................................................................................................................................................................................................................................T-----------------------------------------------TTTT-----------------------G-AAACTTCA-----ATATCAGTTGGT-A...........................................................................................................................................................................................................................................................................................................2711.0010000000100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAGGAC---TATAGT-----AGGAC---------------TAGTGGC...........................................................................................................................................................................................................................2611.0010000000001
......TAGCGTA--------------------------------AGGTCTTTATACGTTCG----------------ATA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGGGG-------CCTTGCTTTTTCAC---T.........................................................................................................................................................................2311.0010100000000
.................................................................................................................................................................................................................................................................................................................................T-----------------------------------------------TTTT-----------------------G-AAACTTCA-----ATATCAGTTGG..............................................................................................................................................................................................................................................................................................................2511.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGT-----AGGAC---------------TAGTGGCCATTGTA-------.............................................................................................................................................................................................................2311.0010000000100
............................................................................................................................................................................................................................................................................................................................................................................................................................................T---ACGAT-------------------CTAAGGAC---TATAGT-----AGGAC---------------TAG...............................................................................................................................................................................................................................2811.0010100000000
.....................................................ATACGTTCG----------------ATACGGTTTACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100000
...............................................................................................................................................................................................................................................................................GCTCTTGACCTTAAG--------------------------------CATT-----------------------------------------------TTTT-----------------------G-AAA...................................................................................................................................................................................................................................................................................................................................2711.0010010000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------------CTAAGGAC---TATAGT-----AGGAC---------------TAGT..............................................................................................................................................................................................................................2411.0010100000000
droWil2
AAAAAGGC----------------------GGCGCCTAAATCGCAAATTTTTGATAGTTTTATATA-------TGT------------GTATATATAG---AAAAGTT------ATATATATATATATATAATTAC----------------------------------------------------------------------------------------ATTAT------------------------------------------TGACATAACCTTAAC--------------------------------CCTTA--------------------------------------------------------------------CCCCAT-TAACTTCA-----ATATCAGTTAGT-AAGAG---CAAAA---------A--GAATAGAA-AAACA---T--AA---GCA------TGCG---GGAATACATATTATTAATTTTA-------TAAAATTAATT-------TTTTT--------TTTT--------------------------TTTATT-----------------------------------------------------------------------------------------------------------------ATTTGATTTCTTTCATGTGATATATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGAA-AAACA---T--AA---GCA------TGCG---GGA.......................................................................................................................................................................................................................................2413.00300120
.................................................TTTGATAGTTTTATATA-------TGT------------GTATAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010
.............................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGTTAGT-AAGAG---CAAAA---------......................................................................................................................................................................................................................................................................................2011.00100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACA---T--AA---GCA------TGCG---GGA.......................................................................................................................................................................................................................................1811.00101000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGAA-AAACA---T--AA---GCA------TGCG---GGA.......................................................................................................................................................................................................................................2511.00100010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATTTCTTTCATGTGAT....1911.00100010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---T--AA---GCA------TGCG---GGAATACATATTATT...........................................................................................................................................................................................................................2711.00100100
............................................................................................................................................................................................................................................................................................................................................................................................................................TATCAGTTAGT-AAGAG---CAAAA---------A--GAA................................................................................................................................................................................................................................................................................2511.00100001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-AAACA---T--AA---GCA------TGCG---GGA.......................................................................................................................................................................................................................................1911.00100010
.....................................................ATAGTTTTATATA-------TGT------------GTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA---T--AA---GCA------TGCG---GGAATACATATT..............................................................................................................................................................................................................................2611.00100010
....................................................................................................................................TTAC----------------------------------------------------------------------------------------ATTAT------------------------------------------TGACATAACCTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
.............................................AATTTTTGATAGTTTTATATA-------TGT------------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACA---T--AA---GCA------TGCG---GGAA......................................................................................................................................................................................................................................1911.00100010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGAA-AAACA---T--AA---GCA------TGC..............................................................................................................................................................................................................................................2111.00100010
..............................................ATTTTTGATAGTTTTATATA-------TGT------------GT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010
..................................................................................................................................AATTAC----------------------------------------------------------------------------------------ATTAT------------------------------------------TGACATAACCTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
..................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGT-AAGAG---CAAAA---------A--GA.................................................................................................................................................................................................................................................................................1811.00100010
.................................................TTTGATAGTTTTATATA-------TGT------------GT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGAA-AAACA---T--AA---GCA------TGCG---G.........................................................................................................................................................................................................................................2211.00100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACA---T--AA---GCA------TGCG---GGAATAC...................................................................................................................................................................................................................................2211.00100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACA---T--AA---GCA------TGCG---GGAATACATATT..............................................................................................................................................................................................................................2711.00100010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCG---GGAATACATATTATT...........................................................................................................................................................................................................................1911.00100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA---GCA------TGCG---GGAATACAT.................................................................................................................................................................................................................................1811.00100010
droVir3
CTAGATAA-------------------------------------AAGTCCTTATACATATACATA-------CACATATACATATACATATACATAT------ATATATATATATATATATTCTTGTATGTTTTTT-------------TTT----------------------------------------------------------------------------------------------------------------------TTATTTGATTTGGCG--------------------------------TCTC-----------------------------------------------TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........................................................TATACATA-------CACATATACATATACAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25100.101000000000000000001000000000000000000000000000000000000000000000
.....................................................................................TACATATACATAT------ATATAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000010000000000000000000000000000000000000000000000
droMoj3
ACACTA--ACATA-------------------------------------TTTATATGCCTA----------------CTACGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCAAGAAGCTTTTCCCAGTTTTTTTTTTTT--------TTTTTTTTTTTTTTTTTTTGACTTATC-----TATT-----------------------------------------------TGTT-----------------------G-AGACTAAG-----A---------CT-AGAAT---ATAAG-------------------ATAAAGTC---TGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TTTAGT------------------------------------------------------------------------------------ATATATATATCTATATAT------ATATATCTATATATTATTTTTTT-------------TCTGTTTTGAATGTTTTAGCATTCATGCACTGCGG------------------------------------CT------------------TT----TT-----------GGC------ATGATCTGAAC--------------------------------------TAT---------------------------------------------------T-----------------------T-AAACTTGATAATAATATT----------------AATTA-------------------T-AATTATAAT--TT---GTC------TGT---------------------------------------------------------TTGTCCGT---TCT------------------G--------------------AATTTCG-----------------------------------------------------------------------------------------------------------------------ACSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
TCTTACTAGGATATATGTATTTTTTTCAACCTCCCCC----------------------------------------------------------------------------------CCTTCCCAA-------ATTTTTCGACTTTTTTTT----------------------------GCAATCGATTTTGATAATC--GATTAATT------------------TTTTTTT----ATCT----TTTATTTT-----T---TATTTTCGCTCTTGACCTTAAG--------------------------------CGTTTG----------------------TTTAATTTT---T-CTTTTTCTTT---TATTTTTTGCTCTAATTTCTTATT-GAACTTCA-----ATATCAGTTGGT-AGGTT---ATTTT-------------------T-TAGGA---TATTAATAGTTTAGGA-----------------------------A-------TTTTTTTCGGG-------C-TTGCTTTTATTTT--ATT------------------C--------------------AGACTAT--------ATA------------------------------TTTAAAAAACAAAAAACAACA--GC-------------------------AAAAAATTTGATTTCTTTAATGTGATATATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................................................................................................................................................................................................................................................................................................................G----------------------TTTAATTTT---T-CTTTTTCT....................................................................................................................................................................................................................................................................................................................................................................1911.001001000
..................................................................................................................................................................................................................................................................................................................................................................................................................TTCA-----ATATCAGTTGGT-AGGT........................................................................................................................................................................................................................................................................................................2011.001001000
.................................................................................................................................................................................................................................................................................................................................................................................................................CTTCA-----ATATCAGTTGGT-AGG.........................................................................................................................................................................................................................................................................................................2011.001100000
............................................................................................................................................................................................................................................................................TTCGCTCTTGACCTTAAG--------------------------------C.....................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
................................................................................................................................................................................................................................................................................................................................................................................TT---TATTTTTTGCTCTAATTTCT...........................................................................................................................................................................................................................................................................................................................................2211.001010000
.....................................................................................................................................................................................................................................TTTTTT----ATCT----TTTATTTT-----T---TATTTTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
...........................................................................................................................................................................................................................................................................TTTCGCTCTTGACCTTAAG--------------------------------C.....................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------------------------TTTAAAAAACAAAAAACAACA--GC-------------------------..............................2411.001010000
droBip1
TTTTACTAGGATATAT--ATTTTT----------------------------------------------------------------------------------------------TTCCTCCAAA-------ATTTGTCGACT----TTT----------------------------TCAATCGATTTTGATAATC--GATT------TTTT------------------TTTAAATCT----TCTATTTT-----TTT------TCGCTCTTGACCTTAAG--------------------------------CGTTTG----------------------TTTAAC--T---T-TTTT---TTT---TATTTTTTGCTCTAATTTCTTATT-GAACTTCA-----ATATCAGTTGGT-AGGCT---ATGTT---------------------AAGGA---T--TTATATTTTAGGA-----------------------------AT------TTTTTTTCGGG-------C-TTGCTTTTATTAT--ATTCGTATAATATACCCCCCT-----TCCC-----------------------------CCA-----------------------GACTACA----------CAAGTGATTTAACTAAAAAAAAAACAAAAAAAGCAACAAAAAAATTTGATTTCTTTAATGTGATATATSizeHit CountTotal NormTotal
No Reads
droKik1
ATTTTT----------------------------------------------------------------------------------------------------------------------TTATTTTT------------------------------------------------------------------------------------------TTATT-TCGATTTTCAG---TGCGATCCAAAGAGATTGCATCTATTTTTGACCTTGACCTTAAA--------------------------------CGTAA----------------------AAAGG-T--T---T-TTT----TTTT-------------------TTGTGTG-GAACTTCA-----ATATCAGTTA-TAGGTAGCCTATATATATATATATATAA----------------T--AT---GTTTAATA-----------------------------C-------CTTTTTTCGGG-------C-TTGCTTTTTTAAT--GT-----------------------------------------------------------------------------------------------------TGGTGATTTAAC-------------------------AACAAATTTGATTTCTTTAATGTGATATATSizeHit CountTotal NormTotal
No Reads
droFic1
ACTTACTTATGTT-----------------------------------------T---------------------------------------A---------------------------------------------------------T----------------------------GCC--------------TCAACACT------TTTT------------------TTCACACCC----TC-----------GAT------TCTCTCTTGACCGTAGG--------------------------------CCTTGCATGCATACTTA---------TACCTG-T--T---T-T------TTTT-------------------CTGTGGA-GAGCTTCA-----GTATCAGTTAGT-AGATT---ACGTT-------------------T-CGGCA---T--TC---GCC------GTCA-----------------------------------------------------TG--------ATTT--------------------------CGTACCGT----------TC--AA---GGGG--GTA-------------------------GTGTA----------CAAGTGATTTAAC----------------------------CATTTTGATTTCTTTGATGTGATATATSizeHit CountTotal NormTotal
No Reads
droEle1
ATATAT------------------------------------------------------------------------------------------------------------------------------------------------TTT----------------------------GCGA-----------------------TATTT-----------------------------------------------CTT------TCTTTCTTGACCTTAGC-------------CCTTATGACCGACCTATGACCTTACA-------------------TATATG-A--TGTTT-TTT-----TTT--C----------------TTCGGAA-GAACTTCA-----ATATCAGTTAGT-AGGTT---ATGTT-------------------T-AAAA-C---TATA--------------------------------------------------------------------------------------------------------------------------------A-----------ACA------------------------------T-----------AAAGTGATTTAAC----------------------------AAATTTGATTTCTTTGATGTGATATATSizeHit CountTotal NormTotal
No Reads
droRho1
CCTTTCC------------------------TCCCCC---------------TATA------AATATTTTTTTTTC------------ATAGATATAG---A-----T------GAACACCATCCTAT-------TT-------------TTT----------------------------GCGA------------------------------------TTT---------TT----CAAT----TC-----------AAT------ACTTTCTTGACCTTAAG--------------------------------CTAGCTACACATATATA---------GATATG-A--T---T-T------TTTT-------------------TTGTGGA-GAACTTCA-----ATATCAGTTAGT-AGGTT---ATGTT-------------------T-AAAGA---T--TT---GCT------TACT---------------------------------------------------------T------TGT--------------------------TGTACCATTCGAGAGAAGAG--------GAGAGATA-----------------------GGAGGTA----------CAAGTGATTTAAC----------------------------AAATTTGATTTCTTTAATGTGATATATSizeHit CountTotal NormTotal
No Reads
droBia1
GCATCC-----------------------------------------------------------------------------------------------------------------------TAT-------TT-------------TTT----------------------------GCGA------------------------------------TT------------------CT----TC-----------GCC------TCTTTCTTGACCTTAAG--------------------------------CCTAT----------------------GAATG-A--T---T-CTTT---TTTTTTGA---------------CCGTGGA-GAACTTCA-----ATATCAGTTGGT-AGGTT---ATTTT-------------------T-AACGA---T--TT---GCT------TGCT---------------------------------------------------------TC----AT--CTTAGTGTTTTTTTCCCCCCT-----CGTACCTT----------TC--GACA-GGGG---T-------------------------AGTGTA----------CAAGTGATTTAAC----------------------------AAATTTGATTTCTTTAATGTGATATATSizeHit CountTotal NormTotal
No Reads
droTak1
ATATACT-----------------------------------------------------------------------------------------------------------------------AT-------TT-------------TAT----------------------------GCGA-----------------------TTTTT-----------CAT-TTGATTTTTAGACCC----CCCATGAT-----GAT------TCTTTCTTGACCTTAAG--------------------------------CCTTATA-------------------TGCATG-A--T---TTCTTT---TTTTTTCATTTTTT-------TTCCGTGGAGAAACTTCA-----ATATCAGTTGGT-AGGTT---ATTTT-------------------T-AATGATGAT--TT---GCT------TGCTTTGC-----------------T---TT-------------------TT---------------TTTT--------------------------CGTACCAT----------TC--AAGA-GGGG--TTAGTA--------------------GTGTGTA----------CAAGTGATTTAAC----------------------------AAATTTGATTTCTTTAATGTGATATATSizeHit CountTotal NormTotal
No Reads
droEug1
TTTTGTTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCC--------------TT------GATTTTTCTTTTTGATTTACCTTTGAT--------------TT-----------GAT------TCGTTCTTGACCTTAAG--------------------------------CCTTTGATATATATATATATGTAGAAAATAGG-A--T---T-TTT-----TTT-------------------CTGTGGA-GAACTTCA-----ATATCAGCTAGT-AGGTT---ATATA------------ATATATTT-AAAGA---T--TT---GCT------TGCT---------------------------------------------------------TTTTTTTTTT--------------------------TGTACCAT----------TC--AACAGGGAG--GGAG-AAGGTGTAACTCTACCCATCTCTCTCTA----------CAAGTGATTTAAC----------------------------AAATTTTATTTGTTTAATGTGATATATSizeHit CountTotal NormTotal
No Reads
dm3
ATGTAT----------------------------------------------------------------------------------------ATGC---AAGATTT------GTATATCCTCCTACTTTTTTTTT-------------TTT----------------------------GCAA------------------------------------TTTACT-TTGATTT----AGCT----TC-----------GAT------CCTTTCTTGACATTAAG--------------------------------CCCTA---------------------AATATG-A--T---T-T--------TT-------------------TTCTGGA-GAACTTCA-----ATATCAGTTAGT-AGGTT---ATGTT-------------------T-AACGA---T--TT---GCT------TGCG---C-----------------T---TTTT----------CCGCTTTTT-----TT----TTTGTTTT-----------TTTACCATACCATACCATACCAT----------AC--AA---GGGG--TTA-----------------------GAGTTTA----------CGAGTGATTTAAC----------------------------AAATTTGATTTCTTCAATGTGATATATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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droSim2
GTATAC------------------------------------------------------------------------------------------------------------------CCTCCTAA------TTT-------------TTG----------------------------GCGA------------------------------------TTTACT-TTGATTT----AGCT----TC-----------GAT------TCTTTCTTGACACTAAG--------------------------------CCCTA---------------------AATATG-A--G---T-T---------T-------------------TTGTGGA-GAACTTCA-----ATATCAGTTAGT-AGGTT---ATGTT-------------------T-AACGA---A--TT---GCT------TGCG---C-----------------T---TTTTTTT-------CTTCTTTTTTTCT-TT----TTTTTTTT--------------------------TTTACCAT----------AC--AA---GGGG--TTA-----------------------GAGTTTA----------CGAGTGATTTAAC----------------------------AAATTTGATTTCTTCAATGTGATATATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCAT----------AC--AA---GGGG--TTA-----------------------GAGTTTA----------CGA.................................................................27114.001400000075010010000
.......................................................................................................................................................................................................................................................................................................................................................................................................TGTGGA-GAACTTCA-----ATATCAGTTAGT-............................................................................................................................................................................................................................................................................................................2614.00400000040000000000
......................................................................................................................................TTT-------------TTG----------------------------GCGA------------------------------------TTTACT-TTGATTT----AGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.00300000011100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTA----------CGAGTGATTTAAC----------------------------AAATTTGAT..................2513.00300001002000000000
...............................................................................................................................................................................................................................................................................TTTCTTGACACTAAG--------------------------------CCCTA---------------------AATATG-A--..................................................................................................................................................................................................................................................................................................................................................................................2713.00300000012000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCAT----------AC--AA---GGGG--TTA-----------------------GAGTTTA----------CGAG................................................................2812.00200000011000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TCA-----ATATCAGTTAGT-AGGTT---ATGTT-------------------............................................................................................................................................................................................................................................................................2512.00200000010000010000
..................................................................................................................................................................................................................................................................................................................................................................................T-------------------TTGTGGA-GAACTTCA-----ATATCAGTTAGT-............................................................................................................................................................................................................................................................................................................2812.00200000011000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GGTT---ATGTT-------------------T-AACGA---A--TT---GCT------.................................................................................................................................................................................................................................................2112.00200000000002000000
......................................................................................................................................................................................................................................................................................................................................................................T-T---------T-------------------TTGTGGA-GAACTTCA-----ATATCAGT.................................................................................................................................................................................................................................................................................................................2612.00200000002000000000
......................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGA-GAACTTCA-----ATATCAGTTAGT-............................................................................................................................................................................................................................................................................................................2712.00200000002000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................TGGA-GAACTTCA-----ATATCAGTTAGT-AGGT........................................................................................................................................................................................................................................................................................................2812.00200000002000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TT---ATGTT-------------------T-AACGA---A--TT---GCT------TGCG---C-----------------T---TT..................................................................................................................................................................................................................2712.00200010000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTA----------CGAGTGATTTAAC----------------------------AAATTTGATT.................2612.00200000000001010000
..........................................................................................................................TCCTAA------TTT-------------TTG----------------------------GCGA------------------------------------TTTACT-TTGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.00200000020000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................TATCAGTTAGT-AGGTT---ATGTT-------------------T-AA........................................................................................................................................................................................................................................................................2411.00100000000000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TT---ATGTT-------------------T-AACGA---A--TT---GCT------TGCG---C-----------------T---T...................................................................................................................................................................................................................2611.00100000010000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGA---A--TT---GCT------TGCG---C-----------------T---TT..................................................................................................................................................................................................................1911.00101000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTA----------CGAGTGATTTAAC----------------------------AAATTTGAA..................2511.00100000000000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................TGTGGA-GAACTTCA-----ATATCAGTTA...............................................................................................................................................................................................................................................................................................................2411.00100010000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTA----------CGAGTGATTTAAC----------------------------AAATTTGAT..................2611.00100000000000001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGTTAGT-AGGTT---ATGTT-------------------............................................................................................................................................................................................................................................................................2011.00100000000001000000
........................................................................................................................................................................................................................................................................................................................................................................T---------T-------------------TTGTGGA-GAACTTCA-----ATATC....................................................................................................................................................................................................................................................................................................................2211.00100000000001000000
......................................................................................................................................................TTG----------------------------GCGA------------------------------------TTTACT-TTGATTT----AG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000001000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGT-AGGTT---ATGTT-------------------............................................................................................................................................................................................................................................................................1521.00200000000002000000
......................................................................................................................................TTT-------------TTG----------------------------GCGA------------------------------------TTTACT-TTGATTT----AG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000001000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................TTCA-----ATATCAGTTAGT-AGGTT---ATGTT-------------------............................................................................................................................................................................................................................................................................2611.00100000010000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGT-AGGTT---ATGTT-------------------T-AACGA---A--TT---G.........................................................................................................................................................................................................................................................2511.00100000000010000000
.......................................................................................................................................................................................................................................................................................................................................................................................................TGTGGA-GAACTTCA-----ATATCAGTTAGT-AGGT........................................................................................................................................................................................................................................................................................................3011.00100000001000000000
...........................................................................................................................................................................................................................................................................................AAG--------------------------------CCCTA---------------------AATATG-A--G---T-T---------T-------------------TTGT..........................................................................................................................................................................................................................................................................................................................................2311.00100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGA-GAACTTCA-----ATATC....................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................TATCAGTTAGT-AGGTT---ATGTT-------------------T-AACGA---A--...............................................................................................................................................................................................................................................................2811.00100000001000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................GTT-------------------T-AACGA---A--TT---GCT------TGCG---C-----------------T---T...................................................................................................................................................................................................................2211.00100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGT-AGGTT---ATGTT-------------------T-AACGA---A--TT---GC........................................................................................................................................................................................................................................................2611.00100000010000000000
..................................................................................................................................................................................................................................................................................................................................................................................T-------------------TTGTGGA-GAACTTCA-----ATATCAGTTA...............................................................................................................................................................................................................................................................................................................2611.00100000000010000000
.............................................................................................................................TAA------TTT-------------TTG----------------------------GCGA------------------------------------TTTACT-TTGATTT----AG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000000000
....................................................................................................................................................................................................................................TTGATTT----AGCT----TC-----------GAT------TCTTTCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000000100000
...................................................................................................................................................................................................................................................................................................................................................................................................................TCA-----ATATCAGTTAGT-AGGTT---ATGTT-------------------T-AACGA---..................................................................................................................................................................................................................................................................3111.00100000010000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................T---ATGTT-------------------T-AACGA---A--TT---GCT------TGCG---C-----------------T---TT..................................................................................................................................................................................................................2611.00100000010000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------AC--AA---GGGG--TTA-----------------------GAGTTTA----------CGAGTGAT............................................................2711.00100000000000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-----------------------GAGTTTA----------CGAGTGATTTAAC----------------------------AA.........................2411.00100000000100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----------CGAGTGATTTAAC----------------------------AAATTTGAT..................2311.00100000000001000000
.......................................................................................................................................TT-------------TTG----------------------------GCGA------------------------------------TTTACT-TTGATTT----AGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................TGGA-GAACTTCA-----ATATCAGT.................................................................................................................................................................................................................................................................................................................2011.00100000010000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................T---ATGTT-------------------T-AACGA---A--TT---GCT------TGCG---C-----------------T---T...................................................................................................................................................................................................................2511.00100000000100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAGTTAGT-AGGTT---ATGTT-------------------T-AACGA---A--...............................................................................................................................................................................................................................................................2911.00100000001000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTAAC----------------------------AAATTTGATTTCTTC............2311.00100010000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................TATCAGTTAGT-AGGTT---ATGTT-------------------T-AACGA---..................................................................................................................................................................................................................................................................2711.00100000010000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TT---ATGTT-------------------T-AACGA---A--TT---GCT------TGCG---C-----------------........................................................................................................................................................................................................................2411.00100000010000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-AACGA---A--TT---GCT------TGCG---C-----------------T---TT..................................................................................................................................................................................................................2011.00100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAC----------------------------AAATTTGATTTCTTCAATGTGA.....2811.00100000010000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................GTT-------------------T-AACGA---A--TT---GCT------TGCG---C-----------------T---TTT.................................................................................................................................................................................................................2411.00100000000000100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-----------------------GAGTTTA----------CGAGTGATTTAAC----------------------------AAATT......................2711.00100000001000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------AC--AA---GGGG--TTA-----------------------GAGTTTA----------CGAGTGATT...........................................................2811.00100000000000001000
........................................................................................................................................................................................................................................................................................................................................................................T---------T-------------------TTGTGGA-GAACTTCA-----ATATCAGT.................................................................................................................................................................................................................................................................................................................2511.00100010000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--AA---GGGG--TTA-----------------------GAGTTTA----------CGAGTGATT...........................................................2611.00100000010000000000
..................................................................................................................................................................................................................................................................................................................................................................G---T-T---------T-------------------TTGTGGA-GAACTT................................................................................................................................................................................................................................................................................................................................1711.00100000000001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTAGT-AGGTT---ATGTT-------------------............................................................................................................................................................................................................................................................................1720.50100000000001000000
droSec2
GTATAC------------------------------------------------------------------------------------------------------------------CCTCCTAA------TTT-------------TTG----------------------------GCGA------------------------------------TTTACT-TTGATTT----AGCT----TC-----------GAT------TCTTTCTACACACTAAG--------------------------------CCCTC---------------------AATATG-A--T---T-T---------T-------------------TTGTGGA-GAACTTCA-----ATATCAGTTAGT-AGGTT---ATGTT-------------------T-AACGA---A--TT---GCT------TGCG---C-----------------T---TTTTTTT-------CTTCTTTTTTTCT-TT--------TTTT--------------------------TTTACCAT----------AC--AC---GGGG--TTA-----------------------GAGTTTA----------CGAGTGATTTAAC----------------------------AAATTTGATTTCTTCAATGTGATATATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................GTT-------------------T-AACGA---A--TT---GCT------TGCG---C-----------------T---....................................................................................................................................................................................................................2111.0010010
............................................................................................................................................................................................................................................................................................................................................................................................................................................T---ATGTT-------------------T-AACGA---A--TT---GCT------TGC..............................................................................................................................................................................................................................................2111.0010010
..................................................................................................................................................................................................................................................T----TC-----------GAT------TCTTTCTACACACTAAG--------------------------------CCCTC---------------------A...........................................................................................................................................................................................................................................................................................................................................................................................2911.0011000
.............................................................................................................................................................................................................................................................................................G--------------------------------CCCTC---------------------AATATG-A--T---T-T---------T-------------------TTGTGGA-G.....................................................................................................................................................................................................................................................................................................................................2511.0010010
...................................................................................................................................................................................................................................................................................................................................................................................................................TCA-----ATATCAGTTAGT-AGGTT---ATGTT-------------------T-..........................................................................................................................................................................................................................................................................2611.0011000
........................................................................................................................................................................................................................................TTT----AGCT----TC-----------GAT------TCTTTCTACACAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------AC--AC---GGGG--TTA-----------------------GAGTTTA----------CGAGTGA.............................................................2611.0011000
.............................................................................................................................................................................................................................TTTACT-TTGATTT----AGCT----TC-----------GAT------T......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
.........................................................................................................................................................................................................................................................................................................................................................ATATG-A--T---T-T---------T-------------------TTGTGGA-G.....................................................................................................................................................................................................................................................................................................................................1811.0010010
.................................................................................................................................................................................................................................................................................................................................TC---------------------AATATG-A--T---T-T---------T-------------------TTGTGGA-GAACTTCA-----.........................................................................................................................................................................................................................................................................................................................2811.0011000
........................................................................................................................................................................................................................................................................................................................................................AATATG-A--T---T-T---------T-------------------TTGTGGA-GAACTTCA-----.........................................................................................................................................................................................................................................................................................................................2611.0010010
.........................................................................................................................................................................................................................................TT----AGCT----TC-----------GAT------TCTTTCTAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
droYak3
GTATAT------------------------------------------------------------------------------------------AC---AGGATCT------GTATACCCTCCTAT-------T--------------TTT----------------------------GCGA------------------------------------TATACTTTTGATTT----AGCT----TC-----------GAT------TCTTTCTTGACATTAAG--------------------------------CCTTA---------------------AATATG-A--T---T-T------TTTT-------------------TTGTGGA-GAACTTCA-----ATATCAGTTAGT-AGGTT---ATGTT-------------------T-AACGA---T--TT---GCT------TGCA---T-----------------T---TTAT----ATA---TATATTTTT-----TT--------TTTG--------------------------TTTACCAT----------AC--AA---GGGG--TTA-----------------------TAGTGTA----------CAAGTGATTTAAC----------------------------AAATTTGATTTCTTCAATGTGATATATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................................................................................................................................................................................................................................................CT----TC-----------GAT------TCTTTCTTGACATTAAG--------------------------------CCT...................................................................................................................................................................................................................................................................................................................................................................................................................2713.00300000000003
......................................................................................................................................................................................................................................GATTT----AGCT----TC-----------GAT------TCTTTCTTGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00201100000000
..........................................................................................................................................................................................................................................T----AGCT----TC-----------GAT------TCTTTCTTGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TCA-----ATATCAGTTAGT-AGGT........................................................................................................................................................................................................................................................................................................1911.00101000000000
.........................................................................................................................................................................................................................................................................................................................................................ATATG-A--T---T-T------TTTT-------------------TTGTGGA-GA....................................................................................................................................................................................................................................................................................................................................2211.00100100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................CTTCA-----ATATCAGTTAGT-AGGTT---....................................................................................................................................................................................................................................................................................................2211.00100100000000
.............................................................................................................................................................................................................................TATACTTTTGATTT----AGCT----TC-----------GAT------TCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTAAC----------------------------AAATTTGATTT................1911.00101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAT----------AC--AA---GGGG--TTA-----------------------TAGTGT...............................................................................2111.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTG--------------------------TTTACCAT----------AC--AA---GGG..................................................................................................................1911.00101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG--TTA-----------------------TAGTGTA----------CAAGTGATTT..........................................................2211.00100000010000
.................................................................................................................................................................................................................................................CT----TC-----------GAT------TCTTTCTTGACATT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC--AA---GGGG--TTA-----------------------TAGTGTA----------CAA.................................................................2111.00100000010000
..............................................................................................................................................................................................................................ATACTTTTGATTT----AGCT----TC-----------GAT------T......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................T-T------TTTT-------------------TTGTGGA-GAACTTCA-----.........................................................................................................................................................................................................................................................................................................................2111.00100000010000
..................................................................................................................................................................................................................................................................................................................................A---------------------AATATG-A--T---T-T------TTTT-------------------TTGTGGA-GAACT.................................................................................................................................................................................................................................................................................................................................2711.00100100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---GGGG--TTA-----------------------TAGTGTA----------CAAGT...............................................................2011.00100000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAT----------AC--AA---GGGG--TTA-----------------------TAGTGT...............................................................................2211.00100000010000
............................................................................................................................CTAT-------T--------------TTT----------------------------GCGA------------------------------------TATACTTTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
..........................................................................................................................................................................................................................................T----AGCT----TC-----------GAT------TCTTTCTTGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTA----------CAAGTGATTTAAC----------------------------AAA........................2111.00100000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--AA---GGGG--TTA-----------------------TAGTGTA----------CAAGT...............................................................2211.00100000010000
...............................................................................................................................................................................................................................TACTTTTGATTT----AGCT----TC-----------GAT------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
...............................................................................................................................................................................................................................................AGCT----TC-----------GAT------TCTTTCTTGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGT-AGGTT---ATGTT-------------------T-AACGA---T--TT---GCT------.................................................................................................................................................................................................................................................2711.00101000000000
droEre2
GTATAC------------------------------------------------------------------------------------------------------------------CCTCCTAT-------TT-------------TTT----------------------------GCGA------------------------------------TTTACTTTTGATTA----AGCT----TC----------GGAT------CCTTTCTTGACATTAAG--------------------------------CCTTA---------------------AATATG-C--T---T-CTTT---TTTTATTATTA-------TTATTTTGTGGA-GAGCTTCA-----ATATCAGTTAGT-AGGTT---ATGTT-------------------T-AACGA---T--TT---GCT------TGCA---T-----------------T---TTTTTTT-------TAAATTTTATTTT-TT--------ATCT--------------------------TTTACCAT----------AC--AA---GGGG--TTA-----------------------GAGTGTA----------CAAGTGATTTAAC----------------------------AAATTTGATTTCTTCAATGTGATATATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................TTCA-----ATATCAGTTAGT-AGGTT---ATGTT-------------------............................................................................................................................................................................................................................................................................26112.001200000012
...................................................................................................................................................................................................................................................................................................................................................................................................................TCA-----ATATCAGTTAGT-AGGTT---ATGTT-------------------............................................................................................................................................................................................................................................................................25110.001000000010
......................................................................................................................................................TTT----------------------------GCGA------------------------------------TTTACTTTTGATTA----AGCT----TC----------GGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................3016.0060000006
.......................................................................................................................................................................................GA------------------------------------TTTACTTTTGATTA----AGCT----TC----------GGAT------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2616.0060000006
..................................................................................................................................................................................................................................................................................................................................................................................................................................................GTT-------------------T-AACGA---T--TT---GCT------TGCA---T-----------------T---TTT.................................................................................................................................................................................................................2411.0010000010
..................................................................................................................................................................................................................................................T----TC----------GGAT------CCTTTCTTGACATTAAG--------------------------------CCT...................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
......................................................................................................................................................................................................................................GATTA----AGCT----TC----------GGAT------CCTTTCTTGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAT----------AC--AA---GGGG--TTA-----------------------GAGTGTA----------CAAGT...............................................................2811.0010001000
.........................................................................................................................................................................................................................................................................................................................................................................................A-------TTATTTTGTGGA-GAGCT.................................................................................................................................................................................................................................................................................................................................1811.0011000000

Generated: 06/08/2015 at 03:08 PM