ID:

dpe_751

 Coordinate:

scaffold_13:1615895-1616045 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-8.4 -8.0 -8.0

Flybase annnotation

CDS [Dper\GL13094-cds]; exon [dper_GLEANR_13273:2]; intron [Dper\GL13094-in]

Repeatable elements

NameClassFamilyStrand
(CAG)nSimple_repeatSimple_repeat+
mature
star
  1. scaffold_10:1695371-1695389 +
  2. scaffold_41:27890-27908 +
  3. scaffold_0:4434059-4434077 +
  4. scaffold_0:9283643-9283661 +
  5. scaffold_2:2045109-2045127 +
  6. scaffold_2:6623220-6623238 +
  7. scaffold_77:96526-96544 +
  8. scaffold_3:2692181-2692199 +
  9. scaffold_4:1034852-1034870 +
  10. scaffold_4:1767282-1767300 +
  11. scaffold_4:6701066-6701084 +
  12. scaffold_5:3453224-3453242 +
  13. scaffold_9:3194190-3194208 +
  14. scaffold_12:1630610-1630628 +
  15. dpe_751  scaffold_13:1615949-1615967 +
  16. scaffold_17:815671-815689 +
  17. dpe_782  scaffold_15:136558-136576 +
  18. scaffold_39:431211-431229 +
  19. scaffold_35:120345-120363 +
  20. scaffold_36:373228-373246 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ACAACAAAGAAATGCATTAGCACAAGTGGCGGCAGCAACAGAAATCACTGGACAGTGCGGCTGCAACATCATAATCATCATCATCGACAGCGGCAGCAGCAGCAGCAACAACAGCAGCAGCAGCAACAGCAGCATCATCATCAACAGCTAAGCCTAAACATCTGTCGAGGTTATTCATCATCATTTTTCGGTCTATTCCAGAATGCAGCACAGGCTGGCGTGGCCAAAACCAACAACTATGCCACGGAGGC
********************************************************************************************************...............((.((....)).)).................(((((..((....))..)))))......................********************************************************* 		Read size # Mismatch Hit Count Total Norm Total M021
embryo
 M042
female body
 V042
embryo
 V057
head
 V111
male body
.......................................................................................................................................................................................................AAAATGCAGCACAGGCTG.................................. 18 1 1 4.00 4 4 0 0 0 0
.............................................CACTGGACAGTGCGGCTGCAAC........................................................................................................................................................................................ 22 0 1 2.00 2 2 0 0 0 0
...............................................................................................................................................................................CATCATCATTTTTCGGTCT......................................................... 19 0 1 2.00 2 2 0 0 0 0
.................................AGCAACAGAAATCACTGGA....................................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0
....................................................................................................................................................................................................................................ACCAACAACTATGCCACGGAG.. 21 0 1 1.00 1 0 1 0 0 0
.............................................................................TCATCATCGACAGCGGCGGC.......................................................................................................................................................... 20 1 1 1.00 1 0 0 0 0 1
............................................................................................................................................................................................................GCAGCACAGGCTGGCGTGGCCAAAACC.................... 27 0 1 1.00 1 0 1 0 0 0
.....................................................................................................................................................................................CATTTTTCGGTCTATTCCAGA................................................. 21 0 1 1.00 1 1 0 0 0 0
..........................................AATCACTGGACAGTGCAGCTGC........................................................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0
.................................................................................................................................................................................................................................AAAACCAAGAACTATGCCACGGAG.. 24 1 1 1.00 1 0 1 0 0 0
..........................................AATCACTGGACAGTGCGGCTGG........................................................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0
..........................................................................................................................................................................................................ATGCAGCACAGGCTGGCGTGGCCA......................... 24 0 1 1.00 1 0 0 1 0 0
..................................................................................................................................................................................CATCATTTTTCGGTCTATTCC.................................................... 21 0 1 1.00 1 1 0 0 0 0
........................................................................................................................................................................................................................................ACAACTATGCCACGGAGG. 18 0 1 1.00 1 0 0 1 0 0
...................................................ACAGTGCGGCTGCCACATC..................................................................................................................................................................................... 19 1 1 1.00 1 0 0 0 1 0
...........................................................................................................................................................................................................TGCAGCACCGGCTGGGGGGGCC.......................... 22 3 2 0.50 1 0 0 1 0 0
............TGCATTGGCACAGGTGGCGGC.......................................................................................................................................................................................................................... 21 2 2 0.50 1 0 0 0 1 0
..............................................................................CATCATCGACAGCGGCAGG.......................................................................................................................................................... 19 1 3 0.33 1 1 0 0 0 0
...........................................................................................................................................................................................................TGCAGCACCGGCTGGGGGGGC........................... 21 3 18 0.06 1 0 0 1 0 0
........................................................................................................GCAACAACAGCAGCAGCAG................................................................................................................................ 19 0 20 0.05 1 0 0 1 0 0
............................................................................................................CAACAGCAGCAGCAGCAACA........................................................................................................................... 20 0 20 0.05 1 0 1 0 0 0
....................................................................................................................GCAGCAGCAACAGCAGCA..................................................................................................................... 18 0 20 0.05 1 0 0 1 0 0
................................................................................................................AGCAGCAGCAGCAACAGCAGCA..................................................................................................................... 22 0 20 0.05 1 0 0 1 0 0
..............................................................................................AGCAGCAGCAGCAACAACA.......................................................................................................................................... 19 0 20 0.05 1 0 1 0 0 0
.........................................................................................................CAACAACAGCAGCAGCAGC............................................................................................................................... 19 0 20 0.05 1 0 0 1 0 0

Anti-sense strand reads

TGTTGTTTCTTTACGTAATCGTGTTCACCGCCGTCGTTGTCTTTAGTGACCTGTCACGCCGACGTTGTAGTATTAGTAGTAGTAGCTGTCGCCGTCGTCGTCGTCGTTGTTGTCGTCGTCGTCGTTGTCGTCGTAGTAGTAGTTGTCGATTCGGATTTGTAGACAGCTCCAATAAGTAGTAGTAAAAAGCCAGATAAGGTCTTACGTCGTGTCCGACCGCACCGGTTTTGGTTGTTGATACGGTGCCTCCG
*********************************************************...............((.((....)).)).................(((((..((....))..)))))......................******************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V057
head
 V111
male body
.....................................................................................................................................................TTCGGGTTTGTAGACGGCAC.................................................................................. 20 3 6 0.17 1 1 0
....................................................................................GCTGTCGCCGTCGTCGTCGT................................................................................................................................................... 20 0 8 0.13 1 1 0
....................................................................................................................................................................AGCTTAAAAAAGTAGTAGTAA.................................................................. 21 3 9 0.11 1 1 0
............................................................................................................................TTTTCGTCGTAGAAGTAGTT........................................................................................................... 20 2 12 0.08 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_13:1615845-1616095 + dpe_751 ACAACA--AAGAA-------------------ATGC------------------------ATT-AGCACAAGTGGCGGC--------------------------------------------------------------------------AGC---AACAGAAATCACTGG---------------------------------ACAGTGCGGC------TGCAACATCATAATCATCA------------------T--CAT---------------------CGACAGCGG-------------------------------------------------------CAGCAGCAGCA------------------G---CAA----------CAACAGCAGCAGC------AGCAACAGC----------------AG---------CAT--------------------------------------------------CATCATCAAC--------------------------------------------AGCTAAGCCT---------AAACAT--------------CTGTCGAG------------GT--------------------------------TATTCATCATCATTTTTCGGT-----C--TATTCCAGAATGCAGCACAG--------GCTGGCG----------TGGCCA--------------AAAC---------------------------CAACAACTATGCCACGGAGGC
dp5 XL_group1a:7011202-7011437 + ACAACA--AAGAA-------------------ATGC------------------------ATT-AGCACAAGTGGCGGC--------------------------------------------------------------------------AAC---AACAGCAATCACTGG---------------------------------ACAGTGCGGC------TGCAACATCATAATCATCA------------------T--CAT---------------------CGACAGCGG---CAG----------------------------------------------------C------A------------------G---CAG----------C---------AGC------AGCAACGGC----------------AG---------CAT--------------------------------------------------CATCATCAAC--------------------------------------------AGCTAAGCCT---------AAACAT--------------CTGTCGAG------------GT--------------------------------TATTCATCATCATTTTTCGGT-----C--TATTCCAGAATGCAGCACAG--------GCTGGCG----------TGGCCA--------------AAAC---------------------------CAACAACTATGCCACGGAGGC
droWil2 scf2_1100000004909:3798362-3798600 - ACAACA--G----------------CAGCA---G--CAGCAGGCTGCGCCACCGCCCACA-----T-CTCAACACCAGC--------------------------------------------------------------------------AGC---AACA-------AA--TGCATCA-------------------------------------------------CCATCACCAC-----------------------CAT---------------------CAACAGCAG---CAGCAGCAACAA----------------CAACAACAACAGCAAC------------------------------------------AACA-------------------GCAACAACAACAAC---AAC---AGCAG-CAGCAG--------------------------------------------------------------------C-----------------------------------------------AATC-------------------------------------TTC-AAGAT------------------------CGGCAGCT----------------------AGTCCCCTGT-----C--TCCGCCAAGACCTGGCCCAGGAAGTGCTGCTGCTG----------CTGCCG--------------CAGC---------------------------GAATAGTTATGCCA-------
droVir3 scaffold_12970:2622618-2622877 + ACAACA--A----------------CAGC---ATGC------------------------AAC-GCCAGCAACAAC-----------------------------------------------------------------------------AGC---AACAT-------C--AGCAACACGATGACATTAGCTATATTGATAGCGACGATACACC------GACAAGCACAGCAGCAACAGTTGCTGCTGCAGCAGCAACA--A-------------------------------------------------------------CAACAGCAA------CAG---------C------A------------------G---CAGCA-------------------GCAACAACAACAAC---GTC----------------TGGAG--------------------------------------------------------------CAAC----------------------------------------------------------------AACAT--------------CGGG---C------------CA--------------------------------AAAGC-TGGCCAATATTTGTT-ATTTT--AAGCCCATAACGCCGCCCTT--------GCAGCTG----------C----G--------------AAGC---------------------------CAACAGCTGAGCAGCAGCAGC
droMoj3 scaffold_6473:8708219-8708428 - CAA-CA--G-AAGCAGCAGA-------------------------------------------------------------------------------AG---------------------------------TTACAGT-------------------------------------------------------------------------------------GACAACAACAATAACA------------------GGA--G----------------------------------------------------------------------------------------------CAACTACAACAGCAATGTTAACAGCAG----------C---------AAC------A------ACATT------GGACGACAA--------------------------------------------------------------------CAAC--------------------------------------------ATAAAAACCACCTAAGATTTGACAG--------------CAGACGCA------------GT--------------------------------TATTCATCGTCATTTTTCGGT-----T--TATTCCAGAATGCAGCACAG--------GCCGGTG----------TCGCAA--------------AGAC---------------------------CAATAATTATGCCACCGAAGC
droGri2 scaffold_15106:4891-5142 - ACAATC--ATCAT-------------------ATGC------------------------AAC-AGCATCAGCA--------------------------------------------------------------------------------AC---AGCA-------GA--GTCAGCT----------------------------GCAACAGCAGCAGCTGCAACAGC---AACAATT-----------------------T---------------------CAACAGCTG---------------------CAGCAGCAGC----------------------------------------------------------AGCTGCAACAGC-AACA------------------------AATGCAGC-------TGCAATTGCAGCAA-------------------------------------------------C-A---------------------------------GCAGCAGT-----------CGCAGAGC------------AACATGTTGTCGCGTGAGGATATGGAG------------GA--------------------------------TATTGAT--GCATTTCTCAAT-----C--TATCGC----------CCCT--------GCAACCGCTTGCAAGCAACAATA--------------ATAA---------------------------CAACAACAATACCACGG----
droAna3 scaffold_12929:3174854-3175096 + ATA-CA--C--------------------------------------------------------------------------------------AAAGCG---------------------------------TTGCAATAACAAC------AAC---AGTAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTCGCACGATCA------------------G---CTG----------CA---------AC------AAC------AATAGCAAC-------AATAACATCAACCGGAAGAGGAATACAACCGGAAATGGAGAAAGGATACT---ACTACAACAAC-A---------------------------------ACAACAAT-----------CATCATCATCA-----------------------------------CTGATATCTGTTAGA--------------------------------TATTCATCGTCGTTTTTCGGT-----T--TATTCCAGAATGCAGCATCA--------GCTGGTG----------TGGCAA--------------AAAC---------------------------CAACAACTATGCCACGGAGGC
droBip1 scf7180000395568:5711-5948 - ACAACA--A----------------CACAA---A--C-----------------------AC---------------------------------AAAGTG---------------------------------TTGCAAC-------------------------------------------------------------------------------------AGCAACAGCAATCGTA------------------CGA--T----------------------------------------------------------------------------------------------CAGCTGCAACA---------A---CCG----------G------------AAGAACAAC------AACAATA----------------------------------TACCAGGAAATGGAAAAAGGATACTGCAACTACAACAAC-A---------------------------------ACATCAATATCAA-----CATCC-------------------------------------ATC-ACTGATAGCGGTTAGA--------------------------------TATTCATCGTCGTTTTTCGGT-----T--TATTCCAGAATGCAGCATCA--------GCTGGTG----------TGGCAA--------------AAAC---------------------------CAACAACTATGCCACGGAGGC
droKik1 scf7180000302469:107077-107258 + ACAACA--A----------------CGACTTAATAC------------------------AATCAAAACAA------------------------ATAGCG---------------------------------CAGCCAT-------------------------------------------------------------------------------------AACAAC------AA-----------------------CAT---------------------CGC----------------------------------------------------C------------------A------------------G---CGG----------A------------AAGAACAAC------AACAACAGC-------TA--------------------------------------------------------------------TGGA--------------------------------------------ATGC----------------AACAT------------------TGCA------------GA--------------------------------TATTCATCGTCGTTTTTCGGT-----T--TATTCCAGAATGCAGCACAG--------GCTGGCG----------TTACGA--------------AAAC---------------------------CAACAATTATGCCACGGAAGC
droFic1 scf7180000453833:618379-618631 - GCATCACCATCAG---CAGC-------------AGC------------------------AAC-AACAT-----------------------------------------------------------------ATGCAAC---AGCAGCAGCAAC---AAC------------ACCAGCA----------------------------ACAGCAAC---------------------AA-----------------------CATCAGCAACAGCAACAACAT---CAACAACAG---------------------CAGCAGCAGC----------------------------------------------------------ATCAGCAACAGC-AGCA------AC------ATC------AACAACAGC-------AGCAACATCAACAGC--------------------------------------------------AGCAGCAGC--------------------------------------AACAACATCCCAGC---------------ATTGGCATGTTTGATGCCAACGAG------------GT----------------------------------------------CAACGAT-----G--TCATCCAGAATGCTCCCCAA--------ATCGGGG----------TATTCC--------------AGTC---------------------------TAACAG--------------C
droEle1 scf7180000491272:509358-509597 - GCAGCA--A----------------CAGT----CGC------------------------ATC-ACCAGCAACAGCAGC------------------AGCAACATGCCGCCTACCAGCAGCACAATATGTATGC--------------------CC---AGCA-------GC---------------------------------------AGC------------AGCAGCAACATCACCAGCAGCAGCATCA-----------G---------------------------------------------CATCACTTC----------------------------------CACCACCA------------------G---CAG----------CA---------AC------A------GCAAC------AG-CAGCAG--------------------------------------------------------------------CAACAGACGCATCATTCGCATCACCACGG-T-----------CAT---AGTCATGACAA---------------------------------------------------------------CAGCAACATGT--------------------------------------------------------C--------GCTGCCC----------TCGCCA--------------ACGG---------------------------CAGCAGCT--GCTGCGGCGGC
droRho1 scf7180000777217:250452-250681 + GCAACA--G----------------CAGTA---T--CGAGGAGC-------------CAG-------TCAAATGTTGGCCGCAAGAAACAATCTG---GTG---------------------------------ATGCAAC-------------------------------------------------------------------------------------AACAACAGCAGCAACA-----------------------CCAA---------------CAG---------CAGCAG-------------------------------------------------CAATACCACCA------------------G---CAA----------CA---------AC------A------GCAAC------AG-CAGCAG--------------------------------------------------------------------CAGC--------------------------------------------ACTTGAGCCTG---------------------------------------------------------------CAGCGATTTGTT-----GCCAGTCAAAGCCAGAATTCTGT-----A--CATCTCAATCAGCAGCACAG--------GCTGCAA-------A--TAGCCA--------------AT-A---C-----------------------AACGATCACAGCCACAG----
droBia1 scf7180000301506:1355671-1355908 - TAT-CA--G-CAGCAGCAGCAGCAACAGTA---T--CGAGGAGC-------------CAG-------TCAAATGCTGGCTACCAGGAACAACCTGGTG------------------------------------ATGCAAC---AGC-------------------------------------------------------------------------------AACAGCAGCAGCAATA------------------CCA--CC------------------------AGCAGCAAC-------------------------------------------------------------A------------------GCAGCAG----------C---------ACC------A---------AC------AG-CAGCAG--------------------------------------------------------------------CAAC--------------------------------------------ACTTGAGCCTA---------------------------------------------------------------CAGCGATTTGTT-----GCCAGCCAAAGCCAGAATTCGGT-----G--CATCTCAATCAGCAGCACAG--------GCTGCAA-------A--TAGCCA--------------AT-A---C-----------------------AACGATCACAGCCACAG----
droTak1 scf7180000415256:362492-362744 + GCAGCA--A----CTGGAA-------------AAGC------------------------AGA-AGCATCCATACCAGC--------------------------------------------------------------------------AGCAACTGGA-AAAGCACC--AGC-------------------------------------------------AGCAGCAACAACAACT------------------ACA--TCAG---------------CAG-------------------------------------------------------------CAGCAGCAACAACA------------------G---CAG----------CA---------AC------AAC------AGCAGCAGC-------AGCAACATCAGCCTC--------------------------------------------------A------AC------------CGC--CAACTCAG-C-----------AACAGCAACCCA-------------------------------TTCCACCGAA------------ATCACCCATGACCCTCAGCGATATATTCAACAGCCTGGCTGA----------------------------------AGAAGAA--------TCCAATG----------TGGCGC-------------AGAAC---------------------------TACCAGCAAAATCAGGG---A
droEug1 scf7180000409524:214500-214725 + GCAGCA--G----------------CATCA---A--C-----------------------AAC-AACAGCAGCAGC-----------------------------------------------------------------------------AGC---AGCA-------TA--TGCAACA----------------------------GCATC------------AGCAGCAGCATCAACAGCAGCAGCATCAACAGCAACA--T-------------------------------------------------------------CAACAGCAA------CAG---------C------A------------------T---CAACA-------------------GCAGCAGCAACAAC---ATC------------------------------------------------------------------------------AGCAGCAGC--------------------------------------AGCAACATCCAAGC---------------ATTGGAATGTTTGATGCCAACGAG------------GT----------------------------------------------TAACGAT-----G--TCATTCAGAATCCTCCTCAA--------ATCGGAG----------TATTCC--------------AATC---------------------------TAACAG--------------C
dm3 chr3L:9702054-9702257 + ACCACC--AACAG-------------------CAGC------------------------AGC-AGCAGCAGCATC--------------------------------------------------------------AAC---AACAACA---GC---AGCA-------GC--AACATCA-------------------------------------------------ACAGCAGCAA-----------------------CATCAG---------------CAG---------CAGCAGCAACACCAACAACAGCAACACCAAC----------------------------------------------------------AGCAGCAACAGC-AACA----------------------------------------------------GA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----G--CAGCTCCAGCAGCAGCAGCA--------GCAGCA----------------------TCAAT-GGAGCGCCAACAACGGCAGCAGCAACCAAAGGAGCAACAATTATGCCA-------
droSim2 x:4287121-4287346 + GTCACT--AAAAA-------------------ATGC------------------------AAT-TGAACAAATCCATTCGATAATGAAAACACTAAAAGCG---------------------------------TTGCCAT-------------------------------------------------------------------------------------AACAACAACAACAACA------------------TCA--T----------------------------------------------------------------------------CAGCGGATGTCGGATACTTA------------------G---CAA----------CA---------AC------AAC------AACAACAGC-------ATCGATATCATCAGG-----------------------------------------------------------------------------------------------------------------------------------------------AATGGGA------------GA--------------------------------TATTCATCGTCGTTTTTCGGT-----T--TATTCCAGAATGCAGCCCAA--------GCAGGTG----------TTTCGA--------------AAAC---------------------------CAACAATTATGCCACGGAGGC
droSec2 scaffold_4:2133560-2133785 - GTCACT--AAAAA-------------------ATGC------------------------AAT-TGAACAAATCCATTCGATAATGAAAACACTAAAAGCG---------------------------------TTGCCAT-------------------------------------------------------------------------------------AACAACAACAACAACA------------------TCA--T----------------------------------------------------------------------------CAGCGGATGTCGGATACTTA------------------G---CAA----------CA---------AC------AAC------AACAACAGC-------ATCGATATCATCAGG-----------------------------------------------------------------------------------------------------------------------------------------------AATGGGA------------GA--------------------------------TATTCATCGTCGTTTTTCGGT-----T--TATTCCAGAATGCAGCCCAA--------GCAGGTG----------TTTCGA--------------AAAC---------------------------CAACAATTATGCCACGGAGGC
droYak3 3R:16926534-16926789 - GCAGCA--CAA--CCGAAA-------------TGGC------------------------------CACAAAAGCGACTGAAATTAATAACATCAGCA--------------------------------------------------------AC---AGCA-------GC--AAC-------------------------------------------------AGCAGCAACATCAGTA---------ACATCAGCAACA--A-------------------------------------------------------------------------------------CAGCAACTACA------------------G---CAA----------CAACAGCAACATC------AGCAACAGC----------------AG---------CAA--------------------------------------------------CAACAGCGAC--------------------------------------------GGCTATGACG---------------------------------------ATAACAGTAACG-----------------------------------ACGTCATCATTGCCACAAC----CAAATTTCCAGAGAGC-GCGCAG--------GCAGCAA----------CAACGACAACGGCAGGCGTGGAGC---------------------------CAACAGCGACG--ACGACGGT
droEre2 scaffold_4929:8992606-8992871 - CTG-CA--G-CAGCAGCAGCAGCAGCAGTA---T--CGGGGTGC-------------AAG-------TCATATGCTCGCCGCAAGGAGTAATCTGGTGATG---------------------------------CAGCAAC----------------------------------------------------------------------------------------AGCAGCAG------------CAGCAGCAGCAACA--CCAG---------------CAG---------CTGCAG----------------------------------------------------CAATACCA------------------G---CAG----------C---------ACC------AGCAACAGCAGC------AG-CAGCAG--------------------------------------------------------------------CAGC--------------------------------------------ACTTGAGCCTA---------------------------------------------------------------CAGCGATTTGTT-----GCCAGTCAGGGCCAGAATTCGGT-----G--CATCTCAATCAGCAGCACAG--------GCTGCAA-------A--TAGCCA--------------AT-A---CAACGAT-----------------CACAGCCACAGCCAGAGATCC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
ACAACA--AAGAA-------------------ATGC------------------------ATT-AGCACAAGTGGCGGC--------------------------------------------------------------------------AGC---AACAGAAATCACTGG---------------------------------ACAGTGCGGC------TGCAACATCATAATCATCA------------------T--CAT---------------------CGACAGCGG-------------------------------------------------------CAGCAGCAGCA------------------G---CAA----------CAACAGCAGCAGC------AGCAACAGC----------------AG---------CAT--------------------------------------------------CATCATCAAC--------------------------------------------AGCTAAGCCT---------AAACAT--------------CTGTCGAG------------GT--------------------------------TATTCATCATCATTTTTCGGT-----C--TATTCCAGAATGCAGCACAG--------GCTGGCG----------TGGCCA--------------AAAC---------------------------CAACAACTATGCCACGGAGGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
........................................................................................................................................................................CACTGG---------------------------------ACAGTGCGGC------TGCAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002200000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCATCATTTTTCGGT-----C--T....................................................................................................................1912.002200000
.........................................................................................................................................................AGC---AACAGAAATCACTGG---------------------------------A..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC---------------------------CAACAACTATGCCACGGAG..2111.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCACAG--------GCTGGCG----------TGGCCA--------------AAAC---------------------------C....................2711.001010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTTTCGGT-----C--TATTCCAGA............................................................................................................2111.001100000
.....................................................................................................................................................................AATCACTGG---------------------------------ACAGTGCGGC------TGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAGCACAG--------GCTGGCG----------TGGCCA--------------....................................................2411.001001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCATTTTTCGGT-----C--TATTCC...............................................................................................................2111.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACTATGCCACGGAGG.1811.001001000
................................................................................................................................................................................................................................................CA------------------T--CAT---------------------CGACAGCGG-------------------------------------------------------CAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................1930.331100000
............................................................................................................................................................................................................................................................................................................................................................................................G---CAA----------CAACAGCAGCAGC------AG............................................................................................................................................................................................................................................................................................................................................................................................19200.051001000
.............................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAGC------AGCAACA.......................................................................................................................................................................................................................................................................................................................................................................................20200.051010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................GCAGC------AGCAACAGC----------------AG---------CA........................................................................................................................................................................................................................................................................................................................................................18200.051001000
.................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGC------AGCAACAGC----------------AG---------CA........................................................................................................................................................................................................................................................................................................................................................22200.051001000
................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCA------------------G---CAA----------CAACA............................................................................................................................................................................................................................................................................................................................................................................................................19200.051010000
................................................................................................................................................................................................................................................................................................................................................................................................CAA----------CAACAGCAGCAGC------AGC...........................................................................................................................................................................................................................................................................................................................................................................................19200.051001000
dp5
ACAACA--AAGAA-------------------ATGC------------------------ATT-AGCACAAGTGGCGGC--------------------------------------------------------------------------AAC---AACAGCAATCACTGG---------------------------------ACAGTGCGGC------TGCAACATCATAATCATCA------------------T--CAT---------------------CGACAGCGG---CAG----------------------------------------------------C------A------------------G---CAG----------C---------AGC------AGCAACGGC----------------AG---------CAT--------------------------------------------------CATCATCAAC--------------------------------------------AGCTAAGCCT---------AAACAT--------------CTGTCGAG------------GT--------------------------------TATTCATCATCATTTTTCGGT-----C--TATTCCAGAATGCAGCACAG--------GCTGGCG----------TGGCCA--------------AAAC---------------------------CAACAACTATGCCACGGAGGCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC---------------------------CAACAACTATGCCACGGAGG.2312.0020100010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCACAG--------GCTGGCG----------TGGCCA--------------AAAC---------------------------CA...................2812.0020200000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACAG--------GCTGGCG----------TGGCCA--------------A...................................................2012.0020100010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACAG--------GCTGGCG----------TGGCCA--------------....................................................1912.0020200000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCACAG--------GCTGGCG----------TGGCC...................................................................2212.0020101000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCAGCACAG--------GCTGGCG----------TGGCCA--------------AA..................................................2712.0020100001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCAAC--------------------------------------------AGCTAAGCCT---------A...........................................................................................................................................................................................................................2011.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAGCACAG--------GCTGGCG----------TGGCCA--------------AAA.................................................2711.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCAGCACAG--------GCTGGCG----------TGGCCA--------------A...................................................2611.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC--------------------------------------------AGCTAAGCCT---------AAACAT--------------CTGTCGAG------------....................................................................................................................................................................................2711.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAGCACAG--------GCTGGCG----------TGGCCA--------------AA..................................................2611.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGT-----C--TATTCCAGAATGCAGC.....................................................................................................2111.0010001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCAGCACAG--------GCTGGCG----------TGGCC...................................................................2411.0010001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACTATGCCACGGAG..1811.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA--------------AAAC---------------------------CAACAACTATGCCACGGAGG.2611.0010010000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG--------GCTGGCG----------TGGCCA--------------AAAC---------------------------C....................2111.0010001000000
.......................................................................................................................................................................TCACTGG---------------------------------ACAGTGCGGC------TGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAG--------GCTGGCG----------TGGCCA--------------AAAC---------------------------CAAC.................2511.0010001000000
........AAGAA-------------------ATGC------------------------ATT-AGCACAAGTGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACTATGCCACGGAGGC2011.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAGCACAG--------GCTGGCG----------TGGC....................................................................2211.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAG--------GCTGGCG----------TGGCCA--------------AAAC---------------------------CA...................2411.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATGCAGCACAG--------GCTGGC...................................................................................2011.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCACAG--------GCTGGCG----------TGG.....................................................................1911.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCACAG--------GCTGGCG----------TGGCCA--------------AAAC---------------------------C....................2811.0010001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCAGCACAG--------GCTGGCG----------TGGCCA--------------....................................................2511.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--------------AAAC---------------------------CAACAACTATGCCACGGAGG.2511.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCACAG--------GCTGGCG----------TGGCCA--------------AA..................................................2311.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................C------A------------------G---CAG----------C---------AGC------AGCAACGGC----------------AG---------C.........................................................................................................................................................................................................................................................................................................................................................22120.0810000100000
..................................................................................................................................................................................................................................................................................................CAGCGG---CAG----------------------------------------------------C------A------------------G---CAG----------C---------AGC------A.............................................................................................................................................................................................................................................................................................................................................................................................20200.0510001000000
...................................................................................................................................................................................................................................................................................................AGCGG---CAG----------------------------------------------------C------A------------------G---CAG----------C---------AGC------A.............................................................................................................................................................................................................................................................................................................................................................................................19200.0510100000000
.........................................................................................................................................................................................................................................................................................................................................................................A------------------G---CAG----------C---------AGC------AGCAACGGC----------------A....................................................................................................................................................................................................................................................................................................................................................................19200.0510000100000
droWil2
ACAACA--G----------------CAGCA---G--CAGCAGGCTGCGCCACCGCCCACA-----T-CTCAACACCAGC--------------------------------------------------------------------------AGC---AACA-------AA--TGCATCA-------------------------------------------------CCATCACCAC-----------------------CAT---------------------CAACAGCAG---CAGCAGCAACAA----------------CAACAACAACAGCAAC------------------------------------------AACA-------------------GCAACAACAACAAC---AAC---AGCAG-CAGCAG--------------------------------------------------------------------C-----------------------------------------------AATC-------------------------------------TTC-AAGAT------------------------CGGCAGCT----------------------AGTCCCCTGT-----C--TCCGCCAAGACCTGGCCCAGGAAGTGCTGCTGCTG----------CTGCCG--------------CAGC---------------------------GAATAGTTATGCCA-------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC-AAGAT------------------------CGGCAGCT----------------------AGT....................................................................................................................................1912.00200020
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCT----------------------AGTCCCCTGT-----C--TCCGC................................................................................................................2011.00100010
........................................................................................................................................................................................................................................ATCACCAC-----------------------CAT---------------------CAACAGCAG---CA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-AAGAT------------------------CGGCAGCT----------------------AGTCCCCT...............................................................................................................................2211.00110000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGAAGTGCTGCTGCTG----------C.......................................................................1911.00100100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGGAAGTGCTGCTGCTG----------CTGCC...................................................................2411.00110000
....................................CAGCAGGCTGCGCCACCGCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC-AAGAT------------------------CGGCAGCT----------------------AGTCCCCT...............................................................................................................................2411.00100100
................................................................................................................................................................ACA-------AA--TGCATCA-------------------------------------------------CCATCACC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.50101000
..................................................................................................................................................................................................................................................................................................................AACAA----------------CAACAACAACAGCAAC------------------------------------------A............................................................................................................................................................................................................................................................................................................................................................................................................................22200.20400040
ACAACA--G----------------CAGCA---G--CAGCAGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2150.20100001
.............................................................................................................................................................................................................................................CAC-----------------------CAT---------------------CAACAGCAG---CAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2080.13100010
..............................................................................................................................................................................................................................................AC-----------------------CAT---------------------CAACAGCAG---CAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18140.07100010
..AACA--G----------------CAGCA---G--CAGCAGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19170.06100010
ACAACA--G----------------CAGCA---G--CAGCAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20170.06100010
.................................................................................................................................................................................................................................................................................................ACAGCAG---CAGCAGCAACAA----------------CAACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100010
..............................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAAC---AAC---AGCAG-CAGCA....................................................................................................................................................................................................................................................................................................................................................................21200.05101000
...........................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAAC---AAC---AGCAG-CAGC.....................................................................................................................................................................................................................................................................................................................................................................23200.05101000
.............................................................................................................................................................................................................................................................................................................GCAGCAACAA----------------CAACAACAACAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100010
.....................................................................................................................................................................................................................................................................................................................AA----------------CAACAACAACAGCAAC------------------------------------------AACA-------------------G.....................................................................................................................................................................................................................................................................................................................................................................................................23200.05101000
droVir3
ACAACA--A----------------CAGC---ATGC------------------------AAC-GCCAGCAACAAC-----------------------------------------------------------------------------AGC---AACAT-------C--AGCAACACGATGACATTAGCTATATTGATAGCGACGATACACC------GACAAGCACAGCAGCAACAGTTGCTGCTGCAGCAGCAACA--A-------------------------------------------------------------CAACAGCAA------CAG---------C------A------------------G---CAGCA-------------------GCAACAACAACAAC---GTC----------------TGGAG--------------------------------------------------------------CAAC----------------------------------------------------------------AACAT--------------CGGG---C------------CA--------------------------------AAAGC-TGGCCAATATTTGTT-ATTTT--AAGCCCATAACGCCGCCCTT--------GCAGCTG----------C----G--------------AAGC---------------------------CAACAGCTGAGCAGCAGCAGCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................................................................................................................................................................................................TGATAGCGACGATACACC------GACAAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................AAGCACAGCAGCAACAGTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATAACGCCGCCCTT--------GCAGCTG----------C----G--------------....................................................2511.001000000000000000000001000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAT--------------CGGG---C------------CA--------------------------------AAAGC-TGGCCAATATTTGT..............................................................................................................................2911.001000000000000000000000000000000000000000000000000000000000000010
..........................................................................................................................................................................................................TAGCGACGATACACC------GACAAGCACAGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------------CGGG---C------------CA--------------------------------AAAGC-TGGCCAAT....................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C----------------------------------------------------------------AACAT--------------CGGG---C------------CA--------------------------------AAAGC-T...........................................................................................................................................1911.001100000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC----------------------------------------------------------------AACAT--------------CGGG---C------------CA--------------------------------AAAGC-TGG.........................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................ATATTGATAGCGACGATACACC------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000010000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................CACAGCAGCAACAGTTGCTGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2260.171001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................GCTGCAGCAGCAACA--A-------------------------------------------------------------CAACAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2360.171000100000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................GCACAGCAGCAACAGTTGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1980.131001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................AGCAACA--A-------------------------------------------------------------CAACAGCAA------CAG---------C------A------------------G---CAGCA-------------------......................................................................................................................................................................................................................................................................................................................................................................................................2880.131000000000000000010000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................CAACA--A-------------------------------------------------------------CAACAGCAA------CAG---------C------A------------------G---C.............................................................................................................................................................................................................................................................................................................................................................................................................................22200.102000000000000000000000000000000020000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................AG---------C------A------------------G---CAGCA-------------------GCAACAACA.............................................................................................................................................................................................................................................................................................................................................................................................19200.102000000000000000000000000000020000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................AA------CAG---------C------A------------------G---CAGCA-------------------GCAACA................................................................................................................................................................................................................................................................................................................................................................................................19200.102002000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................CA--A-------------------------------------------------------------CAACAGCAA------CAG---------C------A------------------G---C.............................................................................................................................................................................................................................................................................................................................................................................................................................19200.102000000000000000000000000000000001000000000000000000000010000000
............................................................................................................................................................................................................................................................................................................................................GCAA------CAG---------C------A------------------G---CAGCA-------------------GCAACAA...............................................................................................................................................................................................................................................................................................................................................................................................22200.102001000000000000001000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................CAGCAA------CAG---------C------A------------------G---CAGCA-------------------GCAAC.................................................................................................................................................................................................................................................................................................................................................................................................22200.051000001000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................AGCAGCAACA--A-------------------------------------------------------------CAACAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000010000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................GCAGCAACA--A-------------------------------------------------------------CAACAGCAA------CA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000001000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................ACA--A-------------------------------------------------------------CAACAGCAA------CAG---------C------A------------------G---CAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................CAACAGCAA------CAG---------C------A------------------G---CAGCA-------------------GCAA..................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000100000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................CAACAGCAA------CAG---------C------A------------------G---CAGCA-------------------GC....................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000001000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................A-------------------------------------------------------------CAACAGCAA------CAG---------C------A------------------G---CAGCA-------------------GC....................................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000010000000000000000000000000000000000
..............................................................................................................................................................................................................................................................GCAGCAACA--A-------------------------------------------------------------CAACAGCAA------C.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000100000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................CAACAGCAA------CAG---------C------A------------------G---CAGCA-------------------......................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000010000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................CAG---------C------A------------------G---CAGCA-------------------GCAACAACAACAAC---.....................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................................................................................................AGCAGCAACA--A-------------------------------------------------------------CAACAGCAA------CAG---------............................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000001000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................A-------------------------------------------------------------CAACAGCAA------CAG---------C------A------------------G---CAGCA-------------------......................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000010000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................A------CAG---------C------A------------------G---CAGCA-------------------GCAACAACA.............................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000100000000000000000000000000000000
.............................................................................................................................................................................................................................................................AGCAGCAACA--A-------------------------------------------------------------CAACAGCAA------C.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................ACA--A-------------------------------------------------------------CAACAGCAA------CAG---------C------A------------------G---CAG...........................................................................................................................................................................................................................................................................................................................................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................AACA--A-------------------------------------------------------------CAACAGCAA------CAG---------C------A------------------G---CA............................................................................................................................................................................................................................................................................................................................................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................G---------C------A------------------G---CAGCA-------------------GCAACAACAACAAC---.....................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000000000000100000000000000000000000000
.....................................................................................................................................................................................................................................................................CA--A-------------------------------------------------------------CAACAGCAA------CAG---------C------A------------------G---CAG...........................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000010000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................AACAGCAA------CAG---------C------A------------------G---CAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................18200.051000000000000000001000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................A--A-------------------------------------------------------------CAACAGCAA------CAG---------C------A------------------G---CAGCA-------------------......................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000000000000000000000000000000000000010
......................................................................................................................................................................................................................................................................A--A-------------------------------------------------------------CAACAGCAA------CAG---------C------A------------------G---CA............................................................................................................................................................................................................................................................................................................................................................................................................................19200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
CAA-CA--G-AAGCAGCAGA-------------------------------------------------------------------------------AG---------------------------------TTACAGT-------------------------------------------------------------------------------------GACAACAACAATAACA------------------GGA--G----------------------------------------------------------------------------------------------CAACTACAACAGCAATGTTAACAGCAG----------C---------AAC------A------ACATT------GGACGACAA--------------------------------------------------------------------CAAC--------------------------------------------ATAAAAACCACCTAAGATTTGACAG--------------CAGACGCA------------GT--------------------------------TATTCATCGTCATTTTTCGGT-----T--TATTCCAGAATGCAGCACAG--------GCCGGTG----------TCGCAA--------------AGAC---------------------------CAATAATTATGCCACCGAAGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.AA-CA--G-AAGCAGCAGA-------------------------------------------------------------------------------AG---------------------------------TTACAGT-------------------------------------------------------------------------------------GACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCACAG--------GCCGGTG----------TCGCA...................................................................2211.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACAG--------GCCGGTG----------TCGCAA--------------AGAC---------------------------C....................2411.001100000
............................................................................................................................................................................................................................................ATAACA------------------GGA--G----------------------------------------------------------------------------------------------CAACTACAACAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
..................................................................................................................................................................................................................................GACAACAACAATAACA------------------GGA--G----------------------------------------------------------------------------------------------CAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTTTCGGT-----T--TATTCCAGAAT..........................................................................................................2311.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCACAG--------GCCGGTG----------TCGCA...................................................................2011.001000001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG--------GCCGGTG----------TCGCAA--------------AGAC---------------------------.....................2011.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATCGTCATTTTTCGGT-----T--T....................................................................................................................2011.001100000
........................................................................................................................................................................................................................................AACAATAACA------------------GGA--G----------------------------------------------------------------------------------------------CAACTACAACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCACAG--------GCCGGTG----------TCGCAA--------------AGA.................................................2611.001100000
droGri2
ACAATC--ATCAT-------------------ATGC------------------------AAC-AGCATCAGCA--------------------------------------------------------------------------------AC---AGCA-------GA--GTCAGCT----------------------------GCAACAGCAGCAGCTGCAACAGC---AACAATT-----------------------T---------------------CAACAGCTG---------------------CAGCAGCAGC----------------------------------------------------------AGCTGCAACAGC-AACA------------------------AATGCAGC-------TGCAATTGCAGCAA-------------------------------------------------C-A---------------------------------GCAGCAGT-----------CGCAGAGC------------AACATGTTGTCGCGTGAGGATATGGAG------------GA--------------------------------TATTGAT--GCATTTCTCAAT-----C--TATCGC----------CCCT--------GCAACCGCTTGCAAGCAACAATA--------------ATAA---------------------------CAACAACAATACCACGG----SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAA-------------------------------------------------C-A---------------------------------GCAGCAGT-----------CGCA...........................................................................................................................................................................................................................................19100.10110
droAna3
ATA-CA--C--------------------------------------------------------------------------------------AAAGCG---------------------------------TTGCAATAACAAC------AAC---AGTAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTCGCACGATCA------------------G---CTG----------CA---------AC------AAC------AATAGCAAC-------AATAACATCAACCGGAAGAGGAATACAACCGGAAATGGAGAAAGGATACT---ACTACAACAAC-A---------------------------------ACAACAAT-----------CATCATCATCA-----------------------------------CTGATATCTGTTAGA--------------------------------TATTCATCGTCGTTTTTCGGT-----T--TATTCCAGAATGCAGCATCA--------GCTGGTG----------TGGCAA--------------AAAC---------------------------CAACAACTATGCCACGGAGGCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAGCATCA--------GCTGGTG----------TGGCA...................................................................2313.003100002
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCA--------GCTGGTG----------TGGCAA--------------....................................................1912.002200000
.........................................................................................................................................................AAC---AGTAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTCGCACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCA--------GCTGGTG----------TGGCAA--------------AAAC---------------------------.....................2311.001000100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCAAC-------AATAACATCAACC........................................................................................................................................................................................................................................................................................................................................................2111.001010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCA--------GCTGGTG----------TGGCA...................................................................1911.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTACAACAAC-A---------------------------------ACAACAAT-----------CATCATC........................................................................................................................................................................................................................................2711.001010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCGGAAATGGAGAAAGG........................................................................................................................................................................................................................................................................................................................2011.001010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAAC-A---------------------------------ACAACAAT-----------CATCATCATCA-----------------------------------CT...............................................................................................................................................................................................2911.001010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC---------------------------CAACAACTATGCCACGGAGGC2311.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCAGCATCA--------GCTGGTG----------TGGCA...................................................................2411.001000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCA--------GCTGGTG----------TGGCAA--------------AAAC---------------------------.....................2411.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G----------TGGCAA--------------AAAC---------------------------CAACAACTATGC.........2311.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCA--------GCTGGTG----------TGGCAA--------------AAAC---------------------------.....................2111.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCA--------GCTGGTG----------TGGCAA--------------AA..................................................2111.001000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACCGGAAATGGAGAAAGGATA.....................................................................................................................................................................................................................................................................................................................2411.001000010
.....................................................................................................................................................................................................................................................................................................................................................................GATCA------------------G---CTG----------CA---------AC------AAC------AATAGCAAC-------.....................................................................................................................................................................................................................................................................................................................................................................2511.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCATCA--------GCTGGTG----------TGGCA...................................................................2211.001000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCA--------GCTGGTG----------TGGCAA--------------A...................................................1911.001000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA--------------AAAC---------------------------CAACAACTATGC.........1811.001010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAACAAC-A---------------------------------ACAACAAT-----------...............................................................................................................................................................................................................................................18130.081010000
droBip1
ACAACA--A----------------CACAA---A--C-----------------------AC---------------------------------AAAGTG---------------------------------TTGCAAC-------------------------------------------------------------------------------------AGCAACAGCAATCGTA------------------CGA--T----------------------------------------------------------------------------------------------CAGCTGCAACA---------A---CCG----------G------------AAGAACAAC------AACAATA----------------------------------TACCAGGAAATGGAAAAAGGATACTGCAACTACAACAAC-A---------------------------------ACATCAATATCAA-----CATCC-------------------------------------ATC-ACTGATAGCGGTTAGA--------------------------------TATTCATCGTCGTTTTTCGGT-----T--TATTCCAGAATGCAGCATCA--------GCTGGTG----------TGGCAA--------------AAAC---------------------------CAACAACTATGCCACGGAGGCSizeHit CountTotal NormTotal
No Reads
droKik1
ACAACA--A----------------CGACTTAATAC------------------------AATCAAAACAA------------------------ATAGCG---------------------------------CAGCCAT-------------------------------------------------------------------------------------AACAAC------AA-----------------------CAT---------------------CGC----------------------------------------------------C------------------A------------------G---CGG----------A------------AAGAACAAC------AACAACAGC-------TA--------------------------------------------------------------------TGGA--------------------------------------------ATGC----------------AACAT------------------TGCA------------GA--------------------------------TATTCATCGTCGTTTTTCGGT-----T--TATTCCAGAATGCAGCACAG--------GCTGGCG----------TTACGA--------------AAAC---------------------------CAACAATTATGCCACGGAAGCSizeHit CountTotal NormTotal
No Reads
droFic1
GCATCACCATCAG---CAGC-------------AGC------------------------AAC-AACAT-----------------------------------------------------------------ATGCAAC---AGCAGCAGCAAC---AAC------------ACCAGCA----------------------------ACAGCAAC---------------------AA-----------------------CATCAGCAACAGCAACAACAT---CAACAACAG---------------------CAGCAGCAGC----------------------------------------------------------ATCAGCAACAGC-AGCA------AC------ATC------AACAACAGC-------AGCAACATCAACAGC--------------------------------------------------AGCAGCAGC--------------------------------------AACAACATCCCAGC---------------ATTGGCATGTTTGATGCCAACGAG------------GT----------------------------------------------CAACGAT-----G--TCATCCAGAATGCTCCCCAA--------ATCGGGG----------TATTCC--------------AGTC---------------------------TAACAG--------------CSizeHit CountTotal NormTotal
No Reads
droEle1
GCAGCA--A----------------CAGT----CGC------------------------ATC-ACCAGCAACAGCAGC------------------AGCAACATGCCGCCTACCAGCAGCACAATATGTATGC--------------------CC---AGCA-------GC---------------------------------------AGC------------AGCAGCAACATCACCAGCAGCAGCATCA-----------G---------------------------------------------CATCACTTC----------------------------------CACCACCA------------------G---CAG----------CA---------AC------A------GCAAC------AG-CAGCAG--------------------------------------------------------------------CAACAGACGCATCATTCGCATCACCACGG-T-----------CAT---AGTCATGACAA---------------------------------------------------------------CAGCAACATGT--------------------------------------------------------C--------GCTGCCC----------TCGCCA--------------ACGG---------------------------CAGCAGCT--GCTGCGGCGGCSizeHit CountTotal NormTotal
No Reads
droRho1
GCAACA--G----------------CAGTA---T--CGAGGAGC-------------CAG-------TCAAATGTTGGCCGCAAGAAACAATCTG---GTG---------------------------------ATGCAAC-------------------------------------------------------------------------------------AACAACAGCAGCAACA-----------------------CCAA---------------CAG---------CAGCAG-------------------------------------------------CAATACCACCA------------------G---CAA----------CA---------AC------A------GCAAC------AG-CAGCAG--------------------------------------------------------------------CAGC--------------------------------------------ACTTGAGCCTG---------------------------------------------------------------CAGCGATTTGTT-----GCCAGTCAAAGCCAGAATTCTGT-----A--CATCTCAATCAGCAGCACAG--------GCTGCAA-------A--TAGCCA--------------AT-A---C-----------------------AACGATCACAGCCACAG----SizeHit CountTotal NormTotal
No Reads
droBia1
TAT-CA--G-CAGCAGCAGCAGCAACAGTA---T--CGAGGAGC-------------CAG-------TCAAATGCTGGCTACCAGGAACAACCTGGTG------------------------------------ATGCAAC---AGC-------------------------------------------------------------------------------AACAGCAGCAGCAATA------------------CCA--CC------------------------AGCAGCAAC-------------------------------------------------------------A------------------GCAGCAG----------C---------ACC------A---------AC------AG-CAGCAG--------------------------------------------------------------------CAAC--------------------------------------------ACTTGAGCCTA---------------------------------------------------------------CAGCGATTTGTT-----GCCAGCCAAAGCCAGAATTCGGT-----G--CATCTCAATCAGCAGCACAG--------GCTGCAA-------A--TAGCCA--------------AT-A---C-----------------------AACGATCACAGCCACAG----SizeHit CountTotal NormTotal
No Reads
droTak1
GCAGCA--A----CTGGAA-------------AAGC------------------------AGA-AGCATCCATACCAGC--------------------------------------------------------------------------AGCAACTGGA-AAAGCACC--AGC-------------------------------------------------AGCAGCAACAACAACT------------------ACA--TCAG---------------CAG-------------------------------------------------------------CAGCAGCAACAACA------------------G---CAG----------CA---------AC------AAC------AGCAGCAGC-------AGCAACATCAGCCTC--------------------------------------------------A------AC------------CGC--CAACTCAG-C-----------AACAGCAACCCA-------------------------------TTCCACCGAA------------ATCACCCATGACCCTCAGCGATATATTCAACAGCCTGGCTGA----------------------------------AGAAGAA--------TCCAATG----------TGGCGC-------------AGAAC---------------------------TACCAGCAAAATCAGGG---ASizeHit CountTotal NormTotal
No Reads
droEug1
GCAGCA--G----------------CATCA---A--C-----------------------AAC-AACAGCAGCAGC-----------------------------------------------------------------------------AGC---AGCA-------TA--TGCAACA----------------------------GCATC------------AGCAGCAGCATCAACAGCAGCAGCATCAACAGCAACA--T-------------------------------------------------------------CAACAGCAA------CAG---------C------A------------------T---CAACA-------------------GCAGCAGCAACAAC---ATC------------------------------------------------------------------------------AGCAGCAGC--------------------------------------AGCAACATCCAAGC---------------ATTGGAATGTTTGATGCCAACGAG------------GT----------------------------------------------TAACGAT-----G--TCATTCAGAATCCTCCTCAA--------ATCGGAG----------TATTCC--------------AATC---------------------------TAACAG--------------CSizeHit CountTotal NormTotal
No Reads
dm3
ACCACC--AACAG-------------------CAGC------------------------AGC-AGCAGCAGCATC--------------------------------------------------------------AAC---AACAACA---GC---AGCA-------GC--AACATCA-------------------------------------------------ACAGCAGCAA-----------------------CATCAG---------------CAG---------CAGCAGCAACACCAACAACAGCAACACCAAC----------------------------------------------------------AGCAGCAACAGC-AACA----------------------------------------------------GA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----G--CAGCTCCAGCAGCAGCAGCA--------GCAGCA----------------------TCAAT-GGAGCGCCAACAACGGCAGCAGCAACCAAAGGAGCAACAATTATGCCA-------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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droSim2
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Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA--------GCAGGTG----------TTTCGA--------------AAAC---------------------------.....................1912.00200000000000200000
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.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCATCGTCGTTTTTCGGT-----........................................................................................................................2011.00101000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA--------GCAGGTG----------TTTCGA--------------AA..................................................1711.00100000010000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCAGAATGCAGCCCAA--------G........................................................................................2011.00100000000000001000
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...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--------------------------------TATTCATCGTCGTTTTTCGGT-----........................................................................................................................2211.00101000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGA--------------AAAC---------------------------CAACAATTATGCCACGG....2511.00100000010000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGA--------------AAAC---------------------------CAACAATTATGCCACG.....2411.00100100000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--TATTCCAGAATGCAGCCCAA--------GCAGGTG----------........................................................................2811.00100000010000000000
droSec2
GTCACT--AAAAA-------------------ATGC------------------------AAT-TGAACAAATCCATTCGATAATGAAAACACTAAAAGCG---------------------------------TTGCCAT-------------------------------------------------------------------------------------AACAACAACAACAACA------------------TCA--T----------------------------------------------------------------------------CAGCGGATGTCGGATACTTA------------------G---CAA----------CA---------AC------AAC------AACAACAGC-------ATCGATATCATCAGG-----------------------------------------------------------------------------------------------------------------------------------------------AATGGGA------------GA--------------------------------TATTCATCGTCGTTTTTCGGT-----T--TATTCCAGAATGCAGCCCAA--------GCAGGTG----------TTTCGA--------------AAAC---------------------------CAACAATTATGCCACGGAGGCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................................................................................................................................................................................................................................................................................................................................................................A------------------G---CAA----------CA---------AC------AAC------AACAACAGC-------ATCGATA..............................................................................................................................................................................................................................................................................................................................................................2811.0010100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATATCATCAGG-----------------------------------------------------------------------------------------------------------------------------------------------AATGGGA------------....................................................................................................................................................................................2111.0010001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGTG----------TTTCGA--------------AAAC---------------------------CA...................1911.0011000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGA--------------AAAC---------------------------CAACAATTATGCCA.......2311.0011000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--------GCAGGTG----------TTTCGA--------------AAAC---------------------------CAACA................2311.0010100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCAGG-----------------------------------------------------------------------------------------------------------------------------------------------AATGGGA------------GA--------------------------------..................................................................................................................................................1811.0010010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--------GCAGGTG----------TTTCGA--------------AAAC---------------------------CA...................2011.0010100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAGG-----------------------------------------------------------------------------------------------------------------------------------------------AATGGGA------------GA--------------------------------TATT..............................................................................................................................................2011.0010100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCAGG-----------------------------------------------------------------------------------------------------------------------------------------------AATGGGA------------GA--------------------------------T.................................................................................................................................................1911.0010001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGA--------------AAAC---------------------------CAACAATTATGCCACGGA...2511.0010010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATCAGG-----------------------------------------------------------------------------------------------------------------------------------------------AATGGGA------------GA--------------------------------TATT..............................................................................................................................................2111.0011000
droYak3
GCAGCA--CAA--CCGAAA-------------TGGC------------------------------CACAAAAGCGACTGAAATTAATAACATCAGCA--------------------------------------------------------AC---AGCA-------GC--AAC-------------------------------------------------AGCAGCAACATCAGTA---------ACATCAGCAACA--A-------------------------------------------------------------------------------------CAGCAACTACA------------------G---CAA----------CAACAGCAACATC------AGCAACAGC----------------AG---------CAA--------------------------------------------------CAACAGCGAC--------------------------------------------GGCTATGACG---------------------------------------ATAACAGTAACG-----------------------------------ACGTCATCATTGCCACAAC----CAAATTTCCAGAGAGC-GCGCAG--------GCAGCAA----------CAACGACAACGGCAGGCGTGGAGC---------------------------CAACAGCGACG--ACGACGGTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACG---------------------------------------ATAACAGTAACG-----------------------------------ACGT...........................................................................................................................................2013.00300000030000
...................................................................................................................................................................................................................................GCAGCAACATCAGTA---------ACATCAGCAACA--A-------------------------------------------------------------------------------------C..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00101000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACAGTAACG-----------------------------------ACGTCATCATT....................................................................................................................................2311.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA----------CAACGACAACGGCAGGCGT.....................................................2211.00101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA----------CAACGACAACGGCAGGCGTGGAGC---------------------------.....................2611.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGACAACGGCAGGCGTGGAGC---------------------------C....................2511.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................AGC----------------AG---------CAA--------------------------------------------------CAACAGCGAC--------------------------------------------GGC............................................................................................................................................................................................................................................2111.00101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG--------GCAGCAA----------CAACGACAACGGCAGG........................................................2611.00101000000000
...............GAAA-------------TGGC------------------------------CACAAAAGCGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010000000
..................A-------------TGGC------------------------------CACAAAAGCGACTGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................G---------CAA--------------------------------------------------CAACAGCGAC--------------------------------------------GGCTA..........................................................................................................................................................................................................................................1911.00101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----------CAACGACAACGGCAGGCGTGGAGC---------------------------.....................2511.00101000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................GCAACATC------AGCAACAGC----------------AG---------CAA--------------------------------------------------.....................................................................................................................................................................................................................................................................................................2270.14100000010000
................................................................................................CA--------------------------------------------------------AC---AGCA-------GC--AAC-------------------------------------------------AGCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100010000000
droEre2
CTG-CA--G-CAGCAGCAGCAGCAGCAGTA---T--CGGGGTGC-------------AAG-------TCATATGCTCGCCGCAAGGAGTAATCTGGTGATG---------------------------------CAGCAAC----------------------------------------------------------------------------------------AGCAGCAG------------CAGCAGCAGCAACA--CCAG---------------CAG---------CTGCAG----------------------------------------------------CAATACCA------------------G---CAG----------C---------ACC------AGCAACAGCAGC------AG-CAGCAG--------------------------------------------------------------------CAGC--------------------------------------------ACTTGAGCCTA---------------------------------------------------------------CAGCGATTTGTT-----GCCAGTCAGGGCCAGAATTCGGT-----G--CATCTCAATCAGCAGCACAG--------GCTGCAA-------A--TAGCCA--------------AT-A---CAACGAT-----------------CACAGCCACAGCCAGAGATCCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...............GCAGCAGCAGCAGTA---T--CGGGGTGC-------------AA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000200
....................AGCAGCAGTA---T--CGGGGTGC-------------AAG-------T..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCTCAATCAGCAGCACAG--------GC.......................................................................................2211.0010000100
..................GCAGCAGCAGTA---T--CGGGGTGC-------------AA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCA--------------AT-A---CAACGAT-----------------CACAGC...............2111.0010000100
................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAGC------AG-CAGCAG--------------------------------------------------------------------CA.............................................................................................................................................................................................................................................................................................22200.1530003000
....................................................................................................G---------------------------------CAGCAAC----------------------------------------------------------------------------------------AGCAGCAG------------CAGCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.1022000000
.........................................................................................................................................................................................................................................GCAG------------CAGCAGCAGCAACA--CCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000100
.........................................................................................................................................................................................................................................................................................................................................................................................................................C------AGCAACAGCAGC------AG-CAGCAG--------------------------------------------------------------------...............................................................................................................................................................................................................................................................................................21200.0510000010
................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAGC------AG-CAGCAG--------------------------------------------------------------------CAGC--------------------------------------------A..............................................................................................................................................................................................................................................25200.0510000100

Generated: 06/08/2015 at 03:09 PM