dpe_743

Name	Class	Family	Strand
(CAG)n	Simple_repeat	Simple_repeat	+

--------------------------########################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TTTCGCTCTCGTTGCAGCCCCACGAGATGGTCTCGAAGAAGCGTTCCAGCGTCGCCGAGCGTGTCCAACGCTCAACGGCAACGGCAGCAGCAGCAGCAGCGGCAGCAGCAGCAACAACATCTGCCCCAGCGTCAAGTGCGTCCGGAACGACGGGGAAGAAGCGGGTGGGGAAACAAGCGAAAGCTCCCACAGAGGAGACGGAGGAAAAGAAGTCAGCGTCAGCATCAGCATCAGCATCGGGCAAGAGGCAG ************************************************(((.((((((((.....))))))..((....))((.((.((.((....)).)).)).)).(((........)))(((.((.((.....((((......)))).....)).)))))((((((.....((....)))))).))..)).)))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M042 female body	M021 embryo	V111 male body	V057 head	V042 embryo
...............................................................................................................................................................................................................................ATCAGCATCAGCATCGGGCAAGA.....	23	0	1	1.00	1	0	1	0	0	0
..........................ATGGTCTCGAAGAAGCGTTCCAGCGT.......................................................................................................................................................................................................	26	0	1	1.00	1	0	0	1	0	0
.................................................................................................................................................................................................................................CAGCATCAGCATCGGGCAAGAGG...	23	0	1	1.00	1	1	0	0	0	0
.......................................................................................................................................TTGCGTCGGGAACGACTGG.................................................................................................	19	3	12	0.42	5	5	0	0	0	0
........................................................................................................................................TGCGTCGGGAACGACTGGC................................................................................................	19	3	14	0.36	5	4	0	0	1	0
.....................................................................................................................................................ACGGGGAATAAGCGGTCG....................................................................................	18	3	20	0.15	3	0	0	0	3	0
...................................................................................GCAGCAGCAGCAGCAGCGGC....................................................................................................................................................	20	0	20	0.05	1	0	0	0	0	1
.....................................................................................................................................................ACGGGGAAGAAGGGGGCG....................................................................................	18	2	20	0.05	1	0	0	0	1	0

AAAGCGAGAGCAACGTCGGGGTGCTCTACCAGAGCTTCTTCGCAAGGTCGCAGCGGCTCGCACAGGTTGCGAGTTGCCGTTGCCGTCGTCGTCGTCGTCGCCGTCGTCGTCGTTGTTGTAGACGGGGTCGCAGTTCACGCAGGCCTTGCTGCCCCTTCTTCGCCCACCCCTTTGTTCGCTTTCGAGGGTGTCTCCTCTGCCTCCTTTTCTTCAGTCGCAGTCGTAGTCGTAGTCGTAGCCCGTTCTCCGTC ************************************************(((.((((((((.....))))))..((....))((.((.((.((....)).)).)).)).(((........)))(((.((.((.....((((......)))).....)).)))))((((((.....((....)))))).))..)).)))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M042 female body	V057 head
........................................................................................................................................ACGCAGCCCTTGCTGACC.................................................................................................	18	2	3	1.00	3	3	0
........................................................................................................................................ACGCAGCCCTTGCTGACCG................................................................................................	19	3	14	0.29	4	4	0
.......................................................................................................................................CACGCAGCCCTTGCTGAC..................................................................................................	18	2	4	0.25	1	1	0
.......................................................................................................................................AACGCAGCCCTTGCTGACC.................................................................................................	19	3	12	0.25	3	3	0
.................................................................................................................TGTAGTAGCCGGGCTCGCA.......................................................................................................................	19	3	11	0.09	1	0	1
..........................................................................TGCCGTTGCCTGCGTCTTCGT............................................................................................................................................................	21	3	20	0.05	1	1	0

Species	Coordinate	ID	Alignment
droPer2	scaffold_13:1131349-1131599 +	dpe_743	TTTCGCTCT-----------------CGT-------------TGCAGC-CCCACGAGATGGTCTCGAAGAAGCGTTCCAGCGTCGCCGAGCGTGTCCAACGCTCAACGGCAACG-------------------------------------------------------GCAGCAGCAGCAGCAGC-------------------GGCAGCAGCAGCAACA------ACATCTGCCCCAGCGTCAAGT-------GC---GTCCGGAA------------CGACGGGGAAGAAGCGGGT---GGGGAA--------ACAAGC---GAAAGCTCCCAC---------------------------------AGA---------GGAGACGGAGGAAAAGAAG---TC--------------------------------------------AGC---------------------G---------------------TCAG---CATC---------------AGCAT-CAGCATCGG-----GCA--AGAGGC------------AG
dp5	XL_group1e:7417117-7417367 -		TTTCGCTCT-----------------CGT-------------TGCAGC-CCCACGAGATGGTCTCGAAGAAGCGTTCCAGCGTCGCCGAGCGTGTCCAACGCTCAACGGCAACG-------------------------------------------------------GCAGCAGCAGCAGCAGC-------------------GGCCGCAGCAGCAACA------ACATCTGCCCCAGCGTCGAGT-------GC---GTCCGGAA------------CGACGGGGAAGAAGCGGGT---GGGGAA--------ACAAGC---GAAAGCTCCCAC---------------------------------AGA---------GGAGACGGAGGAAAAGAAG---TC--------------------------------------------CGC---------------------G---------------------TCAG---CATC---------------AGCAT-CAGCATCGG-----GCA--AGAGGC------------AG
droWil2	scf2_1100000004590:934423-934671 -		TTTTGCTGT-----------------TTC------ATCAACGGTTAGG-CCATCGATATGGTCTCGAAGAAACGTAACACGGTGGCGGAGCGTGTGCAACGCTCAACTGTAGCT-------------------------------------------------------GCTTCCATGCGTCCA-------------------ACAACGT---CATCATCA------ACA---------------TCT-------GG---ATCGTCGT------------CTACGGGTAAAAAGAGAGC---CGGAAA--------GCAATC---AAAAACAACAGAC---------------------------GA-GACGACGACGACGACGACGGAGATGGATAAAAA---GG----------------------------------------------C------------------------A-TCAACA--ACAACAACA------------------------------------------TCAAGCA--AGACGA------------CG
droVir3	scaffold_12970:6991122-6991400 +		TGCAGATGTCCGCCGGCGCTCAATTGCA--------------GATGGC-CCCACAG-------------------ACCACATCGACCCTAAGTCATCATCATCCGAGCA--G-TCAAGCAGCACAGCAGCAACA-----------------------------------GCAGCAACAACAGCAGC-------------------AGCCG---GCACAGCA---GCAACATTTTGCAAATCATC-------------------------------------ACAGTACG-CAAGCGCAGCAGCAACAGCAATTGCTGCCA-C---AGCAACTCACGC---------------------------------AGC---------AGCAACATTTGCAAACGCA---CAC-GT---TGCATT----------------TGCAACA--GCAGGCGGC---------------------A---------------------GCAG---CAGC---------------AGCAG-CAGCAG--------CGG-CGGCGGC------------GG
droMoj3	scaffold_6473:6931084-6931316 +		CGCTCTT--------------------GCTGCTGACTCACTAGTTGGA-CAGCAGCTACAGCAGCAG---------------------------------------CAGCAGCA-----------GCAGCAACA---------GCAGCA--------------------GCAGCAACAGCAGCAGC-AGCAGCAGCAGCAACAACAGCAGCAGCAACAACA------GCAGCAGCAGCAACAGCAGCA-------GC---A--------------------------------GCAGCA---GCAGC-------------------------------------------------------------AGCAG--------------C-------------------------AGCAGC----------------AGCAACA--GCAG-CAGCAGCAGCGGCAGCAGCAGCAGCA---------------------GCGG---CAGC---------------AGCAG-CAGCAGCTT-----GCA--AA----------------AG
droGri2	scaffold_14853:6551908-6552176 -		TCTCTTGGC-----------------AG---------CTG--GGCAACGCACAAAACATGGGGCCGAAGAAGCGTGCCAGCGTCGCTGAGCGACTCCAGCGCTCCGCAACAGCT-------------------------------------------------------GCTCCAACGACGACGACG----------------ACGACGA---CGTCAGCA------TCG---------GCGGCGATG-------GTCTCGTCCGGAGCGCCGACGACGTCAACGGCTAAGAAACGCAGCGGCGGCAA--------GCAG-C---AAAAGCTAAC-----------------------------------GGA---------TGAGCCGGATGAGAAGAAG---TG-----------------------------------------------------------------------CGCCA---AATCCGAGGCA------------------ATAACAACAACAAC---------AGCAGCAA--CAACAA------------CA
droAna3	scaffold_13337:15469091-15469346 +		GCCGCCGCT-------------------------------------------------------------------CC-------------AGGTCCG----------GCAGCA-----------------GCAGCTGCAGCAGCGGCGGCCGCCGCCCAGCAGCAGCACCAGGCGCAGCATCA-------------------GCAGCAGCAGCAGCAACA------ACAGCAGCAGCAGCAGCAGGTGGGCGGTGC---GCCCTCCG------------CCGCTGACAGTCT------------------------------------GTCGCTGGC---------------------------GGTGGCGG-----------CGGCGGCTGCCAAACAGGCGTC-TGAGCCAGTGACCCAATTGAAGTCGGCCGGCGATGGTGCAGGCGCC---------------------------------------------AGCAACAGC------------------------------AACAATAA--CAACAC------------AG
droBip1	scf7180000396735:1248049-1248253 +		CTGGCCGCT-------------------------------------GC-CCAGCAGCATGCCCTCAACCAGGCCCAGCAGCAACA--------------CGCTCATCACCAGGC-------------------------------------------------------CC----------------AGCAGCAGCAGCAACAGCAGCAGCAGCAACAACA------ACAGCAGCAGCAGCAGCACCT-------GC---ATGCCCAG------------CA-------GCTGCTGGCC---CAGAG-----------------------------------------------------------C--------------------C-------------------------AGTTGC----------------AGCAACA--GCAG-CAGC---------------------A---------------------GCAC---CACC---------------AGCAA-CAGCAGCAG-----GCAGCAGCGGC------------GG
droKik1	scf7180000302592:1878790-1879044 -		CTTCCTCCT-----------------CGT-------GCAC--CACAGC-CCCTTGGAATGGTCTCGAAGAAGCGTGCCAGCGTCGCGGAGCGCGTACAGCGCTCAACGGCGACC-------------------------------------------------------GCGGCGGCAGCGGCAGCA----------------GCAG---------CGGCA------GCG---------------GCT-------GC---GTCGATAG------------TGCCGGGGAAAAAGCGGGC---AGGAAA--------GCTGAC---GAAGGCTTCCGGT---------------------------GCCGGTGA---------CGAAGCGGAGGACAAGAAA---TC-----------------------------------------------------------------------CTCCGGCAAGACAGAGGTAACAG---CAAC---------------AGCTG-CCACCTCAA-----GCA--AGAAGC------------CA
droFic1	scf7180000453829:241428-241673 +		TTTCGCTCC-----------------CCC-------------TCCAGC-ATTTCGAAATGGTCTCGAAGAAGCGTTCCAATGCCGCCGAGCGTGTGCAACGCTCAACGGCAACT-------------------------------------------------------GCGGCAGCGGCGGCGGCA----------------G------------CAGCA------GCG---------------GCC-------GC---ATCCACAA------------CGCAGGGCAAGAAGCGCCC---CGGCAA--------ACAGAC---GAAATCCTCCTCCA---------------------ACGCTGGCGGCGA---------AGAAGCGGAGGACAAGAAGAAGTT--------------------------------------GGATGCCAC---------------------------------------------AGCAACAAC------------AACAACAA-CAACAT----------C--AGCAGC------------TG
droEle1	scf7180000491272:847192-847438 +		TTTTGTCTT-----------------TCTC-----GCCATCATCCAGC-CCTTTAAAATGGTCTCGAAGAAGCGTTCCAATGCCGCCGAACGTGTCCAGCGCTCGACGGCGACT-------------------------------------------------------GCGGCAGCGGCGGCAGCA----------------GCAGCGG---CCGCTGCA------G------------------TG-------GC---GTCCTCAA------------CGCAGGGCAAGAAACGGCC---CGGGAA--------GCAGGC---GAAAACCTCCAGC------------------------GCTGCCGGCGA---------TGAAGCAGAGGAGAAAAAG---TC-----------------------------------------------------------------------AAGCAGCAAGTCGGATTCG------------------------------------------GCAGCCA--AGAAGC------------CA
droRho1	scf7180000779273:85731-85985 -		TTTCGTTTTCT---------------CC--------------CCCAGC-CCTTTATAATGGTCTCGAAGAAGCGTTCCAATGCCGCTGAACGCGTCCAGCGCTCGACGGCGACT-------------------------------------------------------GCGGCAGCGGCGGCAGCA----------------GCAGCGG---CCGCAGCA------GCA---------------TCG-------GC---CTCCTCGA------------CGCAAGGCAAGAAGCGACC---CGGGAA--------GCAGGC---GAAAACCTCCAGC---------------------------GCCGGCGA---------TGAAGCAGAGGACAAAAAA---TC-----------------------------------------------------------------------AACCAGCAAGTCGGATTCA------------------AGCGCAGCGGGGTC---------TGCAGCCA--AGAAGC------------CA
droBia1	scf7180000302075:172604-172842 +		TCCTCCCCC-----------------AGC-------------CCCAGC-CCTTTGCAATGGTCTCCAAGAAGCGTTCCAATGCCGCCGAGCGTGTCCAGCGCTCGACGGCGACT-------------------------------------------------------GCGGCGGCGGCAGCAGC-------------------GGCCG------CTGCA------GCA---------------GCG-------GC---GTCCACGA------------CGCAGGGCAAGAAGCGGCC---CGGGAA--------GCAGACGACGAAAGCCTCCGGC---------------------------GGCGGCGA---------CGAGGCGGAGGACAAGAAG---TC-----------------------------------------------------------------------CTCCAGCAAGACGGACTCG------------------AG---------------------TGCAGCCA--AGAAGC------------CG
droTak1	scf7180000415248:495393-495645 -		TTCCATC-----------------------------------TCCAGC-CCTCTGAAATGGTCTCGAAGAAGCGCTCCAATGCCGCTGACCGAGTGCAGCGCTCGACGGCGACT-------------------------------------------------------GCGGCAGCGGCGGCGGCA----------------GCAGCGG---CGGCAGCAGCAGCAGCG---------------GCG-------GC---CTCCGCAA------------GCCAGGGCAAGAAGCGGCC---CGGGAA--------GCAGAC---GAAAGCCTCCAGC---------------------------GGCGGCGA---------TGAGGCGGAGGACAGCAAGAAGTC--------------------------------------------------------------------GTCGGCCAGCAAGACAG---------------CAGATTCCAG---------------------TGCAGCCA--AGAAGCC-----------AG
droEug1	scf7180000409230:581331-581614 -		TTTCTCTCT-----------------TATC-----GCCTT--CTCAGC-CCCTTGAAATGGTCTCGAAGAAGCGTTCCAATGCCGCTGAGCGTGTCCAACGCTCGACGGCAACT-------------------------------------------------------GCAGCGGCGGCTGCAGC-------------------GGCTGCCGCAGCAGCA------GCG---------------TCA-------TC---GTCTACAG------------CGCAGGGCAAGAAACGGCC---CGGAAA--------ACAGAC---GAAAACCTCCAGCGGCAGCGGCAGCGGTGGCGGCGGCGGCGGCGGCGA---------CGAAGCAGAGGATAAAAAG---TC-----------------------------------------------------------------------AGCCAGCAAAACAGATTCG------------------------------------------GCAGCTA--AGAAACCAGGCAAGGATCCC
dm3	chrX:19762418-19762658 +		CCTCTTTCC-----------------CG--------------CACAGC-CCCACGAAATGGTCTCGAAGAAGCGCTCCAATGCCGCCGAGCGTGTCCAGCGTTCGACGGCGACT-------------------------------------------------------GCGGCAGCGGCGGCAGCA----------------GCAGCTG---CCGCAGCA------GCG---------------ACG-------GC---GTCCTCGA------------CGCAGGGCAAGAAGCGGCC---CGGGAA--------ACAGAC---GAAGGCCTCCGGT------------------------GGCGGCGGCGA---------CGAGGCGGATGACAAGAAG---TC-----------------------------------------------------------------------AGCCAGCAAAACAGATTCG------------------------------------------GCGGCCA--AGAAGC------------CG
droSim2	x:18641502-18641739 +		CCTCTTTCC-----------------CG--------------CACAGC-CCCACGAAATGGTCTCGAAGAAGCGCTCCAATGCCGCCGAGCGTGTTCAGCGTTCGACGGCGACT-------------------------------------------------------GCGGCAGCGGCGGCAGCA----------------GCAGCTG---CCGCAGCA------GCG---------------ACA-------GC---GTCCTCGA------------CGCAGGGCAAGAAGAGGCC---CGGGAA--------ACAGAC---GAAGGGCTCCGGC---------------------------GGCTGCGA---------CGAGGCGGATGACAAGAAG---TC-----------------------------------------------------------------------AGCCAGCAAGACAGATTCG------------------------------------------GCGGCCA--AGAAGC------------CG
droSec2	scaffold_8:2026072-2026309 +		CCTCTTTCC-----------------CG--------------CACAGC-CCCACGAAATGGTCTCGAAGAAGCGCTCCAATGCCGCCGAGCGTGTTCAGCGTTCGACGGCGACT-------------------------------------------------------GCGGCAGCTGCGGCAGCA----------------GCAGCTG---CCGCAGCA------GCG---------------ACA-------GC---GTCCTCGA------------CGCAGGGCAAGAAGCGGCC---CGGGAA--------ACAGAC---GAAGGCATCCGGC---------------------------GGCGGCGA---------CGAGGCGGATGAGAAGAAG---TC-----------------------------------------------------------------------AGCCAGCAAGACAGATTCG------------------------------------------GCGGCCA--AGAAGC------------CG
droYak3	X:11610558-11610795 -		CCTCTTTCT-----------------CG--------------CACAGC-CCCTTAAAATGGTCTCGAAGAAGCGCTCCAATGCCGCCGACCGTGTCCAGCGTTCGACTGCGACT-------------------------------------------------------GCGGCAGCGGCGGCGGCA----------------GCAGCTG---CCGCAGCA------GCG---------------ACG-------GT---GTCCACGA------------CGCAGGGCAAGAAGCGGCC---CGGGAA--------ACAGAC---GAAGGCCTCCAGC---------------------------GGCGGCGA---------CGAGGCGGACGACAAGAAG---TC-----------------------------------------------------------------------TGCCAGCAAGACAGACACG------------------------------------------GCGGCCA--AGAAGC------------CG
droEre2	scaffold_4690:9966912-9967142 +		TTTCCCG-----------------------------------CACAGC-CCATTGAAATGGTCTCGAAGAAGCGCTCCAATGCTGCCGAGCGTGTCCAGCGTTCGACGGCGACT-------------------------------------------------------GCGGCAGCGGCGGCAGC-------------------AGCTG---CCGCAGCA------GCG---------------ACG-------GC---GTCCACGA------------CCCAGGGCAAGAAGCGGCC---CGGGAA--------ACAGAC---GAAGGCCTCCAGC---------------------------GGCGGCGA---------CGAGGCGGAGGACAAGAAG---TC-----------------------------------------------------------------------CGCCAGCAAGACAGATTCG------------------------------------------GCGGCCA--AGAAGC------------CG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droPer2

TTTCGCTCT-----------------CGT-------------TGCAGC-CCCACGAGATGGTCTCGAAGAAGCGTTCCAGCGTCGCCGAGCGTGTCCAACGCTCAACGGCAACG-------------------------------------------------------GCAGCAGCAGCAGCAGC-------------------GGCAGCAGCAGCAACA------ACATCTGCCCCAGCGTCAAGT-------GC---GTCCGGAA------------CGACGGGGAAGAAGCGGGT---GGGGAA--------ACAAGC---GAAAGCTCCCAC---------------------------------AGA---------GGAGACGGAGGAAAAGAAG---TC--------------------------------------------AGC---------------------G---------------------TCAG---CATC---------------AGCAT-CAGCATCGG-----GCA--AGAGGC------------AG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATC---------------AGCAT-CAGCATCGG-----GCA--AGA.................	23	1	1.00	1	1	0	0	0	0	0
.........................................................ATGGTCTCGAAGAAGCGTTCCAGCGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---------------AGCAT-CAGCATCGG-----GCA--AGAGG...............	23	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................GCAGCAGCAGCAGCAGC-------------------GGC.......................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0

dp5

TTTCGCTCT-----------------CGT-------------TGCAGC-CCCACGAGATGGTCTCGAAGAAGCGTTCCAGCGTCGCCGAGCGTGTCCAACGCTCAACGGCAACG-------------------------------------------------------GCAGCAGCAGCAGCAGC-------------------GGCCGCAGCAGCAACA------ACATCTGCCCCAGCGTCGAGT-------GC---GTCCGGAA------------CGACGGGGAAGAAGCGGGT---GGGGAA--------ACAAGC---GAAAGCTCCCAC---------------------------------AGA---------GGAGACGGAGGAAAAGAAG---TC--------------------------------------------CGC---------------------G---------------------TCAG---CATC---------------AGCAT-CAGCATCGG-----GCA--AGAGGC------------AG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
............................................................................................................................................................................................................................................................................................................................................CCCAC---------------------------------AGA---------GGAGACGGAG...............................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................CTCGAAGAAGCGTTCCAGCGTCGCCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-CAGCATCGG-----GCA--AGAGGC------------A.	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0
...........................................................................................................................................................................AGCAGCAGCAGCAGC-------------------GGCCGCAGC.................................................................................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0

droWil2

TTTTGCTGT-----------------TTC------ATCAACGGTTAGG-CCATCGATATGGTCTCGAAGAAACGTAACACGGTGGCGGAGCGTGTGCAACGCTCAACTGTAGCT-------------------------------------------------------GCTTCCATGCGTCCA-------------------ACAACGT---CATCATCA------ACA---------------TCT-------GG---ATCGTCGT------------CTACGGGTAAAAAGAGAGC---CGGAAA--------GCAATC---AAAAACAACAGAC---------------------------GA-GACGACGACGACGACGACGGAGATGGATAAAAA---GG----------------------------------------------C------------------------A-TCAACA--ACAACAACA------------------------------------------TCAAGCA--AGACGA------------CG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.....................................................................................................................................................................................................................................................................................................................................AAAAACAACAGAC---------------------------GA-GACGAC.................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................AAAAACAACAGAC---------------------------GA-GACGACGA...............................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................AGAGAGC---CGGAAA--------GCAATC---..................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1
................................................................................................................................................................................................................................................................................................AAAAAGAGAGC---CGGAAA--------GCAAT......................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
..........................................................................TAACACGGTGGCGGAGCGTGTGCAACGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0

droVir3

TGCAGATGTCCGCCGGCGCTCAATTGCA--------------GATGGC-CCCACAG-------------------ACCACATCGACCCTAAGTCATCATCATCCGAGCA--G-TCAAGCAGCACAGCAGCAACA-----------------------------------GCAGCAACAACAGCAGC-------------------AGCCG---GCACAGCA---GCAACATTTTGCAAATCATC-------------------------------------ACAGTACG-CAAGCGCAGCAGCAACAGCAATTGCTGCCA-C---AGCAACTCACGC---------------------------------AGC---------AGCAACATTTGCAAACGCA---CAC-GT---TGCATT----------------TGCAACA--GCAGGCGGC---------------------A---------------------GCAG---CAGC---------------AGCAG-CAGCAG--------CGG-CGGCGGC------------GG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
............CCGGCGCTCAATTGCA--------------GATGGC-CCCAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3
..........................................GATGGC-CCCACAG-------------------ACCACATCGACC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................AATCATC-------------------------------------ACAGTACG-CAAGCGCAGC...........................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................CATCATCATCCGAGCA--G-TCAAGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................TACG-CAAGCGCAGCAGCAACA....................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................TT----------------TGCAACA--GCAGGCGGC---------------------A---------------------GCAG---C...............................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................G-TCAAGCAGCACAGCAGCAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................TGCATT----------------TGCAACA--GCAGGC.....................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................GCAATTGCTGCCA-C---AGCAACTCACGC---------------------------------AA...................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................AATCATC-------------------------------------ACAGTACG-CAAGCGCAG............................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................C-------------------------------------ACAGTACG-CAAGCGCAGCAGC........................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................AACATTTGCAAACGCA---CAC-GT---..........................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................AACAGCAATTGCTGCCA-C---AGCAACT...........................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................AACAACAGCAGC-------------------AGCCG---GCACA.............................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................CAG-------------------ACCACATCGACCCTAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................AGCA---GCAACATTTTGCAAA........................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................GCATT----------------TGCAACA--GCAGGCGGC---------------------.............................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................ATTTGCAAACGCA---CAC-GT---TGC.......................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................CACAG-------------------ACCACATCGACCCTAAGTCATCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................TGCAAATCATC-------------------------------------ACAGTACG-CAAGCGCA.............................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................ATCATC-------------------------------------ACAGTACG-CAAGCG...............................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....GATGTCCGCCGGCGCTCAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................CATT----------------TGCAACA--GCAGGCGGC---------------------.............................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................CATC-------------------------------------ACAGTACG-CAAGCGCAGC...........................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................CGC---------------------------------AGC---------AGCAACATTTGC.............................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGCGGC---------------------A---------------------GCAG---CAGC---------------AGCA.........................................	22	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---CAGC---------------AGCAG-CAGCAG--------CGG-CGGC.................	23	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................A-----------------------------------GCAGCAACAACAGCAGC-------------------A.........................................................................................................................................................................................................................................................................................................................................................................	19	20	0.15	3	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAG-CAGCAG--------CGG-CGGCGGC------------G.	21	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAG-CAGCAG--------CGG-CGGC.................	18	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAG---CAGC---------------AGCAG-CAGCAG--------CGG-C....................	23	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................GCACAGCAGCAACA-----------------------------------GCAGCA........................................................................................................................................................................................................................................................................................................................................................................................................	20	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC---------------AGCAG-CAGCAG--------CGG-CGG..................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---------------AGCAG-CAGCAG--------CGG-CGGCG................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC---------------AGCAG-CAGCAG--------CGG-CGGCGGC------------..	23	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC---------------AGCAG-CAGCAG--------CGG-CGGC.................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..................................................................................................................................AACA-----------------------------------GCAGCAACAACAGCAGC-------------------A.........................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................ACA-----------------------------------GCAGCAACAACAGCAGC-------------------A.........................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC---------------AGCAG-CAGCAG--------CGG-CGGCGGC------------..	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
....................................................................................................................................CA-----------------------------------GCAGCAACAACAGCAGC-------------------AG........................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................AACA-----------------------------------GCAGCAACAACAGCAGC-------------------AGC.......................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGGC---------------------A---------------------GCAG---CAGC---------------AGCAG-C......................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC---------------AGCAG-CAGCAG--------CGG-CGG..................	20	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAG-CAGCAG--------CGG-CGGCGGC------------..	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAG---CAGC---------------AGCAG-CAGCAG--------CGG-CGGC.................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................CA-----------------------------------GCAGCAACAACAGCAGC-------------------A.........................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG-CAGCAG--------CGG-CGGCGG...............	18	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---CAGC---------------AGCAG-CAGCAG--------CGG-CG...................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................AACA-----------------------------------GCAGCAACAACAGCA...............................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---CAGC---------------AGCAG-CAGCAG--------CGG-CG...................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................CAGCAGCAACA-----------------------------------GCAGCAACA.....................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................CAGCAACA-----------------------------------GCAGCAACAACAG.................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CGCTCTT--------------------GCTGCTGACTCACTAGTTGGA-CAGCAGCTACAGCAGCAG---------------------------------------CAGCAGCA-----------GCAGCAACA---------GCAGCA--------------------GCAGCAACAGCAGCAGC-AGCAGCAGCAGCAACAACAGCAGCAGCAACAACA------GCAGCAGCAGCAACAGCAGCA-------GC---A--------------------------------GCAGCA---GCAGC-------------------------------------------------------------AGCAG--------------C-------------------------AGCAGC----------------AGCAACA--GCAG-CAGCAGCAGCGGCAGCAGCAGCAGCA---------------------GCGG---CAGC---------------AGCAG-CAGCAGCTT-----GCA--AA----------------AG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.................................................................................................................................................................................................................GCAGCAACAACA------GCAGCAGCAGC.........................................................................................................................................................................................................................................................................................................................................	23	20	0.15	3	0	0	0	0	3	0
...............................................................................................................................................................................................................................................................GC---A--------------------------------GCAGCA---GCAGC-------------------------------------------------------------AGCAG--------------C-------------------------AGCA......................................................................................................................................................	24	20	0.15	3	3	0	0	0	0	0
......................................................................................................................................................................................................................AACAACA------GCAGCAGCAGCA........................................................................................................................................................................................................................................................................................................................................	19	20	0.15	3	3	0	0	0	0	0
...................................................GCAGCTACAGCAGCAG---------------------------------------CAGCAGCA-----------GC........................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	9	0.11	1	1	0	0	0	0	0
........................................................................................................................................................................................................ACAACAGCAGCAGCAACAACA------....................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	2	0	0	0	0	0
................................................................................................................................................................................................................AGCAGCAACAACA------GCAGCAGC............................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	2	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA--GCAG-CAGCAGCAGCGG..........................................................................................................	19	20	0.10	2	0	0	0	2	0	0
......................................................................................................................................................................................................................................GCAGCAGCAACAGCAGCA-------GC---A--------------------------------GC................................................................................................................................................................................................................................................................................	23	20	0.10	2	2	0	0	0	0	0
......................................................................................................................................................................................................CAACAACAGCAGCAGCAACAAC...........................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	2	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................AGC-------------------------------------------------------------AGCAG--------------C-------------------------AGCAGC----------------AGCAACA--GC.........................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................C-------------------------AGCAGC----------------AGCAACA--GCAG-CAGCAGCA..............................................................................................................	26	20	0.05	1	1	0	0	0	0	0
.......................................................CTACAGCAGCAG---------------------------------------CAGCAGCA-----------GCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
......................................................................................................................................................................................................CAACAACAGCAGCAGCAAC..............................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0
.............................................................................................................................................................................CAACAGCAGCAGC-AGCAGCAGCAG.................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................CA--GCAG-CAGCAGCAGCGGCAGC......................................................................................................	22	20	0.05	1	1	0	0	0	0	0
.............................................................................................................................................................................................................AGCAGCAGCAACAACA------GCAGCAGC............................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
............................................................................................................GCAGCA-----------GCAGCAACA---------GCAGCA--------------------GCA...........................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGCAGCAGCAGCA---------------------GCGG---C...............................................................	21	20	0.05	1	1	0	0	0	0	0
........................................................................................................................................................................................................................CAACA------GCAGCAGCAGCAACAGC...................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................CAGCAGCAGCAACAGCAGCA-------GC---...................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA--GCAG-CAGCAGCAGCGGC.........................................................................................................	21	20	0.05	1	0	0	0	0	0	1
............................................................................................................................................................................GCAACAGCAGCAGC-AGCAGCAGCA..................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
........................................................TACAGCAGCAG---------------------------------------CAGCAGCA-----------GCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
.............................................................................................................................................................................................................AGCAGCAGCAACAACA------GCAGC...............................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
............................................................................................................................................................................................................CAGCAGCAGCAACAACA------GCAGC...............................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA--GCAG-CAGCAGCAGCG...........................................................................................................	19	20	0.05	1	0	0	0	0	0	1
................................................................................................................................................................................................................................................................................................................AGC-------------------------------------------------------------AGCAG--------------C-------------------------AGCAGC----------------AGCAACA--G..........................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
...................................................................................................................................................................................................CAGCAACAACAGCAGCAGC.................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................CAACAGCAGCA-------GC---A--------------------------------GCAGCA---GCAG.....................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCA---------------------GCGG---CAG.............................................................	20	20	0.05	1	1	0	0	0	0	0
.....................................................................................................................................................................................GCAGC-AGCAGCAGCAGCAACAACAGCA......................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	1	0
...........................................................................................................................................................................................................ACAGCAGCAGCAACAACA------GCAGCA..............................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGCAGCAGCAGCAGCA---------------------GCGG---C...............................................................	23	20	0.05	1	0	0	0	0	1	0
.......................................................................................................................................................................................................................ACAACA------GCAGCAGCAGCAACA.....................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0	0
........................................................................................................................................................................................................................................AGCAGCAACAGCAGCA-------GC---A--------------------------------GCA...............................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0

droGri2

TCTCTTGGC-----------------AG---------CTG--GGCAACGCACAAAACATGGGGCCGAAGAAGCGTGCCAGCGTCGCTGAGCGACTCCAGCGCTCCGCAACAGCT-------------------------------------------------------GCTCCAACGACGACGACG----------------ACGACGA---CGTCAGCA------TCG---------GCGGCGATG-------GTCTCGTCCGGAGCGCCGACGACGTCAACGGCTAAGAAACGCAGCGGCGGCAA--------GCAG-C---AAAAGCTAAC-----------------------------------GGA---------TGAGCCGGATGAGAAGAAG---TG-----------------------------------------------------------------------CGCCA---AATCCGAGGCA------------------ATAACAACAACAAC---------AGCAGCAA--CAACAA------------CA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
...............................................................................................................................................................................................................................................................................................................................G-C---AAAAGCTAAC-----------------------------------GGA---------TGAGCCG..................................................................................................................................................................................	22	1	1.00	1	1	0
..................................................................................................................................................................................................................................................................................................GAAACGCAGCGGCGGCAA--------GCAG-C---A.................................................................................................................................................................................................................................................	24	1	1.00	1	1	0
......................................................................................................................................................................................................................................................................CCGGAGCGCCGACGACGTCAACG..........................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0

droAna3

GCCGCCGCT-------------------------------------------------------------------CC-------------AGGTCCG----------GCAGCA-----------------GCAGCTGCAGCAGCGGCGGCCGCCGCCCAGCAGCAGCACCAGGCGCAGCATCA-------------------GCAGCAGCAGCAGCAACA------ACAGCAGCAGCAGCAGCAGGTGGGCGGTGC---GCCCTCCG------------CCGCTGACAGTCT------------------------------------GTCGCTGGC---------------------------GGTGGCGG-----------CGGCGGCTGCCAAACAGGCGTC-TGAGCCAGTGACCCAATTGAAGTCGGCCGGCGATGGTGCAGGCGCC---------------------------------------------AGCAACAGC------------------------------AACAATAA--CAACAC------------AG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..............................................................................................................................................................................................................................................................................................ACAGTCT------------------------------------GTCGCTGGC---------------------------GGT.......................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
..CGCCGCT-------------------------------------------------------------------CC-------------AGGTCCG----------GCAGCA-----------------G...................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................GCAGCAGCAGCAGGTGGGCGGTGC---...................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
....CCGCT-------------------------------------------------------------------CC-------------AGGTCCG----------GCAGCA-----------------GCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................GTGACCCAATTGAAGTCGGCC....................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................AGCAGCAGCAGGTGGGCGGTGC---GCCCT..............................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
............................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGCCGGCGATGGTGC.........................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................AACA------ACAGCAGCAGCAGCA.....................................................................................................................................................................................................................................................................................................................................	19	20	0.20	4	0	0	0	0	0	4
...........................................................................................................................................................................................................................CA------ACAGCAGCAGCAGCAGC...................................................................................................................................................................................................................................................................................................................................	19	20	0.15	3	0	3	0	0	0	0
....................................................................................................................................................................................ATCA-------------------GCAGCAGCAGCAGCAACA------AC..................................................................................................................................................................................................................................................................................................................................................	24	9	0.11	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................ACA------ACAGCAGCAGCAGCAGC...................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	2	0	0	0	0
.......................................................................................................................................................................................................................GCAACA------ACAGCAGCAGCAGCAGC...................................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	2	0	0	0	0
....................................................................................................................................................................................ATCA-------------------GCAGCAGCAGCAGCAAC...........................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	1	0	0	0	1
..............................................................................................................................................................................................................................................................................................................................................TGGC---------------------------GGTGGCGG-----------CGGCGGC................................................................................................................................................................................	19	10	0.10	1	1	0	0	0	0	0
................................................................................................................................................................................................................AGCAGCAGCAACA------ACAGCAGCAGCA........................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	1
..............................................................................................................................................................................................................GCAGCAGCAGCAACA------ACAGCAGC............................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................CAGCAACA------ACAGCAGCAGCAGCAGCA..................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0
...........................................................................................................................................................................................................GCAGCAGCAGCAGCAACA------ACAGCAGC............................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0
.............................................................................................................................................................................................................AGCAGCAGCAGCAACA------ACAGCAGCA...........................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	1
................................................................................................................................................................................................................AGCAGCAGCAACA------ACAGCAGC............................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................AGCAGCAGCAGCAGCAGG................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................GCAACA------ACAGCAGCAGCAGC......................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0
........................................................................................................................................................................................................................CAACA------ACAGCAGCAGCAGCAGC...................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
.............................................................................................................................................................................................................AGCAGCAGCAGCAACA------ACAGC...............................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1
......................................................................................................................................................................................................................AGCAACA------ACAGCAGCAGCAGCAGCA..................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0
....................................................................................................................................................................................................................GCAGCAACA------ACAGCAGCAGCAGCA.....................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
.................................................................................................................................................................................AGCATCA-------------------GCAGCAGCAGCA................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0	0
......................................................................................................................................................................................CA-------------------GCAGCAGCAGCAGCAACA------ACAGC...............................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0
......................................................................................................................................................................................................................AGCAACA------ACAGCAGCAGCAGCAGC...................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0
.......................................................................................................................................................................................A-------------------GCAGCAGCAGCAGCAACA------ACAGCAGC............................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................GGC---------------------------GGTGGCGG-----------CGGCGGC................................................................................................................................................................................	18	20	0.05	1	1	0	0	0	0	0
...........................................................................................................................................................................................................GCAGCAGCAGCAGCAACA------ACAGC...............................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0

droBip1

CTGGCCGCT-------------------------------------GC-CCAGCAGCATGCCCTCAACCAGGCCCAGCAGCAACA--------------CGCTCATCACCAGGC-------------------------------------------------------CC----------------AGCAGCAGCAGCAACAGCAGCAGCAGCAACAACA------ACAGCAGCAGCAGCAGCACCT-------GC---ATGCCCAG------------CA-------GCTGCTGGCC---CAGAG-----------------------------------------------------------C--------------------C-------------------------AGTTGC----------------AGCAACA--GCAG-CAGC---------------------A---------------------GCAC---CACC---------------AGCAA-CAGCAGCAG-----GCAGCAGCGGC------------GG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CTTCCTCCT-----------------CGT-------GCAC--CACAGC-CCCTTGGAATGGTCTCGAAGAAGCGTGCCAGCGTCGCGGAGCGCGTACAGCGCTCAACGGCGACC-------------------------------------------------------GCGGCGGCAGCGGCAGCA----------------GCAG---------CGGCA------GCG---------------GCT-------GC---GTCGATAG------------TGCCGGGGAAAAAGCGGGC---AGGAAA--------GCTGAC---GAAGGCTTCCGGT---------------------------GCCGGTGA---------CGAAGCGGAGGACAAGAAA---TC-----------------------------------------------------------------------CTCCGGCAAGACAGAGGTAACAG---CAAC---------------AGCTG-CCACCTCAA-----GCA--AGAAGC------------CA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TTTCGCTCC-----------------CCC-------------TCCAGC-ATTTCGAAATGGTCTCGAAGAAGCGTTCCAATGCCGCCGAGCGTGTGCAACGCTCAACGGCAACT-------------------------------------------------------GCGGCAGCGGCGGCGGCA----------------G------------CAGCA------GCG---------------GCC-------GC---ATCCACAA------------CGCAGGGCAAGAAGCGCCC---CGGCAA--------ACAGAC---GAAATCCTCCTCCA---------------------ACGCTGGCGGCGA---------AGAAGCGGAGGACAAGAAGAAGTT--------------------------------------GGATGCCAC---------------------------------------------AGCAACAAC------------AACAACAA-CAACAT----------C--AGCAGC------------TG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TTTTGTCTT-----------------TCTC-----GCCATCATCCAGC-CCTTTAAAATGGTCTCGAAGAAGCGTTCCAATGCCGCCGAACGTGTCCAGCGCTCGACGGCGACT-------------------------------------------------------GCGGCAGCGGCGGCAGCA----------------GCAGCGG---CCGCTGCA------G------------------TG-------GC---GTCCTCAA------------CGCAGGGCAAGAAACGGCC---CGGGAA--------GCAGGC---GAAAACCTCCAGC------------------------GCTGCCGGCGA---------TGAAGCAGAGGAGAAAAAG---TC-----------------------------------------------------------------------AAGCAGCAAGTCGGATTCG------------------------------------------GCAGCCA--AGAAGC------------CA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TTTCGTTTTCT---------------CC--------------CCCAGC-CCTTTATAATGGTCTCGAAGAAGCGTTCCAATGCCGCTGAACGCGTCCAGCGCTCGACGGCGACT-------------------------------------------------------GCGGCAGCGGCGGCAGCA----------------GCAGCGG---CCGCAGCA------GCA---------------TCG-------GC---CTCCTCGA------------CGCAAGGCAAGAAGCGACC---CGGGAA--------GCAGGC---GAAAACCTCCAGC---------------------------GCCGGCGA---------TGAAGCAGAGGACAAAAAA---TC-----------------------------------------------------------------------AACCAGCAAGTCGGATTCA------------------AGCGCAGCGGGGTC---------TGCAGCCA--AGAAGC------------CA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TCCTCCCCC-----------------AGC-------------CCCAGC-CCTTTGCAATGGTCTCCAAGAAGCGTTCCAATGCCGCCGAGCGTGTCCAGCGCTCGACGGCGACT-------------------------------------------------------GCGGCGGCGGCAGCAGC-------------------GGCCG------CTGCA------GCA---------------GCG-------GC---GTCCACGA------------CGCAGGGCAAGAAGCGGCC---CGGGAA--------GCAGACGACGAAAGCCTCCGGC---------------------------GGCGGCGA---------CGAGGCGGAGGACAAGAAG---TC-----------------------------------------------------------------------CTCCAGCAAGACGGACTCG------------------AG---------------------TGCAGCCA--AGAAGC------------CG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TTCCATC-----------------------------------TCCAGC-CCTCTGAAATGGTCTCGAAGAAGCGCTCCAATGCCGCTGACCGAGTGCAGCGCTCGACGGCGACT-------------------------------------------------------GCGGCAGCGGCGGCGGCA----------------GCAGCGG---CGGCAGCAGCAGCAGCG---------------GCG-------GC---CTCCGCAA------------GCCAGGGCAAGAAGCGGCC---CGGGAA--------GCAGAC---GAAAGCCTCCAGC---------------------------GGCGGCGA---------TGAGGCGGAGGACAGCAAGAAGTC--------------------------------------------------------------------GTCGGCCAGCAAGACAG---------------CAGATTCCAG---------------------TGCAGCCA--AGAAGCC-----------AG	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TTTCTCTCT-----------------TATC-----GCCTT--CTCAGC-CCCTTGAAATGGTCTCGAAGAAGCGTTCCAATGCCGCTGAGCGTGTCCAACGCTCGACGGCAACT-------------------------------------------------------GCAGCGGCGGCTGCAGC-------------------GGCTGCCGCAGCAGCA------GCG---------------TCA-------TC---GTCTACAG------------CGCAGGGCAAGAAACGGCC---CGGAAA--------ACAGAC---GAAAACCTCCAGCGGCAGCGGCAGCGGTGGCGGCGGCGGCGGCGGCGA---------CGAAGCAGAGGATAAAAAG---TC-----------------------------------------------------------------------AGCCAGCAAAACAGATTCG------------------------------------------GCAGCTA--AGAAACCAGGCAAGGATCCC	Size	Hit Count	Total Norm	Total
No Reads

dm3

CCTCTTTCC-----------------CG--------------CACAGC-CCCACGAAATGGTCTCGAAGAAGCGCTCCAATGCCGCCGAGCGTGTCCAGCGTTCGACGGCGACT-------------------------------------------------------GCGGCAGCGGCGGCAGCA----------------GCAGCTG---CCGCAGCA------GCG---------------ACG-------GC---GTCCTCGA------------CGCAGGGCAAGAAGCGGCC---CGGGAA--------ACAGAC---GAAGGCCTCCGGT------------------------GGCGGCGGCGA---------CGAGGCGGATGACAAGAAG---TC-----------------------------------------------------------------------AGCCAGCAAAACAGATTCG------------------------------------------GCGGCCA--AGAAGC------------CG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
................................................................................................CAGCGTTCGACGGCGACT-------------------------------------------------------GCGGC.........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................AATGCCGCCGAGCGTGTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................GTGTCCAGCGTTCGACGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTCG------------------------------------------GCGGCCA--AGAAGC------------..	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................AGGGCAAGAAGCGGCC---CGGGAA--------AC.........................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................GAAATGGTCTCGAAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACAGATTCG------------------------------------------GCGGCCA--AG..................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................AC---GAAGGCCTCCGGT------------------------GGCGGCGG.....................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..........................................................................................................................................................................................................................................................................................................C---CGGGAA--------ACAGAC---GAAGGCCTCCGGT------------------------G............................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................ACGGCGACT-------------------------------------------------------GCGGCAGCGGCG..................................................................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................GGCGACT-------------------------------------------------------GCGGCAGCGGC...................................................................................................................................................................................................................................................................................................................................................................................................	18	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................CGACGGCGACT-------------------------------------------------------GCGGCAGCG.....................................................................................................................................................................................................................................................................................................................................................................................................	20	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................CAGCA----------------GCAGCTG---CCGCAGCA------GC..................................................................................................................................................................................................................................................................................................................................................	22	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

CCTCTTTCC-----------------CG--------------CACAGC-CCCACGAAATGGTCTCGAAGAAGCGCTCCAATGCCGCCGAGCGTGTTCAGCGTTCGACGGCGACT-------------------------------------------------------GCGGCAGCGGCGGCAGCA----------------GCAGCTG---CCGCAGCA------GCG---------------ACA-------GC---GTCCTCGA------------CGCAGGGCAAGAAGAGGCC---CGGGAA--------ACAGAC---GAAGGGCTCCGGC---------------------------GGCTGCGA---------CGAGGCGGATGACAAGAAG---TC-----------------------------------------------------------------------AGCCAGCAAGACAGATTCG------------------------------------------GCGGCCA--AGAAGC------------CG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...............................................................................................................................................................................................................................................................................................................GGGAA--------ACAGAC---GAAGGGC...........................................................................................................................................................................................................................................	18	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAAGACAGATTCG------------------------------------------GC...........................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................TGCGA---------CGAGGCGGATG..............................................................................................................................................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

CCTCTTTCC-----------------CG--------------CACAGC-CCCACGAAATGGTCTCGAAGAAGCGCTCCAATGCCGCCGAGCGTGTTCAGCGTTCGACGGCGACT-------------------------------------------------------GCGGCAGCTGCGGCAGCA----------------GCAGCTG---CCGCAGCA------GCG---------------ACA-------GC---GTCCTCGA------------CGCAGGGCAAGAAGCGGCC---CGGGAA--------ACAGAC---GAAGGCATCCGGC---------------------------GGCGGCGA---------CGAGGCGGATGAGAAGAAG---TC-----------------------------------------------------------------------AGCCAGCAAGACAGATTCG------------------------------------------GCGGCCA--AGAAGC------------CG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................C-----------------------------------------------------------------------AGCCAGCAAGACAGATTCG------------------------------------------.............................	20	1	1.00	1	0	1	0	0

droYak3

CCTCTTTCT-----------------CG--------------CACAGC-CCCTTAAAATGGTCTCGAAGAAGCGCTCCAATGCCGCCGACCGTGTCCAGCGTTCGACTGCGACT-------------------------------------------------------GCGGCAGCGGCGGCGGCA----------------GCAGCTG---CCGCAGCA------GCG---------------ACG-------GT---GTCCACGA------------CGCAGGGCAAGAAGCGGCC---CGGGAA--------ACAGAC---GAAGGCCTCCAGC---------------------------GGCGGCGA---------CGAGGCGGACGACAAGAAG---TC-----------------------------------------------------------------------TGCCAGCAAGACAGACACG------------------------------------------GCGGCCA--AGAAGC------------CG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................CGACAAGAAG---TC-----------------------------------------------------------------------TGCCAGCAAGACA.............................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................A----------------GCAGCTG---CCGCAGCA------GCG---------------ACG-------G.......................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

TTTCCCG-----------------------------------CACAGC-CCATTGAAATGGTCTCGAAGAAGCGCTCCAATGCTGCCGAGCGTGTCCAGCGTTCGACGGCGACT-------------------------------------------------------GCGGCAGCGGCGGCAGC-------------------AGCTG---CCGCAGCA------GCG---------------ACG-------GC---GTCCACGA------------CCCAGGGCAAGAAGCGGCC---CGGGAA--------ACAGAC---GAAGGCCTCCAGC---------------------------GGCGGCGA---------CGAGGCGGAGGACAAGAAG---TC-----------------------------------------------------------------------CGCCAGCAAGACAGATTCG------------------------------------------GCGGCCA--AGAAGC------------CG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
............................................................................CCAATGCTGCCGAGCGTGTCCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0

dpe_743

scaffold_13:1131399-1131549 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-47.0	-46.9	-46.8