dpe_74

TAAGAATTCAGCCGCATGTTTGAAGGCTTTTTCACATTTGTGGCGAAATTGTAAAATCAAATTGGGTTCTTTATTTGTGTATTTGTATTAATAAAGCTTGATTTGATTTTCACATTGAACCAAATTTGACATCGAGCTTTAAAACGCGACAGTCACACATGCA ***********************************...(((......(((((((((((((((((..(((((((.(((......))).))))))))))))))))))))).))).....))).....**********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V111 male body	M042 female body	V050 head	V042 embryo
...........................................................................................TAAAGCTTGATTTGATTTTCA...................................................	21	0	1	454.00	454	410	31	12	1
...........................................................................................TAAAGCTTGATTTGATTTTC....................................................	20	0	1	41.00	41	32	7	2	0
..........................................................................................ATAAAGCTTGATTTGATTTTCA...................................................	22	0	1	33.00	33	25	4	4	0
...........................................................................................TAAAGCTTGATTTGATTTTCT...................................................	21	1	1	29.00	29	26	1	2	0
...........................................................................................TAAAGCTTGATTTGATTTTCC...................................................	21	1	1	13.00	13	12	1	0	0
...........................................................................................TAAAGCTTGATTTGATTTTCAA..................................................	22	1	1	12.00	12	10	2	0	0
..........................................................................................ATAAAGCTTGATTTGATTTTC....................................................	21	0	1	7.00	7	5	2	0	0
...........................................................................................TAAAGCTTGATTTGATTTT.....................................................	19	0	1	7.00	7	7	0	0	0
...........................................................................................TAAAGCTTGATTTGATTTTCAT..................................................	22	1	1	6.00	6	6	0	0	0
...........................................................................................TAAAGCTTGATTTGATTTTCAAA.................................................	23	1	1	5.00	5	5	0	0	0
...........................................................................................TAAAGCTTGATTTGATTTTCG...................................................	21	1	1	4.00	4	4	0	0	0
..........................................................................................ATAAAGCTTGATTTGATTTTCT...................................................	22	1	1	3.00	3	3	0	0	0
...........................................................................................AAAAGCTTGATTTGATTTTCA...................................................	21	1	1	2.00	2	2	0	0	0
...........................................................................................TAAAGCTTGATTTGATTTTCTC..................................................	22	1	1	2.00	2	2	0	0	0
....................................................AAAATCAAATTGGGTTCTTTATT........................................................................................	23	0	1	2.00	2	0	2	0	0
...........................................................................................TAAAGCTTGATTTGATTTTCTT..................................................	22	2	1	2.00	2	1	1	0	0
...........................................................................................TAAAGCTTAATTTGATTTTCA...................................................	21	1	1	2.00	2	0	2	0	0
..................................................GTAAAATCAAATTGGGTTCT.............................................................................................	20	0	1	2.00	2	2	0	0	0
...........................................................................................TAAAGCTTGATTTGATTTTCAAAA................................................	24	2	1	2.00	2	2	0	0	0
...........................................................................................TAAAGCTTGATTTGATTTTCTCT.................................................	23	2	1	2.00	2	1	0	1	0
..........................................................................................CTAAAGCTTGATTTGATTTTCA...................................................	22	1	1	2.00	2	1	1	0	0
..........................................................................................ATAAAGCTTGATTTGATTTTCAA..................................................	23	1	1	1.00	1	1	0	0	0
...........................................................................................TAAGGCTTGATTTGATTTTCA...................................................	21	1	1	1.00	1	1	0	0	0
..........................................................................................ATAAAGCTTGATTTGATTTTCTA..................................................	23	2	1	1.00	1	1	0	0	0
..........................................................................................ATAAAGCTTGATTTCATTTTCA...................................................	22	1	1	1.00	1	1	0	0	0
....................................................AAAATCAAATTGGGTTCTTTC..........................................................................................	21	1	1	1.00	1	1	0	0	0
..........................................................................................ATAAAGCTTGATTTGATTTTCCT..................................................	23	2	1	1.00	1	1	0	0	0
............................................................................................AAAGCTTGATTTGATTTTCA...................................................	20	0	1	1.00	1	0	1	0	0
...........................................................................................TAAAGCTTGATTTGATTTTCTCC.................................................	23	2	1	1.00	1	1	0	0	0
...........................................................................................TAAAGCTTGATTTGATTTTTA...................................................	21	1	1	1.00	1	1	0	0	0
...........................................................................................TAAAGCTTGATTTGATTTTCATCT................................................	24	2	1	1.00	1	1	0	0	0
..........................................................................................ATAAAGCTTGATTTGATTTTCAAA.................................................	24	1	1	1.00	1	1	0	0	0
..........................................................................................ATAAAGCTTGATTTGATTTTCTT..................................................	23	2	1	1.00	1	1	0	0	0
....................................................AAAATCAAATTGGGTTCTTTAT.........................................................................................	22	0	1	1.00	1	1	0	0	0
...........................................................................................TAAAGCTTGATTTGATTTTCATT.................................................	23	2	1	1.00	1	1	0	0	0
...........................................................................................TAAAGCTTGATTTGATTTTCAG..................................................	22	1	1	1.00	1	1	0	0	0
............................................................................................AAAGCTTGTTTTGATTTTCA...................................................	20	1	1	1.00	1	0	1	0	0
..........................................................................................ATAAAGCTTGATTTGATTTTCAT..................................................	23	1	1	1.00	1	0	0	1	0
...........................................................................................TAAAGCTTTATTTGATTTTCA...................................................	21	1	1	1.00	1	0	1	0	0
....................................................AAAATCAAATTGGGTTCTTT...........................................................................................	20	0	1	1.00	1	1	0	0	0
...........................................................................................TAAAGCTTGATTGGATTTTCA...................................................	21	1	1	1.00	1	1	0	0	0
...........................................................................................TACAGCTTGATTTGATTTTCA...................................................	21	1	1	1.00	1	1	0	0	0
...........................................................................................TAAAGTTTGATTTGATTTTCA...................................................	21	1	1	1.00	1	1	0	0	0
..........................................................................................ATAAAGCTTGATTTGATTTTCTCT.................................................	24	2	1	1.00	1	1	0	0	0
...........................................................................................TAAAGCTTGATTTGATCTTCA...................................................	21	1	1	1.00	1	0	0	1	0
...........................................................................................TAAAGCTTGATTTGATTTTCTA..................................................	22	2	1	1.00	1	1	0	0	0
..........................................................................................ATAAAGCTTGATTTGATTTTCG...................................................	22	1	1	1.00	1	1	0	0	0
...........................................................................................TAAAGCTTGATTTGATTTTA....................................................	20	1	1	1.00	1	1	0	0	0
...........................................................................................TAAAGCTTGATTTGATTTTCATC.................................................	23	2	1	1.00	1	1	0	0	0
...........................................................................................TAAAGCTTGATTTGATTTTCTTC.................................................	23	3	1	1.00	1	1	0	0	0
.............................................................................................AAGCTTGATTTGATTTTCA...................................................	19	0	1	1.00	1	0	1	0	0
...........................................................................................TAAAGCTTGATTCGATTTTCA...................................................	21	1	1	1.00	1	1	0	0	0
...........................................................................................TAAAGCTTCATTTGATTTTCA...................................................	21	1	1	1.00	1	0	1	0	0
...........................................................................................TAAAGCTTGATTTGATTTA.....................................................	19	1	1	1.00	1	1	0	0	0
...........................................................................................TAAAGCTTGCTTTGATTTT.....................................................	19	1	1	1.00	1	0	0	1	0
...........................................................................................TAAAGCTTGGTTTGATTTTCT...................................................	21	2	2	0.50	1	1	0	0	0
...........................................................................................TAAAGCTTGATTTGATTTG.....................................................	19	1	2	0.50	1	1	0	0	0
...........................................................................................TAAAGCTTGATTTGATTTTCCT..................................................	22	2	2	0.50	1	1	0	0	0
...........................................................................................TAAAGCTTGATTTGATTTTCTTT.................................................	23	3	6	0.17	1	1	0	0	0
..............................................................TGCGTGCTTTATTTGTGAAT.................................................................................	20	3	20	0.05	1	0	0	0	1

Species	Coordinate	ID	Type	Alignment
droPer2	scaffold_4:2565145-2565307 +	dpe_74	confident	TAAGAATTCAGCCGCATGTTTGAAGGCTTTTTCACATTTGTGGCGAAATTGTAAAATCAAATTGGGTTCTTTATTTGTGTATTTGTATTAATAAAGCTTGATTTGATTTTCACATTGAACCAAATTTGACATCGAGCTTTAAAACGCGACAGTCACACAT--GCA
dp5	3:8678461-8678625 +	dps-mir-2551	Known_mirbase	TAAGAATTCAGCCGCATGTTTGAAGGCTTTTTCACATTTATGGCGAAATTGTAAAATCAAATTGGGTTCTTTATTTGTGTATTTGTATTAATAAAGCTTGATTTGATTTTCACATTGATCCAAATTTGACATCGAGCTTTAAAACGCGACAGTCAAACATGTGCA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droPer2

TAAGAATTCAGCCGCATGTTTGAAGGCTTTTTCACATTTGTGGCGAAATTGTAAAATCAAATTGGGTTCTTTATTTGTGTATTTGTATTAATAAAGCTTGATTTGATTTTCACATTGAACCAAATTTGACATCGAGCTTTAAAACGCGACAGTCACACAT--GCA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...........................................................................................TAAAGCTTGATTTGATTTTCA.....................................................	21	1	454.00	454	0	31	1	12	0	410
...........................................................................................TAAAGCTTGATTTGATTTTC......................................................	20	1	41.00	41	0	7	0	2	0	32
..........................................................................................ATAAAGCTTGATTTGATTTTCA.....................................................	22	1	33.00	33	0	4	0	4	0	25
...........................................................................................TAAAGCTTGATTTGATTTTCT.....................................................	21	1	29.00	29	0	1	0	2	0	26
...........................................................................................TAAAGCTTGATTTGATTTTCC.....................................................	21	1	13.00	13	0	1	0	0	0	12
...........................................................................................TAAAGCTTGATTTGATTTTCAA....................................................	22	1	12.00	12	0	2	0	0	0	10
..........................................................................................ATAAAGCTTGATTTGATTTTC......................................................	21	1	7.00	7	0	2	0	0	0	5
...........................................................................................TAAAGCTTGATTTGATTTT.......................................................	19	1	7.00	7	0	0	0	0	0	7
...........................................................................................TAAAGCTTGATTTGATTTTCAT....................................................	22	1	6.00	6	0	0	0	0	0	6
...........................................................................................TAAAGCTTGATTTGATTTTCG.....................................................	21	1	4.00	4	0	0	0	0	0	4
..........................................................................................ATAAAGCTTGATTTGATTTTCT.....................................................	22	1	3.00	3	0	0	0	0	0	3
....................................................AAAATCAAATTGGGTTCTTTATT..........................................................................................	23	1	2.00	2	0	2	0	0	0	0
...........................................................................................TAAAGCTTGATTTGATTTTCTT....................................................	22	1	2.00	2	0	1	0	0	0	1
..................................................GTAAAATCAAATTGGGTTCT...............................................................................................	20	1	2.00	2	0	0	0	0	0	2
..........................................................................................ATAAAGCTTGATTTGATTTTCAA....................................................	23	1	1.00	1	0	0	0	0	0	1
..........................................................................................ATAAAGCTTGATTTGATTTTCTA....................................................	23	1	1.00	1	0	0	0	0	0	1
....................................................AAAATCAAATTGGGTTCTTTC............................................................................................	21	1	1.00	1	0	0	0	0	0	1
..........................................................................................ATAAAGCTTGATTTGATTTTCCT....................................................	23	1	1.00	1	0	0	0	0	0	1
............................................................................................AAAGCTTGATTTGATTTTCA.....................................................	20	1	1.00	1	0	1	0	0	0	0
..........................................................................................ATAAAGCTTGATTTGATTTTCTT....................................................	23	1	1.00	1	0	0	0	0	0	1
....................................................AAAATCAAATTGGGTTCTTTAT...........................................................................................	22	1	1.00	1	0	0	0	0	0	1
...........................................................................................TAAAGCTTGATTTGATTTTCATT...................................................	23	1	1.00	1	0	0	0	0	0	1
...........................................................................................TAAAGCTTGATTTGATTTTCAG....................................................	22	1	1.00	1	0	0	0	0	0	1
..........................................................................................ATAAAGCTTGATTTGATTTTCAT....................................................	23	1	1.00	1	0	0	0	1	0	0
....................................................AAAATCAAATTGGGTTCTTT.............................................................................................	20	1	1.00	1	0	0	0	0	0	1
...........................................................................................TAAAGCTTGATTTGATTTTCTA....................................................	22	1	1.00	1	0	0	0	0	0	1
..........................................................................................ATAAAGCTTGATTTGATTTTCG.....................................................	22	1	1.00	1	0	0	0	0	0	1
...........................................................................................TAAAGCTTGATTTGATTTTA......................................................	20	1	1.00	1	0	0	0	0	0	1
...........................................................................................TAAAGCTTGATTTGATTTTCATC...................................................	23	1	1.00	1	0	0	0	0	0	1
...........................................................................................TAAAGCTTGATTTGATTTTCTTC...................................................	23	1	1.00	1	0	0	0	0	0	1
.............................................................................................AAGCTTGATTTGATTTTCA.....................................................	19	1	1.00	1	0	1	0	0	0	0
...........................................................................................TAAAGCTTGATTTGATTTA.......................................................	19	1	1.00	1	0	0	0	0	0	1
...........................................................................................TAAAGCTTGATTTGATTTG.......................................................	19	2	0.50	1	0	0	0	0	0	1
...........................................................................................TAAAGCTTGATTTGATTTTCCT....................................................	22	2	0.50	1	0	0	0	0	0	1
...........................................................................................TAAAGCTTGATTTGATTTTCTTT...................................................	23	6	0.17	1	0	0	0	0	0	1

dp5

TAAGAATTCAGCCGCATGTTTGAAGGCTTTTTCACATTTATGGCGAAATTGTAAAATCAAATTGGGTTCTTTATTTGTGTATTTGTATTAATAAAGCTTGATTTGATTTTCACATTGATCCAAATTTGACATCGAGCTTTAAAACGCGACAGTCAAACATGTGCA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...........................................................................................TAAAGCTTGATTTGATTTTCA.....................................................	21	1	1643.00	1643	2	429	9	13	6	119	473	17	575	0
...........................................................................................TAAAGCTTGATTTGATTTTC......................................................	20	1	219.00	219	4	55	10	20	0	11	44	1	74	0
..........................................................................................ATAAAGCTTGATTTGATTTTCA.....................................................	22	1	148.00	148	1	26	0	0	0	5	31	5	80	0
....................................................AAAATCAAATTGGGTTCTTTATT..........................................................................................	23	1	130.00	130	0	4	1	2	0	1	0	0	122	0
...........................................................................................TAAAGCTTGATTTGATTTTCT.....................................................	21	1	95.00	95	0	14	0	3	0	13	37	0	28	0
...........................................................................................TAAAGCTTGATTTGATTTTCAA....................................................	22	1	75.00	75	0	32	0	0	1	8	9	1	24	0
...........................................................................................TAAAGCTTGATTTGATTTTCC.....................................................	21	1	62.00	62	0	11	0	8	0	2	10	0	31	0
....................................................AAAATCAAATTGGGTTCTTTA............................................................................................	21	1	47.00	47	0	0	0	0	0	1	0	0	46	0
...........................................................................................TAAAGCTTGATTTGATTTT.......................................................	19	1	39.00	39	0	10	1	1	1	5	4	0	17	0
....................................................AAAATCAAATTGGGTTCTTTATTT.........................................................................................	24	1	38.00	38	0	2	0	0	0	1	1	0	34	0
....................................................AAAATCAAATTGGGTTCTTTAT...........................................................................................	22	1	34.00	34	0	1	0	0	0	0	1	1	31	0
..........................................................................................ATAAAGCTTGATTTGATTTTC......................................................	21	1	32.00	32	0	7	1	1	0	2	4	0	17	0
....................................................AAAATCAAATTGGGTTCTTT.............................................................................................	20	1	27.00	27	0	2	0	1	0	0	0	0	24	0
............................................................................................AAAGCTTGATTTGATTTTCA.....................................................	20	1	16.00	16	0	16	0	0	0	0	0	0	0	0
....................................................AAAATCAAATTGGGTTCTTTATTC.........................................................................................	24	1	15.00	15	0	0	0	0	0	0	0	0	15	0
...........................................................................................TAAAGCTTGATTTGATTTTCG.....................................................	21	1	14.00	14	0	3	0	0	0	1	3	0	7	0
....................................................AAAATCAAATTGGGTTCTTTATC..........................................................................................	23	1	13.00	13	0	0	0	2	0	0	0	0	11	0
...........................................................................................TAAAGCTTGATTTGATTTTCCA....................................................	22	1	12.00	12	0	0	0	0	0	0	2	0	10	0
....................................................AAAATCAAATTGGGTTCTTTAA...........................................................................................	22	1	10.00	10	0	0	0	0	0	0	1	0	9	0
..........................................................................................ATAAAGCTTGATTTGATTTTCAA....................................................	23	1	9.00	9	0	1	0	0	0	0	1	0	7	0
..........................................................................................ATAAAGCTTGATTTGATTTTCC.....................................................	22	1	9.00	9	0	2	0	3	0	0	2	0	2	0
....................................................AAAATCAAATTGGGTTCTTTATTCC........................................................................................	25	1	8.00	8	0	2	0	1	0	0	0	0	5	0
..........................................................................................ATAAAGCTTGATTTGATTTTCT.....................................................	22	1	7.00	7	0	0	0	0	0	0	4	0	3	0
....................................................AAAATCAAATTGGGTTCTTTATTAA........................................................................................	25	1	7.00	7	0	0	0	0	0	0	0	0	7	0
....................................................AAAATCAAATTGGGTTCTTTATTA.........................................................................................	24	1	7.00	7	0	0	0	0	0	0	0	0	7	0
....................................................AAAATCAAATTGGGTTCTTTATCA.........................................................................................	24	1	6.00	6	0	0	0	0	0	0	0	0	6	0
...........................................................................................TAAAGCTTGATTTGATTTTCAC....................................................	22	1	6.00	6	0	1	0	2	0	0	1	0	2	0
....................................................AAAATCAAATTGGGTTCTTTATTTC........................................................................................	25	1	5.00	5	0	0	0	0	0	0	0	0	5	0
....................................................AAAATCAAATTGGGTTCTTTATTTCCC......................................................................................	27	1	4.00	4	0	1	0	0	0	0	0	0	3	0
....................................................AAAATCAAATTGGGTTCTTTAAA..........................................................................................	23	1	4.00	4	0	0	0	0	0	0	0	0	4	0
..........................................................................................ATAAAGCTTGATTTGATTTTCCA....................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	3	0
...........................................................................................TAAAGCTTGATTTGATTTTCTA....................................................	22	1	3.00	3	0	0	0	0	0	0	0	0	3	0
....................................................AAAATCAAATTGGGTTCTT..............................................................................................	19	1	3.00	3	0	0	0	0	0	0	0	0	3	0
...........................................................................................TAAAGCTTGATTTGATTTTCAT....................................................	22	1	3.00	3	0	0	0	0	0	1	1	0	1	0
...........................................................................................TAAAGCTTGATTTGATTTTCATC...................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	3	0
...........................................................................................TAAAGCTTGATTTGATTTTCCT....................................................	22	2	2.50	5	1	1	0	0	0	0	1	0	2	0
....................................................AAAATCAAATTGGGTTCTTTATTTCA.......................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	2	0
....................................................AAAATCAAATTGGGTTCTTC.............................................................................................	20	1	2.00	2	0	1	0	0	0	0	0	0	1	0
...........................................................................................TAAAGCTTGATTTGATTTTT......................................................	20	1	2.00	2	0	1	0	0	0	0	0	0	1	0
....................................................AAAATCAAATTGGGTTCTTTATTCA........................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	2	0
............................................................................................AAAGCTTGATTTGATTTTCAA....................................................	21	2	2.00	4	0	4	0	0	0	0	0	0	0	0
....................................................AAAATCAAATTGGGTTCTTTATA..........................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	2	0
..........................................................................................ATAAAGCTTGATTTGATTTTCTTT...................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	2	0
............................................................................................AAAGCTTGATTTGATTTTCC.....................................................	20	1	2.00	2	0	1	0	1	0	0	0	0	0	0
............................................................................................AAAGCTTGATTTGATTTTC......................................................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...................................................TAAAATCAAATTGGGTTCTTTATTCT........................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	2	0
...........................................................................................TAAAGCTTGATTTGATTTTCATG...................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	2	0
....................................................AAAATCAAATTGGGTTCTTTAG...........................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	2	0
...........................................................................................TAAAGCTTGATTTGATTTTA......................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	2	0
.....................................................AAATCAAATTGGGTTCTTTAA...........................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	2	0
....................................................AAAATCAAATTGGGTTCTTTC............................................................................................	21	1	2.00	2	0	1	0	0	0	0	0	0	1	0
....................................................AAAATCAAATTGGGTTCTTTATTTCCA......................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	2	0
....................................................AAAATCAAATTGGGTTCTTTATCCC........................................................................................	25	1	2.00	2	0	1	0	0	0	0	0	0	1	0
....................................................AAAATCAAATTGGGTTCTTTATTCCC.......................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	2	0
....................................................AAAATCAAATTGGGTTCTTTT............................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	2	0
....................................................AAAATCAAATTGGGTTCTTTATCC.........................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	2	0
....................................................AAAATCAAATTGGGTTCTTTATTTCAA......................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	2	0
...........................................................................................TAAAGCTTGATTTGATTTTCTT....................................................	22	2	1.50	3	0	0	0	0	0	0	2	0	1	0
...................................................TAAAATCAAATTGGGTTCTTT.............................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0
..........................................................................................ATAAAGCTTGATTTGATTTTCTA....................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0
...........................................................................................TAAAGCTTGATTTGATTTTCACA...................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0
...........................................................................................TAAAGCTTGATTTGATTTTCAATG..................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	1	0
....................................................AAAATCAAATTGGGTTCTTTATTCT........................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0
......................................................AATCAAATTGGGTTCTTTATTCCA.......................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................AAATCAAATTGGGTTCTTTATTT.........................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	1	0
............................................................................................AAAGCTTGATTTGATTTTCAC....................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................TAAAGCTTGATTTGATTTTCGA....................................................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0
....................................................AAAATCAAATTGGGTTCTTTATG..........................................................................................	23	1	1.00	1	0	0	0	0	0	1	0	0	0	0
...........................................................................................TAAAGCTTGATTTGATTTTCAG....................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.....................................................AAATCAAATTGGGTTCTTTA............................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	1	0
...............................................................................TATTTGTATTAATAAAGCTTGATT..............................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	1	0
............................................................................................AAAGCTTGATTTGATTTTCACA...................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0
...................................................TAAAATCAAATTGGGTTCTTTATC..........................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..........................................................................................ATAAAGCTTGATTTGATTTA.......................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	1	0
....................................................AAAATCAAATTGGGTTCTTTATTTAA.......................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	1	0
..........................................................................................ATAAAGCTTGATTTGATTTT.......................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	1	0
...........................................................................................TAAAGCTTGATTTGATTTTCCTT...................................................	23	3	0.67	2	0	0	0	0	0	0	0	0	2	0
...........................................................................................TAAAGCTTGATTTGATTTTCTGT...................................................	23	2	0.50	1	0	0	0	0	0	0	0	0	1	0
....................................................AAAATCAAATTGGGTTCTTTTA...........................................................................................	22	2	0.50	1	0	0	0	0	0	0	0	0	1	0
...........................................................................................TAAAGCTTGATTTGATA.........................................................	17	5	0.20	1	0	0	0	0	0	0	0	0	1	0
...........................................................................................TAAAGCTTGATTTGATTTAA......................................................	20	5	0.20	1	0	0	0	0	0	0	0	0	1	0

dpe_74

scaffold_4:2565195-2565257 +

Known Ortholog

Testes-restricted

intergenic

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-18.7	-18.7	-18.5