ID:

dpe_739

 Coordinate:

scaffold_13:936151-936301 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dper\GL12939-cds]; exon [dper_GLEANR_13118:2]; intron [Dper\GL12939-in]

Repeatable elements

NameClassFamilyStrand
Hopers2DNAhAT-hobo+
Hopers2DNAhAT-hobo+

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------######--------------------------------------------
TTCGCCACACCCCCTTCCGCCCCCGCAAAGGACGAAAATCTGAGGCAACCACAAATCTCAGAGACTATTAAGGCTAGAGTAACCAAATTTGGTGCACACACTCCTTTAAGATGTCACTATAAAACGTATATCTCAGAATTTCGCCCCACCCCCATCCGCCCCCACAAAGGACGAAAATCTGTTGCATCCACAATATTGCAGATTTGAGAAAACTAAAAACGCAGAATCATAGATAATGACCATATCTATTA
**************************************************...................((((.....((.((((....))))..)).....))))..((((((.((........))))))))((((.(((((((.......................)).))))).))))(((((..........)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 V111
male body
........................GCAAAGGACGAAAATCTGAGG.............................................................................................................................................................................................................. 21 0 20 0.05 1 0 1
.............................................................................................................................................................................................................................CAGAATCATAGATAATGACCATATCTA... 27 0 20 0.05 1 1 0

Anti-sense strand reads

AAGCGGTGTGGGGGAAGGCGGGGGCGTTTCCTGCTTTTAGACTCCGTTGGTGTTTAGAGTCTCTGATAATTCCGATCTCATTGGTTTAAACCACGTGTGTGAGGAAATTCTACAGTGATATTTTGCATATAGAGTCTTAAAGCGGGGTGGGGGTAGGCGGGGGTGTTTCCTGCTTTTAGACAACGTAGGTGTTATAACGTCTAAACTCTTTTGATTTTTGCGTCTTAGTATCTATTACTGGTATAGATAAT
**************************************************...................((((.....((.((((....))))..)).....))))..((((((.((........))))))))((((.(((((((.......................)).))))).))))(((((..........)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 V111
male body		 V042
embryo
 M021
embryo
........................................................................................................................................................................................GTAGGTGTTATAACGTCTAAACTCT.......................................... 25 0 20 1.15 23 23 0 0 0
...................................................................................................TGAGGAAATTCTACAGTGATAT.................................................................................................................................. 22 0 20 1.00 20 20 0 0 0
.......................................................................................................................................................GGTAGGCGGGGGTGTTTCCT................................................................................ 20 0 20 0.25 5 5 0 0 0
.........................................................................................................................................................................CTGCTTTTAGACAACGTAGGT............................................................. 21 0 20 0.25 5 5 0 0 0
............................................................................................................................................................................................GTGTTATAACGTCTAAACTCTTT........................................ 23 0 20 0.15 3 3 0 0 0
...................................................................................................TGAGGAAATTCTACAGTGATATT................................................................................................................................. 23 0 20 0.15 3 0 3 0 0
......................................................................................................................................................................TTCCTGCTTTTAGACAACGT................................................................. 20 0 20 0.10 2 0 0 2 0
......................................................................................................................................................................................ACGTAGGTGTTATAACGTCTA................................................ 21 0 20 0.10 2 2 0 0 0
........................................................................................AACCACGTGTGTGAGGAAAT............................................................................................................................................... 20 0 20 0.10 2 2 0 0 0
.........................................CTCCGTTGGTGTTTAGAGT............................................................................................................................................................................................... 19 0 20 0.05 1 0 0 0 1
.......................GCGTTTCCTGCTTTTAGACT................................................................................................................................................................................................................ 20 0 20 0.05 1 0 0 1 0
.....................GGGCGTTTCCTGCTTTTAGACT................................................................................................................................................................................................................ 22 0 20 0.05 1 1 0 0 0
........................................................................................................................................................GTAGGCGGGGGTGTTTCCTGCTT............................................................................ 23 0 20 0.05 1 1 0 0 0
.........................................................................................................................TTTGCATATAGAGTCTTAAAGC............................................................................................................ 22 0 20 0.05 1 0 0 1 0
.............................................................................................................................................GCGGGGTGGGGGTAGGCGGGG......................................................................................... 21 0 20 0.05 1 0 1 0 0
...........................TTCCTGCTTTTAGACTCCGTTGGTGTT..................................................................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0
..................................................................................GGTTTAAACCACGTGTGTGAG.................................................................................................................................................... 21 0 20 0.05 1 1 0 0 0
.............................................GTTGGTGTTTAGAGTCTCT........................................................................................................................................................................................... 19 0 20 0.05 1 1 0 0 0
...................................................................................................................................................TGGGGGTAGGCGGGGGTGTT.................................................................................... 20 0 20 0.05 1 1 0 0 0
...........................TTCCTGCTTTTAGGCTCCGTTG.......................................................................................................................................................................................................... 22 1 20 0.05 1 0 1 0 0
...................................................................................................TGAGGAAATTCTACAGTGAT.................................................................................................................................... 20 0 20 0.05 1 1 0 0 0
.................................................................................................................................................GGTGGGGGTAGGCGGGGGTGTT.................................................................................... 22 0 20 0.05 1 1 0 0 0
................GGCGGGGGCGTTTCCTGCTT....................................................................................................................................................................................................................... 20 0 20 0.05 1 1 0 0 0
.............................................................................................................................................................CGGGGGTGTTTCCTGCTTTTAGACAA.................................................................... 26 0 20 0.05 1 0 1 0 0
.........................................................................................ACCACGTGTGTGAGGAAAT............................................................................................................................................... 19 0 20 0.05 1 1 0 0 0
....................................TTAGACTCCGTTGGTGTTTAGAGTCA............................................................................................................................................................................................. 26 1 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_13:936101-936351 - dpe_739 TTCGC-------CACACCCCCTTCCGCCCCCGCAAAGGACGAAA-ATCTGAGGCAACC-------ACAAATCTCAGAGACTATTAAG------------------GCTAGAGTAACCAAATTTGGTGCACACACTCCTTTAAGATGTCACTAT-----AAAACGTATATCTCAGAATTTCGCCCCACCCCCATCCGCCCCCACAA----------------------------------------------------------------------------------------------------------------------------------------------AG--------GACGAAAATCTGTT----GCATC----CACAATATTGCAG----------------------------------------ATTTGAG-AA-AACTAAAAACGCAGAATCATAGATAATGACCATATCTATTA
dp5 4_group3:1511824-1512074 - TTCGC-------CACACCCCCTTCCGCCCCCGCAAAGGACGAAA-ATCTGAGGCAACC-------ACAAATCTCAGAGACTATTAAG------------------GCTAGAGTAACCAAATTTGGTGCACACACTCCTTTAAGATGTCACTAT-----AAAACGTATATCTCAGAATTTCGCCCCACCCCCATCCGCCCCCACAA----------------------------------------------------------------------------------------------------------------------------------------------AG--------GACGAAAATCTGTT----GCATC----CACAATATTGCAG----------------------------------------ATTTGAG-AA-AACTAAAAACGCAGAATCATAGATAATGACCATATCTATTA
droWil2 scf2_1100000004968:3162980-3163222 + TTTGG-------CACGCCCATTTCCGCCCCCGCAAATTAAACAA-AA----------------CTGATTTTCTCGGAAACTAAAAAA------------------GCTAAAGTCACCAAATTTAGTATGTATACTGGCTTAGTATG--CGC---GCAGAATACATATATTTTAGTATGTTGCCACGCCCACTTCCGCCTCCATAA----------------------------------------------------------------------------------------------------------------------------------------------TT--------TAGAAAAAACCGAT----TGGCT----CTTA-CAATTTTTTG--------------------------------------ACCATCG-CG-AACAAATTTGGCAGATTGATAAATCTTATCTATTTCTATCA
droVir3 scaffold_13050:1525614-1525781 + CGATA----------ACCTACTCCGTTTCCCAGCAATCGATAAAAATCGATATCAATA-------TC-----CTGTTTCTTGAGCAATTTTGGTATGTATTAAGAGCTAGAGTCACCAAACTTGATATGTTGCTT----CAAGAACATTAA---ATATATTAAGTATCTTTCA--TTTTAT----ACCTATCGCCACCTCCCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6473:12319793-12319971 - CGAA------------------------------AACCAGTAAT-AA----------------ATGTATATCTCAGACATCTTTATA------------------GCTAGAGTTATAAAATTTTTAATGTAGTTTTA-----TATGTACTTTATGGAACTTCGATTTTTATCAAAATTTACC------------------------------------------------------------------------------------------------------------------------CCCCACC----------------------------------------------------CTAAATTCAC----TCCCT----CACC--------------------CACATATTTCTAAAATGAGTATTTCAAATACT--AG----------AGAC----------------------------TTG
droGri2 scaffold_15245:18003905-18004072 - CGCA------------------------------AATCGAGAAA-GT-----------------CACATATCTCCCACAATTGTAAG------------------GCTAAAGTCACTAAATTTGGTTAGTAGGTTG-TTGGCGATGTCCTTTAAA--GACGGCA-------------TATACGACGCCCACCTCCGCCGCCCCAA----------------------------------------------------------------------------------------------------------------------------------------------G------------------GCCTT----TCTTT----CACAAT-------------------------------------------------T--TG-TA-AGCTAAAACCACAAAATTTTA------------------AA
droAna3 scaffold_13020:2308-2437 + TCCGA-------G---------------------------------------------TGAACTCGTGGATCTTAAAGACTATAAG-------------------CTCAGTGCTCTTAATTTAGGCACGGTGACTCCTGCAAATAA--AAC---GCAGGCCCCGTTTGTTTCAAGTTTGTGCCACGCCCCCGACCGCCCCCAAAA----------------------------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396503:70327-70489 + ATC---------------------------------------------------------------------TCGCAGAATAT-------------------------AGAGCTATCCGATTTGGA-CTTGGCCTCG--TAAGGTATCCGC---AAAGATCACGTTTGTGTCAACATTTTGCCACGCCCACTCCCGCCCCCAAAA----------------------------------------------------------------------------------------------------------------------------------------------C------------AGAAATCTGGT-T--GTAGC----CCCAGTTCGTTAA--------------------------------------AGTTT--TG-GA-AATTGCAACCAGACAATC-----------------------
droKik1 scf7180000302706:784760-784844 - TTAGC-------CATGTCCGCCTGTCCGCCTGTCCGTTA------GTG----------TGAAGCAACATATCTCAGAGAATATAAGA------------------GCTAGAGCTATTAAAATTGGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000453855:127243-127320 + AAAAT-------CG-GTTAACTCCACCATATAGCTGCCATACAA-AA--------------------------------------------------------------------------------------------------------------------------------------------------------------GATC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAATATATATATATAAATAATGAAAAAAATTATAA
droEle1 scf7180000491278:11234-11327 + TTCGCTCCTACTCACGCCCACTTTTACACCCACAAATCGTGAAA-ATATTT----A-----------------------------------------------------------------------------------------------------------------------------------------------------CTGTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTCTG--AGACA-TGTTAAAGCGACGGTATTCG--------------ACTCTGG
droRho1 scf7180000776895:5751-5980 - TCCGT-------CT-GTCCGTCTGTCCGTCCGTA------------------------TGAACGCTGAGATCTCGGAAACTATAAAA------------------GCTAGAAGATTGGCATTTTGCATGCAGATTCTAGGA--GTTCCTAC---GCAGCGCAAGTTTGTTTCAAAAAGGTGCCACGCCCCCTTTAACACCCACAA----------------------------------------------------------------------------------------------------------------------------------------------TC--------G-CTTATA-------------------TACGATTTTAAAAA-----TTTAA---------------------------ATTTTTCGG-AA-AAGTAAAAATGCAGTTTTATTGTGTTTATCAATACCTATCG
droBia1 scf7180000302250:27845-28042 + GGTGC-------CACGCCCACTCTAACGCCTACAATCCGAGAAA-AT--------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTAGCGCCTAGAGTTTTTAAGATAGAAACAAAATTTTGACTGAAATGCGTT-------------------------TGTCTCATTAAAACCTATCGACTAACCTAAAAAAAATGTGTCACGCACTCTCTAGCCCCCACAAACGATTAAAACGCTTAAATCTGTC----TGCCGCACACATAACATT------------------------------------------------------------------------------------------------
droTak1 scf7180000415708:613438-613671 + CTAGC-------CATGTCCGTCTGTCCGTCTGTA------------------------TGAACGCTGAGATCTCAGAAACTACAAAA------------------GCTAGAAGGTTGAGATTTTCCACACATATTCTTTGG--CTTCCTAC---GCAGCGCAAGTTTATTTCAGCCA---CTAACGCTTACAA--TCGCCCACTA----------------------------------------------------------------------------------------------------------------------------------------------AC--------GATTTTAAAATGGGTCCTGCACC----CACATCTTTAAAG----------------------------------------ATTTCCG-AG-AAGTATAAATGCAATTTTGTTGTGTATATTTATATCTATCG
droEug1 scf7180000409551:387152-387396 + CTAGC-------CACGCCCACCCTAACGCCCACAAAACCCGGAA-AACCAAAACTGC--------GAAAATCTCGGGACATATAAAA------------------GCTAGAAAGTTAGGCTTAAAAACACGTATTAAAGA--GATGCCGCT---GCAACTTGCCACTC-------ATCCGGCCACACCCACTCTAACGCCCACAA----------------------------------------------------------------------------------------------------------------------------------------------AC--------CGCGAAAAACTGTG----GCGTC----TATAATATTATTATAAAAATTAAA----------------------------------------AATATATTTTGCCTCCTAAAAGCTAATGACTGTGCATGTTA
dm3 chr3L:22995754-22995899 - CAG----------------------------------------------------------------AGTTCTCAGAAACTATTGAA------------------GCTAGAAAGATTAA-----GCATACAGGTTC--TAGAGACATTAGCGC-----AGAGCA-------------------------------ACGCCCACAA----------------------------------------------------------------------------------------------------------------------------------------------AG--------CGCCTAAATCTGCC----ACGCC----CACAATTTTGAAAAATGTTTTGAT-----------------ATC------AT---T--TG-TCAAACAAAAAAC-------------------------------
droSim2 node_50560:1256-1427 - TTCGC-------CACGCCCTCTTTCACGCCTACAAACCGCCCAA-AG--------------------------------------------------------------------------------------------------------------------------------------------------------------CTTACACGCCCACATTTTTGCAAAATGT---GACATTTTATCACATTTTTCTT-------------------------TGTCTTGTAAATATTCATCGATCTACCAAAAAA---TTTGCCCCGCC------------CACAGGC--------C-CCAAAAACTTCC----GCGCC----CACATTTTTGCAA----------------------------------------A---------------------------------------------------
droSec2 scaffold_14:115152-115215 + ATAAC-------CATGCCCACTCTAACGCCCACAAACCACCCAA-AA--------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCCACGACCACATTTTTTAAAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 3R:1165779-1165979 + TT-GC-------CACGCCCACTCTAACGCCCACAAACCGCCCAA-AA--------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCGACGCCCACATTTTTGAAAAATGTTTTGAAATTTGTTCATTTTTGTATT-------------------------AGTCTTGTAATTTTCTTTCTATTTACCAAAAAACTTTTTGCCACGCCCACTCTAACGCCCACAAAC--------CGCCCAAAACTGCC----ACGTC----CACACTTTTGAAAAATGTTTTGA--------------------------------------------------------------------------------AA
droEre2 scaffold_4845:1581907-1582141 + GTTGC-------CACTCCCACTCTAACGCCCACAAACCACCCAA-AA--------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCAACGCTCACACTTTTAAAAAATGTT---G----------------TCTTCTTTTTAAATTTTTTTTATATAATATATCTTGTAAATATCTCTAAATTTGCCAACAAATTTTTTGCCACGGCCACTCCAACGCCCCCAAAC--------CGCCCAAAACTGTC----TCGTC----CACACTTTTGAAAAACGCTGTAA---------------------------------------------TA--------TTTTTTAATTTTTGAATATATCTTGAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
TTCGC-------CACACCCCCTTCCGCCCCCGCAAAGGACGAAA-ATCTGAGGCAACC-------ACAAATCTCAGAGACTATTAAG------------------GCTAGAGTAACCAAATTTGGTGCACACACTCCTTTAAGATGTCACTAT-----AAAACGTATATCTCAGAATTTCGCCCCACCCCCATCCGCCCCCACAA----------------------------------------------------------------------------------------------------------------------------------------------AG--------GACGAAAATCTGTT----GCATC----CACAATATTGCAG----------------------------------------ATTTGAG-AA-AACTAAAAACGCAGAATCATAGATAATGACCATATCTATTASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...............................GCAAAGGACGAAA-ATCTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAATCATAGATAATGACCATATCTA...27200.051010000
dp5
TTCGC-------CACACCCCCTTCCGCCCCCGCAAAGGACGAAA-ATCTGAGGCAACC-------ACAAATCTCAGAGACTATTAAG------------------GCTAGAGTAACCAAATTTGGTGCACACACTCCTTTAAGATGTCACTAT-----AAAACGTATATCTCAGAATTTCGCCCCACCCCCATCCGCCCCCACAA----------------------------------------------------------------------------------------------------------------------------------------------AG--------GACGAAAATCTGTT----GCATC----CACAATATTGCAG----------------------------------------ATTTGAG-AA-AACTAAAAACGCAGAATCATAGATAATGACCATATCTATTASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................................................................................................................TGTCACTAT-----AAAACGTATATCTCAGAAT........................................................................................................................................................................................................................................................................................................................282043.10862086200000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAG-AA-AACTAAAAACGCAGA..........................23208.70174017400000000
................................................................................................................................................TGTCACTAT-----AAAACGTATATCTCAGAATT.......................................................................................................................................................................................................................................................................................................................29207.20144014400000000
...................................................................................TAAG------------------GCTAGAGTAACCAAATTTGG............................................................................................................................................................................................................................................................................................................................................................................24203.156306300000000
.....................................................................ATCTCAGAGACTATTAAG------------------GCTAG...........................................................................................................................................................................................................................................................................................................................................................................................23202.204400000004400
...........................................................................GAGACTATTAAG------------------GCTAGAGTAAC.....................................................................................................................................................................................................................................................................................................................................................................................23201.202402400000000
.....................................................................................................................................................................................................................................................................................................................................................................................................TATTGCAG----------------------------------------ATTTGAG-AA-AACT.....................................21201.002002000000000
............................................................................................................................................................................................................................................................................................................................................................G--------GACGAAAATCTGTT----GCATC----C........................................................................................................21200.951901900000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAG-AA-AACTAAAAACGCAGAATCA......................27200.951900190000000
.TCGC-------CACACCCCCTTCCGCCCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.4590900000000
.................................AAAGGACGAAA-ATCTGAGGCAACC-------A.......................................................................................................................................................................................................................................................................................................................................................................................................................................25200.4080000000080
....................................................................................................................CAAATTTGGTGCACACACTCCTT..............................................................................................................................................................................................................................................................................................................................................................2350.4020200000000
.........................................................................................................................................................................................................................................................................................................................................................................................ATC----CACAATATTGCAG----------------------------------------ATTTGAG-A...........................................24200.3570000000700
..........................CCCCCGCAAAGGACGAAA-ATCTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.3570700000000
...................................AGGACGAAA-ATCTGAGGCAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.3570000000070
.....................................................................................................................................................................................................................................................................................................................................................................................................TATTGCAG----------------------------------------ATTTGAG-AA-AACTAAAAAA...............................27200.3570000000610
................................................................................................................................................TGTCACTAT-----AAAACGTATATCTCAG...........................................................................................................................................................................................................................................................................................................................25200.3060000000060
..........................................................................AGAGACTATTAAG------------------GCTAGAGT........................................................................................................................................................................................................................................................................................................................................................................................21200.3060000006000
................................CAAAGGACGAAA-ATCTGAGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.3060600000000
.........................................................................................................................TTGGTGCACACACTCCTTTAAG..........................................................................................................................................................................................................................................................................................................................................................2240.2510100000000
.............................................................................................................................TGCACACACTCCTTTAAGA.........................................................................................................................................................................................................................................................................................................................................................1940.2510100000000
..............................................................................................................................................................................................CATCCGCCCCCACAA----------------------------------------------------------------------------------------------------------------------------------------------AG--------GACGA...............................................................................................................................22200.2550500000000
..........................................................................................................................TGGTGCACACACTCCTTTAAG..........................................................................................................................................................................................................................................................................................................................................................2140.2510100000000
........................................................................................................................TTTGGTGCACACACTCCTTTAAG..........................................................................................................................................................................................................................................................................................................................................................2340.2510100000000
............................CCCGCAAAGGACGAAA-ATCTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.2550500000000
................................................................................................................TAACCAAATTTGGTGCACACACTCC................................................................................................................................................................................................................................................................................................................................................................2540.2510100000000
.............................................................................................................................TGCACACACTCCTTTAAGATGTCACTA.................................................................................................................................................................................................................................................................................................................................................2740.2510000000100
................................................................................................................TAACCAAATTTGGTGCACACACTCCT...............................................................................................................................................................................................................................................................................................................................................................2640.2510100000000
.................................AAAGGACGAAA-ATCTGAGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.2550500000000
..........................................................................................................................TGGTGCACACACTCCTTTAAGA.........................................................................................................................................................................................................................................................................................................................................................2240.2510100000000
.....................................................................................................................AAATTTGGTGCACACACTCC................................................................................................................................................................................................................................................................................................................................................................2050.2010100000000
...............................................CTGAGGCAACC-------ACAAATCTCA..............................................................................................................................................................................................................................................................................................................................................................................................................................21200.2040400000000
.................................AAAGGACGAAA-ATCTGAGGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.2040000000040
...................................................................................................................CCAAATTTGGTGCACACACTCCTT..............................................................................................................................................................................................................................................................................................................................................................2450.2010100000000
........................................................................................................................................................................................................CACAA----------------------------------------------------------------------------------------------------------------------------------------------AG--------GACGAAAATCTGTT----GCATC----.........................................................................................................26200.2040000000040
......................................................................................................................................................................TATCTCAGAATTTCGCCCCACCCCCA.........................................................................................................................................................................................................................................................................................................26200.1530300000000
................................................................................................................................................TGTCACTAT-----AAAACGTATATCTCAGAA.........................................................................................................................................................................................................................................................................................................................27200.1530000300000
..........................................................................................................................................................................TCAGAATTTCGCCCCACCCCCATCC......................................................................................................................................................................................................................................................................................................25200.1530300000000
.........................................AAA-ATCTGAGGCAACC-------ACAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1530200000010
.................................AAAGGACGAAA-ATCTGAGGCAACC-------AC......................................................................................................................................................................................................................................................................................................................................................................................................................................26200.1530000000300
..............................................................................................................................GCACACACTCCTTTAAGATGT......................................................................................................................................................................................................................................................................................................................................................2180.1310100000000
.............ACACCCCCTTCCGCCCCCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1020200000000
.................................................................................................................................................................................TTCGCCCCACCCCCATCCGCCCCCA...............................................................................................................................................................................................................................................................................................25200.1020200000000
...........................................................................................................................................................................CAGAATTTCGCCCCACCCCCATCC......................................................................................................................................................................................................................................................................................................24200.1020200000000
............................................................................................................................................................................................................................................................................................................................................................................................................G----------------------------------------ATTTGAG-AA-AACTAAAAACGCAGAA.........................26200.1020000000200
..........................................................................AGAGACTATTAAG------------------GCTAGAGTAAC.....................................................................................................................................................................................................................................................................................................................................................................................24200.1020200000000
.................................................................................................................................................................................TTCGCCCCACCCCCATCCGCCC..................................................................................................................................................................................................................................................................................................22200.1020020000000
.............................CCGCAAAGGACGAAA-ATCTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1020000000200
..............................................TCTGAGGCAACC-------ACAAATCTC...............................................................................................................................................................................................................................................................................................................................................................................................................................21200.1020200000000
...................................AGGACGAAA-ATCTGAGGCAACC-------ACC.....................................................................................................................................................................................................................................................................................................................................................................................................................................25200.1020000000020
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAG-AA-AACTAAAAACGCAGAATCA......................26200.1020000000200
................................................................................................................................................................................TTTCGCCCCACCCCCATCCG.....................................................................................................................................................................................................................................................................................................20200.1020200000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAG-AA-AACTAAAAACGCAGAATCAC.....................28200.1020020000000
.................................................GAGGCAACC-------ACAAATCTCAGAGACC........................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510001000000
...................................AGGACGAAA-ATCTGAGGCAACC-------ACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510100000000
......................................................................................................................................................................TATCTCAGAATTTCGCCCCACCCC...........................................................................................................................................................................................................................................................................................................24200.0510001000000
..........................................................................................................................................................................TCAGAATTTCGCCCCACCCCCATC.......................................................................................................................................................................................................................................................................................................24200.0510010000000
................................................TGAGGCAACC-------ACAAATCTCAGAGACTA.......................................................................................................................................................................................................................................................................................................................................................................................................................27200.0510100000000
.................................AAAGGACGAAA-ATCTGAGGCAACC-------ACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................27200.0510000000100
...........................................................................................................................................TAAGATGTCACTAT-----AAAACGTA...................................................................................................................................................................................................................................................................................................................................22200.0510100000000
.............................................ATCTGAGGCAACC-------ACAAATC.................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000100000
...........................CCCCGCAAAGGACGAAA-ATCTGAGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.0510000000010
.............................................................................................................................................AGATGTCACTAT-----AAAACG.....................................................................................................................................................................................................................................................................................................................................18200.0510100000000
........................................................................................................................................................................................................................................................................................................................................................................................................TGCAG----------------------------------------ATTTGAG-AA-AACTAAAAAC...............................24200.0510000100000
..........................................................................................................................................................................TCAGAATTTCGCCCCACCCCCATCCGC....................................................................................................................................................................................................................................................................................................27200.0510010000000
.....................................................................................................................................................................ATATCTCAGAATTTCGCCCCACC.............................................................................................................................................................................................................................................................................................................23200.0510010000000
.................................................................................................................................................GTCACTAT-----AAAACGTATATCTCAGAATTT......................................................................................................................................................................................................................................................................................................................29200.0510100000000
.................................................................................................................................................GTCACTAT-----AAAACGTATATCTCAGAAA........................................................................................................................................................................................................................................................................................................................27200.0510000000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAG-AA-AACTAAAAACGCAGAATCAT.....................26200.0510000000100
............................................................................................................................................................................................................................................................................................................................................................G--------GACGAAAATCTGTT----GCATC----CACAA....................................................................................................25200.0510000000010
.................................................................................................................................................................................TTCGCCCCACCCCCATCCGCC...................................................................................................................................................................................................................................................................................................21200.0510010000000
..............................................................................................................................................................................................CATCCGCCCCCACAA----------------------------------------------------------------------------------------------------------------------------------------------AG--------GACG................................................................................................................................21200.0510000100000
............................................................................................................................................................................AGAATTTCGCCCCACCCCC..........................................................................................................................................................................................................................................................................................................19200.0510100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................TTGCAG----------------------------------------ATTTGAG-AA-AACTAAAAACGC.............................27200.0510000001000
........................................................................................................................................................................TCTCAGAATTTCGCCCCACCCCC..........................................................................................................................................................................................................................................................................................................23200.0510001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCAGAATCATAGATAATGACCATATC.....29200.0510100000000
.................................AAAGGACGAAA-ATCTGAGGCAACC-------C.......................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510000000010
.........................................................................................................................................................................................................................................................................................................................................................................................................GCAG----------------------------------------ATTTGAG-AA-AACTAAA..................................20200.0510000100000
............................CCCGCAAAGGACGAAA-ATCTGAGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510000000100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAATCATAGATAATGACCAT........22200.0510000000100
...............................................................................................................................................ATGTCACTAT-----AAAACGTATATCTCAGAA.........................................................................................................................................................................................................................................................................................................................28200.0510100000000
................................................................................................................................................................................TTTCGCCCCACCCCCATCCGCC...................................................................................................................................................................................................................................................................................................22200.0510010000000
...............................................................................................................................................................................ATTTCGCCCCACCCCCATCC......................................................................................................................................................................................................................................................................................................20200.0510010000000
............................CCCGCAAAGGACGAAA-ATCTGAGGCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.0510100000000
................................CAAAGGACGAAA-ATCTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000100
..............................................................................................................................................GATGTCACTAT-----AAAACGTATAT................................................................................................................................................................................................................................................................................................................................22200.0510100000000
..................................AAGGACGAAA-ATCTGAGGCAACC-------........................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510100000000
..................................................................................................................................................................................................................................................................................................................................................................................T----GCATC----CACAATATTGCAG----------------------------------------ATTTG...............................................24200.0510000000100
..................................................................................................................................................................................................................................................................................................................................................................................................CAATATTGCAG----------------------------------------ATTTGAG-AA-AA.......................................22200.0510000001000
...........................................................................GAGACTATTAAG------------------GCTAGAGTAACC....................................................................................................................................................................................................................................................................................................................................................................................24200.0510000100000
............................................................................................................................................................................AGAATTTCGCCCCACCCCCA.........................................................................................................................................................................................................................................................................................................20200.0510100000000
.........................................................................................................................................................................................ACCCCCATCCGCCCCCACAA----------------------------------------------------------------------------------------------------------------------------------------------AG--------....................................................................................................................................22200.0510100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................G-AA-AACTAAAAACGCAGAATC.......................21200.0510001000000
.....................................................................ATCTCAGAGACTATTAAG------------------GCTAGAGTAAC.....................................................................................................................................................................................................................................................................................................................................................................................29200.0510100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCAGAATCATAGATAATGAC...........23200.0510100000000
................................................................................................................................................................................TTTCGCCCCACCCCCATCCGCCC..................................................................................................................................................................................................................................................................................................23200.0510010000000
..............................................TCTGAGGCAACC-------ACAAATCTCAGAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................26200.0510010000000
......................................................................................................................................................................TATCTCAGAATTTCGCCCCACC.............................................................................................................................................................................................................................................................................................................22200.0510000100000
......................................................................TCTCAGAGACTATTAAG------------------GCTAGAGTA.......................................................................................................................................................................................................................................................................................................................................................................................26200.0510100000000
.................................................................................................................................................................................TTCGCCCCACCCCCATCCGCCCC.................................................................................................................................................................................................................................................................................................23200.0510010000000
..................................................................................................................................................................................TCGCCCCACCCCCATCCGCCCCCACAA----------------------------------------------------------------------------------------------------------------------------------------------..............................................................................................................................................27200.0510100000000
..................................................................................................................................................................................TCGCCCCACCCCCATCCGCA...................................................................................................................................................................................................................................................................................................20200.0510100000000
................................CAAAGGACGAAA-ATCTGAGGCAACC-------A.......................................................................................................................................................................................................................................................................................................................................................................................................................................26200.0510100000000
...........................................................................................................................................TAAGATGTCACTAT-----AAAAC......................................................................................................................................................................................................................................................................................................................................19200.0511000000000
..................................AAGGACGAAA-ATCTGAGGCAACC-------ACAA....................................................................................................................................................................................................................................................................................................................................................................................................................................27200.0510100000000
droWil2
TTTGG-------CACGCCCATTTCCGCCCCCGCAAATTAAACAA-AA----------------CTGATTTTCTCGGAAACTAAAAAA------------------GCTAAAGTCACCAAATTTAGTATGTATACTGGCTTAGTATG--CGC---GCAGAATACATATATTTTAGTATGTTGCCACGCCCACTTCCGCCTCCATAA----------------------------------------------------------------------------------------------------------------------------------------------TT--------TAGAAAAAACCGAT----TGGCT----CTTA-CAATTTTTTG--------------------------------------ACCATCG-CG-AACAAATTTGGCAGATTGATAAATCTTATCTATTTCTATCASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................................................................................................TTAGTATGTATACTGGCTTAGTATG--.....................................................................................................................................................................................................................................................................................................................................................25200.30601050
..............................................................................................................................................................................................................................................................................................................................................................................................................G--------------------------------------ACCATCG-CG-AACAAATTTGG..............................2150.20100010
..........................................................................................................................................................................................................................................................................................................................................................................................................TTTTG--------------------------------------ACCATCG-CG-AACAAAT..................................2170.14101000
..............................................................................ACTAAAAAA------------------GCTAAAGTCACC....................................................................................................................................................................................................................................................................................................................................................................................21120.08100001
..................................................................................AAAAA------------------GCTAAAGTCACCAAA.................................................................................................................................................................................................................................................................................................................................................................................20180.06101000
...........................................................................................................TAAAGTCACCAAATTTAGTATGTATAC...................................................................................................................................................................................................................................................................................................................................................................27200.05101000
......................................................................................................................AATTTAGTATGTATACTGGCT..............................................................................................................................................................................................................................................................................................................................................................21200.05101000
..........................................................................................................................TAGTATGTATACTGGCTTAGTATG--CG...................................................................................................................................................................................................................................................................................................................................................26200.05100010
droVir3
CGATA----------ACCTACTCCGTTTCCCAGCAATCGATAAAAATCGATATCAATA-------TC-----CTGTTTCTTGAGCAATTTTGGTATGTATTAAGAGCTAGAGTCACCAAACTTGATATGTTGCTT----CAAGAACATTAA---ATATATTAAGTATCTTTCA--TTTTAT----ACCTATCGCCACCTCCCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................CTACTCCGTTTCCCAGCAATCGATAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2630.331000000000000000000000000000000000010000000000000000000000000000
.................CTACTCCGTTTCCCAGCAATCGATA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2530.331000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................GTATCTTTCA--TTTTAT----ACCTATCGCC......................................................................................................................................................................................................................................................................................................26200.255000000000000000000000000004100000000000000000000000000000000000
..........................................................................................................CTAGAGTCACCAAACTTGATATGTTGC....................................................................................................................................................................................................................................................................................................................................................................27200.255000000000000000000000000010000010020100000000000000000000000000
.....................................................................................................AAGAGCTAGAGTCACCAAACTTGATA..........................................................................................................................................................................................................................................................................................................................................................................26200.204000000000000000000000000001000000011100000000000000000000000000
...................................................................................................................................................................GTATCTTTCA--TTTTAT----ACCTATCGCCA.....................................................................................................................................................................................................................................................................................................27200.204004000000000000000000000000000000000000000000000000000000000000
.........................TTTCCCAGCAATCGATAAAAATCGATATC...................................................................................................................................................................................................................................................................................................................................................................................................................................................29100.202000000000000000000000000002000000000000000000000000000000000000
......................................................................................................AGAGCTAGAGTCACCAAACTTGATATT........................................................................................................................................................................................................................................................................................................................................................................27200.153000000000000000000000000000210000000000000000000000000000000000
..........................................................................................................CTAGAGTCACCAAACTTGATATGTTG.....................................................................................................................................................................................................................................................................................................................................................................26200.153000000000000000000000000000010010000000100000000000000000000000
.........................................................................................................GCTAGAGTCACCAAACTTGATATGTTGC....................................................................................................................................................................................................................................................................................................................................................................28200.153000000000000000000000000011000010000000000000000000000000000000
....................................................................................................TAAGAGCTAGAGTCACCAAACTTGA............................................................................................................................................................................................................................................................................................................................................................................25200.153000000000000000000000000000000030000000000000000000000000000000
.........................TTTCCCAGCAATCGATAAAAATCGATA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................27100.101000000000000000000000000000000000001000000000000000000000000000
............................................................................................................AGAGTCACCAAACTTGATATGTTGCT...................................................................................................................................................................................................................................................................................................................................................................26200.102000000000000000000000000010100000000000000000000000000000000000
...................................................................................................................................................................GTATCTTTCA--TTTTAT----ACCTATCGC.......................................................................................................................................................................................................................................................................................................25200.102000000000000000000000000002000000000000000000000000000000000000
.........................................................................................................GCTAGAGTCACCAAACTTGATATGTTG.....................................................................................................................................................................................................................................................................................................................................................................27200.102000000000000000000000000000010001000000000000000000000000000000
.....................................................................................................AAGAGCTAGAGTCACCAAACTTGATC..........................................................................................................................................................................................................................................................................................................................................................................26200.102000000000000000000000000000000000100000000000000000000000000010
.............................................................................................................GAGTCACCAAACTTGATATGTTGCTT----..............................................................................................................................................................................................................................................................................................................................................................26200.102000000000000000000000000100000000010000000000000000000000000000
...........................................................................................................TAGAGTCACCAAACTTGATATGTTGCT...................................................................................................................................................................................................................................................................................................................................................................27200.102000000000000000000000000000000000010010000000000000000000000000
........................................................................................................AGCTAGAGTCACCAAACTTGATATGT.......................................................................................................................................................................................................................................................................................................................................................................26200.102000000000000000000000000001000000000100000000000000000000000000
..........................................................................................................CTAGAGTCACCAAACTTGAT...........................................................................................................................................................................................................................................................................................................................................................................20200.102000000200000000000000000000000000000000000000000000000000000000
..........................TTCCCAGCAATCGATAAAAATCGATATC...................................................................................................................................................................................................................................................................................................................................................................................................................................................28110.091000000000000000000000000000100000000000000000000000000000000000
........................................................................................................AGCTAGAGTCACCAAACTTGATATGTT......................................................................................................................................................................................................................................................................................................................................................................27200.051000000000000000000000000000000010000000000000000000000000000000
.................................................................................................TATTAAGAGCTAGAGTCACCAAACTT..............................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000000000000000100000000000000000000000
....................................................................................................TAAGAGCTAGAGTCACCAAACTTGATG..........................................................................................................................................................................................................................................................................................................................................................................27200.051000000000010000000000000000000000000000000000000000000000000000
....................................................................................................................................................................TATCTTTCA--TTTTAT----ACCTATCGC.......................................................................................................................................................................................................................................................................................................24200.051001000000000000000000000000000000000000000000000000000000000000
....................................................................................................TAAGAGCTAGAGTCACCAAACTTGATA..........................................................................................................................................................................................................................................................................................................................................................................27200.051001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................CTAGAGTCACCAAACTTGATATG........................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000010000000000000000000000000000000000
...........................................................................................................TAGAGTCACCAAACTTGATATGTTG.....................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000000010000000000000000000000000000000
.......................................................................................................................................................................CTTTCA--TTTTAT----ACCTATCGCCACCTC.................................................................................................................................................................................................................................................................................................27200.051001000000000000000000000000000000000000000000000000000000000000
......................................................................................................AGAGCTAGAGTCACCAAACTTGATAT.........................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000100000000000000000000000000000000000000
...........................................................................................................................................................................CA--TTTTAT----ACCTATCGCCACCTCC................................................................................................................................................................................................................................................................................................24200.051001000000000000000000000000000000000000000000000000000000000000
.................................................................................................TATTAAGAGCTAGAGTCACCAAACTTGA............................................................................................................................................................................................................................................................................................................................................................................28200.051000000001000000000000000000000000000000000000000000000000000000
....................................................................................................TAAGAGCTAGAGTCACCAAACT...............................................................................................................................................................................................................................................................................................................................................................................22200.051000000010000000000000000000000000000000000000000000000000000000
.....................................................................................................AAGAGCTAGAGTCACCAAACTTGATAT.........................................................................................................................................................................................................................................................................................................................................................................27200.051000000000000000000000000001000000000000000000000000000000000000
.................................................................................................TATTAAGAGCTAGAGTCACCAAACT...............................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000000000000100000000000000000000000000
......................................................................................................AGAGCTAGAGTCACCAAACTTGAT...........................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000000000010000000000000000000000000000000
........................................................................................................AGCTAGAGTCACCAAACTTGATATG........................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000010000000000000000000000000000000000000
...........................................................................................................TAGAGTCACCAAACTTGATATGTTGC....................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000001000000000000000000000000000000000000
.........................................................................................................GCTAGAGTCACCAAACTTGATATG........................................................................................................................................................................................................................................................................................................................................................................24200.051001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................CTAGAGTCACCAAACTTGATATGTTGCT...................................................................................................................................................................................................................................................................................................................................................................28200.051000000001000000000000000000000000000000000000000000000000000000
.........................................................................................................GCTAGAGTCACCAAACTTGATATGTT......................................................................................................................................................................................................................................................................................................................................................................26200.051000010000000000000000000000000000000000000000000000000000000000
......................................................................................................AGAGCTAGAGTCACCAAACTTGATATG........................................................................................................................................................................................................................................................................................................................................................................27200.051000000000000000000000000000001000000000000000000000000000000000
.........................................................................................................GCTAGAGTCACCAAACTTGATATGT.......................................................................................................................................................................................................................................................................................................................................................................25200.051000001000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................TTTAT----ACCTATCGCCACCTCCC...............................................................................................................................................................................................................................................................................................22200.051000010000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................TATCTTTCA--TTTTAT----ACCTATCGCCACCT..................................................................................................................................................................................................................................................................................................29200.051001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................CTAGAGTCACCAAACTTGATATGTTGA....................................................................................................................................................................................................................................................................................................................................................................27200.051000000000000000000000000000000000010000000000000000000000000000
......................................................................................................AGAGCTAGAGTCACCAAACTTGATA..........................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000001000000000000000000000000000000000
....................................................................................................TAAGAGCTAGAGTCACCAAACTTGAT...........................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000000010000000000000000000000000000000
..............................................................................................................AGTCACCAAACTTGATATGTTGCT...................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000001000000000000000000000000000000000000
droMoj3
CGAA------------------------------AACCAGTAAT-AA----------------ATGTATATCTCAGACATCTTTATA------------------GCTAGAGTTATAAAATTTTTAATGTAGTTTTA-----TATGTACTTTATGGAACTTCGATTTTTATCAAAATTTACC------------------------------------------------------------------------------------------------------------------------CCCCACC----------------------------------------------------CTAAATTCAC----TCCCT----CACC--------------------CACATATTTCTAAAATGAGTATTTCAAATACT--AG----------AGAC----------------------------TTGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
CGCA------------------------------AATCGAGAAA-GT-----------------CACATATCTCCCACAATTGTAAG------------------GCTAAAGTCACTAAATTTGGTTAGTAGGTTG-TTGGCGATGTCCTTTAAA--GACGGCA-------------TATACGACGCCCACCTCCGCCGCCCCAA----------------------------------------------------------------------------------------------------------------------------------------------G------------------GCCTT----TCTTT----CACAAT-------------------------------------------------T--TG-TA-AGCTAAAACCACAAAATTTTA------------------AASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
TCCGA-------G---------------------------------------------TGAACTCGTGGATCTTAAAGACTATAAG-------------------CTCAGTGCTCTTAATTTAGGCACGGTGACTCCTGCAAATAA--AAC---GCAGGCCCCGTTTGTTTCAAGTTTGTGCCACGCCCCCGACCGCCCCCAAAA----------------------------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
ATC---------------------------------------------------------------------TCGCAGAATAT-------------------------AGAGCTATCCGATTTGGA-CTTGGCCTCG--TAAGGTATCCGC---AAAGATCACGTTTGTGTCAACATTTTGCCACGCCCACTCCCGCCCCCAAAA----------------------------------------------------------------------------------------------------------------------------------------------C------------AGAAATCTGGT-T--GTAGC----CCCAGTTCGTTAA--------------------------------------AGTTT--TG-GA-AATTGCAACCAGACAATC-----------------------SizeHit CountTotal NormTotal
No Reads
droKik1
TTAGC-------CATGTCCGCCTGTCCGCCTGTCCGTTA------GTG----------TGAAGCAACATATCTCAGAGAATATAAGA------------------GCTAGAGCTATTAAAATTGGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
AAAAT-------CG-GTTAACTCCACCATATAGCTGCCATACAA-AA--------------------------------------------------------------------------------------------------------------------------------------------------------------GATC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAATATATATATATAAATAATGAAAAAAATTATAASizeHit CountTotal NormTotal
No Reads
droEle1
TTCGCTCCTACTCACGCCCACTTTTACACCCACAAATCGTGAAA-ATATTT----A-----------------------------------------------------------------------------------------------------------------------------------------------------CTGTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTCTG--AGACA-TGTTAAAGCGACGGTATTCG--------------ACTCTGGSizeHit CountTotal NormTotal
No Reads
droRho1
TCCGT-------CT-GTCCGTCTGTCCGTCCGTA------------------------TGAACGCTGAGATCTCGGAAACTATAAAA------------------GCTAGAAGATTGGCATTTTGCATGCAGATTCTAGGA--GTTCCTAC---GCAGCGCAAGTTTGTTTCAAAAAGGTGCCACGCCCCCTTTAACACCCACAA----------------------------------------------------------------------------------------------------------------------------------------------TC--------G-CTTATA-------------------TACGATTTTAAAAA-----TTTAA---------------------------ATTTTTCGG-AA-AAGTAAAAATGCAGTTTTATTGTGTTTATCAATACCTATCGSizeHit CountTotal NormTotal
No Reads
droBia1
GGTGC-------CACGCCCACTCTAACGCCTACAATCCGAGAAA-AT--------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTAGCGCCTAGAGTTTTTAAGATAGAAACAAAATTTTGACTGAAATGCGTT-------------------------TGTCTCATTAAAACCTATCGACTAACCTAAAAAAAATGTGTCACGCACTCTCTAGCCCCCACAAACGATTAAAACGCTTAAATCTGTC----TGCCGCACACATAACATT------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
CTAGC-------CATGTCCGTCTGTCCGTCTGTA------------------------TGAACGCTGAGATCTCAGAAACTACAAAA------------------GCTAGAAGGTTGAGATTTTCCACACATATTCTTTGG--CTTCCTAC---GCAGCGCAAGTTTATTTCAGCCA---CTAACGCTTACAA--TCGCCCACTA----------------------------------------------------------------------------------------------------------------------------------------------AC--------GATTTTAAAATGGGTCCTGCACC----CACATCTTTAAAG----------------------------------------ATTTCCG-AG-AAGTATAAATGCAATTTTGTTGTGTATATTTATATCTATCGSizeHit CountTotal NormTotal
No Reads
droEug1
CTAGC-------CACGCCCACCCTAACGCCCACAAAACCCGGAA-AACCAAAACTGC--------GAAAATCTCGGGACATATAAAA------------------GCTAGAAAGTTAGGCTTAAAAACACGTATTAAAGA--GATGCCGCT---GCAACTTGCCACTC-------ATCCGGCCACACCCACTCTAACGCCCACAA----------------------------------------------------------------------------------------------------------------------------------------------AC--------CGCGAAAAACTGTG----GCGTC----TATAATATTATTATAAAAATTAAA----------------------------------------AATATATTTTGCCTCCTAAAAGCTAATGACTGTGCATGTTASizeHit CountTotal NormTotal
No Reads
dm3
CAG----------------------------------------------------------------AGTTCTCAGAAACTATTGAA------------------GCTAGAAAGATTAA-----GCATACAGGTTC--TAGAGACATTAGCGC-----AGAGCA-------------------------------ACGCCCACAA----------------------------------------------------------------------------------------------------------------------------------------------AG--------CGCCTAAATCTGCC----ACGCC----CACAATTTTGAAAAATGTTTTGAT-----------------ATC------AT---T--TG-TCAAACAAAAAAC-------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................................................................................................................TAA-----GCATACAGGTTC--TAGAGACATT.....................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................C--TAGAGACATTAGCGC-----AGAGCA-------------------------------ACGCCCACAA----------------------------------------------------------------------------------------------------------------------------------------------A.............................................................................................................................................3311.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................TTC--TAGAGACATTAGCGC-----AGAGCA-------------------------------ACG...................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................CAGAAACTATTGAA------------------GCTAGAAAGAT.....................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................TCTCAGAAACTATTGAA------------------GCTAGAAAGAT.....................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................TTAGCGC-----AGAGCA-------------------------------ACGCCCACAA----------------------------------------------------------------------------------------------------------------------------------------------AG--------CGCC................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................ATTTTGAAAAATGTTTTGAT-----------------A...............................................................2150.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................GCATACAGGTTC--TAGAGA.........................................................................................................................................................................................................................................................................................................................................................1860.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................C----ACGCC----CACAATTTTGAAAAAT.........................................................................................2270.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................CTGCC----ACGCC----CACAATTTTG...............................................................................................2080.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
droSim2
TTCGC-------CACGCCCTCTTTCACGCCTACAAACCGCCCAA-AG--------------------------------------------------------------------------------------------------------------------------------------------------------------CTTACACGCCCACATTTTTGCAAAATGT---GACATTTTATCACATTTTTCTT-------------------------TGTCTTGTAAATATTCATCGATCTACCAAAAAA---TTTGCCCCGCC------------CACAGGC--------C-CCAAAAACTTCC----GCGCC----CACATTTTTGCAA----------------------------------------A---------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
ATAAC-------CATGCCCACTCTAACGCCCACAAACCACCCAA-AA--------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCCACGACCACATTTTTTAAAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
TT-GC-------CACGCCCACTCTAACGCCCACAAACCGCCCAA-AA--------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCGACGCCCACATTTTTGAAAAATGTTTTGAAATTTGTTCATTTTTGTATT-------------------------AGTCTTGTAATTTTCTTTCTATTTACCAAAAAACTTTTTGCCACGCCCACTCTAACGCCCACAAAC--------CGCCCAAAACTGCC----ACGTC----CACACTTTTGAAAAATGTTTTGA--------------------------------------------------------------------------------AASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................CTCTAACGCCCACAAACCGCCCAA-AA--------------------------------------------------------------------------------------------------------------------------------------------------------------CT..........................................................................................................................................................................................................................................................................................28200.5511011000000000
......................................................................................................................................................................................................................................................................................................................AAAAAACTTTTTGCCACGCCC..............................................................................................................................................................21200.45909000000000
.................................................................................................................................................................................................................................................................................................................................TGCCACGCCCACTCTAACGCCCACAA..............................................................................................................................................26200.35707000000000
.........................................................................................................................................................................................................................................................TTTTGTATT-------------------------AGTCTTGTAATTTTC...............................................................................................................................................................................................24200.10200200000000
.................................................................................................................................................................................................................................................................................................................TTACCAAAAAACTTTTTGCCACGCCCAC............................................................................................................................................................28200.10202000000000
................................CAAACCGCCCAA-AA--------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCGACGCC..................................................................................................................................................................................................................................................................................24200.05101000000000
..................................................................................................................................................................................................................................................................................................................TACCAAAAAACTTTTTGCCACGC................................................................................................................................................................23200.05101000000000
.....................................................................................................................................................................................................................................................................................................................................................CCACAAAC--------CGCCCAAAACTGCC----ACGTC----.........................................................................................................27200.05101000000000
.......................TAACGCCCACAAACCGCCCAA-AA--------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCGA......................................................................................................................................................................................................................................................................................29200.05101000000000
....................................................................................................................................................................................................................................................................................................................................................CCCACAAAC--------CGCCCAAAACTGCC----ACGTC----.........................................................................................................28200.05101000000000
...................................................................................................................................................................................................................................................................................................................ACCAAAAAACTTTTTGCC....................................................................................................................................................................18200.05100100000000
..............................................................................................................................................................................................................TGCGACGCCCACATTTTTGA.......................................................................................................................................................................................................................................................................20200.05100000010000
..................................................................................................................................................................................................................................................................................................................TACCAAAAAACTTTTTGCCACGCCC..............................................................................................................................................................25200.05101000000000
......................................................................................................................................................................................................................................................................................................................................................CACAAAC--------CGCCCAAAACTGCC----ACGTC----CA.......................................................................................................28200.05101000000000
droEre2
GTTGC-------CACTCCCACTCTAACGCCCACAAACCACCCAA-AA--------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCAACGCTCACACTTTTAAAAAATGTT---G----------------TCTTCTTTTTAAATTTTTTTTATATAATATATCTTGTAAATATCTCTAAATTTGCCAACAAATTTTTTGCCACGGCCACTCCAACGCCCCCAAAC--------CGCCCAAAACTGTC----TCGTC----CACACTTTTGAAAAACGCTGTAA---------------------------------------------TA--------TTTTTTAATTTTTGAATATATCTTGAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................CACAAACCACCCAA-AA--------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCAACGC...................................................................................................................................................................................................................................................................................2520.5011000000

Generated: 06/08/2015 at 03:06 PM