ID:

dpe_736

 Coordinate:

scaffold_13:375078-375144 -

 Confidence:

confident

 Class:

Mirtron

 Genomic Locale:

intron

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-15.7 -15.5 -15.5

Flybase annnotation

intron [Dper\GL12970-in]; CDS [Dper\GL12970-cds]; CDS [Dper\GL12970-cds]

No Repeatable elements found

Sense Strand Reads

AAGCTGCGGGACGCCGGCTGCCATGCCGTCCTCTTCCTGAACATACCCAGGTGCGAAAGGAGAATGAGCTATAGATTTTGTTCGATGAGGCGATCTAAACACTTTCCCTTTCCGCAGCTATGGCGGCGGCACCCACCCGTGGAACGACTCGTTCGGGGCGACGAAGC

**************************************************.(((((((((.(((.......((((((..(((......)))))))))......)))))))).)))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total V057

head

 V111

male body		 V050

head

 M042

female body

 V042

embryo

 M021

embryo
..................................................GTGCGAAAGGAGAATGAGCTAT............................................................................................... 22 0 1 781.00 781 312 380 84 5 0 0
..................................................GTGCGAAAGGAGAATGAGCTATAG............................................................................................. 24 0 1 353.00 353 223 38 88 4 0 0
..................................................GTGCGAAAGGAGAATGAGCTATAGA............................................................................................ 25 0 1 217.00 217 124 61 28 3 1 0
..................................................GTGCGAAAGGAGAATGAGCTATA.............................................................................................. 23 0 1 178.00 178 107 40 28 2 0 1
..................................................GTGCGAAAGGAGAATGAGCTA................................................................................................ 21 0 1 131.00 131 56 63 11 1 0 0
...............................................................................................TAAACACTTTCCCTTTCCGCAGT................................................. 23 1 1 114.00 114 60 15 22 14 3 0
...............................................................................................TAAACACTTTCCCTTTCCGCAG.................................................. 22 0 1 92.00 92 14 3 8 61 5 1
..................................................GTGCGAAAGGAGAATGAGCT................................................................................................. 20 0 1 43.00 43 14 26 3 0 0 0
...............................................................................................TAAACACTTTCCCTTTCCGCA................................................... 21 0 1 11.00 11 2 0 0 9 0 0
..................................................GGGCGAAAGGAGAATGAGCTAT............................................................................................... 22 1 1 10.00 10 9 0 1 0 0 0
...............................................................................................TAAACACTTTCCCTTTCCGCAGTT................................................ 24 1 1 9.00 9 0 2 1 6 0 0
...............................................................................................TAAACACTTTCCCTTTCCGCAGA................................................. 23 1 1 7.00 7 1 0 4 2 0 0
..................................................GTGCGAAAGGCGAATGAGCTAT............................................................................................... 22 1 1 7.00 7 6 0 1 0 0 0
..................................................GTGCGAAAGGAGAATGAGCTATAGT............................................................................................ 25 1 1 6.00 6 4 1 1 0 0 0
..................................................GTGCGAAAGGAGAATGAGCTATT.............................................................................................. 23 1 1 6.00 6 3 3 0 0 0 0
..................................................GTGCGAAAGGAGAATGAGC.................................................................................................. 19 0 1 6.00 6 1 3 2 0 0 0
..................................................GTGCGAAAGGAGAATGCGCTAT............................................................................................... 22 1 1 5.00 5 4 0 1 0 0 0
..................................................GAGCGAAAGGAGAATGAGCTATAG............................................................................................. 24 1 1 5.00 5 3 0 2 0 0 0
..................................................GTGCGAAAGGAGAATGAGCTATAA............................................................................................. 24 1 1 4.00 4 4 0 0 0 0 0
..................................................GCGCGAAAGGAGAATGAGCTAT............................................................................................... 22 1 1 4.00 4 3 0 1 0 0 0
..................................................GGGCGAAAGGAGAATGAGCTATAG............................................................................................. 24 1 1 4.00 4 4 0 0 0 0 0
..................................................GTGCAAAAGGAGAATGAGCTAT............................................................................................... 22 1 1 4.00 4 3 0 1 0 0 0
..................................................GTGCGAAAGGAGAATGAGCTATAGAA........................................................................................... 26 1 1 4.00 4 3 1 0 0 0 0
...................................................TGCGAAAGGAGAATGAGCTATAGA............................................................................................ 24 0 1 4.00 4 2 2 0 0 0 0
..................................................GTGCGAAAGGCGAATGAGCTATAG............................................................................................. 24 1 1 3.00 3 3 0 0 0 0 0
..................................................GTGCGAAAGGAGCATGAGCTATA.............................................................................................. 23 1 1 3.00 3 3 0 0 0 0 0
..................................................GAGCGAAAGGAGAATGAGCTA................................................................................................ 21 1 1 3.00 3 3 0 0 0 0 0
..................................................GTGCGCAAGGAGAATGAGCTATAG............................................................................................. 24 1 1 3.00 3 1 0 2 0 0 0
..................................................GGGCGAAAGGAGAATGAGCTATAGA............................................................................................ 25 1 1 3.00 3 3 0 0 0 0 0
..................................................GTGCGAAAGGAGCATGAGCTATAG............................................................................................. 24 1 1 3.00 3 3 0 0 0 0 0
...............................................................................................TAAACACTTTCCCTTTCCGC.................................................... 20 0 1 3.00 3 0 0 0 3 0 0
..................................................GTGCGAAAGGAGAATGAGCTAC............................................................................................... 22 1 1 3.00 3 3 0 0 0 0 0
................................................................................................AAACACTTTCCCTTTCCGCAG.................................................. 21 0 1 3.00 3 0 0 0 3 0 0
..................................................GTGCGAAAGGGGAATGAGCTATAGA............................................................................................ 25 1 1 3.00 3 2 0 1 0 0 0
..................................................GTGCGGAAGGAGAATGAGCTAT............................................................................................... 22 1 1 3.00 3 2 1 0 0 0 0
..................................................GTGCGAAAGGATAATGAGCTAT............................................................................................... 22 1 1 3.00 3 2 1 0 0 0 0
..................................................GTGCGAAGGGAGAATGAGCTAT............................................................................................... 22 1 1 3.00 3 3 0 0 0 0 0
..................................................GTGCGAAAGGAGAACGAGCTAT............................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0
..................................................GTGAGAAAGGAGAATGAGCTAT............................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0
..................................................GTGCGAAAGGAGAATAAGCTATAG............................................................................................. 24 1 1 2.00 2 2 0 0 0 0 0
..................................................GGGCGAAAGGAGAATGAGCTCT............................................................................................... 22 2 1 2.00 2 2 0 0 0 0 0
..................................................GTGCGAAAGGAGAATGAGCTATCG............................................................................................. 24 1 1 2.00 2 1 0 1 0 0 0
..................................................GTGAGAAAGGAGAATGAGCTATAG............................................................................................. 24 1 1 2.00 2 1 1 0 0 0 0
..................................................GTGCGAAAGGAGAATGAGCTATAC............................................................................................. 24 1 1 2.00 2 2 0 0 0 0 0
................................................................................................AAACACTTTCCCTTTCCGCAGT................................................. 22 1 1 2.00 2 1 0 0 1 0 0
..................................................GTGCGAAAGGAGAATGAGCTT................................................................................................ 21 1 1 2.00 2 1 1 0 0 0 0
..................................................GTGCGAAAGGAGAATGAGCTCT............................................................................................... 22 1 1 2.00 2 0 2 0 0 0 0
...............................................................................................TAAACGCTTTCCCTTTCCGCAGT................................................. 23 2 1 2.00 2 1 0 1 0 0 0
..................................................GTGCGAAAGGAGAATGAG................................................................................................... 18 0 1 2.00 2 1 1 0 0 0 0
..................................................GAGCGAAAGGAGAATGAGCTAT............................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0
..................................................GGGCGAAAGGAGAATGAGCTATA.............................................................................................. 23 1 1 2.00 2 2 0 0 0 0 0
..................................................GTGCGAAAGGAGAATGCGCTCT............................................................................................... 22 2 1 2.00 2 2 0 0 0 0 0
..................................................GTGCGAAAGGAGCATGAGCTAT............................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0
..................................................GTGCGAGAGGAGAATGAGCTATAG............................................................................................. 24 1 1 2.00 2 2 0 0 0 0 0
..................................................GTTCGAAAGGAGAATGAGCTAT............................................................................................... 22 1 1 2.00 2 0 2 0 0 0 0
.................................................CGTGCGAAAGGAGAATGAGCTATAG............................................................................................. 25 1 1 2.00 2 1 0 1 0 0 0
...........................................................................TTTTGTTCGATGAGGCGATC........................................................................ 20 0 1 2.00 2 2 0 0 0 0 0
..................................................GTGCGCAAGGAGAATGAGCTAT............................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0
..................................................GTGCGAAAGGAGAATGCGCTATAG............................................................................................. 24 1 1 2.00 2 2 0 0 0 0 0
..................................................GTGCGAAAGGAGAATGAGCTCTA.............................................................................................. 23 1 1 2.00 2 2 0 0 0 0 0
..................................................GGGCGAGAGGAGAATGAGCTATAGA............................................................................................ 25 2 1 2.00 2 1 0 1 0 0 0
..................................................GTGCGAAAGGCGCATGAGCTATAG............................................................................................. 24 2 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAATGGAGAATGAGCTATAG............................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0
..................................................CTGCGAAAGGTGAATGAGCTATAGA............................................................................................ 25 2 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGACAATGAGCT................................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAATGGGGTATGAGCTATAG............................................................................................. 24 3 1 1.00 1 1 0 0 0 0 0
..................................................GCGCGAAAGGAGAATGAGCTA................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0
..................................................GCGCGAAAGGAGAATGAGCTATA.............................................................................................. 23 1 1 1.00 1 0 0 1 0 0 0
..................................................GTGCGGAAGGAGAATGAGCTACA.............................................................................................. 23 2 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGAGAATGCGCT................................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGAGAGTGAGCTATAG............................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................TAAACACTTTCCCTTTCCGCAAT................................................. 23 2 1 1.00 1 0 0 0 1 0 0
..................................................GTGCGAAAGGAGAATGAGCTATAGAAA.......................................................................................... 27 2 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGACTATGAGCT................................................................................................. 20 2 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGAGAATTAACTAT............................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
...............................................................................................TTAACACTGTCCCTTTCCGCAGA................................................. 23 3 1 1.00 1 1 0 0 0 0 0
..................................................GTGCCATAGGAGAATGAGCTAT............................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGAGAATGTGCTAT............................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0
..................................................GTGCGAAAGGAGCATAAGCT................................................................................................. 20 2 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGAGAATGAGCTATAT............................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGCGAATGCGCTATAGA............................................................................................ 25 2 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGTGAATGTGCTAT............................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
...............................................................................................TAAACACTTTCCATTTCCGCAGT................................................. 23 2 1 1.00 1 1 0 0 0 0 0
...............................................................................................TAAACACTATCCCTTTCCGCA................................................... 21 1 1 1.00 1 0 0 0 1 0 0
..................................................GTCCGAAAGGAAGATGAGCTA................................................................................................ 21 3 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGCGACTGAGCTCT............................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0
..................................................GGGCGAAAGGAGTATGAGCTATTG............................................................................................. 24 3 1 1.00 1 1 0 0 0 0 0
..................................................GTGGGAAAGGAGAATGAGCTATAG............................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGAGCATGAGCT................................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0
..................................................GAGCGAAAGGAGAATGTGCTATAG............................................................................................. 24 2 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGCGAATGCGCTATA.............................................................................................. 23 2 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGCAAGGAGAATCAGCTAT............................................................................................... 22 2 1 1.00 1 0 0 1 0 0 0
...............................................................................................TAAACAGTTTCCCTTTCCGCAG.................................................. 22 1 1 1.00 1 0 0 1 0 0 0
..................................................GTGCGAAAGGAGAAAGAGCTATT.............................................................................................. 23 2 1 1.00 1 1 0 0 0 0 0
..................................................GGGGGAAAGGAGAATGAGCTAT............................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGCGAATGAGCTCTAG............................................................................................. 24 2 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAACGAGTATCAGCTAT............................................................................................... 22 3 1 1.00 1 0 0 1 0 0 0
..................................................GCGCGAAAGGAGCATGAGCTATAGA............................................................................................ 25 2 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGAGAATGAGCTAGA.............................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGAGTATGAGCTAT............................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0
..................................................GAGCGAAAGGGGAATGAGCTATAG............................................................................................. 24 2 1 1.00 1 1 0 0 0 0 0
..................................................GAGCGGAAGGATAATGAGCTAT............................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGACAGGAGAATGTGTTAT............................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGCGAATGAGATATAG............................................................................................. 24 2 1 1.00 1 1 0 0 0 0 0
..................................................GTGCAAAAGGAGAATGGGCTAT............................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..................................................GAGCGAAAGGAGAATGAGCTACAG............................................................................................. 24 2 1 1.00 1 1 0 0 0 0 0
..................................................GCGCGAAAGGAGAATGAGCTATAG............................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0
..................................................GGGCGAAAGGAGAATGAGCT................................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAGGGAGACTGAGCTATCG............................................................................................. 24 3 1 1.00 1 0 0 1 0 0 0
..................................................GTGCGAAAGGAGATTGAGCTA................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGAGAATGAGCTATC.............................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAACGGCGAATGCGCTATAG............................................................................................. 24 3 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGCGAATGACCGAT............................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGACAGGAGAATGAGCTAT............................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0
..................................................GTGCCAACGGAGAATCAGCTAT............................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGACAGGAGAATGAGCTATCG............................................................................................. 24 2 1 1.00 1 1 0 0 0 0 0
..................................................ATGCGCAATGAGAATGAGCTATAGA............................................................................................ 25 3 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGATACTGAGCTATC.............................................................................................. 23 3 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGAGAATGAGCTAG............................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0
..................................................GGGCGAACGGAGAATGAGCGATAGA............................................................................................ 25 3 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGAGACTGAGCTAT............................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGGAACGACAATGAGCTAT............................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGCAAGGAGAATGCGCTATAC............................................................................................. 24 3 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGTGAATGAGCTAT............................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0
...........................................................................TTTTGTTCGATGAGGCGAT......................................................................... 19 0 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGGGAATGAGCTAT............................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGACTATGAGCTATAG............................................................................................. 24 2 1 1.00 1 1 0 0 0 0 0
...............................................................................................TAAACACTGTCCCTTTCCGCAG.................................................. 22 1 1 1.00 1 0 0 0 1 0 0
..................................................GGGCGAAAGGCGAATGAGCTATCG............................................................................................. 24 3 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGAGGATGTGCTAT............................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGAGAATGTGCTATCG............................................................................................. 24 2 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGATAGGAGAATGAGCTAT............................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................GAGCGAAAGGAGTATGAGCTATC.............................................................................................. 23 3 1 1.00 1 1 0 0 0 0 0
..................................................GGGCGAATGGAGAATGAGCTAT............................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGCAGCATGAGCTAT............................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..................................................GCGCGAAAGGCGCATGAGCTATAG............................................................................................. 24 3 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAGAGGAGCATGAGCTAT............................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGAGAATGAGATCTTG............................................................................................. 24 3 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGAGGATGAGCTATTGA............................................................................................ 25 2 1 1.00 1 0 0 1 0 0 0
..................................................GTGCGAAAGGAGAATGCGCTA................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGAGAATCAGCTATAGA............................................................................................ 25 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAAGAGAATGAGCTATAG............................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0
..................................................GGGCGAAAGGAGTATGTGCTATA.............................................................................................. 23 3 1 1.00 1 1 0 0 0 0 0
..................................................GGGCGAAAGGAGAATGAGCTA................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0
..................................................GTACGAAAGGAGAATGAGCTGTAG............................................................................................. 24 2 1 1.00 1 0 1 0 0 0 0
..................................................GTGCGAAAGGAGATTGAGATATAGA............................................................................................ 25 2 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAACGGAGAATGAGCTATAGA............................................................................................ 25 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................TAAAAACTTTCCCTTTCCGCAGT................................................. 23 2 1 1.00 1 0 0 1 0 0 0
...............................................................................................TAAGCACTTTCCCTTTCCGCAGT................................................. 23 2 1 1.00 1 1 0 0 0 0 0
..................................................GCGCGAAAGGAGAATGAGCTATAGA............................................................................................ 25 1 1 1.00 1 1 0 0 0 0 0
..................................................ATGCGAAAGGAGAATGAGCTAT............................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................GGGCGTAAGGAGAATGAGCTAT............................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..................................................GTTCGAAAGGAGAATGAGCTATA.............................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0
..............................................................AACGAGCTATAGAGTTCGTTCG................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0
..................................................GGGCGAAAGGAGAATGCGCTATTG............................................................................................. 24 3 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGACAGGAGAATGCGATAT............................................................................................... 22 3 1 1.00 1 0 0 1 0 0 0
..................................................TTGCGAAAGGAGAATGAGCTATAG............................................................................................. 24 1 1 1.00 1 0 0 0 1 0 0
..................................................GTGAGAACGGCGAATGAGCTATAG............................................................................................. 24 3 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGAGAATGATCTA................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0
..................................................GAGCGAAAGGAGAATGAGCTATAGT............................................................................................ 25 2 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGGGAATGAGCTA................................................................................................ 21 1 1 1.00 1 0 0 1 0 0 0
...............................................................................................TAAACAATTTCCCTTTCCGCAG.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGAGAATGAGCTCTTG............................................................................................. 24 2 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGAGAATGAGCTGTT.............................................................................................. 23 2 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGAGGATGAGCTAT............................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGAGGATGAGCTATAGA............................................................................................ 25 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................TAAACACTTTCCCTTTCCTCAA.................................................. 22 2 1 1.00 1 0 0 0 1 0 0
..................................................GTGCGAAAGGAGAATGAGCGATAG............................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGAGACTGAGCTATA.............................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0
..................................................ATGCCAACGGAGAATGAGCTATAG............................................................................................. 24 3 1 1.00 1 1 0 0 0 0 0
................................................................................................AAACACTTTCCCTTTCCGCAGTT................................................ 23 1 1 1.00 1 0 0 0 1 0 0
...............................................................................................TAAAAAATTTCCCTTTCCGCAGT................................................. 23 3 1 1.00 1 1 0 0 0 0 0
..................................................GTACGAAAGGAGAATGAGCTA................................................................................................ 21 1 1 1.00 1 0 0 1 0 0 0
..................................................GTGAGAAAGGAGCATGAGCTAT............................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGAGGATGAGCTATA.............................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAGAGGAGGATGAGCTAT............................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..................................................GGGCGGAAGGAGTATGAGCTATAG............................................................................................. 24 3 1 1.00 1 1 0 0 0 0 0
...................................................TGCGAAAGGAGAATGAGCT................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0
..................................................GTGTGAAAGGAGAATGAGCTATAG............................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGGTAATGCGCTATAG............................................................................................. 24 3 1 1.00 1 0 0 1 0 0 0
..................................................GTGCGGAAGGAGAATGAGGTATA.............................................................................................. 23 2 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGAGCCTGGGCTAT............................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0
..................................................GTGAGAAAGGAGAATGAGCTATCT............................................................................................. 24 3 1 1.00 1 1 0 0 0 0 0
..................................................GTGCAAAAGGAGTATGAGCTATAG............................................................................................. 24 2 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGACAATGAGCTAT............................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................TAACCACTTTCCCTTTCCGCAGT................................................. 23 2 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGTTAATGAGCTAT............................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..................................................GTGTGAAAGGAGAATGAGCTAT............................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0
..................................................GGGCGAAAGGAGTATGAGCTAT............................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGTGAATAAGCTAT............................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAACGAGAATGAGCTATAG............................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGAGCATGAGCTATCT............................................................................................. 24 3 1 1.00 1 1 0 0 0 0 0
..................................................GTGAGAAACGAGAATGAGCTAT............................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGAGCATGATCTATAG............................................................................................. 24 2 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGAGGATGAGCTA................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGAGAATGAGCTACAGA............................................................................................ 25 1 1 1.00 1 0 1 0 0 0 0
..................................................GTGCGAAAGGTGACTGCGCTATAGA............................................................................................ 25 3 1 1.00 1 1 0 0 0 0 0
..................................................GTGGGAAAGGAGAATGCGCTAT............................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAATGAGAATGCGCTAT............................................................................................... 22 2 1 1.00 1 0 0 1 0 0 0
..................................................GTGGGAAAGGCGAATGAGCTCTAG............................................................................................. 24 3 1 1.00 1 0 0 1 0 0 0
..................................................GCGAGAAAGGAGAATGAGCTCT............................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGGAAGGGGAATGAGCTAT............................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
.................................................CGTGCGAAAGGAGAATGAGCTAT............................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGAGAATGAGCTACA.............................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGGGAATGAGCTATAG............................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0
..................................................GAGCGATGGGAGAATGAGCTATAG............................................................................................. 24 3 1 1.00 1 1 0 0 0 0 0
..................................................ATGCGAAAGGAGAATGACCTATAG............................................................................................. 24 2 1 1.00 1 1 0 0 0 0 0
...................................................TGCGAAAGGAGAATGAGCTATAA............................................................................................. 23 1 1 1.00 1 0 0 0 1 0 0
..................................................GCGCGAAAGGAGAATGCGCTATAG............................................................................................. 24 2 1 1.00 1 1 0 0 0 0 0
..................................................GGGCGTAAGGGGAATGAGCTA................................................................................................ 21 3 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGAGAAGGAGCTCT............................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGATTATGAGCTATAT............................................................................................. 24 3 1 1.00 1 1 0 0 0 0 0
..................................................CTGCGACAGGAGAATGAGCTAT............................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGGGAATGTGCT................................................................................................. 20 2 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGTAAGGAGAATGAGCTAT............................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGTGAATGAGCCTTAG............................................................................................. 24 3 1 1.00 1 0 0 1 0 0 0
..................................................GTGCGAAAGGAGCATCAGCTATA.............................................................................................. 23 2 1 1.00 1 0 0 1 0 0 0
..................................................GGGCGAGAGGAGAATGAGCTATA.............................................................................................. 23 2 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGTGAATGATCTAT............................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGAGAATGAGATATAGA............................................................................................ 25 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGCAGACTGAGCTAT............................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..................................................GTGGGAAAGGAGAATGAGCTATA.............................................................................................. 23 1 1 1.00 1 0 0 1 0 0 0
..................................................GTGCGGAAGGGGAATGAGCTA................................................................................................ 21 2 1 1.00 1 1 0 0 0 0 0
..................................................CTGCGAAAGGAGAATGAGCTATAGAA........................................................................................... 26 2 1 1.00 1 0 0 0 1 0 0
..................................................GTGCGAAAGGAGAATGAGCTATAAA............................................................................................ 25 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGAGAATGATCTATAGA............................................................................................ 25 1 1 1.00 1 1 0 0 0 0 0
..................................................GGGAGAAAGGAGAATGAGCTATA.............................................................................................. 23 2 1 1.00 1 0 0 1 0 0 0
..................................................GCGCGAAAGGAGGATGAGCTATCG............................................................................................. 24 3 1 1.00 1 0 0 1 0 0 0
..................................................GTGCGAAAGGAGAAGGAGCTATAG............................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGACAATGAACTATAG............................................................................................. 24 2 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGAGAATGACCTATA.............................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAATGCGAATGAGCTAT............................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGCGAATGAGCTATAGC............................................................................................ 25 2 1 1.00 1 1 0 0 0 0 0
...............................................................................................GAAACACTTTCCCTTTCCGCAG.................................................. 22 1 1 1.00 1 0 0 0 1 0 0
..................................................GGGCGAAAGGAGGATGAGCTATAGA............................................................................................ 25 2 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGAGCCTGAGCTATA.............................................................................................. 23 2 1 1.00 1 0 0 1 0 0 0
...............................................................................................TAAACACTTGCCCTGTCCGCAT.................................................. 22 3 1 1.00 1 1 0 0 0 0 0
..................................................GGGCGACAGGAGAATGAGCTAT............................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGAAAATGAGCTATCGA............................................................................................ 25 2 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGGAAGGAGTATGAGCTAT............................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGAGCATGAGCTATAGA............................................................................................ 25 1 1 1.00 1 1 0 0 0 0 0
.................................................AGTGCGAAAGGAGAATGAGCTATAG............................................................................................. 25 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGAGTATGAGCTATA.............................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0
..................................................GGGCGAAAGGCGAATGAGCTAT............................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGCAAGGAGAATCAGCTATAG............................................................................................. 24 2 1 1.00 1 0 0 1 0 0 0
..................................................GTAAGAAAGGAGAATGCGCTATAG............................................................................................. 24 3 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGCGAATGAG................................................................................................... 18 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGCAAGGAGAATGAGCTATAGA............................................................................................ 25 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGAGAACGAGCTA................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0
..................................................GTACGCAAGGAGAATGAGCTATAGA............................................................................................ 25 2 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGAGACTGAGCTATAC............................................................................................. 24 2 1 1.00 1 1 0 0 0 0 0
..................................................GGGCGAAAGGAGACTGAGCTAT............................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..................................................GAGCGAACGGAGAATGAGCTAT............................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..................................................GGGCGAAGGGGGAATGAGCTATAGA............................................................................................ 25 3 1 1.00 1 1 0 0 0 0 0
..................................................GCGCGAAAGGAGAATGAGCTAG............................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAGGGAGAATGAGCTATAG............................................................................................. 24 1 1 1.00 1 0 1 0 0 0 0
..................................................GTGCGAAAGGAGAATCAGCTATA.............................................................................................. 23 1 1 1.00 1 0 0 1 0 0 0
..................................................GTACGAAAGGAGAATGAGCTATAGA............................................................................................ 25 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGAGTATGAGCTACCG............................................................................................. 24 3 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAATTGAGAATGGGCTAT............................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGAGTATGAGCTATAG............................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGAGACTGAGCTATAG............................................................................................. 24 1 1 1.00 1 0 0 1 0 0 0
..................................................GTGCGAAAGGAGAATAAGCTAT............................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0
...............................................................................................TAAACACGTTCCTTTTCCGCAGT................................................. 23 3 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGACAGGAGAATGAGCTATTGA............................................................................................ 25 2 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGTGCATGAGCTATAG............................................................................................. 24 2 1 1.00 1 1 0 0 0 0 0
...............................................................................................TAAACACTTTCCCTTTCCGCAGTA................................................ 24 2 1 1.00 1 0 0 0 1 0 0
..................................................GTGCGAGCGGGGAATGAGCTAT............................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAACGGAGTATAAGCTATAGA............................................................................................ 25 3 1 1.00 1 1 0 0 0 0 0
..................................................GAGCGAAAGGAGAATGAGCTATA.............................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGAGAATGAGCCA................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGAGAATGTGCTATAGC............................................................................................ 25 2 1 1.00 1 1 0 0 0 0 0
..................................................GGGTGAAAGGAGAATGGGCTATA.............................................................................................. 23 3 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGAGACTGAGCTA................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGAGGATGAGCTATAG............................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGCGAATGAGCTATA.............................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGCTAAATGAGACTGAGCTAT............................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0
...............................................................................................TAAACACTTTCCCTATCCGCAGT................................................. 23 2 1 1.00 1 1 0 0 0 0 0
..................................................GTGCGAAAGGAGTATGAGCT................................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0
..................................................GCGCGAACGGAGAACGAGCTAT............................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0
..................................................GGGCGACAGGAGCATGAGCTAT............................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0
..................................................GTGAGAAAGGAGAGTGAGCTA................................................................................................ 21 2 2 0.50 1 1 0 0 0 0 0
..................................................GGGCGAATGGCGAATGAGCTAT............................................................................................... 22 3 2 0.50 1 0 0 1 0 0 0
..................................................GAGGGAAAGGAGACTGAGCTAT............................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0
..................................................GTGAGAAAGAAGGATGAGCTAT............................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0
..................................................GTGCGAAAGGTGTATGGGCTATA.............................................................................................. 23 3 2 0.50 1 1 0 0 0 0 0
..................................................GTGCGAAAGAAGAATGAGATCT............................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0
...............................................................................................TAAACACTTTCCCTTGCCGCACT................................................. 23 3 2 0.50 1 1 0 0 0 0 0
...............................................................................................TAAAAACTTTCCCATTCAGCAGC................................................. 23 3 2 0.50 1 1 0 0 0 0 0
..................................................GTGCGACAGGCGAATGAGCTA................................................................................................ 21 2 2 0.50 1 1 0 0 0 0 0
..................................................GTGCGCAAGGAGAATCAGCTATC.............................................................................................. 23 3 2 0.50 1 1 0 0 0 0 0
..................................................GAGCGAAAGCCGAATGAGCTAT............................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0
..................................................GTGCGAAAGGTGAATGGGCT................................................................................................. 20 2 2 0.50 1 1 0 0 0 0 0
..................................................GTGCGCAAGCAGAATAAGCTATA.............................................................................................. 23 3 3 0.33 1 1 0 0 0 0 0
..................................................GTGCGCAAGGAGATTGAGCTC................................................................................................ 21 3 3 0.33 1 1 0 0 0 0 0
..................................................GTGCGAAAGACGAATGAGCCA................................................................................................ 21 3 3 0.33 1 1 0 0 0 0 0
..................................................GGGCGAGAGGAGAAGGAGCTATA.............................................................................................. 23 3 5 0.20 1 1 0 0 0 0 0
..................................................TAGCGAAAGGAGACTGAGCTA................................................................................................ 21 3 5 0.20 1 1 0 0 0 0 0
..................................................GTGCGGAGGGAGAATGAGCTGT............................................................................................... 22 3 6 0.17 1 1 0 0 0 0 0
...........CGCCGCCGGTCATGCCGTCC........................................................................................................................................ 20 3 14 0.07 1 0 0 0 1 0 0

Anti-sense strand reads

TTCGACGCCCTGCGGCCGACGGTACGGCAGGAGAAGGACTTGTATGGGTCCACGCTTTCCTCTTACTCGATATCTAAAACAAGCTACTCCGCTAGATTTGTGAAAGGGAAAGGCGTCGATACCGCCGCCGTGGGTGGGCACCTTGCTGAGCAAGCCCCGCTGCTTCG

**************************************************.(((((((((.(((.......((((((..(((......)))))))))......)))))))).)))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total V042

embryo

 V057

head

 V111

male body
......................................................................................CTGCGCTAGTTTTGTGAAA.............................................................. 19 2 1 1.00 1 1 0 0
..................TCGGTACGGCAGTAGAACGAC................................................................................................................................ 21 3 19 0.05 1 0 1 0
............................GGGAGAAGGACTTGTGTAG........................................................................................................................ 19 3 20 0.05 1 0 0 1
............................................................................................................................................CCAGCCTGAGCAAGCCCCG........ 19 3 20 0.05 1 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droPer2 scaffold_13:375028-375194 - dpe_736 confident AAGCTGCGGGACGCCGGCTGCCATGCCGTCCTCTTCCTGAACATACCCAGGTGCGAAAGG-------------AG-AATGAGCTATAGATTTTGTTCGATGAGGCGAT----------------------------------------------------------------------------------------------------------------CTAA--AC---ACTTT------------------------------------------------------------------------------------------------CCC-TTTCCGCAGCTATGGCGGCGGCACCCACCCGTGGAAC------------GACTCGTTCGGGGCGACGAAGC
dp5 XL_group1e:8192180-8192346 + dps_2749 confident AAGCTGCGGGACGCCGGCTGCCATGCCGTCCTCTTCCTGAACATACCCAGGTGCGAAAGG-------------AG-AATGAGCTATAGATGGTGTTCGATTAGGCGAT----------------------------------------------------------------------------------------------------------------CTAA--AC---ACTTT------------------------------------------------------------------------------------------------CCC-TTTCCGCAGCTATGGCGGCGGCACCCACCCGTGGAAC------------GACTCGTTCGGGGCGACGAAGC
droWil2 scf2_1100000004963:750366-750553 - AAACTGCGCGATGCCGGCTGTCATGCCGTACTCTTTCTCAACATACCCAGGTGAGAGAAA-------------T-----------------------------------------------------ATCGATTAAATTGAAATGAAGATTAAGTGGTAGTAGGAAGTAATT------------------------------------------GCATCGACTA--ATCAAC------------------------------------------------------------------------------TAT-----------------C-TAA-ATCCCACAGCTATAGCGGAGGCACTCATCCCTGGAAC------------GACTCCTTTAGCCAATCAAAGC
droVir3 scaffold_12726:2811755-2811910 + AAGCTACGCGATGCCGGCTGCCATGCTGTACTCTTTCTCAACATACCAAGGTGAGTTTTC------------------------------------------------------------------------------------------------------------------TT---------C----------------------------------------------------CCTCTCGCTCTTAC------AATAGA-T-TGCTA-------------------------------------ACAT-----------------T-TGT-CATCCACAGCTATGGCGGCGGCACACATCCCTGGAAC------------GACTCTTTTGGTCAGACTAAGC
droMoj3 scaffold_6473:5674512-5674669 - AAGCTCCGCGATGCCGGCTGCCATGCCGTCCTCTTTCTCAACATACCCAGGTAGGGCGAG-------------CC---------------------------------------A--CT-------------------------------------------------------GT---------C----------------------------------------------------TGTCTAGCTCCATC------ATTTGC-T-----GACT------------------------------------GA-----------------T-TGC-CATCCACAGCTATGGCGGCGGCACACATCCCTGGAAC------------GACTCCTTTGGCCAGACGAAGC
droGri2 scaffold_15203:6409733-6409893 + AAGCTGCGCGACGCCGGCTGCCATGCCGTCCTCTTTCTCAACATACCCAGGTGAGCCAAC-------------AC------------------------------TGTTAACC--------------------------------------------------------------------------------------------------------------------AGC--CGCT---------------CA--TATTTATTAGTTC---------------------------------T----GACCA-----------------A-ATAC-ACTTGTAGCTATGGGGGCGGCACACATCCGTGGAAC------------GACTCGCACGGTCCGACGAAGC
droAna3 scaffold_13047:734629-734782 + AAGCTTCGCGACGCCGGCTGCCATGCCGTCCTCTTCCTGAACATCCCCAGGTGAGGGATT------------------------------------------------------------------------------------------------------------------GC---------T-------------TCTCCAC------------------------------------------TACC------AAGAGA-GGTACTA-------------------------------------ACCA-----------------T-CTC-CCCCCACAGCTATGGCGGCGGCACCCATCCGTGGAAC------------GACTCCTTCGGTTCCACGAAGC
droBip1 scf7180000396431:522461-522614 + AAGCTGCGCGACGCCGGCTGCCACGCCGTCCTGTTCCTGAACATACCCAGGTAAGGGATT------------------------------------------------------------------------------------------------------------------CC---------T-------------CCTCTTT----------------------------------------TCTCA---------CAGG-GGCAGTAA------------------------------------CCAT-----------------C-TTC-CTCCCTCAGCTATGGCGGCGGCACCCATCCGTGGAAC------------GACTCATTCGGCTCCACGAAGC
droKik1 scf7180000302698:162585-162802 - AAGCTACGGGATGCTGGCTGCCATGCGGTGCTCTTCCTGAACATTCCCAGGTGGGTAGAT-------------GGGC-CT-------------------------------TTCC--T--------------------------------------------------------TT---------C----------------------------------------------------AATCTAGCTTTTAA------ATTAGT-T-----AATTATTAGCTAAAATTTAGCTAAAATTATTAGTAAAAATATATAATAATTCATAAATAACCCT-ATTCTTTAGCTATGGCGGCGGCACTCATCCTTGGAAC------------GACTCCTTTGGCTCTGCCAAGC
droFic1 scf7180000453800:1984898-1985077 + GAGTTGCCACCCGTCG------ATGGCATAATCATCTTGAATATTTTGAGGTAAGTGGAACATAAAG-----------------------------------------------AT---GCA-----------------------------------------------ATTATATAGGTTT-AAT-------------AATTCGT-----TATCCAAATTAAA--AT---GGTT----------------------------------T-----------------------------------------TA-----------------A-TCAT-TTTTTCAGCTGGGGAAGTGGAGCCAATCCCTGGGGTCCGGACAAGGACGACCAGT------TCTCTACGC
droEle1 scf7180000491008:102791-102978 + GAATTGCCACCCGTCGA------TGGTATCATCATCTTGAATATTTTGAGGTAAGCTGGC-------------AG-AAAA-------------------------------CCTA--CTGCTTGA-----------------------------------------------TTGTTT-TTATATTGTTG--------------------------------------------------------TGAATA----------------------------------TTTTGTTTGGATCATTAA----AACCT-----------------ATAAC-ACTTTCCAGCTGGGGCAGCGGTGCCAATCCCTGGGGTCCCGACAAGGACGACCAGT------TCTCCACGC
droRho1 scf7180000779169:97157-97345 - CGTCGATGGGA-----------------TTATCATCTTGAACATTTTAAGGTAAGCTAAG-------------AAGA-AA-------------------------------TTGA--TTGCTATT-----------------------------------------------TTGTTTGTTATATTATTTTGTATTACTTTATGATTATGAATAA-ACA-TTAAAAAC---AT-----------------------------------------------------------------------------TAT-----------------T-ACC-CTTTTCCAGCTGGGGCAGCGGTGCCAATCCCTGGGGTCCCGACAAGGACGATCAGT------TCTCCACGC
droBia1 scf7180000301760:2644076-2644253 + AAGCTCCGCGACGCCGGCTGCCATGCCGTCCTCTTCCTCAACATTCCCAGGTGAGTTCCG-------------GAGA-CC-------------------------------T--GTGGGGATATACCACCGATCATAC------------------------------------------------------------------CA-----ATAGCATATCCCA--AC---TTTT---------------------------------------------------------------------------CCC-----------------C-TCAT-CCCCGCAGCTATGGCGGCGGCACCCATCCGTGGAAC------------GACTCCTTCGGCGCCTCAAAGC
droTak1 scf7180000415169:1005755-1005827 - CACTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCC-----------------T-TTAT-TCCTGCAGCTATGGCGGTGGCACCCACCCGTGGAAC------------GACTCCTTTGGCGCCTCGAAGC
droEug1 scf7180000408176:353721-353888 + AAGCTACGCGATGCCGGCTGCCATGCCGTCCTCTTCCTCAACATTCCCAGGTGAGCTGCA-------------CG-----------------------ATTTGG-----------------------------------------------------------------------T-------TTTCCC------------------ATGAATAC-CAT-TTAA--TC-AAC--TTC--------------------------------CTA--------------------------------------TTC-----------------ATCTT-ATTCTATAGTTATGGCGGTGGCACTCACCCTTGGAAC------------GATTCCTTTGGCGCCTCGAAGC
dm3 chrX:8915275-8915441 + AAATTACGCGATGCCGGCTGCCATGCCGTGCTCTTCCTAAACATTCCCAGGTGAGTCGAA-------------GC------------------------------ATTTCATC--------------------------------------------------------------------------------------------------------------------AAC--GATT--------TAAATGACATATATTTGC-A--AC---------------------------------T----AACAC-----------------A-TTAT-CTTTGCAGCTATGGCGGTGGCACCCATCCATGGAAC------------GACTCCTTTGGCGCCTCCAAGC
droSim2 x:8463732-8463889 + AAACTGCGCGATGCCGGCTGCCATGCCGTGCTCTTCCTAAACATTCCCAGGTGGGTACCAACTTAAAATCGAA-------------------------------------------------------------------------------------------------G---------------------------------------------------------------------------TAAGTG------ATTTCA-A--AC---------------------------------T----AACTC-----------------A-TTAT-CCTTGCAGCTATGGCGGTGGCACCCATCCATGGAAC------------GACTCCTTTGGCGCCTCCAAGC
droSec2 scaffold_34:277805-277966 + AAACTGCGCGATGCCGGCTGCCATGCCGTGCTCTTCCTAAACATTCCCAGGTGGGTCCCAACTTAAAATCGAA-------------------------------------------------------------------------------------------------G---------------------------------------------------------------------------AAAGTGATA--TATTTCC-A--AC---------------------------------T----AATTC-----------------A-TTAT-CCCTGCAGCTATGGCGGTGGCACCCATCCATGGAAC------------GACTCCTTTGGCGCCTCCAAGC
droYak3 X:12397573-12397734 - AAACTGCGCGACGCCGGCTGCCATGCCGTCCTCTTCCTCAACATTCCCAGGTGGGTGGCAATGTTAATACATT-------------------------------------------------------------------------------------------------T---------------------------------------------------------------------------TCAGTGGCA--CATTTAC-A--GC---------------------------------T----TGGAC-----------------A-TTAT-GCTTGCAGCTATGGCGGTGGCACCCATCCGTGGAAC------------GACTCCTTTGGCGCCTCCAAGC
droEre2 scaffold_4690:6198367-6198529 - AAACTGCGCGACGCCGGCTGCCATGCCGTGCTCTTCCTCAACATTCCCAGGTGGGTTCAA-------------GC------------------------------GATTTA-------------------------A-------GACG----------------------------------------------------------------------------------------TT--------TAAGTGGCA--TATTTAC-A--GC---------------------------------G----AAGCC-----------------C-TTAT-CCTTGCAGCTATGGCGGCGGCACCCATCCATGGAAC------------GACTCATTTGGCGCCTCCAAGC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
AAGCTGCGGGACGCCGGCTGCCATGCCGTCCTCTTCCTGAACATACCCAGGTGCGAAAGG-------------AG-AATGAGCTATAGATTTTGTTCGATGAGGCGAT----------------------------------------------------------------------------------------------------------------CTAA--AC---ACTTT------------------------------------------------------------------------------------------------CCC-TTTCCGCAGCTATGGCGGCGGCACCCACCCGTGGAAC------------GACTCGTTCGGGGCGACGAAGCSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
..................................................GTGCGAAAGG-------------AG-AATGAGCTAT.................................................................................................................................................................................................................................................................................................................................221781.0078105084312380
..................................................GTGCGAAAGG-------------AG-AATGAGCTATAG...............................................................................................................................................................................................................................................................................................................................241353.003530408822338
..................................................GTGCGAAAGG-------------AG-AATGAGCTATAGA..............................................................................................................................................................................................................................................................................................................................251217.002170312812461
..................................................GTGCGAAAGG-------------AG-AATGAGCTATA................................................................................................................................................................................................................................................................................................................................231178.001781202810740
..................................................GTGCGAAAGG-------------AG-AATGAGCTA..................................................................................................................................................................................................................................................................................................................................211131.00131010115663
.............................................................................................................................................................................................................................TAA--AC---ACTTT------------------------------------------------------------------------------------------------CCC-TTTCCGCAGT.............................................................231114.001140143226015
.............................................................................................................................................................................................................................TAA--AC---ACTTT------------------------------------------------------------------------------------------------CCC-TTTCCGCAG..............................................................22192.009216158143
..................................................GTGCGAAAGG-------------AG-AATGAGCT...................................................................................................................................................................................................................................................................................................................................20143.004300031426
.............................................................................................................................................................................................................................TAA--AC---ACTTT------------------------------------------------------------------------------------------------CCC-TTTCCGCA...............................................................21111.0011090020
.............................................................................................................................................................................................................................TAA--AC---ACTTT------------------------------------------------------------------------------------------------CCC-TTTCCGCAGA.............................................................2317.007020410
..................................................GTGCGAAAGG-------------AG-AATGAGCTATAGT..............................................................................................................................................................................................................................................................................................................................2516.006000141
..................................................GTGCGAAAGG-------------AG-AATGAGCTATT................................................................................................................................................................................................................................................................................................................................2316.006000033
..................................................GTGCGAAAGG-------------AG-AATGAGC....................................................................................................................................................................................................................................................................................................................................1916.006000213
..................................................GTGCGAAAGG-------------AG-AATGAGCTATAA...............................................................................................................................................................................................................................................................................................................................2414.004000040
..................................................GTGCGAAAGG-------------AG-AATGAGCTATAGAA.............................................................................................................................................................................................................................................................................................................................2614.004000031
...................................................TGCGAAAGG-------------AG-AATGAGCTATAGA..............................................................................................................................................................................................................................................................................................................................2414.004000022
.............................................................................................................................................................................................................................TAA--AC---ACTTT------------------------------------------------------------------------------------------------CCC-TTTCCGC................................................................2013.003030000
..................................................GTGCGAAAGG-------------AG-AATGAGCTAC.................................................................................................................................................................................................................................................................................................................................2213.003000030
..............................................................................................................................................................................................................................AA--AC---ACTTT------------------------------------------------------------------------------------------------CCC-TTTCCGCAG..............................................................2113.003030000
..................................................GTGCGAAAGG-------------AG-AATGAGCTATAC...............................................................................................................................................................................................................................................................................................................................2412.002000020
..............................................................................................................................................................................................................................AA--AC---ACTTT------------------------------------------------------------------------------------------------CCC-TTTCCGCAGT.............................................................2212.002010010
..................................................GTGCGAAAGG-------------AG-AATGAGCTT..................................................................................................................................................................................................................................................................................................................................2112.002000011
..................................................GTGCGAAAGG-------------AG-AATGAG.....................................................................................................................................................................................................................................................................................................................................1812.002000011
.........................................................................................TTTTGTTCGATGAGGCGAT----------------------------------------------------------------------------------------------------------------C..........................................................................................................................................................................................2012.002000020
.............................................................................................................................................................................................................................TAA--AC---ACTTT------------------------------------------------------------------------------------------------CCC-TTTCCGCAAT.............................................................2311.001010000
..................................................GTGCGAAAGG-------------AG-AATGAGCTATAGAAA............................................................................................................................................................................................................................................................................................................................2711.001000010
..................................................GTGCGAAAGG-------------AG-AATGAGCTATAT...............................................................................................................................................................................................................................................................................................................................2411.001000010
..................................................GTGCGAAAGG-------------AG-AATGAGCTATC................................................................................................................................................................................................................................................................................................................................2311.001000010
..................................................GTGCGAAAGG-------------AG-AATGAGCTAG.................................................................................................................................................................................................................................................................................................................................2211.001000100
.........................................................................................TTTTGTTCGATGAGGCGAT----------------------------------------------------------------------------------------------------------------...........................................................................................................................................................................................1911.001000010
...................................................TGCGAAAGG-------------AG-AATGAGCT...................................................................................................................................................................................................................................................................................................................................1911.001000010
...................................................TGCGAAAGG-------------AG-AATGAGCTATAA...............................................................................................................................................................................................................................................................................................................................2311.001010000
.............................................................................................................................................................................................................................TAA--AC---ACTTT------------------------------------------------------------------------------------------------CCC-TTTCCGCAGTA............................................................2411.001010000
dp5
AAGCTGCGGGACGCCGGCTGCCATGCCGTCCTCTTCCTGAACATACCCAGGTGCGAAAGG-------------AG-AATGAGCTATAGATGGTGTTCGATTAGGCGAT----------------------------------------------------------------------------------------------------------------CTAA--AC---ACTTT------------------------------------------------------------------------------------------------CCC-TTTCCGCAGCTATGGCGGCGGCACCCACCCGTGGAAC------------GACTCGTTCGGGGCGACGAAGCSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
.............................................................................................................................................................................................................................TAA--AC---ACTTT------------------------------------------------------------------------------------------------CCC-TTTCCGCAG..............................................................221640.006400504367411101040
..................................................GTGCGAAAGG-------------AG-AATGAGCTAT.................................................................................................................................................................................................................................................................................................................................221262.00262054013311378001
.............................................................................................................................................................................................................................TAA--AC---ACTTT------------------------------------------------------------------------------------------------CCC-TTTCCGCAGT.............................................................231166.00166066153542620000
..................................................GTGCGAAAGG-------------AG-AATGAGCTATAG...............................................................................................................................................................................................................................................................................................................................241165.001650400919420010
..................................................GTGCGAAAGG-------------AG-AATGAGCTATAGA..............................................................................................................................................................................................................................................................................................................................251117.0011702941652733012
..................................................GTGCGAAAGG-------------AG-AATGAGCTATA................................................................................................................................................................................................................................................................................................................................23182.008201601023418020
.............................................................................................................................................................................................................................TAA--AC---ACTTT------------------------------------------------------------------------------------------------CCC-TTTCCGCA...............................................................21167.0067047611120000
..................................................GTGCGAAAGG-------------AG-AATGAGCTA..................................................................................................................................................................................................................................................................................................................................21142.00420150101610000
..............................................................................................................................................................................................................................AA--AC---ACTTT------------------------------------------------------------------------------------------------CCC-TTTCCGCAG..............................................................21133.003302903010000
..................................................GTGCGAAAGG-------------AG-AATGAGCT...................................................................................................................................................................................................................................................................................................................................20126.002606020414000
.........................................................................................TGGTGTTCGATTAGGCGAT----------------------------------------------------------------------------------------------------------------C..........................................................................................................................................................................................20124.00240321981000
.............................................................................................................................................................................................................................TAA--AC---ACTTT------------------------------------------------------------------------------------------------CCC-TTTCCGCAGC.............................................................23120.002001712000000
.............................................................................................................................................................................................................................TAA--AC---ACTTT------------------------------------------------------------------------------------------------CCC-TTTCCGC................................................................20114.001401400000000
...................................................TGCGAAAGG-------------AG-AATGAGCTATAGA..............................................................................................................................................................................................................................................................................................................................24111.00110801011000
.............................................................................................................................................................................................................................TAA--AC---ACTTT------------------------------------------------------------------------------------------------CCC-TTTCCGCAGA.............................................................23111.00110802001000
...................................................TGCGAAAGG-------------AG-AATGAGCTATAG...............................................................................................................................................................................................................................................................................................................................2319.0090700001001
..................................................GTGCGAAAGG-------------AG-AATGAGCTATAA...............................................................................................................................................................................................................................................................................................................................2418.0080301040000
...................................................TGCGAAAGG-------------AG-AATGAGCTAT.................................................................................................................................................................................................................................................................................................................................2117.0070600010000
..................................................GTGCGAAAGG-------------AG-AATGAGC....................................................................................................................................................................................................................................................................................................................................1916.0060201021000
.............................................................................................................................................................................................................................TAA--AC---ACTTT------------------------------------------------------------------------------------------------CCC-TTTCCGCAC..............................................................2215.0050023000000
..............................................................................................................................................................................................................................AA--AC---ACTTT------------------------------------------------------------------------------------------------CCC-TTTCCGCAGT.............................................................2215.0050500000000
...................................................................................................................................................................................................................................C---ACTTT------------------------------------------------------------------------------------------------CCC-TTTCCGCAG..............................................................1814.0040400000000
............................................................................................................................................................................................................................CTAA--AC---ACTTT------------------------------------------------------------------------------------------------CCC-TTTCCGCAG..............................................................2314.0040202000000
.............................................................................................................................................................................................................................TAA--AC---ACTTT------------------------------------------------------------------------------------------------CCC-TTTCCGCAGTA............................................................2413.0030300000000
....................................................GCGAAAGG-------------AG-AATGAGCTATAG...............................................................................................................................................................................................................................................................................................................................2213.0030300000000
..................................................GTGCGAAAGG-------------AG-AATGAG.....................................................................................................................................................................................................................................................................................................................................1812.0020000020000
..................................................GTGCGAAAGG-------------AG-AATGAGCTATAGAA.............................................................................................................................................................................................................................................................................................................................2612.0020100010000
...................................................TGCGAAAGG-------------AG-AATGAGCTATA................................................................................................................................................................................................................................................................................................................................2212.0020100010000
...............................................................................................................................................................................................................................A--AC---ACTTT------------------------------------------------------------------------------------------------CCC-TTTCCGCAGT.............................................................2112.0020100100000
...............................................................................................................................................................................................................................A--AC---ACTTT------------------------------------------------------------------------------------------------CCC-TTTCCGCAG..............................................................2012.0020200000000
..............................................................................................................................................................................................................................AA--AC---ACTTT------------------------------------------------------------------------------------------------CCC-TTTCCGC................................................................1912.0020200000000
............................................................................................................................................................................................................................CTAA--AC---ACTTT------------------------------------------------------------------------------------------------CCC-TTTCCGCAGT.............................................................2412.0020011000000
..............................................................................................................................................................................................................................AA--AC---ACTTT------------------------------------------------------------------------------------------------CCC-TTTCCGCA...............................................................2012.0020200000000
...................................................TGCGAAAGG-------------AG-AATGAGCTATT................................................................................................................................................................................................................................................................................................................................2211.0010100000000
..................................................GTGCGAAAGG-------------AG-AATGAGCTT..................................................................................................................................................................................................................................................................................................................................2111.0010000001000
.............................................................................................................................................................................................................................TAA--AC---ACTTT------------------------------------------------------------------------------------------------CCC-TTTCCGCC...............................................................2111.0010100000000
.......................................................................................GATGGTGTTCGATTAGGCG.............................................................................................................................................................................................................................................................................................................1911.0010000010000
..................................................................................................................................................................................................................................AC---ACTTT------------------------------------------------------------------------------------------------CCC-TTTCCGCAG..............................................................1911.0010100000000
..............................................................................................................................................................................................................................AA--AC---ACTTT------------------------------------------------------------------------------------------------CCC-TTTCCGCAGA.............................................................2211.0010100000000
..............................................................................................................................................................................................................................AA--AC---ACTTT------------------------------------------------------------------------------------------------CCC-TTTCCGCAGC.............................................................2211.0010001000000
................GCTGCCATGCCGTCCTCTTC...................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..................................................GTGCGAAAGG-------------AG-AATGAGCTATT................................................................................................................................................................................................................................................................................................................................2311.0010001000000
...................................................TGCGAAAGG-------------AG-AATGAGCTA..................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..................................................GTGCGAAAGG-------------AG-AATGAGCTATAGAT.............................................................................................................................................................................................................................................................................................................................2611.0010000001000
....................................................GCGAAAGG-------------AG-AATGAGCTATAGA..............................................................................................................................................................................................................................................................................................................................2311.0010100000000
...................................................TGCGAAAGG-------------AG-AATGAGCTATAGAAA............................................................................................................................................................................................................................................................................................................................2611.0010100000000
...................................................................................................................................................................................................................................C---ACTTT------------------------------------------------------------------------------------------------CCC-TTTCCGCAGT.............................................................1911.0010100000000
.............................................................................................................................................................................................................................TAA--AC---ACTTT------------------------------------------------------------------------------------------------CCC-TTTCCGCAGTC............................................................2411.0010001000000
....................................................GCGAAAGG-------------AG-AATGAGCTAT.................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.........................................................................................TGGTGTTCGATTAGGCGAT----------------------------------------------------------------------------------------------------------------T..........................................................................................................................................................................................2011.0010100000000
..................................................GTGCGAAAGG-------------AG-AATGAGCTATG................................................................................................................................................................................................................................................................................................................................2311.0010001000000
.............................................................................................................................................................................................................................TAA--AC---ACTTT------------------------------------------------------------------------------------------------CCC-TTTCCGCG...............................................................2111.0010001000000
...................................................TGCGAAAGG-------------AG-AATGAGCT...................................................................................................................................................................................................................................................................................................................................1911.0010000100000
...................................................TGCGAAAGG-------------AG-AATGAGCTATAA...............................................................................................................................................................................................................................................................................................................................2311.0010100000000
............................................................................................................................................................................................................................CTAA--AC---ACTTT------------------------------------------------------------------------------------------------CCC-TTTCCGCA...............................................................2211.0010001000000
..................................................GTGCGAAAGG-------------AG-AATGAGCC...................................................................................................................................................................................................................................................................................................................................2011.0010000010000
.................................................GGTGCGAAAGG-------------AG-AATGAGCTATAG...............................................................................................................................................................................................................................................................................................................................2511.0010000010000
...................................................TGCGAAAGG-------------AG-AATGAGCTATAGAA.............................................................................................................................................................................................................................................................................................................................2511.0010000001000
droWil2
AAACTGCGCGATGCCGGCTGTCATGCCGTACTCTTTCTCAACATACCCAGGTGAGAGAAA-------------T-----------------------------------------------------ATCGATTAAATTGAAATGAAGATTAAGTGGTAGTAGGAAGTAATT------------------------------------------GCATCGACTA--ATCAAC------------------------------------------------------------------------------TAT-----------------C-TAA-ATCCCACAGCTATAGCGGAGGCACTCATCCCTGGAAC------------GACTCCTTTAGCCAATCAAAGCSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
.......................................................................................................................................................................................................................................................................................................................................................AGCTATAGCGGAGGCACTCATCC.........................................2311.00100001
.AACTGCGCGATGCCGGCTGG..................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000
droVir3
AAGCTACGCGATGCCGGCTGCCATGCTGTACTCTTTCTCAACATACCAAGGTGAGTTTTC------------------------------------------------------------------------------------------------------------------TT---------C----------------------------------------------------CCTCTCGCTCTTAC------AATAGA-T-TGCTA-------------------------------------ACAT-----------------T-TGT-CATCCACAGCTATGGCGGCGGCACACATCCCTGGAAC------------GACTCTTTTGGTCAGACTAAGCSizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
................................................................................................................................................................................................................................................................................................................................................................GGCGGCACACATCCCTGGAAC------------GACT..................2511.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TGCTGTACTCTTTCTCAACATA..........................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000100000
......CGCGATGCCGGCTGCCATGCTGT..........................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000100000
droMoj3
AAGCTCCGCGATGCCGGCTGCCATGCCGTCCTCTTTCTCAACATACCCAGGTAGGGCGAG-------------CC---------------------------------------A--CT-------------------------------------------------------GT---------C----------------------------------------------------TGTCTAGCTCCATC------ATTTGC-T-----GACT------------------------------------GA-----------------T-TGC-CATCCACAGCTATGGCGGCGGCACACATCCCTGGAAC------------GACTCCTTTGGCCAGACGAAGCSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
No Reads
droGri2
AAGCTGCGCGACGCCGGCTGCCATGCCGTCCTCTTTCTCAACATACCCAGGTGAGCCAAC-------------AC------------------------------TGTTAACC--------------------------------------------------------------------------------------------------------------------AGC--CGCT---------------CA--TATTTATTAGTTC---------------------------------T----GACCA-----------------A-ATAC-ACTTGTAGCTATGGGGGCGGCACACATCCGTGGAAC------------GACTCGCACGGTCCGACGAAGCSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
....................CCATGCCGTCCTCTTTCTC................................................................................................................................................................................................................................................................................................................................................................................1911.00110
droAna3
AAGCTTCGCGACGCCGGCTGCCATGCCGTCCTCTTCCTGAACATCCCCAGGTGAGGGATT------------------------------------------------------------------------------------------------------------------GC---------T-------------TCTCCAC------------------------------------------TACC------AAGAGA-GGTACTA-------------------------------------ACCA-----------------T-CTC-CCCCCACAGCTATGGCGGCGGCACCCATCCGTGGAAC------------GACTCCTTCGGTTCCACGAAGCSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
No Reads
droBip1
AAGCTGCGCGACGCCGGCTGCCACGCCGTCCTGTTCCTGAACATACCCAGGTAAGGGATT------------------------------------------------------------------------------------------------------------------CC---------T-------------CCTCTTT----------------------------------------TCTCA---------CAGG-GGCAGTAA------------------------------------CCAT-----------------C-TTC-CTCCCTCAGCTATGGCGGCGGCACCCATCCGTGGAAC------------GACTCATTCGGCTCCACGAAGCSizeHit CountTotal NormTotal
No Reads
droKik1
AAGCTACGGGATGCTGGCTGCCATGCGGTGCTCTTCCTGAACATTCCCAGGTGGGTAGAT-------------GGGC-CT-------------------------------TTCC--T--------------------------------------------------------TT---------C----------------------------------------------------AATCTAGCTTTTAA------ATTAGT-T-----AATTATTAGCTAAAATTTAGCTAAAATTATTAGTAAAAATATATAATAATTCATAAATAACCCT-ATTCTTTAGCTATGGCGGCGGCACTCATCCTTGGAAC------------GACTCCTTTGGCTCTGCCAAGCSizeHit CountTotal NormTotal
No Reads
droFic1
GAGTTGCCACCCGTCG------ATGGCATAATCATCTTGAATATTTTGAGGTAAGTGGAACATAAAG-----------------------------------------------AT---GCA-----------------------------------------------ATTATATAGGTTT-AAT-------------AATTCGT-----TATCCAAATTAAA--AT---GGTT----------------------------------T-----------------------------------------TA-----------------A-TCAT-TTTTTCAGCTGGGGAAGTGGAGCCAATCCCTGGGGTCCGGACAAGGACGACCAGT------TCTCTACGCSizeHit CountTotal NormTotal
No Reads
droEle1
GAATTGCCACCCGTCGA------TGGTATCATCATCTTGAATATTTTGAGGTAAGCTGGC-------------AG-AAAA-------------------------------CCTA--CTGCTTGA-----------------------------------------------TTGTTT-TTATATTGTTG--------------------------------------------------------TGAATA----------------------------------TTTTGTTTGGATCATTAA----AACCT-----------------ATAAC-ACTTTCCAGCTGGGGCAGCGGTGCCAATCCCTGGGGTCCCGACAAGGACGACCAGT------TCTCCACGCSizeHit CountTotal NormTotal
No Reads
droRho1
CGTCGATGGGA-----------------TTATCATCTTGAACATTTTAAGGTAAGCTAAG-------------AAGA-AA-------------------------------TTGA--TTGCTATT-----------------------------------------------TTGTTTGTTATATTATTTTGTATTACTTTATGATTATGAATAA-ACA-TTAAAAAC---AT-----------------------------------------------------------------------------TAT-----------------T-ACC-CTTTTCCAGCTGGGGCAGCGGTGCCAATCCCTGGGGTCCCGACAAGGACGATCAGT------TCTCCACGCSizeHit CountTotal NormTotal
No Reads
droBia1
AAGCTCCGCGACGCCGGCTGCCATGCCGTCCTCTTCCTCAACATTCCCAGGTGAGTTCCG-------------GAGA-CC-------------------------------T--GTGGGGATATACCACCGATCATAC------------------------------------------------------------------CA-----ATAGCATATCCCA--AC---TTTT---------------------------------------------------------------------------CCC-----------------C-TCAT-CCCCGCAGCTATGGCGGCGGCACCCATCCGTGGAAC------------GACTCCTTCGGCGCCTCAAAGCSizeHit CountTotal NormTotal
No Reads
droTak1
CACTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCC-----------------T-TTAT-TCCTGCAGCTATGGCGGTGGCACCCACCCGTGGAAC------------GACTCCTTTGGCGCCTCGAAGCSizeHit CountTotal NormTotal
No Reads
droEug1
AAGCTACGCGATGCCGGCTGCCATGCCGTCCTCTTCCTCAACATTCCCAGGTGAGCTGCA-------------CG-----------------------ATTTGG-----------------------------------------------------------------------T-------TTTCCC------------------ATGAATAC-CAT-TTAA--TC-AAC--TTC--------------------------------CTA--------------------------------------TTC-----------------ATCTT-ATTCTATAGTTATGGCGGTGGCACTCACCCTTGGAAC------------GATTCCTTTGGCGCCTCGAAGCSizeHit CountTotal NormTotal
No Reads
dm3
AAATTACGCGATGCCGGCTGCCATGCCGTGCTCTTCCTAAACATTCCCAGGTGAGTCGAA-------------GC------------------------------ATTTCATC--------------------------------------------------------------------------------------------------------------------AAC--GATT--------TAAATGACATATATTTGC-A--AC---------------------------------T----AACAC-----------------A-TTAT-CTTTGCAGCTATGGCGGTGGCACCCATCCATGGAAC------------GACTCCTTTGGCGCCTCCAAGCSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................CATCCATGGAAC------------GACTCCTTTGGCGC........2613.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000
...............................................................................................................................................................................................................................................................................................................................................................................TGGAAC------------GACTCCTTTGGCGCCT......2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................GGCGGTGGCACCCATCCAT.......................................1911.001000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................TTCCCAGGTGAGTCGAA-------------GC------------------------------A.............................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................TGC-A--AC---------------------------------T----AACAC-----------------A-TTAT-CTTTGCA...............................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................GGAAC------------GACTCCTTTGGCGCCTCCAA..2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................ATGGAAC------------GACTCCTTTGGCGCCTC.....2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................ATGGAAC------------GACTCCTTTGGCGCCTCCATC.2811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................GGAAC------------GACTCCTTTGGCGCCT......2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................TGCAGCTATGGCGGTGGAGT...............................................20200.051000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AAACTGCGCGATGCCGGCTGCCATGCCGTGCTCTTCCTAAACATTCCCAGGTGGGTACCAACTTAAAATCGAA-------------------------------------------------------------------------------------------------G---------------------------------------------------------------------------TAAGTG------ATTTCA-A--AC---------------------------------T----AACTC-----------------A-TTAT-CCTTGCAGCTATGGCGGTGGCACCCATCCATGGAAC------------GACTCCTTTGGCGCCTCCAAGCSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
No Reads
droSec2
AAACTGCGCGATGCCGGCTGCCATGCCGTGCTCTTCCTAAACATTCCCAGGTGGGTCCCAACTTAAAATCGAA-------------------------------------------------------------------------------------------------G---------------------------------------------------------------------------AAAGTGATA--TATTTCC-A--AC---------------------------------T----AATTC-----------------A-TTAT-CCCTGCAGCTATGGCGGTGGCACCCATCCATGGAAC------------GACTCCTTTGGCGCCTCCAAGCSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
No Reads
droYak3
AAACTGCGCGACGCCGGCTGCCATGCCGTCCTCTTCCTCAACATTCCCAGGTGGGTGGCAATGTTAATACATT-------------------------------------------------------------------------------------------------T---------------------------------------------------------------------------TCAGTGGCA--CATTTAC-A--GC---------------------------------T----TGGAC-----------------A-TTAT-GCTTGCAGCTATGGCGGTGGCACCCATCCGTGGAAC------------GACTCCTTTGGCGCCTCCAAGCSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
No Reads
droEre2
AAACTGCGCGACGCCGGCTGCCATGCCGTGCTCTTCCTCAACATTCCCAGGTGGGTTCAA-------------GC------------------------------GATTTA-------------------------A-------GACG----------------------------------------------------------------------------------------TT--------TAAGTGGCA--TATTTAC-A--GC---------------------------------G----AAGCC-----------------C-TTAT-CCTTGCAGCTATGGCGGCGGCACCCATCCATGGAAC------------GACTCATTTGGCGCCTCCAAGCSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................AAC------------GACTCATTTGGCGCC.......1811.0010100000

Generated: 10/20/2015 at 11:02 PM