ID:

dpe_707

 Coordinate:

scaffold_12:921856-922096 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-35.7 -35.7 -35.7

Flybase annnotation

CDS [Dper\GL25595-cds]; exon [dper_GLEANR_817:1]; CDS [Dper\GL25595-cds]; exon [dper_GLEANR_817:2]; intron [Dper\GL25595-in]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TATAGTGTCGCCTGGCCGGACGCATATTTTAACAGCACACCAGCCGATAGGTAATTAAATACTAAATGAGCACTCCGTCTCTCTCTCTCTTCTTACAGCTTGCGTGTGTGTGTGTGTATAAACAAAATATAAAAAATAAGCAAAAGCATCAAACACTTCTCCGACACCTACTCAAAAAGCTTAAGACATTCCAAAAGTAGCCACCAAACGGCCAAAATCGAAGCCACAGTAGGCAGCAAGCAGCACGGAGACCCACAGCGATTAACACTTGTTTGGAAAACGCAAACGCAGGCAGTTTGATTTCACTCTGGATCAGCCGCAGGAGATGGAAATTGATGCGC
**************************************************...........(((((((((......(((.((.....(((((.....((((((.(((((((.(((......)))..)))))........((....))...................((((((......((((..((.............(((.......))).....)).))))...)))))))))))))).....))))).....)).))).....))))))))).....((....))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M021
embryo
 V057
head
 V042
embryo
 M042
female body
 V111
male body
............................................................................................................................................................................................................................................................................................................TTTCACTCTGGATCAGCCGCAGGA................. 24 0 1 3.00 3 3 0 0 0 0
.............................................................................................................................................................................................................................................................................................................TTCACTCTGGATCAGCCGC..................... 19 0 1 1.00 1 0 1 0 0 0
...........................................................................................................................................................................................................................................................................................................ATTTCACTCTGGATCAGCC....................... 19 0 1 1.00 1 1 0 0 0 0
........................................................................................................................................................................................................................................................................................................TTGATTTCACTCTGGATC........................... 18 0 1 1.00 1 1 0 0 0 0
.................................................................................................................................................................................................................GGCCAAAATCGAAGCCACAGTAGGC........................................................................................................... 25 0 1 1.00 1 0 0 1 0 0
.........................................................................................................................................................................................................................................................................................................................CAGCCGCAAGAGATGGACAT........ 20 2 4 0.25 1 0 0 0 0 1
..................................................................TGAGGAATCCGTCTCTCTGTCT............................................................................................................................................................................................................................................................. 22 3 5 0.20 1 0 0 0 1 0
....................................................................................................................................................................................................................CAGAATTGAAGCCCCAGTA.............................................................................................................. 19 3 15 0.07 1 0 0 0 1 0
.................................................................GTGAGGAATCCGTCTCTCT................................................................................................................................................................................................................................................................. 19 3 20 0.05 1 0 1 0 0 0

Anti-sense strand reads

ATATCACAGCGGACCGGCCTGCGTATAAAATTGTCGTGTGGTCGGCTATCCATTAATTTATGATTTACTCGTGAGGCAGAGAGAGAGAGAAGAATGTCGAACGCACACACACACACATATTTGTTTTATATTTTTTATTCGTTTTCGTAGTTTGTGAAGAGGCTGTGGATGAGTTTTTCGAATTCTGTAAGGTTTTCATCGGTGGTTTGCCGGTTTTAGCTTCGGTGTCATCCGTCGTTCGTCGTGCCTCTGGGTGTCGCTAATTGTGAACAAACCTTTTGCGTTTGCGTCCGTCAAACTAAAGTGAGACCTAGTCGGCGTCCTCTACCTTTAACTACGCG
**************************************************...........(((((((((......(((.((.....(((((.....((((((.(((((((.(((......)))..)))))........((....))...................((((((......((((..((.............(((.......))).....)).))))...)))))))))))))).....))))).....)).))).....))))))))).....((....))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total V111
male body		 V057
head
 V050
head
 V042
embryo
.........................................................................................................................................................................................................................................................CTGGGTGTCGCTAATTGTG......................................................................... 19 0 1 2.00 2 2 0 0 0
................................................................................GAGAGAGAGAAGAATGTCGAA................................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0
.................................................................................................................................................................................................TTTCGTCGCTGGTTTGCTGGTT.............................................................................................................................. 22 3 4 0.25 1 0 1 0 0
.....................................................................................................................................................GTTTGTGAAGATGCTATG.............................................................................................................................................................................. 18 2 7 0.14 1 1 0 0 0
...........................AGATTGTCCTGTGGACGGC....................................................................................................................................................................................................................................................................................................... 19 3 13 0.08 1 0 1 0 0
...............................................................................................................................................................................................GTTTTCATCGGTAGAATGC................................................................................................................................... 19 3 17 0.06 1 0 0 0 1
...............................................................CTAACTCGTGAGGCTGAGA................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 1 0
......................................................................................................GCAAACACACCCACATATT............................................................................................................................................................................................................................ 19 2 20 0.05 1 0 0 1 0
....................................TGTGGTGGGCTAGCCATC............................................................................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_12:921806-922146 + dpe_707 TAT-AGT---G-----TCGCC----TGGCCGGAC---GC---ATATTTTAACAGCACACC---AGCCGATAGGTAATTAAATACT---AA--ATGAGCACTCC---------GT--CTC-TCTCTCTCTTCTTACAGC---TTGCGTGT------GT------------------------------------GTGTGTGT--AT---------------------A-AACAAAAT---ATA----------AAAAA-TAAGCA----------------A---A--AGCATCAAACA----------------------CTTCT-----C-CGACACC----TACTCA-----------AAAAGCTTA-AGACATTCCAAA---A--------------GTAGCCACCAA--------ACGGCCAAAA-TCG----A-------------------------------------------------------------------------------------------------------------------------------------------AGCCACAGTAGGCAGCAAGCAGCACGGAGACCCAC------------------------------AGC--GA-----------------------------------------------------------------------TTAACACTTGTTTGGA--AAA---C-GCAA-A---C----GCAGGCAGTTTGATTT--C-ACTCTGG---ATC---AGCCGCAGGAGATGGAAATTGATGCGC-------
dp5 XR_group6:235913-236253 + TAT-AGT---G-----TCGCC----TGGCCGGAC---GC---ATATTTTAACAGCACACC---AGCCGATAGGTAATTAAATACT---AA--ATGAGCACTCC---------GT--CTC-TCTCTCTCTTCTTACAGC---TTGCGTGT------GT------------------------------------GTGTGTGT--AT---------------------A-AACAAAAT---ATA----------AAAAA-TAAGCA----------------A---A--AGCATCAAACA----------------------CTTCT-----C-CGACACC----TACTCA-----------AAAAGCTTA-AGACATTCCAAA---A--------------GTAGCCACCAA--------ACGGCCAAAA-TCG----A-------------------------------------------------------------------------------------------------------------------------------------------AGCCACAGTAGGCAGCAAGCAGCACGGAGACCCAC------------------------------AGC--GA-----------------------------------------------------------------------TTAACACTTGTTTGGA--AAA---C-GCAA-A---C----GCAGGCAGTTTGATTT--C-ACTCTGG---ATC---AGCCGCAGGAGATGGAAATTGATGCGC-------
droWil2 scf2_1100000004949:1845172-1845504 - A-------------------------------------------------ACAATACACA---AATCGATAGGTAATTAAATACT---AT--ATTAATAATAT-------------TT---TATCTTTTTCTTACAGT---TTGCTTGT------GTATGCGTGCGTGTATGTGAGTGTGCGTGTGCCCCAATGTGTGTGTGTGTGTGCTG---TGTG-TTTGAGTA-AACAAAATCAG-------------AGAGA-TCTGCG----------CGA---A---C--AGCA---ACCA-------------------------------------AACC----CACACA-----------CAGAGCTTA-AGACATAAAAAAAAAC--------------AAAAAAATCAA----A---TCGACAG------AAA-A--------------------------------------------A---------------------GC--------TAAATTCAGT------------------------------------------------------TGA----------------------------------------------------------------A--GA-----------------------------------------------------------------------CAAGT--TTAATCGTA---CC--CC-T-GA-CCAGCG---GC-TGAAGACTTATTT--C-ACTCTGG---ATC---AGCCGCAGGAGATGGATATTGATGTGC-------
droVir3 scaffold_13049:20292579-20293029 - dvi_20742 GAA-AATTATGCCCATCCAGCCGAATGGACTGGC---GC---ATATTTTAGCAACTCGCA---AATCGATAGGTAATTAATAACT---AA--ATAAAAGTTCT--------------TT-TTGCTCTCTTCTTGCAGC---CGGTGAGT------GT------------------------------------GTATGTG--TGT----AGCTATC-------------------------A--TATATAAACAGTA-TAAGCATCAGCCAAATAAA-----------ACAAAAAACA-------------------------------------AGCC----CACACA-----------AAAAGCTTA-ACACATTCCATAAC-A-----------------GCCAAAA-----------GGCC------------------------------------GATCAAGTTT--GCTGAAAAGGCGCGAGCTTTGA-AACTGTAACAA-------AAG-TCAGACAGAGAAAGCGAGTGCGAGAGTGAGAAAGCGAGAGAGAGAGAGAGAGGGTGAGCGTGAGCGAGAGGCATCTAA----------------------------------CAGCTTATCGTTGGT--CT-----------------------------------------------------------------------TAAGT--TCGATCTGG-----CACCGAGGC-CGGACGGCTGC-AGCAGATTTTATTGGC-ACCCTGG---ATC---AGCCGCAGGAAATGGATATTGATGCTC-------
droMoj3 scaffold_6680:8003407-8003915 - CAA-TAT---GCGCGCTCACCTGAATGGACAGGC---GC---ATATATTAGCAACTTGCA---AATCGATAGGTAATTAAAACTTACTTA--ATAAACGTTCT-------------CTT--TGTTCTCTTCTTGCAGCAGCTGGTGAGTGTATGTGTATGCGTGCGTGCCAGTGCGTGAGTGCGTGCT------TGTGTG--AGT----CGCTAT-AG-----TATA-AACAATATTAG----------AAGCCTAA-AAA-CA-------------GCAACAAC--AGCTACA-ACA-------------------------------------AACCCACACACTCGATAA-AAAA-AAAAAGCTTA-ACACATTCCAAAAA-A---------------TAGCCAGAG-----------TGCC------------------------------------GATCGAGTT-GTACTGAAAAGGCCGGAACTTTGA-AACTGTAACA---------------GCG-----------------------------------------------------TGAGCAAG-------------------AGAGCGAA------------------------------AGT---GTTGAAG-AGCAGAA--GTAAAGGAGTGAAGAAGTAAAGTATCGTCGAACAGCTTTTAAGTGTGTTCCCCGTACAGT--TCGCTCTGG-----CAGTGTAGC-CGAGCGGCTAA-AGCAGTTTTCAGTGGC-ACACTGG---ATC---AGCCGCAGGAAATGGATATTGATGCTCCCATTGC
droGri2 scaffold_15110:16609980-16610417 + GAG-AATTATGCGCATCCAGCCGATTGGACAGCTGGCGC---ATATAAAAACAGCACACA---AATCGATAGGTAATTAATAGCT---AA--ATAAACCTTCTCTTTGTTCTCT--CTC-CCTCTCTCTTATTGCAGC---TGGTGAGTGTGAGTGTATGTGTGTGT--------------------------GCGTGTG--TGT----AACTATCAT------ATA-AA------C-------AATTTAAGCACAT-CAGACA-------A--------A---G--AGCAACAAGCAC---------------------CC--------A-CGCCAAA----AA-AAG-----AAACAAAAAAGCTTA-ACACATTCCAAAA------------------TAGCCAACA-----------GGCTA------CCACAAAAAACGAA---AAATACTTTCAAGATCCAGTTTGTACAA-AAAAGCGCGCACTTTGAAAACTGTA--------------------A-----------------------------------------------------CAAAGAACAAGGAAT--------------------------------------------------------A-------------------T---------------AAGCATAGTCAAA----TTTTGA-------------AATACGCTG-------------------GG-A---CA---GC-AGGAGATTTGAGTGGC-ACACTGG---ATC---AGCCGCAGGATATGGACATTGATGCTC-------
droAna3 scaffold_13337:17346144-17346519 + TGT-AGT---G-----ACTCC----TGGGTGGAT---GC---CTATTTTCACAGCCCACAGCAAATCGATAGGTAATTGCATACT---TTATATTCACGCTTC-------------CT---CTCTCTCTTCTTACAGC---TTGCGTGT------GTA------------------------------------AG----------------AAACAG--------A-AA------CAAATA--ACATAATACAGAA-TAAGCA----------------A---C--AGCATCAAACA----------------------CT-CT-----T-CGACACC----CACTCG-----------AAAAGCTTA-AAACATTCCAAAAG-A--------------GTAGCCACCA---------GCGGCCA------AAAGGCAAACAAAC---AAA-----------------------------A---------------------AAAT--------------AAG-----------------------------------------------------TAAACCAGTAGGCGATCGGCATCGGGGAGATCAAG------------------------------AGC---ATTAGACTACCGGAAGTGTATAGGAG--------------------------------------------------------TTCAGA--AA----T-C-GA-A---AA---TC-GACAGGTTCAGAT--C-ACCGTGG---ATC---AGCCGCAGGATATGGAAGTGGATGCGC-------
droBip1 scf7180000396741:647568-647962 + TTT-AGT---G-----ACTCC----TGGGTGGAT---GC---GTATTTTCACAACACACAGCAAATCGATAGGTAATTGCATACT---TCATATTCACGCTTC-------------TT---CTCTCTCTTCTTACAGC---TTGCGTGT------GTA------------------------------------AG----------------AAACAG--------A-AA------GAAATA--AAATAATACAAAA-TAAGCA----------------A---C--AGCATCAAACA----------------------CT-CT-----T-CGACACC----CACTCG-----------AAAAGCTTA-AAACATTCCAAAAG-A--------------GTAGCAACCAGC---G---GCGGCCTAACGCCAAACAAAGCCA-AA---AAA-----------------------------A---------------------AAAT--------------AAG-----------------------------------------------------TAAGCCAGTAGGCGATCGTCAGCGGGGAGATCAAC------------------------------AGC---ATTAGTACACCGGAAGTGTATAGGTGTGTAGAGATC---------------------GA-------------A-------------GA--TCC--CC-A-GG-A---CG---GC-GGCAGGTTGTAAT--C-ACCGTGG---ATC---AGCCGCAGGATATGGAAGTTGATGCGC-------
droKik1 scf7180000302686:1240974-1241405 + TAT-TGT---G-----TCTCC----TGGTCGGAG---GC---ACAGGTCG---------------ATGATAGGTAATTGAATTCT---CCGCATTCACGTTCC-------------CCCCTCTCTCTCTTCTTACAGC---CTGCTTGC------CTACGT---------TGTGCGTGTGT------------GTGTGTGTGTGTACGATG---TGAA--ATAAATA-AA------CAAAAA--AAGTTAAACAAA------TG----------AAAGCAA---C--------AAACAAACGTCAAAAAAATATCACACACTGCTCCGCAC-CGACACC----CACTCT--CAGAA---AAAAAGCTTAAAGACATTCCAAAAA-A------A------GGTAGCCAGCAGCAGCA---GCAGCAG-----CG-AGAAAAACAAAA---AAA-----------------------------G---------------------AAAT------------CGAAA-------------------------------------------A------ACATTGAGCAGTAGGCAGCCGTCGTCGA-----TTCAGGGCGGGCAATAAAACACACCAACCATCTCAGCC--GG-----------------------------------------------------------------------AA----ATTGGC---------------------------------------CAAAT--C-ACTCTGGAGGATCTGGAGCCGCAGGATATGGAAGTTGATGCGC-------
droFic1 scf7180000454065:1793497-1793841 + TAC-GAA---A-----TCTCC----TCGTCGGAG---AC---ATCTTTCCACAGCTTACA---AACGGATAGGTAATTCAATGCT---TGGCATTCACGCTCC-------------CT---TTCTCTCTTCTTGCAGC---TT------------------------------------------------------------------------CAG--------A-AA------CAAATA--AAATTAAGCAAAACTAAGCG----------------A---CAGAGCATCGAACA----------------------CC--------T-CGACACC----CACTCA-----AA----AAAAGCTTA-AGACATTCCAAAAA-G--------------GTAGCCACAAA----A---GGGGCTA------CAA-AAAAATAAAA---T-------------------------------A---------------------AAAT-------AAA-TTAAAA-----------------------------------------------------AGAAACAGTAGGCAGCTGG--------------------------------------CCATCTTGGGC--TA-----------------------------------------------------------------------CAAGCACTTGACCGGA--TT----T-C-GG-A---AG---GT-GGCAGGTTTTAAT--C-ACTCTGG---ATC---AGCCGCAGGATATGGAAGTTGATGCGC-------
droEle1 scf7180000491000:905334-905709 - TAT-GAC---G-----TCTCC----TGGCCGGCG---GC---CTCTTTCCACAGCCCACA---AACAGATAGGTAATTGAATACT---CGGCATTCACGTTCC-TCCTCC--TTCCCCC-CCTCTCTCTTCTTGCAGC---TT------------------------------------------------------------------------CAG--------A-AC------CAAATAAAAAATTAAGCAAAA-TAA--------------CAGCAACGCC--AGCTTCAAACA----------------------CG--------TCCGACACC----CACTCG-----AAAAAAAAGCGCTTA-AGACATTCCAAAACCAAAAAAAATAAA--AGTAGCCACCAG----AGCAGCGGCTG------AAA-AAAA----------AA-----------------------------A---------------------AAA--------------AAAC-----------------------------------------------------CGAAACAGTAGGCAGCTGT--------------------------------------CCATCTTGGGTTAGA-----------------------------------------------------------------------GATACACTTGGCCGGTTTTTT---T-T-GG-A---GG---GC-GGCCGGTTCAAAT--C-ACTCTGG---ATC---AGCCGCAGGATATGGAAGTGGATGCGC-------
droRho1 scf7180000770847:7421-7758 - TATAGAC---G-----TCG-------AGACGCCA---G-AGCCTCT--CTACAGTCCACA---ATCAGATAGGTAATTGAATTCT---TGGCATTCACGTTCC--------------TC--CTCTCTCTTCTTGCAGC---TT------------------------------------------------------------------------CAG--------A-AA------CAAATA--AAATTAAGCAAAG-TAA--------------CAGCAACCAC--AGCATCAAACA----------------------CT--------T-CGTCACC----CACGCG-----AA----AAAAGCTTA-AGACATTCCAAAAA-A------ATGAAAACGTAACCGCCAG----AGCAGCGGCAA------AA------ACAAA----------------------------------------------------------------------------AAC-----------------------------------------------------CGAAACAGTAGGCAGCTGT--------------------------------------CCATCTTGGGT--TA-----------------------------------------------------------------------TAAACACTTGGCCGTA---TT---T-T-GG-A---GG---GC-GGCCGGTTCAAGT--C-ACTCTGG---ATC---AGCCGCAGGATATGGAAGTGGATGCGC-------
droBia1 scf7180000302334:880410-880736 + TTC-GAG---G-----TCTCC----TGGTCGGAG---AC---GTCTTTTC---------A---GTCAGATAGGTAATTGAATTCT---CCGCATTCACGCTCC-------------CTC-TCTCTCTCTTGTTGCAGC---TT------------------------------------------------------------------------CAG--------A-AA------CAGATA--AAATTAAGCTAAA-TAAGCG----------------A---C--AGCATCAAACA----------------------CT--------T-CGACACC----CACTCG-----T-----TAAAGCTTA-AGACATTCCAAAAA-A--------------GTAGCCACCAA----A---GCGGCTAAGA-GCG-ACAAAAGTAAAA-----------------------------------------------------------------------------------------------------------------------------------AGAAACAGTAGGCAGCGA-------------------------------------AACCATCTTGGGT--TA-----------------------------------------------------------------------TAAACACTTGACCGGA--TTT---T-C-GG-A---GG---GC-GGCAGGTTGAAAT--CAAATCTGG---ATC---AGCCGCAGGATATGGAAGTTGATGCGC-------
droTak1 scf7180000415795:938830-939144 - TAT-GAG---G-----TCTCC----TGGTCGGAG---GC---TTCTTTCCACAGCCCTCA---ATCAGATAGGTAATTGAATTCT---TCGCATTCACGCTCC-------------CTC-TTTCTCTCTGTTTGCAGC---CT------------------------------------------------------------------------CAG--------AAAA------CGTATA--AAATTAAGCTAAA-TAAGCG----------------A---C--AGCATCAAACA----------------------CT--------T-CGACACC----CACTCG-----CA----AAAAGCTTA-AGACATTCCAAAAA-A------A----------AGAA---------------------------------AC---------------------------------------------------------------AA--------------AAG-----------------------------------------------------AAAAACAGTAGGCAGCTTGT------------------------------------GCCATTTTGGGT--TA-----------------------------------------------------------------------TAAACACTTGACCGGA--TTT---T-C-GGAA---GG---GC-GGCAGGTTCAAAT--CAAATCTGG---ATC---AGCCGCAGGATATGGAAGTTGATGCGC-------
droEug1 scf7180000408844:247299-247626 - T----------------CTCC----TGGTCGGAT---GC---TTCTTTTCACAGTCCACA---AACAGATAGGTAATTGTATTCC---TCGCATTCACGCTCC-------------CTC-TTTCTCTCTTATTGCAGC---TT------------------------------------------------------------------------CAG--------A-AA------C--ATA--AAATTAAGCTAAA-TAAGCA----------------A---C--AGCGTCAAACA----------------------CT--------T-CGACACC----CACTCG-----AAA--AAAAAGCTTA-AGACATTCCAAAAA-A--------------GTAGCT--CAA-----------------------ACGAAAACGAAAAAAAA------------------------------A---------------------AA-------------ACAATA-----------------------------------------------------AGATACAGTAGGCAGTCA--------------------------------------ACCATCTTGGGC--TA-----------------------------------------------------------------------TAAACACCTGTCCGGA--TCT---T-TCGA-A---GG---GC-GACAGGTTTATAT--CAAATCTGG---ATC---AGCCGCAGGATATGGAAGTTGATGCGC-------
dm3 chr3L:15516300-15516661 - TTT-GAC---G-----CCTCC----TGGACCGAA---GG---CTCTTTTCACAGCCCACA---TTCAGATAGGTAATTGAATTCT---GCGCATTCACGCTTC-------------CTC--TTCTCTCTTATTGCAGC---TT------------------------------------------------------------------------CAAA-G--CAAA-AA------CAGATA--AAATTAAGCT----TAAGCA----------------A---C--AGCATCAAACA----------------------CT--------T-CGACACC----CACTCG-----AAAA-AAAAAGCTTA-AGACATTCCAAAAAAA--------------GTAGCCAGCAA----A---GCGGCTA------AAA-AAAAATAAA----T-------------------------------A---------------------AGATAAAACCAAAACCCAAAA-----------------------------------------------------CGAAACAGTAGGCAGCTAT----------------------------------CCAACCATCTTGGGT--GA-----------------------------------------------------------------------CAAACACTTGACCGGC--TTT---T-T-GG-A---GG---GC-GACAGGTTTAAAT--CAAATCTGG---AGC---AGCCGCAGGATATGGAAGTTGATGCGC-------
droSim2 3l:15149934-15150294 - TTT-GAC---G-----CCTCC----TGGACAGAA---GAAGGCTCTTTTCACAGCCCACA---TTCTGATAGGTAATTGAATTCT---GCGCATTCACGCTTC-------------CTC--TTCTCTCTTATTGCAGC---TT------------------------------------------------------------------------CAA--------AAAA------CAGATA--AAATTAAGCTTAA-TAAGCA----------------A---C--AGCATCAAACA----------------------CT--------T-CGACACC----CACTCG-----AAA---AAAAGCTAA-AGACATTCCAAAAA-A--------------CTAGCCACCAA----A---GCGGCTA------AAACAAAAATAAAA---AAA-----------------------------A---------------------AGA----ACCTAAACCCAAAA-----------------------------------------------------CGAAACAGTAGGCAGATAT----------------------------------CCAACCATCTTTGGT--GA-----------------------------------------------------------------------CAAACACTTGACCGGC--TTT---T-T-GG-A---GG---GC-GACAGGTTTAAAT--CAAATCTGG---AGC---AGCCGCAGGATATGGAAGTTGATGCGC-------
droSec2 scaffold_0:7625774-7626132 - TTT-GAC---G-----CCTCC----TGGACAGAA---GAAGGCTCTTCTCACAGCCCACA---TTCTGATAGGTAATTGAATTCT---GCGCATTCACGCTTC-------------CTC--TTCTCTCTTATTGCAGC---TT------------------------------------------------------------------------CAA------AAA-AA------CAGATA--AAATTAAGCTTAA-TAAGCA----------------A---C--AGCATCAAACA----------------------CT--------T-CGACACC----CACTTG-----AAA---AAAAGCTAA-AGGCATTCCAAAAA-A--------------GTAGCCACCAA----A---GCGGCTA------AAACAAAAATAAAA---AAA-----------------------------A---------------------AAAT-------AAACCCAAAA-----------------------------------------------------CGAAACAGTAGGCAGATAT----------------------------------CCAACCATCTTTGGT--GA-----------------------------------------------------------------------CAAACACTTGACCGGC--TTT---T-T-GG-A---GG---GC-GACAGGTTTAAAT--CAAATCTGG---AGC---AGCCGCAGGATATGGAAGTTGATGCGC-------
droYak3 3L:18031948-18032299 - TAT-GAG---G-----CCTCC----TGGGCGGAA---GCAGGCTCTTTTCACAGTCCACA---TTCAGATAGGTAATTGAATTCT---GCGCATTCACGCTTC-------------CTC-TTTCTCTCTTATTGCAGC---TT------------------------------------------------------------------------CAG--------A-AA------CAGATA--AAGTTAAGCTAAA-TAAGCA----------------A---C--AGCATCAAACA----------------------CT--------T-CGACACC----CACTCG-----AAA---AAAAGCTAA-AGACATTCCAAAAA-A--------------GTAGCCAGCAA----A---GCGGCTA------TAA-AAAAACAAAA----------------------------------------------------------------ACCAAAA-CCAAAT-----------------------------------------------------CGAAACAGTAGGCAGCTAA----------------------------------CCAACCATCTTGGGT--GA-----------------------------------------------------------------------CAAACACTTGACCGGC--TTT---T-T-GG-A---GG---GC-GGCAGGTTTCAAT--CAAATCTGG---ATC---AGCCGCAGGATATGGAAGTTGATGCGC-------
droEre2 scaffold_4784:17774026-17774374 - TTT-GAG---G-----CCTCC----TGGATGGAA---GCAGGCTCTGTTCACAGCCCACA---CTCAGATAGGTAATTGAATTCT---GGGCATTCACGCTTC-------------CTC-TTTCTCTCTTATTGCAGC---TT------------------------------------------------------------------------CAG--------A-AA------CAGATA--AAATTAAGCTAAC-TAAGCA----------------A---C--AGCATCAAACA----------------------CT--------T-CGACACC----CACTCG-----AA----AAAAGCTAA-AGACATTCCAAACA-A--------------GTAGCAAGCAA----A---GCGGCTA------AAA----ATTAAAA----------------------------------------------------------------ACCAAAAACCAAAA-----------------------------------------------------CGAAACAGTAGGCAGCTAA----------------------------------GCAACCATCTTGGGT--GA-----------------------------------------------------------------------CATACACTTGTCCGGC--TTT---T-T-GG-A---GG---GC-GGCAGGTTTGAAT--CAAATCTGG---ATC---AGCCGCAGGATATGGAAGTTGATGCGC-------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
TAT-AGT---G-----TCGCC----TGGCCGGAC---GC---ATATTTTAACAGCACACC---AGCCGATAGGTAATTAAATACT---AA--ATGAGCACTCC---------GT--CTC-TCTCTCTCTTCTTACAGC---TTGCGTGT------GT------------------------------------GTGTGTGT--AT---------------------A-AACAAAAT---ATA----------AAAAA-TAAGCA----------------A---A--AGCATCAAACA----------------------CTTCT-----C-CGACACC----TACTCA-----------AAAAGCTTA-AGACATTCCAAA---A--------------GTAGCCACCAA--------ACGGCCAAAA-TCG----A-------------------------------------------------------------------------------------------------------------------------------------------AGCCACAGTAGGCAGCAAGCAGCACGGAGACCCAC------------------------------AGC--GA-----------------------------------------------------------------------TTAACACTTGTTTGGA--AAA---C-GCAA-A---C----GCAGGCAGTTTGATTT--C-ACTCTGG---ATC---AGCCGCAGGAGATGGAAATTGATGCGC-------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT--C-ACTCTGG---ATC---AGCCGCAGGA........................2413.003300000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--C-ACTCTGG---ATC---AGCCGC............................1911.001000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTT--C-ACTCTGG---ATC---AGCC..............................1911.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATTT--C-ACTCTGG---ATC---..................................1811.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAAAA-TCG----A-------------------------------------------------------------------------------------------------------------------------------------------AGCCACAGTAGGC................................................................................................................................................................................................................................................2511.001001000
dp5
TAT-AGT---G-----TCGCC----TGGCCGGAC---GC---ATATTTTAACAGCACACC---AGCCGATAGGTAATTAAATACT---AA--ATGAGCACTCC---------GT--CTC-TCTCTCTCTTCTTACAGC---TTGCGTGT------GT------------------------------------GTGTGTGT--AT---------------------A-AACAAAAT---ATA----------AAAAA-TAAGCA----------------A---A--AGCATCAAACA----------------------CTTCT-----C-CGACACC----TACTCA-----------AAAAGCTTA-AGACATTCCAAA---A--------------GTAGCCACCAA--------ACGGCCAAAA-TCG----A-------------------------------------------------------------------------------------------------------------------------------------------AGCCACAGTAGGCAGCAAGCAGCACGGAGACCCAC------------------------------AGC--GA-----------------------------------------------------------------------TTAACACTTGTTTGGA--AAA---C-GCAA-A---C----GCAGGCAGTTTGATTT--C-ACTCTGG---ATC---AGCCGCAGGAGATGGAAATTGATGCGC-------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--C-ACTCTGG---ATC---AGCCGCAGG.........................2113.0030000000300
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--C-ACTCTGG---ATC---AGCCGCAGGAGATG....................2712.0020000000020
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGCAGCAAGCAGCACGGA.................................................................................................................................................................................................................................2112.0020200000000
....................................................................................................................................................................................................................................................................................................CAAACA----------------------CTTCT-----C-CGACACC----TACTCA-----------AA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................A--------------GTAGCCACCAA--------ACGGCCAAAA-TCG----.........................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGTTTGATTT--C-ACTCTGG---........................................2111.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGCAAGCAGCACGGA.................................................................................................................................................................................................................................1811.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAAA-TCG----A-------------------------------------------------------------------------------------------------------------------------------------------AGCCACAG.....................................................................................................................................................................................................................................................1911.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTT--C-ACTCTGG---ATC---AGCCGCAGG.........................2611.0010000000010
...................................................................................................................................................................................................GTGTGT--AT---------------------A-AACAAAAT---ATA----------AAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--C-ACTCTGG---ATC---AGCCGCAGGAGA......................2411.0010000000100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCAGCAAGCAGCACGGA.................................................................................................................................................................................................................................1911.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGG---ATC---AGCCGCAGGAGATGGA..................2311.0010000000001
droWil2
A-------------------------------------------------ACAATACACA---AATCGATAGGTAATTAAATACT---AT--ATTAATAATAT-------------TT---TATCTTTTTCTTACAGT---TTGCTTGT------GTATGCGTGCGTGTATGTGAGTGTGCGTGTGCCCCAATGTGTGTGTGTGTGTGCTG---TGTG-TTTGAGTA-AACAAAATCAG-------------AGAGA-TCTGCG----------CGA---A---C--AGCA---ACCA-------------------------------------AACC----CACACA-----------CAGAGCTTA-AGACATAAAAAAAAAC--------------AAAAAAATCAA----A---TCGACAG------AAA-A--------------------------------------------A---------------------GC--------TAAATTCAGT------------------------------------------------------TGA----------------------------------------------------------------A--GA-----------------------------------------------------------------------CAAGT--TTAATCGTA---CC--CC-T-GA-CCAGCG---GC-TGAAGACTTATTT--C-ACTCTGG---ATC---AGCCGCAGGAGATGGATATTGATGTGC-------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTT--C-ACTCTGG---ATC---AGCC..............................2112.00220000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTT--C-ACTCTGG---ATC---AGC...............................2312.00200020
......................................................................................................................................................................................................................TGTG-TTTGAGTA-AACAAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
...........................................................................................................................................................................................................GTGTGCTG---TGTG-TTTGAGTA-AA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
..................................................................................................................................................................................................................................................................................................A---ACCA-------------------------------------AACC----CACACA-----------CAGAGCTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGAGATGGATATTGATGT.........2111.00100010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGGAGATGGATATTGATGT.........2211.00100010
.............................................................................................................................................................................GAGTGTGCGTGTGCCCCAATGTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000
.....................................................................................................................................................................................................................................................................................................................................................................................................................AATCAA----A---TCGACAG------AAA-A--------------------------------------------A---------------------GC--------T............................................................................................................................................................................................................................................................................................................................2211.00100100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTT--C-ACTCTGG---ATC---AGCCGCAGG.........................2511.00101000
........................................................................................................................................................................................................TGTGTGTGCTG---TGTG-TTTGAGTA-AAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCGTA---CC--CC-T-GA-CCAGCG---GC-...................................................................2411.00100010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTT--C-ACTCTGG---ATC---AGCC..............................2011.00110000
droVir3
GAA-AATTATGCCCATCCAGCCGAATGGACTGGC---GC---ATATTTTAGCAACTCGCA---AATCGATAGGTAATTAATAACT---AA--ATAAAAGTTCT--------------TT-TTGCTCTCTTCTTGCAGC---CGGTGAGT------GT------------------------------------GTATGTG--TGT----AGCTATC-------------------------A--TATATAAACAGTA-TAAGCATCAGCCAAATAAA-----------ACAAAAAACA-------------------------------------AGCC----CACACA-----------AAAAGCTTA-ACACATTCCATAAC-A-----------------GCCAAAA-----------GGCC------------------------------------GATCAAGTTT--GCTGAAAAGGCGCGAGCTTTGA-AACTGTAACAA-------AAG-TCAGACAGAGAAAGCGAGTGCGAGAGTGAGAAAGCGAGAGAGAGAGAGAGAGGGTGAGCGTGAGCGAGAGGCATCTAA----------------------------------CAGCTTATCGTTGGT--CT-----------------------------------------------------------------------TAAGT--TCGATCTGG-----CACCGAGGC-CGGACGGCTGC-AGCAGATTTTATTGGC-ACCCTGG---ATC---AGCCGCAGGAAATGGATATTGATGCTC-------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGCATCTAA----------------------------------CAGCTTATCGTTGGT--C......................................................................................................................................................................................2812.002000000000000000000000000000000000000000000000000000000000000002
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGACAGAGAAAGCGAGTGC...................................................................................................................................................................................................................................................................................................2112.002000000000000000000000000000000000000000200000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGGGTGAGCGTGAGCGAGAGG.................................................................................................................................................................................................................................................2411.001000000000100000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGTTGGT--CT-----------------------------------------------------------------------TAAGT--TCGATCTGG-----A........................................................................................2611.001000000000000000000000000000000000001000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAGAAAGCGAGTGCGAGA...............................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGC-ACCCTGG---ATC---AGCCGCA...........................2311.001000000000000000001000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGTTGGT--CT-----------------------------------------------------------------------TAAGT--TCGATCTGG-----C........................................................................................2611.001000000000000000000000000000001000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................GCATCAGCCAAATAAA-----------ACAAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000010000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCAGGAAATGGATATTGATG..........2211.001000000000000000000000000000000010000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCGAGTGCGAGAGTGAGAAA.......................................................................................................................................................................................................................................................................................2311.001000000000100000000000000000000000000000000000000000000000000000
........................................................................................................................................GC---CGGTGAGT------GT------------------------------------GTATGTG--TG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000100000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTAA----------------------------------CAGCTTATCGTTGGT--C......................................................................................................................................................................................2211.001000000000000000001000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGC-ACCCTGG---ATC---AGCCGC............................1911.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCAGGAAATGGATATTGAT...........2111.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCGAGCTTTGA-AACTG.........................................................................................................................................................................................................................................................................................................................................1811.001000000000010000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC-AGCAGATTTTATTGGC-ACCCTGG---ATC---..................................2911.001000000000000000000000000000010000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAAAAGGCGCGAGCT...................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000001000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGCGAGAGGCATCTAA----------------------------------CAGCTT..................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGT--TCGATCTGG-----CACCGAGGC-C..............................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTT--GCTGAAAAGGCGCGAG.....................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000010000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAGAAAGCGAGTGCGAGAGT.............................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CC------------------------------------GATCAAGTTT--GCTGAAAAGGC..........................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000100000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGGAAATGGATATTGAT...........2011.001000000000000000000000000000000001000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCAGGAAATGGATATTGATGCT........2511.001000001000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAGCGTGAGCGAGAGGC................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000100000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC-ACCCTGG---ATC---AGCCGC............................1811.001000000000000000000001000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................TAAA-----------ACAAAAAACA-------------------------------------AGCC----CA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.501000000000000001000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCGAGTGCGAGAGTA............................................................................................................................................................................................................................................................................................1940.251000000000000000000000000000000000000000000000000000000000001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCGAGAGAGAGAGAGA.......................................................................................................................................................................................................................................................................20200.051000000000000000000000000000000000000000000000000000000000001000
droMoj3
CAA-TAT---GCGCGCTCACCTGAATGGACAGGC---GC---ATATATTAGCAACTTGCA---AATCGATAGGTAATTAAAACTTACTTA--ATAAACGTTCT-------------CTT--TGTTCTCTTCTTGCAGCAGCTGGTGAGTGTATGTGTATGCGTGCGTGCCAGTGCGTGAGTGCGTGCT------TGTGTG--AGT----CGCTAT-AG-----TATA-AACAATATTAG----------AAGCCTAA-AAA-CA-------------GCAACAAC--AGCTACA-ACA-------------------------------------AACCCACACACTCGATAA-AAAA-AAAAAGCTTA-ACACATTCCAAAAA-A---------------TAGCCAGAG-----------TGCC------------------------------------GATCGAGTT-GTACTGAAAAGGCCGGAACTTTGA-AACTGTAACA---------------GCG-----------------------------------------------------TGAGCAAG-------------------AGAGCGAA------------------------------AGT---GTTGAAG-AGCAGAA--GTAAAGGAGTGAAGAAGTAAAGTATCGTCGAACAGCTTTTAAGTGTGTTCCCCGTACAGT--TCGCTCTGG-----CAGTGTAGC-CGAGCGGCTAA-AGCAGTTTTCAGTGGC-ACACTGG---ATC---AGCCGCAGGAAATGGATATTGATGCTCCCATTGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................................................................................................AGCTGGTGAGTGTATGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGAAATGGATATTGATGCTCCCATT..2711.001100000
...................................................................................................................................................................................GTGCGTGCT------TGTGTG--AGT----CGCTAT-AG-----T..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001001000
.........................................................................................................................................................................................................................G-----TATA-AACAATATTAG----------AAGCCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000100
.....................................................................................................................................................................................................GTG--AGT----CGCTAT-AG-----TATA-AACAATATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000001
...................................................................................................................................TTGCAGCAGCTGGTGAGTGTATGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGCGGCTAA-AGCAGTTTT..........................................................2011.001100000
................................................................................................................................................................CGTGCGTGCCAGTGCGTGAGTGCGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGC-ACACTGG---ATC---AGCCGC............................1911.001100000
.......................................................................................................................................................................................GTGCT------TGTGTG--AGT----CGCTAT-AG-----T..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
....................................................................................................................................TGCAGCAGCTGGTGAGTGTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
...............................................................................................................................................................................GTGAGTGCGTGCT------TGTGTG--AGT----CGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
...............................................................................................................................................................................GTGAGTGCGTGCT------TGTGTG--AGT----CGCTAT-A.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001000010
droGri2
GAG-AATTATGCGCATCCAGCCGATTGGACAGCTGGCGC---ATATAAAAACAGCACACA---AATCGATAGGTAATTAATAGCT---AA--ATAAACCTTCTCTTTGTTCTCT--CTC-CCTCTCTCTTATTGCAGC---TGGTGAGTGTGAGTGTATGTGTGTGT--------------------------GCGTGTG--TGT----AACTATCAT------ATA-AA------C-------AATTTAAGCACAT-CAGACA-------A--------A---G--AGCAACAAGCAC---------------------CC--------A-CGCCAAA----AA-AAG-----AAACAAAAAAGCTTA-ACACATTCCAAAA------------------TAGCCAACA-----------GGCTA------CCACAAAAAACGAA---AAATACTTTCAAGATCCAGTTTGTACAA-AAAAGCGCGCACTTTGAAAACTGTA--------------------A-----------------------------------------------------CAAAGAACAAGGAAT--------------------------------------------------------A-------------------T---------------AAGCATAGTCAAA----TTTTGA-------------AATACGCTG-------------------GG-A---CA---GC-AGGAGATTTGAGTGGC-ACACTGG---ATC---AGCCGCAGGATATGGACATTGATGCTC-------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
TGT-AGT---G-----ACTCC----TGGGTGGAT---GC---CTATTTTCACAGCCCACAGCAAATCGATAGGTAATTGCATACT---TTATATTCACGCTTC-------------CT---CTCTCTCTTCTTACAGC---TTGCGTGT------GTA------------------------------------AG----------------AAACAG--------A-AA------CAAATA--ACATAATACAGAA-TAAGCA----------------A---C--AGCATCAAACA----------------------CT-CT-----T-CGACACC----CACTCG-----------AAAAGCTTA-AAACATTCCAAAAG-A--------------GTAGCCACCA---------GCGGCCA------AAAGGCAAACAAAC---AAA-----------------------------A---------------------AAAT--------------AAG-----------------------------------------------------TAAACCAGTAGGCGATCGGCATCGGGGAGATCAAG------------------------------AGC---ATTAGACTACCGGAAGTGTATAGGAG--------------------------------------------------------TTCAGA--AA----T-C-GA-A---AA---TC-GACAGGTTCAGAT--C-ACCGTGG---ATC---AGCCGCAGGATATGGAAGTGGATGCGC-------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAG------------------------------AGC---ATTAGACTACCGGAA.......................................................................................................................................................................2211.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGGTTCAGAT--C-ACCGT.............................................1911.001000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAGAT--C-ACCGTGG---ATC---A.................................1911.001000001
....AGT---G-----ACTCC----TGGGTGGAT---GC---CT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAGATCAAG------------------------------AGC---ATTAG.................................................................................................................................................................................2011.001000010
.................................................................................................................................................................................................................................................................................................................................................................................................A--------------GTAGCCACCA---------GCGGCCA------AAAGGCAAA.....................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
droBip1
TTT-AGT---G-----ACTCC----TGGGTGGAT---GC---GTATTTTCACAACACACAGCAAATCGATAGGTAATTGCATACT---TCATATTCACGCTTC-------------TT---CTCTCTCTTCTTACAGC---TTGCGTGT------GTA------------------------------------AG----------------AAACAG--------A-AA------GAAATA--AAATAATACAAAA-TAAGCA----------------A---C--AGCATCAAACA----------------------CT-CT-----T-CGACACC----CACTCG-----------AAAAGCTTA-AAACATTCCAAAAG-A--------------GTAGCAACCAGC---G---GCGGCCTAACGCCAAACAAAGCCA-AA---AAA-----------------------------A---------------------AAAT--------------AAG-----------------------------------------------------TAAGCCAGTAGGCGATCGTCAGCGGGGAGATCAAC------------------------------AGC---ATTAGTACACCGGAAGTGTATAGGTGTGTAGAGATC---------------------GA-------------A-------------GA--TCC--CC-A-GG-A---CG---GC-GGCAGGTTGTAAT--C-ACCGTGG---ATC---AGCCGCAGGATATGGAAGTTGATGCGC-------SizeHit CountTotal NormTotal
No Reads
droKik1
TAT-TGT---G-----TCTCC----TGGTCGGAG---GC---ACAGGTCG---------------ATGATAGGTAATTGAATTCT---CCGCATTCACGTTCC-------------CCCCTCTCTCTCTTCTTACAGC---CTGCTTGC------CTACGT---------TGTGCGTGTGT------------GTGTGTGTGTGTACGATG---TGAA--ATAAATA-AA------CAAAAA--AAGTTAAACAAA------TG----------AAAGCAA---C--------AAACAAACGTCAAAAAAATATCACACACTGCTCCGCAC-CGACACC----CACTCT--CAGAA---AAAAAGCTTAAAGACATTCCAAAAA-A------A------GGTAGCCAGCAGCAGCA---GCAGCAG-----CG-AGAAAAACAAAA---AAA-----------------------------G---------------------AAAT------------CGAAA-------------------------------------------A------ACATTGAGCAGTAGGCAGCCGTCGTCGA-----TTCAGGGCGGGCAATAAAACACACCAACCATCTCAGCC--GG-----------------------------------------------------------------------AA----ATTGGC---------------------------------------CAAAT--C-ACTCTGGAGGATCTGGAGCCGCAGGATATGGAAGTTGATGCGC-------SizeHit CountTotal NormTotal
No Reads
droFic1
TAC-GAA---A-----TCTCC----TCGTCGGAG---AC---ATCTTTCCACAGCTTACA---AACGGATAGGTAATTCAATGCT---TGGCATTCACGCTCC-------------CT---TTCTCTCTTCTTGCAGC---TT------------------------------------------------------------------------CAG--------A-AA------CAAATA--AAATTAAGCAAAACTAAGCG----------------A---CAGAGCATCGAACA----------------------CC--------T-CGACACC----CACTCA-----AA----AAAAGCTTA-AGACATTCCAAAAA-G--------------GTAGCCACAAA----A---GGGGCTA------CAA-AAAAATAAAA---T-------------------------------A---------------------AAAT-------AAA-TTAAAA-----------------------------------------------------AGAAACAGTAGGCAGCTGG--------------------------------------CCATCTTGGGC--TA-----------------------------------------------------------------------CAAGCACTTGACCGGA--TT----T-C-GG-A---AG---GT-GGCAGGTTTTAAT--C-ACTCTGG---ATC---AGCCGCAGGATATGGAAGTTGATGCGC-------SizeHit CountTotal NormTotal
No Reads
droEle1
TAT-GAC---G-----TCTCC----TGGCCGGCG---GC---CTCTTTCCACAGCCCACA---AACAGATAGGTAATTGAATACT---CGGCATTCACGTTCC-TCCTCC--TTCCCCC-CCTCTCTCTTCTTGCAGC---TT------------------------------------------------------------------------CAG--------A-AC------CAAATAAAAAATTAAGCAAAA-TAA--------------CAGCAACGCC--AGCTTCAAACA----------------------CG--------TCCGACACC----CACTCG-----AAAAAAAAGCGCTTA-AGACATTCCAAAACCAAAAAAAATAAA--AGTAGCCACCAG----AGCAGCGGCTG------AAA-AAAA----------AA-----------------------------A---------------------AAA--------------AAAC-----------------------------------------------------CGAAACAGTAGGCAGCTGT--------------------------------------CCATCTTGGGTTAGA-----------------------------------------------------------------------GATACACTTGGCCGGTTTTTT---T-T-GG-A---GG---GC-GGCCGGTTCAAAT--C-ACTCTGG---ATC---AGCCGCAGGATATGGAAGTGGATGCGC-------SizeHit CountTotal NormTotal
No Reads
droRho1
TATAGAC---G-----TCG-------AGACGCCA---G-AGCCTCT--CTACAGTCCACA---ATCAGATAGGTAATTGAATTCT---TGGCATTCACGTTCC--------------TC--CTCTCTCTTCTTGCAGC---TT------------------------------------------------------------------------CAG--------A-AA------CAAATA--AAATTAAGCAAAG-TAA--------------CAGCAACCAC--AGCATCAAACA----------------------CT--------T-CGTCACC----CACGCG-----AA----AAAAGCTTA-AGACATTCCAAAAA-A------ATGAAAACGTAACCGCCAG----AGCAGCGGCAA------AA------ACAAA----------------------------------------------------------------------------AAC-----------------------------------------------------CGAAACAGTAGGCAGCTGT--------------------------------------CCATCTTGGGT--TA-----------------------------------------------------------------------TAAACACTTGGCCGTA---TT---T-T-GG-A---GG---GC-GGCCGGTTCAAGT--C-ACTCTGG---ATC---AGCCGCAGGATATGGAAGTGGATGCGC-------SizeHit CountTotal NormTotal
No Reads
droBia1
TTC-GAG---G-----TCTCC----TGGTCGGAG---AC---GTCTTTTC---------A---GTCAGATAGGTAATTGAATTCT---CCGCATTCACGCTCC-------------CTC-TCTCTCTCTTGTTGCAGC---TT------------------------------------------------------------------------CAG--------A-AA------CAGATA--AAATTAAGCTAAA-TAAGCG----------------A---C--AGCATCAAACA----------------------CT--------T-CGACACC----CACTCG-----T-----TAAAGCTTA-AGACATTCCAAAAA-A--------------GTAGCCACCAA----A---GCGGCTAAGA-GCG-ACAAAAGTAAAA-----------------------------------------------------------------------------------------------------------------------------------AGAAACAGTAGGCAGCGA-------------------------------------AACCATCTTGGGT--TA-----------------------------------------------------------------------TAAACACTTGACCGGA--TTT---T-C-GG-A---GG---GC-GGCAGGTTGAAAT--CAAATCTGG---ATC---AGCCGCAGGATATGGAAGTTGATGCGC-------SizeHit CountTotal NormTotal
No Reads
droTak1
TAT-GAG---G-----TCTCC----TGGTCGGAG---GC---TTCTTTCCACAGCCCTCA---ATCAGATAGGTAATTGAATTCT---TCGCATTCACGCTCC-------------CTC-TTTCTCTCTGTTTGCAGC---CT------------------------------------------------------------------------CAG--------AAAA------CGTATA--AAATTAAGCTAAA-TAAGCG----------------A---C--AGCATCAAACA----------------------CT--------T-CGACACC----CACTCG-----CA----AAAAGCTTA-AGACATTCCAAAAA-A------A----------AGAA---------------------------------AC---------------------------------------------------------------AA--------------AAG-----------------------------------------------------AAAAACAGTAGGCAGCTTGT------------------------------------GCCATTTTGGGT--TA-----------------------------------------------------------------------TAAACACTTGACCGGA--TTT---T-C-GGAA---GG---GC-GGCAGGTTCAAAT--CAAATCTGG---ATC---AGCCGCAGGATATGGAAGTTGATGCGC-------SizeHit CountTotal NormTotal
No Reads
droEug1
T----------------CTCC----TGGTCGGAT---GC---TTCTTTTCACAGTCCACA---AACAGATAGGTAATTGTATTCC---TCGCATTCACGCTCC-------------CTC-TTTCTCTCTTATTGCAGC---TT------------------------------------------------------------------------CAG--------A-AA------C--ATA--AAATTAAGCTAAA-TAAGCA----------------A---C--AGCGTCAAACA----------------------CT--------T-CGACACC----CACTCG-----AAA--AAAAAGCTTA-AGACATTCCAAAAA-A--------------GTAGCT--CAA-----------------------ACGAAAACGAAAAAAAA------------------------------A---------------------AA-------------ACAATA-----------------------------------------------------AGATACAGTAGGCAGTCA--------------------------------------ACCATCTTGGGC--TA-----------------------------------------------------------------------TAAACACCTGTCCGGA--TCT---T-TCGA-A---GG---GC-GACAGGTTTATAT--CAAATCTGG---ATC---AGCCGCAGGATATGGAAGTTGATGCGC-------SizeHit CountTotal NormTotal
No Reads
dm3
TTT-GAC---G-----CCTCC----TGGACCGAA---GG---CTCTTTTCACAGCCCACA---TTCAGATAGGTAATTGAATTCT---GCGCATTCACGCTTC-------------CTC--TTCTCTCTTATTGCAGC---TT------------------------------------------------------------------------CAAA-G--CAAA-AA------CAGATA--AAATTAAGCT----TAAGCA----------------A---C--AGCATCAAACA----------------------CT--------T-CGACACC----CACTCG-----AAAA-AAAAAGCTTA-AGACATTCCAAAAAAA--------------GTAGCCAGCAA----A---GCGGCTA------AAA-AAAAATAAA----T-------------------------------A---------------------AGATAAAACCAAAACCCAAAA-----------------------------------------------------CGAAACAGTAGGCAGCTAT----------------------------------CCAACCATCTTGGGT--GA-----------------------------------------------------------------------CAAACACTTGACCGGC--TTT---T-T-GG-A---GG---GC-GACAGGTTTAAAT--CAAATCTGG---AGC---AGCCGCAGGATATGGAAGTTGATGCGC-------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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..........................GGACCGAA---GG---CTCTTTTCACAGCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCGGC--TTT---T-T-GG-A---GG---GC-GACA...............................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................TCC----TGGACCGAA---GG---CTCTTTTCACAGCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................ATTCCAAAAAAA--------------GTAGCCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TTT-GAC---G-----CCTCC----TGGACAGAA---GAAGGCTCTTTTCACAGCCCACA---TTCTGATAGGTAATTGAATTCT---GCGCATTCACGCTTC-------------CTC--TTCTCTCTTATTGCAGC---TT------------------------------------------------------------------------CAA--------AAAA------CAGATA--AAATTAAGCTTAA-TAAGCA----------------A---C--AGCATCAAACA----------------------CT--------T-CGACACC----CACTCG-----AAA---AAAAGCTAA-AGACATTCCAAAAA-A--------------CTAGCCACCAA----A---GCGGCTA------AAACAAAAATAAAA---AAA-----------------------------A---------------------AGA----ACCTAAACCCAAAA-----------------------------------------------------CGAAACAGTAGGCAGATAT----------------------------------CCAACCATCTTTGGT--GA-----------------------------------------------------------------------CAAACACTTGACCGGC--TTT---T-T-GG-A---GG---GC-GACAGGTTTAAAT--CAAATCTGG---AGC---AGCCGCAGGATATGGAAGTTGATGCGC-------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................TCC----TGGACAGAA---GAAGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00220000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAACCCAAAA-----------------------------------------------------CGAAACAGTAGGCAGA.............................................................................................................................................................................................................................................2711.00100000001000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGG---AGC---AGCCGCAG..........................1711.00100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGGCAGATAT----------------------------------CCAACCATCTTTGGT--.......................................................................................................................................................................................2611.00100000001000000000
........................................................................................................................................................................................................................................................TAAGCTTAA-TAAGCA----------------A---C--AGCATCAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGG---AGC---AGCCGCAGGATATGGAAGAAA.............2711.00100000000000010000
..........................................CTCTTTTCACAGCCCACA---T..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000100000000000
.................CTCC----TGGACAGAA---GAAGGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
droSec2
TTT-GAC---G-----CCTCC----TGGACAGAA---GAAGGCTCTTCTCACAGCCCACA---TTCTGATAGGTAATTGAATTCT---GCGCATTCACGCTTC-------------CTC--TTCTCTCTTATTGCAGC---TT------------------------------------------------------------------------CAA------AAA-AA------CAGATA--AAATTAAGCTTAA-TAAGCA----------------A---C--AGCATCAAACA----------------------CT--------T-CGACACC----CACTTG-----AAA---AAAAGCTAA-AGGCATTCCAAAAA-A--------------GTAGCCACCAA----A---GCGGCTA------AAACAAAAATAAAA---AAA-----------------------------A---------------------AAAT-------AAACCCAAAA-----------------------------------------------------CGAAACAGTAGGCAGATAT----------------------------------CCAACCATCTTTGGT--GA-----------------------------------------------------------------------CAAACACTTGACCGGC--TTT---T-T-GG-A---GG---GC-GACAGGTTTAAAT--CAAATCTGG---AGC---AGCCGCAGGATATGGAAGTTGATGCGC-------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGG---AGC---AGCCGCAGGATAT.....................2011.0010100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTGGT--GA-----------------------------------------------------------------------CAAACACTTGACCGGC--............................................................................................2711.0010010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAGTAGGCAGATAT----------------------------------CCAACC..................................................................................................................................................................................................2311.0010010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGG---AGC---AGCCGCAGGATATGGAAG................2411.0010100
...................CC----TGGACAGAA---GAAGGCTCTTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010001
droYak3
TAT-GAG---G-----CCTCC----TGGGCGGAA---GCAGGCTCTTTTCACAGTCCACA---TTCAGATAGGTAATTGAATTCT---GCGCATTCACGCTTC-------------CTC-TTTCTCTCTTATTGCAGC---TT------------------------------------------------------------------------CAG--------A-AA------CAGATA--AAGTTAAGCTAAA-TAAGCA----------------A---C--AGCATCAAACA----------------------CT--------T-CGACACC----CACTCG-----AAA---AAAAGCTAA-AGACATTCCAAAAA-A--------------GTAGCCAGCAA----A---GCGGCTA------TAA-AAAAACAAAA----------------------------------------------------------------ACCAAAA-CCAAAT-----------------------------------------------------CGAAACAGTAGGCAGCTAA----------------------------------CCAACCATCTTGGGT--GA-----------------------------------------------------------------------CAAACACTTGACCGGC--TTT---T-T-GG-A---GG---GC-GGCAGGTTTCAAT--CAAATCTGG---ATC---AGCCGCAGGATATGGAAGTTGATGCGC-------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT---T-T-GG-A---GG---GC-GGCAGGTTTCAAT--CA..................................................2611.00101000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---ATC---AGCCGCAGGATATGGAAGTTGAT...........2720.50100000010000
..............................GGAA---GCAGGCTCTTTTCACAGTCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.50101000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAA-CCAAAT-----------------------------------------------------CGAAACAGT....................................................................................................................................................................................................................................................2020.50101000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA----------------------------------CCAACCATCTTGGGT--GA-----------------------------------------------------------------------C.............................................................................................................2020.50100100000000
.......................................................................................................................................................................................................................................................TTAAGCTAAA-TAAGCA----------------A---C--AGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.50100100000000
droEre2
TTT-GAG---G-----CCTCC----TGGATGGAA---GCAGGCTCTGTTCACAGCCCACA---CTCAGATAGGTAATTGAATTCT---GGGCATTCACGCTTC-------------CTC-TTTCTCTCTTATTGCAGC---TT------------------------------------------------------------------------CAG--------A-AA------CAGATA--AAATTAAGCTAAC-TAAGCA----------------A---C--AGCATCAAACA----------------------CT--------T-CGACACC----CACTCG-----AA----AAAAGCTAA-AGACATTCCAAACA-A--------------GTAGCAAGCAA----A---GCGGCTA------AAA----ATTAAAA----------------------------------------------------------------ACCAAAAACCAAAA-----------------------------------------------------CGAAACAGTAGGCAGCTAA----------------------------------GCAACCATCTTGGGT--GA-----------------------------------------------------------------------CATACACTTGTCCGGC--TTT---T-T-GG-A---GG---GC-GGCAGGTTTGAAT--CAAATCTGG---ATC---AGCCGCAGGATATGGAAGTTGATGCGC-------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGG---ATC---AGCCGCAGGATATGGAAGTTGA............2811.0010000001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGGATATGGAAGTTGATGC.........2211.0011000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGATATGGAAGTTGAT...........1911.0010100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGG---ATC---AGCCGCAGGATATGGAA.................2611.0010000100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAA----------------------------------GCAACCATCTTGGGT--.......................................................................................................................................................................................1911.0010000100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAT--CAAATCTGG---ATC---AGC...............................2011.0010000100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGGC--TTT---T-T-GG-A---GG---GC-GGCA...............................................................2411.0010001000
...........................GATGGAA---GCAGGCTCTGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000100

Generated: 06/08/2015 at 03:04 PM