dpe_7

GCCGCCAGGAGATGTGAAGGAGCCCAAAGGATGCCCGCTCAATTACCATGACATAGTCGTACGGTGAATGTTGTGTATTGGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGTCAGCCAAGCAGCAAGCCGAACCGAACCGGAAGTGGAAGTGT *********************************.(((((((((((..(((((((((.((((((.(((((((.((.....))))))))).)))))).)))))))))..))))))))..))).**********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V057 head	V050 head	M021 embryo	V111 male body	M042 female body	V042 embryo
......................................................................................TGTTAACTGTAAGACTGTGTCT...................................................	22	0	1	50473.00	50473	16015	15536	6995	5810	4956	1161
......................................................................................TGTTAACTGTAAGACTGTGTC....................................................	21	0	1	4470.00	4470	1944	1268	315	549	349	45
......................................................................................TGTTAACTGTGAGACTGTGTCT...................................................	22	1	1	3405.00	3405	1437	1311	87	473	82	15
......................................................................................TGTTAACTGTAAGACTGTGT.....................................................	20	0	1	3077.00	3077	1385	583	9	935	154	11
......................................................................................TGTTAACTGTAAGACTGTGTCC...................................................	22	1	1	737.00	737	73	48	520	45	43	8
.......................................................................................GTTAACTGTAAGACTGTGTCT...................................................	21	0	1	676.00	676	34	50	12	84	492	4
......................................................................................TGGTAACTGTAAGACTGTGTCT...................................................	22	1	1	517.00	517	448	64	0	1	0	4
..................................................ACATAGTCGTACGGTGAATGTT.......................................................................................	22	0	1	338.00	338	160	129	14	15	17	3
......................................................................................TGTTAACTGTAAGACTGTGTCTT..................................................	23	1	1	327.00	327	107	91	6	85	24	14
......................................................................................TGTTAACTGTAGGACTGTGTCT...................................................	22	1	1	277.00	277	109	83	13	68	3	1
......................................................................................TGTTAACTGTAATACTGTGTCT...................................................	22	1	1	230.00	230	70	34	117	4	3	2
.....................................................................................ATGTTAACTGTAAGACTGTGTCT...................................................	23	0	1	214.00	214	90	45	38	24	11	6
......................................................................................TGTTAACTGTAAGACTGTGTCG...................................................	22	1	1	209.00	209	8	6	184	1	9	1
......................................................................................TGTTAACTGTAAGACTGTGTCA...................................................	22	1	1	152.00	152	62	28	2	12	46	2
......................................................................................TTTTAACTGTAAGACTGTGTCT...................................................	22	1	1	140.00	140	3	6	121	4	5	1
......................................................................................TGTTAACTGTGGGACTGTGTCT...................................................	22	2	1	135.00	135	59	54	0	22	0	0
......................................................................................TGTTAACTGTAAGACTGTGTCTA..................................................	23	1	1	134.00	134	26	18	11	7	47	25
........................................................................................TTAACTGTAAGACTGTGTCT...................................................	20	0	1	133.00	133	4	10	79	4	36	0
......................................................................................TGATAACTGTAAGACTGTGTCT...................................................	22	1	1	128.00	128	97	29	1	0	1	0
......................................................................................TGTTAACTGCAAGACTGTGTCT...................................................	22	1	1	126.00	126	76	41	3	4	1	1
......................................................................................TGTTAACTTTAAGACTGTGTCT...................................................	22	1	1	124.00	124	31	17	29	0	46	1
......................................................................................TGTTAACTGTAAGACTGTGCCT...................................................	22	1	1	116.00	116	54	30	14	9	6	3
......................................................................................TGTTAACTGTAAGCCTGTGTCT...................................................	22	1	1	109.00	109	75	30	0	0	1	3
......................................................................................TGTTAGCTGTAAGACTGTGTCT...................................................	22	1	1	107.00	107	23	73	2	4	3	2
......................................................................................TGTTAACTATAAGACTGTGTCT...................................................	22	1	1	93.00	93	9	8	1	2	72	1
......................................................................................TGTTAACTGTAAGACTGCGTCT...................................................	22	1	1	92.00	92	50	24	8	5	2	3
.......................................................................................TTTAACTGTAAGACTGTGTCT...................................................	21	1	1	89.00	89	0	0	73	12	4	0
......................................................................................TCTTAACTGTAAGACTGTGTCT...................................................	22	1	1	82.00	82	9	3	68	0	2	0
......................................................................................TGTTGACTGTAAGACTGTGTCT...................................................	22	1	1	82.00	82	37	27	1	13	1	3
......................................................................................TGTTAACTGGAAGACTGTGTCT...................................................	22	1	1	80.00	80	68	9	1	1	0	1
......................................................................................TGTTAACTGTAACACTGTGTCT...................................................	22	1	1	77.00	77	29	10	35	0	1	2
......................................................................................TGTTAAATGTAAGACTGTGTCT...................................................	22	1	1	74.00	74	56	16	0	0	0	2
......................................................................................TGCTAACTGTAAGACTGTGTCT...................................................	22	1	1	72.00	72	47	15	5	1	2	2
......................................................................................TGTTAACTGTAAGACTTTGTCT...................................................	22	1	1	71.00	71	17	15	32	4	3	0
......................................................................................TGTTAACTGTAAGGCTGTGTCT...................................................	22	1	1	70.00	70	38	17	8	4	0	3
......................................................................................CGTTAACTGTAAGACTGTGTCT...................................................	22	1	1	69.00	69	34	23	7	4	0	1
......................................................................................TGTTAACTGTAAGACTGTTTCT...................................................	22	1	1	67.00	67	30	22	9	3	3	0
......................................................................................TGTTAACTGTAAGACTGGGTCT...................................................	22	1	1	66.00	66	43	5	13	3	1	1
......................................................................................TGGTAACTGGAAGACTGTGTCT...................................................	22	2	1	62.00	62	56	6	0	0	0	0
......................................................................................TGTTAACTCTAAGACTGTGTCT...................................................	22	1	1	61.00	61	11	8	7	0	34	1
......................................................................................TGTTAACTGTAAGACTCTGTCT...................................................	22	1	1	61.00	61	35	18	7	1	0	0
......................................................................................TGTTAACTGTAAGACTGTG......................................................	19	0	1	59.00	59	34	8	0	5	12	0
......................................................................................TGTTAACTGTAAGACTGTCT.....................................................	20	1	1	58.00	58	7	18	25	2	6	0
......................................................................................TGTGAACTGTAAGACTGTGTCT...................................................	22	1	1	58.00	58	49	9	0	0	0	0
......................................................................................TGTTAACTGTGAGACTGTGTC....................................................	21	1	1	56.00	56	32	20	0	4	0	0
......................................................................................TGTTAACTGTAAGTCTGTGTCT...................................................	22	1	1	50.00	50	38	7	0	1	0	4
......................................................................................TGTTAACTGTAAGACTGTGTTT...................................................	22	1	1	49.00	49	31	12	1	0	2	3
......................................................................................TGTTAATTGTAAGACTGTGTCT...................................................	22	1	1	48.00	48	29	14	1	2	0	2
......................................................................................TGTTAACCGTAAGACTGTGTCT...................................................	22	1	1	48.00	48	23	10	5	7	1	2
......................................................................................TGTTAACTGTAAGAATGTGTCT...................................................	22	1	1	47.00	47	33	13	0	1	0	0
......................................................................................TGGTAACTGTAAGACTGTGT.....................................................	20	1	1	47.00	47	43	4	0	0	0	0
......................................................................................TGGTAACTGTAAGACTGTGTC....................................................	21	1	1	46.00	46	43	3	0	0	0	0
......................................................................................TGTCAACTGTAAGACTGTGTCT...................................................	22	1	1	45.00	45	25	14	2	3	0	1
......................................................................................TGTTAACTGTAAGACCGTGTCT...................................................	22	1	1	44.00	44	21	15	6	0	1	1
......................................................................................TGTTAACTGTACGACTGTGTCT...................................................	22	1	1	44.00	44	26	14	0	1	0	3
......................................................................................TGGTAACTGTGAGACTGTGTCT...................................................	22	2	1	43.00	43	41	2	0	0	0	0
......................................................................................TGTTAACTGTCAGACTGTGTCT...................................................	22	1	1	42.00	42	27	10	0	1	0	4
......................................................................................GGTTAACTGTAAGACTGTGTCT...................................................	22	1	1	42.00	42	13	10	1	4	13	1
......................................................................................TGTTAACTGTAAGACTATGTCT...................................................	22	1	1	42.00	42	17	17	8	0	0	0
.......................................................................................GTTAACTGTAAGACTGTGTC....................................................	20	0	1	40.00	40	3	1	0	7	29	0
......................................................................................AGTTAACTGTAAGACTGTGTCT...................................................	22	1	1	39.00	39	18	4	8	3	6	0
......................................................................................TGTTAACTGTAAGACTGAGTCT...................................................	22	1	1	39.00	39	24	12	1	1	1	0
......................................................................................TGTTAACTGTAAGACTGTGTAT...................................................	22	1	1	38.00	38	15	17	2	0	2	2
......................................................................................TATTAACTGTAAGACTGTGTCT...................................................	22	1	1	35.00	35	18	9	5	2	1	0
......................................................................................TGTTAACTGTAAGACTGTGGCT...................................................	22	1	1	35.00	35	22	6	6	1	0	0
......................................................................................TGTTAACTGTAAGACTGTATCT...................................................	22	1	1	34.00	34	9	19	2	2	0	2
......................................................................................TGTTAACTGTAAGACTGTGTCTC..................................................	23	0	1	34.00	34	26	4	0	1	3	0
..........................................................................................AACTGTAAGACTGTGTCT...................................................	18	0	1	34.00	34	3	2	21	2	6	0
..................................................ACATAGTCGTACGGTGAATGTTG......................................................................................	23	0	1	33.00	33	22	8	0	3	0	0
......................................................................................TGTTAACTGTAAGACTGTCTCT...................................................	22	1	1	33.00	33	17	11	1	2	2	0
.....................................................................................CTGTTAACTGTAAGACTGTGTCT...................................................	23	1	1	33.00	33	14	11	3	1	4	0
......................................................................................TGTTAACTGTAAAACTGTGTCT...................................................	22	1	1	31.00	31	3	4	21	1	1	1
......................................................................................TGTTGACTGTGAGACTGTGTCT...................................................	22	2	1	31.00	31	9	13	2	7	0	0
......................................................................................TGTTACCTGTAAGACTGTGTCT...................................................	22	1	1	30.00	30	9	21	0	0	0	0
......................................................................................TGTTAACTGAAAGACTGTGTCT...................................................	22	1	1	30.00	30	18	11	1	0	0	0
......................................................................................TGTTAACGGTAAGACTGTGTCT...................................................	22	1	1	29.00	29	27	1	0	0	0	1
......................................................................................TGTTATCTGTAAGACTGTGTCT...................................................	22	1	1	29.00	29	6	22	0	0	1	0
......................................................................................TGTTAACTGTAAGACTGTGTGT...................................................	22	1	1	27.00	27	19	5	1	2	0	0
......................................................................................TGTTAACTGTAAGACTGT.......................................................	18	0	1	27.00	27	1	2	16	3	4	1
......................................................................................TGGTAAGTGTAAGACTGTGTCT...................................................	22	2	1	26.00	26	24	2	0	0	0	0
......................................................................................TGGTAACTGTAATACTGTGTCT...................................................	22	2	1	25.00	25	18	7	0	0	0	0
......................................................................................TGTTAACTGTAAGACTGTGACT...................................................	22	1	1	24.00	24	9	10	2	1	1	1
......................................................................................TGGTAACTGTAAGACTGGGTCT...................................................	22	2	1	24.00	24	22	2	0	0	0	0
......................................................................................TGTTAACTGTATGACTGTGTCT...................................................	22	1	1	24.00	24	10	6	0	5	0	3
......................................................................................TGTTAACTGTAATACTGTGTC....................................................	21	1	1	23.00	23	15	6	2	0	0	0
.........................................................................................TAACTGTAAGACTGTGTCT...................................................	19	0	1	23.00	23	2	5	7	2	6	1
......................................................................................TGTTAACTGTAAGACTGTGTCTAA.................................................	24	2	1	23.00	23	0	0	0	0	14	9
.......................................................................................GTTAACTGTAAGACTGTGT.....................................................	19	0	1	23.00	23	1	1	0	4	17	0
......................................................................................TGTTAACTGCGAGACTGTGTCT...................................................	22	2	1	21.00	21	17	4	0	0	0	0
......................................................................................TGATAACTGCAAGACTGTGTCT...................................................	22	2	1	21.00	21	17	4	0	0	0	0
......................................................................................TGTTCACTGTAAGACTGTGTCT...................................................	22	1	1	20.00	20	15	5	0	0	0	0
......................................................................................TGTTAACTGTAAGATTGTGTCT...................................................	22	1	1	19.00	19	6	9	3	1	0	0
......................................................................................TGTTAACTGTGAGACTGTGT.....................................................	20	1	1	18.00	18	7	7	0	4	0	0
.......................................................................................GTTAACTGGAAGACTGTGTCT...................................................	21	1	1	17.00	17	0	0	0	0	17	0
......................................................................................TGTTAAGTGTAAGACTGTGTCT...................................................	22	1	1	17.00	17	14	3	0	0	0	0
......................................................................................TGGGAACTGTAAGACTGTGTCT...................................................	22	2	1	16.00	16	15	0	0	0	0	1
......................................................................................TGGTAACTGTAAGGCTGTGTCT...................................................	22	2	1	15.00	15	14	1	0	0	0	0
......................................................................................TGTTAACTGTAAGACTGTGCC....................................................	21	1	1	15.00	15	7	6	1	1	0	0
......................................................................................TGTTAACTGTGAGACTGCGTCT...................................................	22	2	1	15.00	15	7	7	1	0	0	0
......................................................................................TGTTAACTGTAAGACTGTGC.....................................................	20	1	1	15.00	15	10	1	2	2	0	0
......................................................................................TGTTAACTGTAAGACTGTGTCTAAA................................................	25	3	1	14.00	14	0	0	2	0	7	5
......................................................................................TGGTAACGGTAAGACTGTGTCT...................................................	22	2	1	14.00	14	13	1	0	0	0	0
......................................................................................TGTTTACTGTAAGACTGTGTCT...................................................	22	1	1	14.00	14	6	6	1	0	0	1
......................................................................................TGGTAACTGAAAGACTGTGTCT...................................................	22	2	1	14.00	14	11	3	0	0	0	0
......................................................................................TGATAACTGTAAGACTGTGTC....................................................	21	1	1	14.00	14	12	2	0	0	0	0
......................................................................................TGTAAACTGTAAGACTGTGTCT...................................................	22	1	1	13.00	13	10	3	0	0	0	0
......................................................................................TGATAACTGTAAGACTGTGT.....................................................	20	1	1	13.00	13	13	0	0	0	0	0
......................................................................................TGGTAACTGTAAGACTGTCTCT...................................................	22	2	1	13.00	13	11	2	0	0	0	0
......................................................................................TGTTAGCTGTAAGACTGTGTC....................................................	21	1	1	13.00	13	4	8	0	0	1	0
......................................................................................TGTTAGCTGTGAGACTGTGTCT...................................................	22	2	1	12.00	12	3	8	0	1	0	0
......................................................................................TGTTAACTGTGATACTGTGTCT...................................................	22	2	1	12.00	12	7	5	0	0	0	0
......................................................................................TGGTAACTGTAAGACTGTGGCT...................................................	22	2	1	12.00	12	10	2	0	0	0	0
......................................................................................TGGTGACTGTAAGACTGTGTCT...................................................	22	2	1	12.00	12	11	1	0	0	0	0
......................................................................................TGGTAACTGTAACACTGTGTCT...................................................	22	2	1	12.00	12	11	1	0	0	0	0
.......................................................................................GTTAACTGTGAGACTGTGTCT...................................................	21	1	1	12.00	12	1	1	0	1	9	0
......................................................................................TGTTAACTGGAAGACTGTGTC....................................................	21	1	1	12.00	12	10	2	0	0	0	0
......................................................................................TGTTAACTGTTAGACTGTGTCT...................................................	22	1	1	12.00	12	8	2	0	2	0	0
......................................................................................TGTTAACTGGGAGACTGTGTCT...................................................	22	2	2	11.50	23	19	3	0	1	0	0
......................................................................................TGTTAACTGTAAGACAGTGTCT...................................................	22	1	1	11.00	11	6	3	0	1	1	0
......................................................................................TGTTAACTGTAAGACTGTGTCTTT.................................................	24	2	1	11.00	11	2	4	1	4	0	0
......................................................................................TGTTAACTGTAGGACTGTGTC....................................................	21	1	1	11.00	11	5	3	0	3	0	0
......................................................................................TGTTAACTGTAAGACGGTGTCT...................................................	22	1	1	11.00	11	9	2	0	0	0	0
......................................................................................TGTTAACTGTGAGCCTGTGTCT...................................................	22	2	1	11.00	11	6	5	0	0	0	0
......................................................................................TGGTAGCTGTAAGACTGTGTCT...................................................	22	2	1	11.00	11	11	0	0	0	0	0
......................................................................................TGTGAACTGGAAGACTGTGTCT...................................................	22	2	1	10.00	10	9	1	0	0	0	0
......................................................................................TGGTAACTGTAAGACTGTGTTT...................................................	22	2	1	10.00	10	8	2	0	0	0	0
......................................................................................TTTTAACTGTAAGACTGTGTCC...................................................	22	2	1	10.00	10	0	0	10	0	0	0
......................................................................................TGTTAACTGTAAGACTGTGTA....................................................	21	1	1	10.00	10	5	4	0	1	0	0
......................................................................................TGATAATTGTAAGACTGTGTCT...................................................	22	2	1	10.00	10	9	1	0	0	0	0
......................................................................................TGTTAACTGTAATACTGTGT.....................................................	20	1	1	10.00	10	8	2	0	0	0	0
......................................................................................TGTTAACTGTGAGACTGTGCCT...................................................	22	2	1	10.00	10	7	3	0	0	0	0
......................................................................................TGCTAACTGTAAGACTGTGTC....................................................	21	1	1	10.00	10	10	0	0	0	0	0
......................................................................................TGTTAAATGCAAGACTGTGTCT...................................................	22	2	1	9.00	9	6	2	0	0	0	1
......................................................................................TGTTAACTGTAAGCCTCTGTCT...................................................	22	2	1	9.00	9	8	1	0	0	0	0
......................................................................................TGTTAACTGTAAGACTGTGTT....................................................	21	1	1	9.00	9	5	1	0	1	2	0
......................................................................................TGATAAATGTAAGACTGTGTCT...................................................	22	2	1	9.00	9	6	3	0	0	0	0
......................................................................................TGTTAACTGTAGGACTGTGT.....................................................	20	1	1	9.00	9	4	3	0	1	1	0
......................................................................................TGTTAATTGTAAGACTGTGT.....................................................	20	1	1	9.00	9	8	0	0	1	0	0
......................................................................................TGTTAACTGTAAGACTGCGT.....................................................	20	1	1	8.00	8	7	0	0	1	0	0
......................................................................................TGTTAACTGTAAGACTGCGTC....................................................	21	1	1	8.00	8	6	2	0	0	0	0
......................................................................................TGTTAACTGTAATACTTTGTCT...................................................	22	2	1	8.00	8	4	4	0	0	0	0
......................................................................................TGTTAACTATAAGACTGTGTC....................................................	21	1	1	8.00	8	2	1	0	0	5	0
......................................................................................TGATAACTGGAAGACTGTGTCT...................................................	22	2	1	8.00	8	4	4	0	0	0	0
......................................................................................TGGTAACTGTAAGACTGAGTCT...................................................	22	2	1	8.00	8	6	2	0	0	0	0
......................................................................................TGTTAACTGTAATACTGTGTCC...................................................	22	2	1	8.00	8	0	0	8	0	0	0
......................................................................................TGTTAACTGCAAGACTGTGTC....................................................	21	1	1	8.00	8	5	2	1	0	0	0
......................................................................................TGTTAACTGTAAGACTGTGAC....................................................	21	1	1	8.00	8	5	1	1	1	0	0
......................................................................................TTTTAACTGTAAGACTTTGTCT...................................................	22	2	1	8.00	8	0	0	8	0	0	0
......................................................................................TGTTAACTGGAAGACTGGGTCT...................................................	22	2	1	8.00	8	8	0	0	0	0	0
......................................................................................TGTTAACTGTGAGGCTGTGTCT...................................................	22	2	1	8.00	8	3	2	1	2	0	0
......................................................................................TGATAACTGTGAGACTGTGTCT...................................................	22	2	1	8.00	8	6	2	0	0	0	0
......................................................................................TGTTAACTGTAAGACTGTGTCAA..................................................	23	2	1	8.00	8	1	0	0	0	7	0
......................................................................................TGATAACGGCAAGACTGTGTCT...................................................	22	3	1	7.00	7	4	3	0	0	0	0
......................................................................................TGTTAAATGTGAGACTGTGTCT...................................................	22	2	1	7.00	7	6	1	0	0	0	0
........................................................................................TTAACTGTAAGACTGTGTCC...................................................	20	1	1	7.00	7	0	0	7	0	0	0
......................................................................................TGGTAACTGGAAGACTGTGTC....................................................	21	2	1	7.00	7	6	1	0	0	0	0
......................................................................................TGGTAACTGGAAGACTGTGTTT...................................................	22	3	1	7.00	7	7	0	0	0	0	0
......................................................................................TGTTAACTGTAAGACTGTGTCTG..................................................	23	1	1	7.00	7	4	1	0	0	2	0
......................................................................................TGTTAACTGTAATACTGTTTCT...................................................	22	2	1	7.00	7	5	2	0	0	0	0
......................................................................................TGTTAACGGTAAGACTGTGT.....................................................	20	1	1	7.00	7	6	0	0	1	0	0
......................................................................................TGGTAAATGTAAGACTGTGTCT...................................................	22	2	1	7.00	7	7	0	0	0	0	0
......................................................................................TGTGAACTGTAAGTCTGTGTCT...................................................	22	2	1	7.00	7	6	1	0	0	0	0
......................................................................................TGTTAAATGTAAGACTGTGT.....................................................	20	1	1	7.00	7	4	3	0	0	0	0
......................................................................................TGTTAACTGTAAGACTGTTT.....................................................	20	1	1	7.00	7	5	2	0	0	0	0
......................................................................................TGTTAACTGTAAGACTCTGT.....................................................	20	1	1	7.00	7	5	2	0	0	0	0
......................................................................................TGGTAACTGTAGGACTGTGTCT...................................................	22	2	1	7.00	7	7	0	0	0	0	0
......................................................................................TGTTAACTGCAAGACTGTGT.....................................................	20	1	1	7.00	7	3	4	0	0	0	0
......................................................................................TGTTAACTATAAGACTGTGT.....................................................	20	1	1	7.00	7	2	1	0	1	3	0
......................................................................................TGTTAACTTTAAGACTGTGT.....................................................	20	1	1	7.00	7	2	1	0	2	2	0
......................................................................................TGTTAACTGTAAGACTGTTTC....................................................	21	1	1	7.00	7	6	0	0	1	0	0
......................................................................................TGGTAACTGTAAGCCTGTGTCT...................................................	22	2	1	7.00	7	5	1	0	0	0	1
......................................................................................TGTTAAATGTAAGACTGTGTC....................................................	21	1	1	7.00	7	5	2	0	0	0	0
......................................................................................TGTTAACTGTAAGAGTGTGTCT...................................................	22	1	1	7.00	7	6	0	0	1	0	0
......................................................................................TGTTAACTGTAAGACTGTGA.....................................................	20	1	1	7.00	7	2	4	0	1	0	0
......................................................................................TGTTAACTGTAAGTCTGGGTCT...................................................	22	2	1	7.00	7	6	1	0	0	0	0
......................................................................................TGTTCACTGTAATACTGTGTCT...................................................	22	2	1	7.00	7	6	1	0	0	0	0
......................................................................................TGTTAACTGTGAGACTGTGTCC...................................................	22	2	1	7.00	7	2	1	3	0	1	0
......................................................................................TGGTAACTGGGAGACTGTGTCT...................................................	22	3	2	6.50	13	10	3	0	0	0	0
.......................................................................................GTTAACTGCAAGACTGTGTCT...................................................	21	1	1	6.00	6	0	0	0	0	6	0
......................................................................................TGGTATCTGTAAGACTGTGTCT...................................................	22	2	1	6.00	6	3	3	0	0	0	0
......................................................................................TGTTAACTGTAAGACTGGGCCT...................................................	22	2	1	6.00	6	5	1	0	0	0	0
......................................................................................TGGTAACTGCAAGACTGTCTCT...................................................	22	3	1	6.00	6	4	2	0	0	0	0
......................................................................................TGTTAACTGGAATACTGTGTCT...................................................	22	2	1	6.00	6	5	1	0	0	0	0
......................................................................................TGGTAACTGTAAGACTTTGTCT...................................................	22	2	1	6.00	6	5	1	0	0	0	0
......................................................................................TGGTAACTGTAAGACTATGTCT...................................................	22	2	1	6.00	6	5	1	0	0	0	0
.....................................................................................ATGTTAACTGTAAGACTGTGT.....................................................	21	0	1	6.00	6	1	2	0	3	0	0
.....................................................................................ATGTTAACTGTGAGACTGTGTCT...................................................	23	1	1	6.00	6	1	4	0	0	1	0
......................................................................................TGGTAACTGTAAGGCTGTGGCT...................................................	22	3	1	6.00	6	6	0	0	0	0	0
......................................................................................TGTTAACTGTAAGCCTGTGT.....................................................	20	1	1	6.00	6	4	2	0	0	0	0
......................................................................................TGGTAACTGCAAGACTGTGTCT...................................................	22	2	1	6.00	6	5	1	0	0	0	0
......................................................................................TGTTAACTGTAAGCCTGCGTCT...................................................	22	2	1	6.00	6	5	1	0	0	0	0
......................................................................................TGTTAATTGCAAGACTGTGTCT...................................................	22	2	1	6.00	6	4	2	0	0	0	0
......................................................................................TGTTAACTGTAACACTGTGTCC...................................................	22	2	1	6.00	6	2	0	4	0	0	0
......................................................................................TGGTAACGGTAAGACTGTGT.....................................................	20	2	1	6.00	6	6	0	0	0	0	0
......................................................................................TGGTAACTGTAAGACTGCGTCT...................................................	22	2	1	6.00	6	5	1	0	0	0	0
......................................................................................TGTTAACTGAGAGACTGTGTCT...................................................	22	2	1	6.00	6	3	3	0	0	0	0
......................................................................................TGTTAACTGTAAGACTTTGTCC...................................................	22	2	1	6.00	6	0	0	6	0	0	0
......................................................................................TGATAACGGTAAGACTGTGTCT...................................................	22	2	1	6.00	6	6	0	0	0	0	0
......................................................................................TGGTAACTGTAATACTGTGTC....................................................	21	2	1	6.00	6	5	1	0	0	0	0
......................................................................................TGTTAGCTGTAATACTGTGTCT...................................................	22	2	1	6.00	6	6	0	0	0	0	0
......................................................................................TGTTAACTTTAAGACTGTGTC....................................................	21	1	1	6.00	6	1	0	0	0	5	0
......................................................................................TAATAACTGTAAGACTGTGTCT...................................................	22	2	1	6.00	6	4	2	0	0	0	0
.....................................................................................TTGTTAACTGTAAGACTGTGTCT...................................................	23	1	1	6.00	6	1	0	0	0	5	0
......................................................................................TGTTAACTGTGAGACTGTGTCTT..................................................	23	2	1	6.00	6	6	0	0	0	0	0
......................................................................................TGTTAACTGTAAGACTGTGGC....................................................	21	1	1	6.00	6	4	2	0	0	0	0
......................................................................................TGGTAACTGTAAGACTGTGTCG...................................................	22	2	1	6.00	6	5	1	0	0	0	0
......................................................................................TGGTAACTGGAAGACTGGGTCT...................................................	22	3	1	6.00	6	5	1	0	0	0	0
......................................................................................TGGTAAGTGTAAGACTGGGTCT...................................................	22	3	1	6.00	6	5	1	0	0	0	0
......................................................................................GGGTAACTGTAAGACTGTGTCT...................................................	22	2	1	6.00	6	5	0	0	0	0	1
......................................................................................TGTTAACTGTAAGCCTGTGCCT...................................................	22	2	1	5.00	5	3	2	0	0	0	0
......................................................................................TGTTAACCGTAAGACTGTGT.....................................................	20	1	1	5.00	5	3	1	0	1	0	0
..................................................ACATAGTCGTACGGTGAATGT........................................................................................	21	0	1	5.00	5	3	1	0	0	1	0
......................................................................................TGTTAACTGTATGACTGTGTC....................................................	21	1	1	5.00	5	3	1	0	1	0	0
......................................................................................TGTCAACTGTGAGACTGTGTCT...................................................	22	2	1	5.00	5	4	1	0	0	0	0
......................................................................................CGTTAACTGTAAGACTGTGTC....................................................	21	1	1	5.00	5	2	3	0	0	0	0
......................................................................................TGTTACCTGTGAGACTGTGTCT...................................................	22	2	1	5.00	5	1	4	0	0	0	0
......................................................................................TGGTAACTGTAAGACTGTGCCT...................................................	22	2	1	5.00	5	5	0	0	0	0	0
......................................................................................TGTTAACTGTAATACTATGTCT...................................................	22	2	1	5.00	5	1	4	0	0	0	0
......................................................................................TGCTAACTGTGAGACTGTGTCT...................................................	22	2	1	5.00	5	3	0	0	1	1	0
......................................................................................TGTGAACTGTGAGACTGTGTCT...................................................	22	2	1	5.00	5	5	0	0	0	0	0
......................................................................................TGTTAACTGTAAGACTCTGTC....................................................	21	1	1	5.00	5	2	3	0	0	0	0
......................................................................................TGTTAACTGGAAGCCTGTGTCT...................................................	22	2	1	5.00	5	5	0	0	0	0	0
......................................................................................TGTTAACTGGAAGACTGTGGCT...................................................	22	2	1	5.00	5	5	0	0	0	0	0
......................................................................................TGTTAACTGTAAGACTGTC......................................................	19	1	1	5.00	5	0	0	2	2	1	0
......................................................................................TGTTAACTGTGAGTCTGTGTCT...................................................	22	2	1	5.00	5	2	3	0	0	0	0
......................................................................................TGTTAACTGTAAGACCGTGT.....................................................	20	1	1	5.00	5	4	0	0	1	0	0
........................................................................................TTAACTGTAAGACTGTGTC....................................................	19	0	1	5.00	5	1	0	1	1	2	0
......................................................................................TGTTAACTGTACGACTGTGT.....................................................	20	1	1	5.00	5	4	1	0	0	0	0
......................................................................................TGATAACTGTAATACTGTGTCT...................................................	22	2	1	5.00	5	2	3	0	0	0	0
......................................................................................TGTTAACTGGAAGACTGTGT.....................................................	20	1	1	5.00	5	5	0	0	0	0	0
.......................................................................................GTTAACTGAAAGACTGTGTCT...................................................	21	1	1	5.00	5	0	0	0	0	5	0
......................................................................................TGTTAACTGTAACACTGTGTC....................................................	21	1	1	5.00	5	2	3	0	0	0	0
......................................................................................TGTGAACTGTAAGACTGTGT.....................................................	20	1	1	5.00	5	5	0	0	0	0	0
......................................................................................CGTTAACTGTGAGACTGTGTCT...................................................	22	2	1	5.00	5	2	1	2	0	0	0
......................................................................................TGTTAAATGTAAGACTGTGTAT...................................................	22	2	1	5.00	5	3	2	0	0	0	0
.....................................................................................CTGTTAACTGTAAGACTGTGTC....................................................	22	1	1	5.00	5	4	1	0	0	0	0
......................................................................................TGGTAACTGTATGACTGTGTCT...................................................	22	2	1	5.00	5	5	0	0	0	0	0
......................................................................................TGTTAACGGGAAGACTGTGTCT...................................................	22	2	1	5.00	5	5	0	0	0	0	0
.......................................................................................GTTAACTGTAAGACTGTGTCTT..................................................	22	1	1	5.00	5	0	0	0	0	5	0
......................................................................................AGTTAACTGTGAGACTGTGTCT...................................................	22	2	1	5.00	5	2	1	0	1	1	0
......................................................................................TGTTAATTGTAAGACTGTGTC....................................................	21	1	1	5.00	5	4	1	0	0	0	0
......................................................................................TGTTAACGGTAAGACTGTGTC....................................................	21	1	1	5.00	5	5	0	0	0	0	0
......................................................................................TGGTAGCTGTAATACTGTGTCT...................................................	22	3	2	4.50	9	8	1	0	0	0	0
......................................................................................TGGTAACGGGAAGACTGTGTCT...................................................	22	3	2	4.50	9	8	1	0	0	0	0
.......................................................................................GTTAACTGTAAGACTGTGTCTA..................................................	22	1	1	4.00	4	1	0	0	0	3	0
......................................................................................TGTCAACTGTAAGACTGTGT.....................................................	20	1	1	4.00	4	3	0	0	1	0	0
......................................................................................TGTTAACTGTGCGACTGTGTCT...................................................	22	2	1	4.00	4	1	3	0	0	0	0
......................................................................................TGTTACCTGTAAGACTGTGTC....................................................	21	1	1	4.00	4	1	3	0	0	0	0
......................................................................................TGGTAACTGTAAGACTGTGTCC...................................................	22	2	1	4.00	4	3	1	0	0	0	0
......................................................................................TGTTAACTGTGACACTGTGTCT...................................................	22	2	1	4.00	4	3	1	0	0	0	0
......................................................................................TGTTAACTTTAAGACTTTGTCT...................................................	22	2	1	4.00	4	2	2	0	0	0	0
......................................................................................TGTTAACTGTAAGACTCTCTCT...................................................	22	2	1	4.00	4	3	1	0	0	0	0
......................................................................................AGTTAACTGTAAGACTGTGT.....................................................	20	1	1	4.00	4	3	0	0	1	0	0
......................................................................................TGGTAACTGTAAGACTGTGGC....................................................	21	2	1	4.00	4	2	1	0	0	0	1
......................................................................................TGTTAACTGTAAGACGGTGT.....................................................	20	1	1	4.00	4	3	0	0	1	0	0
......................................................................................TGTTAACTGTAAGACTGGGTC....................................................	21	1	1	4.00	4	4	0	0	0	0	0
......................................................................................TGTTAACTGTGAGACTGTGTAT...................................................	22	2	1	4.00	4	1	3	0	0	0	0
......................................................................................TGTGAACTGTAAGACTGCGTCT...................................................	22	2	1	4.00	4	2	2	0	0	0	0
......................................................................................TGTTAACTTTAAGCCTGTGTCT...................................................	22	2	1	4.00	4	3	1	0	0	0	0
......................................................................................TGGCAACTGTAATACTGTGTCT...................................................	22	3	1	4.00	4	4	0	0	0	0	0
......................................................................................TGATAACTGTAAGACTGGGTCT...................................................	22	2	1	4.00	4	4	0	0	0	0	0
.....................................................................................ATGGTAACTGTAAGACTGTGTCT...................................................	23	1	1	4.00	4	4	0	0	0	0	0
......................................................................................TGATAACTGTAAGACTCTGTCT...................................................	22	2	1	4.00	4	3	1	0	0	0	0
......................................................................................TGTTAACTGTGAGAATGTGTCT...................................................	22	2	1	4.00	4	4	0	0	0	0	0
......................................................................................TGTTCACTGTCAGACTGTGTCT...................................................	22	2	1	4.00	4	1	2	0	0	0	1
......................................................................................TATTAACTGTAAGACTGTGT.....................................................	20	1	1	4.00	4	1	0	0	3	0	0
......................................................................................TGCTAACTGTAAGACTGCGTCT...................................................	22	2	1	4.00	4	3	1	0	0	0	0
......................................................................................TGTTAACTGTAAGGCTGTGTC....................................................	21	1	1	4.00	4	0	1	1	2	0	0
......................................................................................TGGTAACTGTAAGACTGTGTCTT..................................................	23	2	1	4.00	4	3	1	0	0	0	0
......................................................................................TGGGAACTGTAAGACTGTCTCT...................................................	22	3	1	4.00	4	2	2	0	0	0	0
......................................................................................TGTGAACTGTAAGAATGTGTCT...................................................	22	2	1	4.00	4	3	1	0	0	0	0
......................................................................................TGTTAACTGTGAGACTGGGTCT...................................................	22	2	1	4.00	4	4	0	0	0	0	0
......................................................................................TGATAACTTTAAGACTGTGTCT...................................................	22	2	1	4.00	4	4	0	0	0	0	0
......................................................................................TGTTAACTGTAAAACTGTGTC....................................................	21	1	1	4.00	4	3	1	0	0	0	0
......................................................................................TGTTGACTGTAGGACTGTGTCT...................................................	22	2	1	4.00	4	4	0	0	0	0	0
......................................................................................TGTTAACTATAAGACTGTGTCG...................................................	22	2	1	4.00	4	1	0	0	0	3	0
......................................................................................TGGTAAGTGTAACACTGTGTCT...................................................	22	3	1	4.00	4	3	1	0	0	0	0
......................................................................................TGTTAACTGTAAGACTGTGCCC...................................................	22	2	1	4.00	4	2	1	0	0	0	1
......................................................................................TTTTAACTGTAAGACTGTGTC....................................................	21	1	1	4.00	4	3	1	0	0	0	0
......................................................................................TGTTAACTGTGAGACCGTGTCT...................................................	22	2	1	4.00	4	1	2	0	1	0	0
........................................................................................TTAACTGTAAGACTGTGT.....................................................	18	0	1	4.00	4	0	0	0	2	2	0
......................................................................................TGTTAACTGTAAGCCTCTGCCT...................................................	22	3	1	4.00	4	4	0	0	0	0	0
......................................................................................TGTTAACTGTAAGACTGTCTC....................................................	21	1	1	4.00	4	1	0	1	1	1	0
......................................................................................TGGTAAGTGTAAGACTGTGGCT...................................................	22	3	1	4.00	4	3	1	0	0	0	0
......................................................................................TGATAACTGTAAGACTGTCTCT...................................................	22	2	1	4.00	4	4	0	0	0	0	0
......................................................................................TGGTAACTTTAAGACTGTGTCT...................................................	22	2	1	4.00	4	3	1	0	0	0	0
......................................................................................CGTTAACTGTAAGACTGTGTCC...................................................	22	2	1	4.00	4	1	0	3	0	0	0
......................................................................................TGTTAACTGTAAGACTGTGTCCA..................................................	23	2	1	4.00	4	0	0	0	0	3	1
......................................................................................TGCTAACTGTAAGACTGTGT.....................................................	20	1	1	4.00	4	3	0	0	1	0	0
......................................................................................TGGTAACTGTAAGACTGTGTGT...................................................	22	2	1	4.00	4	1	3	0	0	0	0
......................................................................................TGTTAAATGTAAGACTGTGGCT...................................................	22	2	1	4.00	4	4	0	0	0	0	0
......................................................................................TGTTAGCTGTAAGACTGTGT.....................................................	20	1	1	4.00	4	2	2	0	0	0	0
......................................................................................TGTTAACTTTGAGACTGTGTCT...................................................	22	2	1	4.00	4	4	0	0	0	0	0
......................................................................................TGTTAAATGTAAGACTGCGTCT...................................................	22	2	1	4.00	4	4	0	0	0	0	0
......................................................................................TCTTAACTGTAAGACTGTGTC....................................................	21	1	1	4.00	4	3	0	1	0	0	0
......................................................................................AGGTAACTGTAAGACTGTGTCT...................................................	22	2	1	4.00	4	4	0	0	0	0	0
......................................................................................TGATAATTGCAAGACTGTGTCT...................................................	22	3	2	3.50	7	3	4	0	0	0	0
......................................................................................TGGTAACTGGAATACTGTGTCT...................................................	22	3	2	3.50	7	5	2	0	0	0	0
......................................................................................TTTTAACTGTAAGACTGTGTCG...................................................	22	2	2	3.50	7	0	0	7	0	0	0
......................................................................................TGGTAACTGTAAGACTGTGTAT...................................................	22	2	2	3.50	7	5	2	0	0	0	0
......................................................................................TGTTAACTGTAAGAATGTGTC....................................................	21	1	1	3.00	3	2	1	0	0	0	0

CGGCGGTCCTCTACACTTCCTCGGGTTTCCTACGGGCGAGTTAATGGTACTGTATCAGCATGCCACTTACAACACATAACCTGGTTACAATTGACATTCTGACACAGAGCCACCAACAGTCGGTTCGTCGTTCGGCTTGGCTTGGCCTTCACCTTCACA **********************************.(((((((((((..(((((((((.((((((.(((((((.((.....))))))))).)))))).)))))))))..))))))))..))).*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M021 embryo
...................................................GGATCAGAATGCCACCTA..........................................................................................	18	3	20	0.05	1	1
.................................................................................................................................GGTCGGGTCGGCTTGGCCTT..........	20	3	20	0.05	1	1

Species	Coordinate	ID	Type	Alignment
droPer2	scaffold_0:305987-306145 -	dpe_7	confident	GCCGCC--AGGA-------------------GATGT-----GAAGG-A----GCCC-AAAGGATG-CCCGCTCAATTACCATGACATAGTCGTACGGTGAATGTTGTGTATTGG--ACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGTCAGCCAAGCAGCAA----------------------------------G----------------------------------------------------------------------------------------------------------------------------------------------------------------CCGAA--------------------CCGA---ACCGGA-----------------------------------------AGTGGAAG-TGT
dp5	2:6480682-6480794 -	dps_134	candidate-rescued	------------------------------------------------------------------------------------CATAGTCGTACGGTGAATGTTGTGTATTGG--ACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGTCAGCCAAGCAGCAA----------------------------------G-----------------------------------------------------------------------------------------------------------------------------------------------------------CCGAACCGAA--------------------CCGC---ACCGGA-----------------------------------------AGTGGAAG-TGT
droWil2	scf2_1100000004943:11672684-11672848 -	dwi_2	confident	GACGACGACG--ACGACG-----------------CC----AACGACA----GCAG-CAAAGATGTCCCGCTCAATTACCATGACATAGTCGTACGGTGAATGTTGTTTA-TGGAGTCCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCAAACAACAA--------------------------------------------------------------------------------------TAGCT--------------------------------------------------------------------------GGAACT-----CC----------AATC-----------------------------------------------------------------------------------AAGGAAG-TGT
droVir3	scaffold_12822:3936704-3936839 -	dvi-mir-999	Known_mirbase	-------------------------------------------------------------------CCGCTCAATTACCGTGACATAGTCGTACGGTGAATGTTGTGTA-TGGAGTCCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGTTAGCTAATCAACAGCGA-------------------------------C----------------------------------------------------------ACATGAGACG-------------C------------------------------T------------------------------------------------G--A--------------------CGGA---AACGCA-----------------------------------------AGTGAAAA-T--
droMoj3	scaffold_6540:17209606-17209743 -	dmo_1	confident	-------------------------------------------------------------------CCGCTCAATTACCGTGACATAGTCGTACGGTGAATGTTGTTTA-TGGAGTCCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGC-AGCCAAACAACAGCGA-------------------------------C----------------------------------------------------------CCCCAAAACA-------------C------------------------------T------------------------------------------------T--T--------------------GACA---AACGGA-----------------------------------------TGTGGAAACCGT
droGri2	scaffold_8129:756-916 -	dgr_1	confident	GCCCAC--AATG-------------------GAT--------AAGG-A---CAAGA-GACAGCAG--TCGCTCAATTACCATGACATAGTCGTACGGTGAATGTTGTGT-TTGGAGTCCAATGTTAACTGTAAGACTGTGTCTTGGTGGTTGCCAGCCAAGCAACAA--------------------------------------------------------------------------------------ACGAT---------------------------------------------------------------------------------------------------------G--A--CCA-C-------------CCAA---AACGGA-----------------------------------------AGCCAAAA-TC-
droAna3	scaffold_13340:8622422-8622641 -	dan_3	confident	GTCGTTGCC----------------------GTTGCCAAAGGA--------CCAAA-AAAGGATG--CCGCTCAATTACCCCGACATAGTCGTACGGTGAATGTTGTGTATTGGAAAGCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCTAGCC----------TACCATCTCACTATCCTGCCAGCCAGCAAG---C------------------------------------------CAGCC---------------------AGCCCC--A-CCAA------------------------------AT-----A------------------------------ATCGCATCGAAA-------------------CCCA---ACCGGATA--C-------------------------------GAGTATGTGGAAG-TGA
droBip1	scf7180000396708:225017-225219 +			GTTGCC-------------------------AAA------GGA--------CCTAA-AAAGGATG--CCGCTCAATTACCCCGACATAGTCGTACGGTGAATGTTGTGTATTGGAAAGCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCTAGCC----------TACCATCCCACTATCCTGCCAGC----CAG-------------------------------------------------CC---------------------AGCCCC--A-CCAA------------------------------AT-----A------------------------------ATCGCATCGAAA-------------------CCCA---ACCGGATA--C-------------------------------GAGCATGTGGAAG-TGA
droKik1	scf7180000302388:1458243-1458456 +			GCCGCCGCTG----------------------TC------GCA--------GGAAT-AAAGGATG--CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCCAGCAACAT----------------------------------GAAGCAAGTGGAGATTGGAGAGTGAAAAGTGGAGAGTGGTGAGTGGA---A-G-AGT---------------------------------------------------------------------------------------------------------GGCAA-------------------CCCA---ACCGGATA--T-------------------------------GGGTATGTGGAAG-TGA
droFic1	scf7180000454106:760270-760523 -			GAGAATGGAA--AAAGTA-----------------G-----AAAGG-AGAGAGGAG-AAAGGATG--CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCCATCAACAATGGCCCAGCAT-------------TAGCCAGCGAC----------------------------------------------------------------------------------TCAAC----------------CAT-----CGCATCCCATCGCA-----TCGTAT-----CC----------TATCGTATCGTAGCGAATCGAATCGAGTCGAGCACA---ACCGGATGTAT-------------------------------AGCTACGTGGAAG-TGA
droEle1	scf7180000491212:2051665-2051904 -			GCCGAC--AACTACAACGACAAAACAACGACAAC------GAACGATA----GAAGAAAAGGATG--CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGCTTGCCAGCCAGCC----------CAGCAA-----------------------T-------------------------------------------------ACA----AT--------------------GTA-TCCAC-------ATCGA-----TT-----TGTATCGCAGCGCA-----TCGTAT-----CC----------TATAGCATCGAA--------------------CCCA---ACCGGATATAT-------------------------------GGGTATGTGGAAG-TGA
droRho1	scf7180000767858:1780-1989 +			GCCGCC-------------------------GAT------GAA--------CGAAG-AAAGGATG--CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCCAGCAACAC--------------------------------------------------------------------------------------A----AT-----------------C--GTA-TCCAC---------------------------A-----TCGAA-----TCGTAT-----CC----------TATCGCATCGAA--------------------CCCA---ACCGGATATATGG---------------ATATATGGAGACATGGGTGTGTGGAAG-TGA
droBia1	scf7180000302402:6491254-6491444 +			GA-------------------------------C------GAA--------CGAAG-AAAGGATG--CCGCTCAATTACCCCGACATAGTCGTACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCCAGCAACAG--------------------------------------------------------------------------------------A----AT-----------------------------------------------------CG--------------------CATCCTATCCCCAGGCCGCATATCGCATCGAA--------------------CCCA---ACCGGATGTATGG---------------GT------------AGGTGTGTGGAAG-TGA
droTak1	scf7180000415711:1522749-1522927 +			C---------------------------------------------------GAAG-AAAGGATG--CCGCTCAATTACCCCGACATAGTCGTACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCTCAGCAACAA--------------------------------------------------------------------------------------A-------------------------AGTA-CCAACT-----------------------CG--------------------TATCCTATCC----------TATCGCATCGAA--------------------CCCA---ACCGGATGTAT-------------------------------AAGTATGTGGAAG-TGA
droEug1	scf7180000409490:921744-921954 -			GCCC----------------------------AT------GAA--------CGAAG-AAAGGATG--CCGCTCAATTACCCTGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCCAGCAACAA--------------------------------------------------------------------------------------T--------------------AACAATGTA-TCAACT-----------------------CGAA-AT-----CA-----TCGTAT-----CC----------TA-----TCGAA--------------------CCCA---AACGGATATATATATACCCTCAGTATATAT------------AGATATGTGGAAG-TGA
dm3	chr3R:17623841-17624077 -	dme-mir-999	Known_mirbase	GCTGT---AGCC-------------------GAT------GAACGG-A----GAAG-AAAGGATG--CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCCAGCCACAC-----------------------------------------------------------------------------------------------------------AGCCCAGTA-TCAACTATACGGATCGCTTCCCTTCGCATCGCA-----TCGCATCGCTTTGAAT-----CC----------TATCGCATCGCAG--------------------CCAA-AACCGGATGTATAT------------------------------GGTATGTGGAAG-TGA
droSim2	3r:17135722-17135956 -	dsi-mir-999	Known_mirbase	GTAGCC-------------------------GAT------GAACGG-A----GAAG-AAAGGATG--CCGCTCAATTACCCCGACATAGTCGTACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCCAGCCACAC-----------------------------------------------------------------------------------------------------------AGCCCAGTA-TCAACTATACGGATCGCTTCCCTTCGCATCGCA-----TCGCATCGCTTTGAAT-----CC----------TATCGCATCGCAG--------------------CCAAAAACCGGATGTATAT------------------------------GGTATGTGGAAG-TGA
droSec2	scaffold_0:17996213-17996448 -	dse_7	confident	GCCACTGTAGTC-------------------GAT------GAACGG-A----GAAG-AAAGGATG--CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCCAGCCACAC-----------------------------------------------------------------------------------------------------------AGCCCAGTA-TCAACTATACGGATCGCTTCCCTT-----CGCATCGCATCG-----CTTTGAAT-----CC----------TATCGCATCGCAG--------------------CCAAAAACCGGATGTATAT------------------------------GGTATGTGGAAG-TGA
droYak3	3R:18443947-18444058 -	dya_4	confident	GAAATC-------------------------G---------------A----GAAG-AAAGGATG--CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2	scaffold_4820:10463196-10463426 +	der_3	confident	GCCGCC-------------------------GAT------GAACGA-A----GAAG-AAAGGATG--CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCCAGCCACAC--------------------------------------------------------------------------------------CAGCC--ACACCAGCCACAGCAGCCCAGTA-TCAACA----------------CT-----CGGATCGCAACG-----CAGTGAAT-----CC----------TATCGCTTCGCAG-------------------CCAA---ACCGGATGTGTGC------------------------------GGTATGTGGAAG-TGA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droPer2

GCCGCC--AGGA-------------------GATGT-----GAAGG-A----GCCC-AAAGGATG-CCCGCTCAATTACCATGACATAGTCGTACGGTGAATGTTGTGTATTGG--ACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGTCAGCCAAGCAGCAA----------------------------------G----------------------------------------------------------------------------------------------------------------------------------------------------------------CCGAA--------------------CCGA---ACCGGA-----------------------------------------AGTGGAAG-TGT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.........................................................................................................................TGTTAACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	22	1	50473.00	50473	6995	4956	1161	15536	16015	5810
.........................................................................................................................TGTTAACTGTAAGACTGTGTC.......................................................................................................................................................................................................................................................................................................................	21	1	4470.00	4470	315	349	45	1268	1944	549
.........................................................................................................................TGTTAACTGTAAGACTGTGT........................................................................................................................................................................................................................................................................................................................	20	1	3077.00	3077	9	154	11	583	1385	935
.........................................................................................................................TGTTAACTGTAAGACTGTGTCC......................................................................................................................................................................................................................................................................................................................	22	1	737.00	737	520	43	8	48	73	45
..........................................................................................................................GTTAACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	21	1	676.00	676	12	492	4	50	34	84
...................................................................................ACATAGTCGTACGGTGAATGTT............................................................................................................................................................................................................................................................................................................................................................	22	1	338.00	338	14	17	3	129	160	15
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTT.....................................................................................................................................................................................................................................................................................................................	23	1	327.00	327	6	24	14	91	107	85
........................................................................................................................ATGTTAACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	23	1	214.00	214	38	11	6	45	90	24
.........................................................................................................................TGTTAACTGTAAGACTGTGTCG......................................................................................................................................................................................................................................................................................................................	22	1	209.00	209	184	9	1	6	8	1
.........................................................................................................................TGTTAACTGTAAGACTGTGTCA......................................................................................................................................................................................................................................................................................................................	22	1	152.00	152	2	46	2	28	62	12
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTA.....................................................................................................................................................................................................................................................................................................................	23	1	134.00	134	11	47	25	18	26	7
...........................................................................................................................TTAACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	20	1	133.00	133	79	36	0	10	4	4
.........................................................................................................................TGTTAACTGTAAGACTGTG.........................................................................................................................................................................................................................................................................................................................	19	1	59.00	59	0	12	0	8	34	5
..........................................................................................................................GTTAACTGTAAGACTGTGTC.......................................................................................................................................................................................................................................................................................................................	20	1	40.00	40	0	29	0	1	3	7
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTC.....................................................................................................................................................................................................................................................................................................................	23	1	34.00	34	0	3	0	4	26	1
.............................................................................................................................AACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	18	1	34.00	34	21	6	0	2	3	2
...................................................................................ACATAGTCGTACGGTGAATGTTG...........................................................................................................................................................................................................................................................................................................................................................	23	1	33.00	33	0	0	0	8	22	3
.........................................................................................................................TGTTAACTGTAAGACTGT..........................................................................................................................................................................................................................................................................................................................	18	1	27.00	27	16	4	1	2	1	3
............................................................................................................................TAACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	19	1	23.00	23	7	6	1	5	2	2
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTAA....................................................................................................................................................................................................................................................................................................................	24	1	23.00	23	0	14	9	0	0	0
..........................................................................................................................GTTAACTGTAAGACTGTGT........................................................................................................................................................................................................................................................................................................................	19	1	23.00	23	0	17	0	1	1	4
.........................................................................................................................TGTTAACTGTAAGACTGTGC........................................................................................................................................................................................................................................................................................................................	20	1	15.00	15	2	0	0	1	10	2
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTAAA...................................................................................................................................................................................................................................................................................................................	25	1	14.00	14	2	7	5	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTTT....................................................................................................................................................................................................................................................................................................................	24	1	11.00	11	1	0	0	4	2	4
.........................................................................................................................TGTTAACTGTAAGACTGTGTA.......................................................................................................................................................................................................................................................................................................................	21	1	10.00	10	0	0	0	4	5	1
.........................................................................................................................TGTTAACTGTAAGACTGTGTT.......................................................................................................................................................................................................................................................................................................................	21	1	9.00	9	0	2	0	1	5	1
.........................................................................................................................TGTTAACTGTAAGACTGTGTCAA.....................................................................................................................................................................................................................................................................................................................	23	1	8.00	8	0	7	0	0	1	0
...........................................................................................................................TTAACTGTAAGACTGTGTCC......................................................................................................................................................................................................................................................................................................................	20	1	7.00	7	7	0	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTG.....................................................................................................................................................................................................................................................................................................................	23	1	7.00	7	0	2	0	1	4	0
.........................................................................................................................TGTTAACTGTAAGACTGTGA........................................................................................................................................................................................................................................................................................................................	20	1	7.00	7	0	0	0	4	2	1
........................................................................................................................ATGTTAACTGTAAGACTGTGT........................................................................................................................................................................................................................................................................................................................	21	1	6.00	6	0	0	0	2	1	3
...................................................................................ACATAGTCGTACGGTGAATGT.............................................................................................................................................................................................................................................................................................................................................................	21	1	5.00	5	0	1	0	1	3	0
.........................................................................................................................TGTTAACTGTAAGACTGTC.........................................................................................................................................................................................................................................................................................................................	19	1	5.00	5	2	1	0	0	0	2
...........................................................................................................................TTAACTGTAAGACTGTGTC.......................................................................................................................................................................................................................................................................................................................	19	1	5.00	5	1	2	0	0	1	1
..........................................................................................................................GTTAACTGTAAGACTGTGTCTT.....................................................................................................................................................................................................................................................................................................................	22	1	5.00	5	0	5	0	0	0	0
..........................................................................................................................GTTAACTGTAAGACTGTGTCTA.....................................................................................................................................................................................................................................................................................................................	22	1	4.00	4	0	3	0	0	1	0
...........................................................................................................................TTAACTGTAAGACTGTGT........................................................................................................................................................................................................................................................................................................................	18	1	4.00	4	0	2	0	0	0	2
.........................................................................................................................TGTTAACTGTAAGACTGTGTCCA.....................................................................................................................................................................................................................................................................................................................	23	1	4.00	4	0	3	1	0	0	0

dp5

------------------------------------------------------------------------------------CATAGTCGTACGGTGAATGTTGTGTATTGG--ACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGTCAGCCAAGCAGCAA----------------------------------G-----------------------------------------------------------------------------------------------------------------------------------------------------------CCGAACCGAA--------------------CCGC---ACCGGA-----------------------------------------AGTGGAAG-TGT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.........................................................................................................................TGTTAACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	22	1	82830.00	82830	717	25847	3778	20962	3464	15349	3359	2678	1381	5295
.........................................................................................................................TGTTAACTGTAAGACTGTGTC.......................................................................................................................................................................................................................................................................................................................	21	1	8683.00	8683	71	1991	232	1348	132	1256	526	673	754	1700
.........................................................................................................................TGTTAACTGTAAGACTGTGTCC......................................................................................................................................................................................................................................................................................................................	22	1	6526.00	6526	34	175	1089	4997	16	42	22	59	72	20
.........................................................................................................................TGTTAACTGTAAGACTGTGT........................................................................................................................................................................................................................................................................................................................	20	1	3474.00	3474	7	902	5	87	34	616	587	246	420	570
..........................................................................................................................GTTAACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	21	1	2643.00	2643	4	2461	7	60	16	41	27	7	4	16
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTT.....................................................................................................................................................................................................................................................................................................................	23	1	450.00	450	0	197	4	12	29	70	53	33	44	8
.........................................................................................................................TGTTAACTGTAAGACTGTG.........................................................................................................................................................................................................................................................................................................................	19	1	346.00	346	0	75	0	1	2	22	4	10	171	61
.........................................................................................................................TGTTAACTGTAAGACTGTGTCA......................................................................................................................................................................................................................................................................................................................	22	1	321.00	321	0	153	5	14	10	19	13	58	44	5
........................................................................................................................ATGTTAACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	23	1	245.00	245	5	41	9	95	6	52	19	1	5	12
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTA.....................................................................................................................................................................................................................................................................................................................	23	1	241.00	241	0	135	0	2	37	21	15	23	8	0
...........................................................................................................................TTAACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	20	1	217.00	217	4	181	0	17	2	4	6	0	0	3
..........................................................................................................................GTTAACTGTAAGACTGTGTC.......................................................................................................................................................................................................................................................................................................................	20	1	201.00	201	0	186	0	3	1	2	3	0	0	6
..........................................................................................................................GTTAACTGTAAGACTGTGT........................................................................................................................................................................................................................................................................................................................	19	1	68.00	68	0	66	0	0	1	0	0	0	0	1
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTC.....................................................................................................................................................................................................................................................................................................................	23	1	55.00	55	0	8	5	7	8	7	1	0	16	3
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTAA....................................................................................................................................................................................................................................................................................................................	24	1	49.00	49	0	28	0	0	14	0	0	7	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGC........................................................................................................................................................................................................................................................................................................................	20	1	45.00	45	0	1	0	40	1	1	1	0	1	0
..........................................................................................................................GTTAACTGTAAGACTGTGTCC......................................................................................................................................................................................................................................................................................................................	21	1	44.00	44	1	26	2	14	0	0	1	0	0	0
............................................................................................................................TAACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	19	1	37.00	37	0	30	0	1	3	1	1	0	1	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTT.......................................................................................................................................................................................................................................................................................................................	21	1	36.00	36	0	8	0	0	0	3	1	2	19	3
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTAAA...................................................................................................................................................................................................................................................................................................................	25	1	30.00	30	1	20	1	0	2	0	0	6	0	0
..........................................................................................................................GTTAACTGTAAGACTGTGTCTT.....................................................................................................................................................................................................................................................................................................................	22	1	24.00	24	0	24	0	0	0	0	0	0	0	0
........................................................................................................................ATGTTAACTGTAAGACTGTGTCC......................................................................................................................................................................................................................................................................................................................	23	1	23.00	23	0	0	4	19	0	0	0	0	0	0
.............................................................................................................................AACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	18	1	22.00	22	0	16	0	5	1	0	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCG......................................................................................................................................................................................................................................................................................................................	22	1	22.00	22	1	3	2	1	1	3	2	3	6	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTTT....................................................................................................................................................................................................................................................................................................................	24	1	22.00	22	0	6	0	0	1	3	6	1	5	0
..........................................................................................................................GTTAACTGTAAGACTGTGTCA......................................................................................................................................................................................................................................................................................................................	21	1	17.00	17	0	16	0	0	0	0	0	1	0	0
.........................................................................................................................TGTTAACTGTAAGACTGT..........................................................................................................................................................................................................................................................................................................................	18	1	16.00	16	0	5	0	0	0	1	1	2	6	1
.........................................................................................................................TGTTAACTGTAAGACTGTGTA.......................................................................................................................................................................................................................................................................................................................	21	1	15.00	15	0	2	0	6	1	0	0	0	4	2
.........................................................................................................................TGTTAACTGTAAGACT............................................................................................................................................................................................................................................................................................................................	16	1	12.00	12	0	0	0	0	0	0	0	5	0	7
...........................................................................................................................TTAACTGTAAGACTGTGTC.......................................................................................................................................................................................................................................................................................................................	19	1	11.00	11	0	8	0	0	0	0	1	0	1	1
.........................................................................................................................TGTTAACTGTAAGACTGTCC........................................................................................................................................................................................................................................................................................................................	20	1	11.00	11	0	1	0	10	0	0	0	0	0	0
..........................................................................................................................GTTAACTGTAAGACTGTGTCTA.....................................................................................................................................................................................................................................................................................................................	22	1	11.00	11	0	11	0	0	0	0	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCAA.....................................................................................................................................................................................................................................................................................................................	23	1	11.00	11	0	9	0	0	0	0	0	1	1	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTG.....................................................................................................................................................................................................................................................................................................................	23	1	11.00	11	0	11	0	0	0	0	0	0	0	0
..........................................................................................................................GTTAACTGTAAGACTGTG.........................................................................................................................................................................................................................................................................................................................	18	1	10.00	10	0	9	0	0	0	0	0	0	0	1
........................................................................................................................ATGTTAACTGTAAGACTGTGTC.......................................................................................................................................................................................................................................................................................................................	22	1	9.00	9	0	4	0	3	0	1	0	0	1	0
.........................................................................................................................TGTTAACTGTAAGACTGTGA........................................................................................................................................................................................................................................................................................................................	20	1	8.00	8	0	2	0	1	0	3	0	0	1	1
...........................................................................................................................TTAACTGTAAGACTGTGTCC......................................................................................................................................................................................................................................................................................................................	20	1	7.00	7	0	1	1	5	0	0	0	0	0	0
........................................................................................................................ATGTTAACTGTAAGACTGTGT........................................................................................................................................................................................................................................................................................................................	21	1	7.00	7	0	0	0	1	0	2	2	1	1	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTAA......................................................................................................................................................................................................................................................................................................................	22	1	6.00	6	0	4	0	0	0	0	0	2	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCAAA....................................................................................................................................................................................................................................................................................................................	24	1	6.00	6	0	6	0	0	0	0	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTTTT...................................................................................................................................................................................................................................................................................................................	25	1	5.00	5	0	0	0	0	0	0	0	0	5	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTAC......................................................................................................................................................................................................................................................................................................................	22	1	5.00	5	0	0	2	3	0	0	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCCA.....................................................................................................................................................................................................................................................................................................................	23	1	5.00	5	0	2	0	0	1	2	0	0	0	0
...........................................................................................................................TTAACTGTAAGACTGTGT........................................................................................................................................................................................................................................................................................................................	18	1	4.00	4	0	3	0	0	0	0	0	0	0	1
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTTAA...................................................................................................................................................................................................................................................................................................................	25	1	4.00	4	0	2	0	0	0	0	0	0	2	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTGC......................................................................................................................................................................................................................................................................................................................	22	1	4.00	4	0	0	0	4	0	0	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCCT.....................................................................................................................................................................................................................................................................................................................	23	1	4.00	4	0	1	0	2	0	0	1	0	0	0
....................................................................................CATAGTCGTACGGTGAATGTT............................................................................................................................................................................................................................................................................................................................................................	21	1	4.00	4	0	3	0	0	0	1	0	0	0	0
..........................................................................................................................GTTAACTGTAAGACTGTGTCAA.....................................................................................................................................................................................................................................................................................................................	22	1	4.00	4	0	4	0	0	0	0	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTTA....................................................................................................................................................................................................................................................................................................................	24	1	4.00	4	0	0	1	0	0	0	0	0	2	1
.........................................................................................................................TGTTAACTGTAAGACTGTT.........................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	2	0	0	0	1	0	0	0	0

droWil2

GACGACGACG--ACGACG-----------------CC----AACGACA----GCAG-CAAAGATGTCCCGCTCAATTACCATGACATAGTCGTACGGTGAATGTTGTTTA-TGGAGTCCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCAAACAACAA--------------------------------------------------------------------------------------TAGCT--------------------------------------------------------------------------GGAACT-----CC----------AATC-----------------------------------------------------------------------------------AAGGAAG-TGT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.........................................................................................................................TGTTAACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	22	1	482108.00	482108	354576	9140	7467	15994	94931
.........................................................................................................................TGTTAACTGTAAGACTGTGTCC......................................................................................................................................................................................................................................................................................................................	22	1	31935.00	31935	31701	28	17	49	140
.........................................................................................................................TGTTAACTGTAAGACTGTGTCG......................................................................................................................................................................................................................................................................................................................	22	1	5759.00	5759	5748	0	2	3	6
.........................................................................................................................TGTTAACTGTAAGACTGTGTC.......................................................................................................................................................................................................................................................................................................................	21	1	4948.00	4948	3969	68	107	179	625
...........................................................................................................................TTAACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	20	1	3791.00	3791	3572	72	8	17	122
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTT.....................................................................................................................................................................................................................................................................................................................	23	1	1888.00	1888	411	30	45	237	1165
..........................................................................................................................GTTAACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	21	1	1631.00	1631	371	883	19	24	334
........................................................................................................................ATGTTAACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	23	1	1033.00	1033	775	9	16	84	149
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTA.....................................................................................................................................................................................................................................................................................................................	23	1	848.00	848	105	49	22	345	327
.........................................................................................................................TGTTAACTGTAAGACTGTGT........................................................................................................................................................................................................................................................................................................................	20	1	509.00	509	52	9	77	61	310
...................................................................................ACATAGTCGTACGGTGAATGTT............................................................................................................................................................................................................................................................................................................................................................	22	1	433.00	433	188	14	4	122	105
...........................................................................................................................TTAACTGTAAGACTGTGTCC......................................................................................................................................................................................................................................................................................................................	20	1	342.00	342	342	0	0	0	0
............................................................................................................................TAACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	19	1	321.00	321	248	10	3	2	58
.............................................................................................................................AACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	18	1	203.00	203	143	4	3	5	48
.........................................................................................................................TGTTAACTGTAAGACTGTGTCA......................................................................................................................................................................................................................................................................................................................	22	1	104.00	104	38	10	1	9	46
.........................................................................................................................TGTTAACTGTAAGACTGTCC........................................................................................................................................................................................................................................................................................................................	20	1	88.00	88	88	0	0	0	0
........................................................................................................................ATGTTAACTGTAAGACTGTGTCC......................................................................................................................................................................................................................................................................................................................	23	1	80.00	80	79	0	0	1	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTTT....................................................................................................................................................................................................................................................................................................................	24	1	77.00	77	6	0	4	8	59
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTAA....................................................................................................................................................................................................................................................................................................................	24	1	67.00	67	0	5	1	60	1
...........................................................................................................................TTAACTGTAAGACTGTGTCG......................................................................................................................................................................................................................................................................................................................	20	1	66.00	66	65	1	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTC.....................................................................................................................................................................................................................................................................................................................	23	1	37.00	37	16	1	0	5	15
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTAAA...................................................................................................................................................................................................................................................................................................................	25	1	30.00	30	0	7	2	21	0
..........................................................................................................................GTTAACTGTAAGACTGTGTCC......................................................................................................................................................................................................................................................................................................................	21	1	28.00	28	27	1	0	0	0
............................................................................................................................TAACTGTAAGACTGTGTCC......................................................................................................................................................................................................................................................................................................................	19	1	28.00	28	28	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGT..........................................................................................................................................................................................................................................................................................................................	18	1	24.00	24	18	4	1	1	0
...........................................................................................................................TTAACTGTAAGACTGTGTC.......................................................................................................................................................................................................................................................................................................................	19	1	21.00	21	19	0	0	0	2
........................................................................................................................ATGTTAACTGTAAGACTGTGTCG......................................................................................................................................................................................................................................................................................................................	23	1	18.00	18	18	0	0	0	0
..........................................................................................................................GTTAACTGTAAGACTGTGTCTT.....................................................................................................................................................................................................................................................................................................................	22	1	18.00	18	1	9	0	2	6
.........................................................................................................................TGTTAACTGTAAGACTGTCG........................................................................................................................................................................................................................................................................................................................	20	1	18.00	18	18	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTG.....................................................................................................................................................................................................................................................................................................................	23	1	17.00	17	4	2	0	0	11
........................................................................................................................ATGTTAACTGTAAGACTGTGTC.......................................................................................................................................................................................................................................................................................................................	22	1	17.00	17	10	0	0	3	4
.........................................................................................................................TGTTAACTGTAAGACTGTG.........................................................................................................................................................................................................................................................................................................................	19	1	16.00	16	6	1	1	1	7
.............................................................................................................................AACTGTAAGACTGTGTCC......................................................................................................................................................................................................................................................................................................................	18	1	14.00	14	13	1	0	0	0
...................................................................................ACATAGTCGTACGGTGAATGT.............................................................................................................................................................................................................................................................................................................................................................	21	1	14.00	14	4	4	2	2	2
.........................................................................................................................TGTTAACTGTAAGACTGTGTGG......................................................................................................................................................................................................................................................................................................................	22	1	13.00	13	13	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTAC......................................................................................................................................................................................................................................................................................................................	22	1	13.00	13	13	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGG........................................................................................................................................................................................................................................................................................................................	20	1	12.00	12	11	0	0	0	1
...................................................................................ACATAGTCGTACGGTGAATGTTG...........................................................................................................................................................................................................................................................................................................................................................	23	1	11.00	11	0	0	0	8	3
..........................................................................................................................GTTAACTGTAAGACTGTGTC.......................................................................................................................................................................................................................................................................................................................	20	1	9.00	9	2	6	0	0	1
.........................................................................................................................TGTTAACTGTAAGACTGTC.........................................................................................................................................................................................................................................................................................................................	19	1	8.00	8	5	0	1	1	1
.........................................................................................................................TGTTAACTGTAAGACTGTGTCCT.....................................................................................................................................................................................................................................................................................................................	23	1	7.00	7	4	0	2	0	1
.......................................................................................................................AATGTTAACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	24	1	6.00	6	6	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTTCT.....................................................................................................................................................................................................................................................................................................................	23	1	6.00	6	0	0	0	1	5
............................................................................................................................TAACTGTAAGACTGTGTCG......................................................................................................................................................................................................................................................................................................................	19	1	6.00	6	6	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTA.......................................................................................................................................................................................................................................................................................................................	21	1	6.00	6	1	0	0	0	5
.........................................................................................................................TGTTAACTGTAAGACTGTGTGC......................................................................................................................................................................................................................................................................................................................	22	1	5.00	5	5	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTAA......................................................................................................................................................................................................................................................................................................................	22	1	5.00	5	2	0	2	1	0
............................................................................................................................TAACTGTAAGACTGTGTC.......................................................................................................................................................................................................................................................................................................................	18	1	5.00	5	5	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTCT....................................................................................................................................................................................................................................................................................................................	24	1	5.00	5	1	0	0	1	3
.........................................................................................................................TGTTAACTGTAAGACTGTGTTC......................................................................................................................................................................................................................................................................................................................	22	1	5.00	5	5	0	0	0	0

droVir3

-------------------------------------------------------------------CCGCTCAATTACCGTGACATAGTCGTACGGTGAATGTTGTGTA-TGGAGTCCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGTTAGCTAATCAACAGCGA-------------------------------C----------------------------------------------------------ACATGAGACG-------------C------------------------------T------------------------------------------------G--A--------------------CGGA---AACGCA-----------------------------------------AGTGAAAA-T--	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells	SRR2096013 Ovary_Strain_9_oxidized	SRR2096014 Ovary_Strain_160_oxidized	SRR2096026 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096038 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096050 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096055 Ovary_Min_43	SRR2096056 Ovary_Min_46	SRR2096057 Ovary_Min_50	SRR2096058 Ovary_Min_98	SRR2096059 Ovary_Min_164	SRR2096060 Ovary_Min_193	SRR2096061 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096072 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096079 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096080 embryo_0-2h from 15to16 day old nondysgenic mothers	SRR2096081 embryo_0-2h from 15to16 day old nondysgenic mothers
.........................................................................................................................TGTTAACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	22	1	507491.00	507491	1453	51031	7312	9494	499	420	1376	701	1034	837	396	429	1907	1327	2714	1433	493	1079	1150	525	494	920	1177	1136	780	724	2034	1691	1243	1447	564	1620	907	321	700	1645	883	912	409	702	475	1103	916	753	518	1048	821	767	1442	907	1767	1371	825	1085	844	515	348	3075	7178	3043	14395	4127	6	968	1206	52014	51229	17152	23169	22705	15116	12828	21164	14697	7552	18848	18655	37401	39539
.........................................................................................................................TGTTAACTGTAAGACTGTGTCC......................................................................................................................................................................................................................................................................................................................	22	1	10087.00	10087	125	6499	12	2000	5	7	10	2	8	7	1	0	3	2	2	2	0	1	0	0	14	3	1	14	6	3	10	14	15	12	10	28	5	2	8	17	9	11	3	10	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	1	5	2	29	7	0	4	1	223	182	90	53	54	32	27	62	37	35	48	51	114	146
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTA.....................................................................................................................................................................................................................................................................................................................	23	1	7866.00	7866	2	15	44	1	60	12	174	32	374	47	155	87	510	325	2	0	1	4	0	1	10	0	3	182	144	86	225	155	25	22	12	39	147	11	153	220	278	197	193	14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	91	26	13	0	70	53	669	653	280	90	83	66	71	75	96	219	242	247	395	463
.........................................................................................................................TGTTAACTGTAAGACTGTGTC.......................................................................................................................................................................................................................................................................................................................	21	1	5111.00	5111	24	843	77	217	9	26	23	22	21	38	9	5	17	29	28	18	11	31	20	13	38	14	24	39	15	24	39	27	56	57	35	85	36	27	29	45	19	26	15	39	1	6	7	4	2	9	7	6	13	3	14	13	7	10	4	5	3	20	45	10	246	64	0	5	12	315	374	162	156	153	113	104	157	114	106	105	99	234	233
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTT.....................................................................................................................................................................................................................................................................................................................	23	1	4027.00	4027	3	77	64	28	56	24	121	18	146	47	114	15	62	65	39	24	14	48	20	11	9	30	60	79	56	52	100	109	30	31	8	35	42	12	41	62	76	47	81	11	0	2	0	2	0	1	0	0	1	0	1	0	0	1	1	0	0	2	4	70	211	58	0	58	47	239	218	132	114	112	74	79	93	96	65	46	55	134	144
.........................................................................................................................TGTTAACTGTAAGACTGTGTCG......................................................................................................................................................................................................................................................................................................................	22	1	2008.00	2008	57	1540	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	1	0	0	0	0	0	0	0	1	1	4	1	0	0	2	2	2	0	2	0	0	4	2	1	0	2	0	8	20	0	14	6	0	2	0	6	7	3	26	34	28	17	36	47	2	16	21	48	41
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTAA....................................................................................................................................................................................................................................................................................................................	24	1	1837.00	1837	0	0	8	0	18	5	40	1	42	4	23	9	69	31	0	1	0	0	0	0	2	0	0	46	39	29	69	28	6	5	1	14	92	1	54	123	227	79	99	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	33	3	2	0	19	9	137	125	44	7	10	0	2	5	5	32	45	40	74	76
........................................................................................................................ATGTTAACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	23	1	1786.00	1786	15	481	15	37	0	1	9	6	5	8	9	1	3	1	23	9	4	10	16	4	3	14	15	5	1	3	6	7	3	4	7	3	2	2	1	3	5	4	2	1	1	0	0	1	1	0	1	2	6	2	8	8	3	2	3	1	0	4	30	10	79	32	0	7	3	75	67	38	118	115	50	59	96	83	17	15	14	44	43
..........................................................................................................................GTTAACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	21	1	1384.00	1384	7	68	741	9	1	0	5	0	10	11	3	1	6	6	6	3	1	3	6	2	3	1	3	3	3	4	2	4	2	2	4	7	2	7	3	4	1	1	0	4	1	1	1	1	0	1	1	0	1	0	0	0	0	0	0	0	0	2	1	5	21	26	0	2	3	35	46	26	39	32	25	14	30	21	11	14	10	30	35
.........................................................................................................................TGTTAACTGTAAGACTGTGT........................................................................................................................................................................................................................................................................................................................	20	1	1340.00	1340	1	27	16	3	2	38	8	18	14	90	3	1	4	3	0	1	4	4	2	1	56	2	4	17	7	3	8	7	83	115	51	139	7	42	5	14	13	4	5	90	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	4	162	42	0	12	15	43	40	15	0	2	0	0	2	2	10	13	10	30	25
.........................................................................................................................TGTTAACTGTAAGACTGTGTCA......................................................................................................................................................................................................................................................................................................................	22	1	1192.00	1192	1	9	9	11	5	0	14	2	1	0	0	0	5	4	2	1	0	2	1	1	1	3	1	8	12	7	22	9	5	2	4	11	24	0	15	18	18	17	19	3	0	0	1	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	1	5	19	6	0	15	3	218	224	85	6	7	4	4	3	5	43	48	42	97	87
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTAAA...................................................................................................................................................................................................................................................................................................................	25	1	1086.00	1086	0	0	18	0	10	0	10	0	8	0	1	1	22	5	0	0	0	0	0	1	0	0	0	18	36	17	65	19	2	2	0	2	54	1	28	75	168	31	89	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	30	8	91	112	16	0	0	1	1	1	0	13	19	21	40	44
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTTA....................................................................................................................................................................................................................................................................................................................	24	1	560.00	560	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	1	2	1	1	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	2	103	93	40	17	21	18	10	9	7	11	21	40	67	87
...........................................................................................................................TTAACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	20	1	553.00	553	9	378	40	2	0	2	1	0	0	1	0	0	1	0	0	1	0	0	0	1	1	1	1	1	1	0	0	0	1	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	6	3	0	0	0	6	3	0	0	0	7	7	2	12	20	4	16	4	8	3	0	2	2	3
...................................................................................ACATAGTCGTACGGTGAATGTT............................................................................................................................................................................................................................................................................................................................................................	22	1	410.00	410	2	6	17	13	21	2	17	0	3	0	0	0	0	0	24	5	7	11	9	7	5	8	13	7	7	2	7	7	6	2	3	10	0	1	2	0	0	1	6	4	0	0	0	0	0	0	1	1	1	0	0	1	0	0	2	1	1	0	4	2	17	4	0	9	19	2	2	3	15	24	16	10	19	18	1	2	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTC.....................................................................................................................................................................................................................................................................................................................	23	1	268.00	268	1	0	4	0	6	14	9	1	0	5	2	0	2	1	2	3	0	0	1	1	13	0	1	6	1	1	4	4	18	7	10	22	3	10	0	0	1	1	3	24	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	11	2	0	1	3	11	15	3	1	2	3	1	2	5	1	2	7	5	6
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTTT....................................................................................................................................................................................................................................................................................................................	24	1	226.00	226	0	5	5	0	1	0	5	3	3	5	0	0	3	2	2	1	1	4	1	0	1	2	3	2	3	1	9	8	3	3	3	3	7	0	3	7	3	3	5	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19	7	8	0	2	5	5	8	4	7	10	6	5	8	2	3	1	4	4	7
.........................................................................................................................TGTTAACTGTAAGACTGTG.........................................................................................................................................................................................................................................................................................................................	19	1	148.00	148	0	3	3	0	0	1	0	3	0	6	1	0	0	0	1	1	0	2	0	0	5	0	0	0	0	0	1	2	10	16	12	26	0	6	0	1	0	0	0	9	0	0	1	0	0	0	1	0	2	0	0	0	0	0	0	0	0	1	3	0	10	0	0	1	1	4	2	0	0	2	1	1	3	2	0	0	1	2	1
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTTC....................................................................................................................................................................................................................................................................................................................	24	1	123.00	123	2	2	2	1	1	2	1	0	0	2	0	0	1	0	0	0	0	0	0	0	7	0	1	3	1	0	0	0	10	3	3	9	0	3	0	0	0	0	0	6	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	3	6	2	4	6	5	5	10	11	1	4	0	4	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCAA.....................................................................................................................................................................................................................................................................................................................	23	1	109.00	109	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	3	3	5	2	0	3	0	0	1	0	2	4	5	5	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	4	0	26	13	3	0	0	1	0	0	1	3	3	3	5	4
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTCC....................................................................................................................................................................................................................................................................................................................	24	1	109.00	109	9	1	4	0	1	9	1	0	0	0	0	0	0	0	0	0	0	0	0	0	11	0	0	2	0	1	0	2	11	0	2	11	0	3	0	0	0	0	3	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	1	0	2	1	10	4	5	4	0	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTG.....................................................................................................................................................................................................................................................................................................................	23	1	99.00	99	0	1	2	0	2	0	5	0	2	0	1	0	0	0	0	0	0	0	0	0	3	0	0	7	1	1	1	0	1	2	0	1	1	0	2	3	0	3	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	1	0	13	9	1	0	0	1	0	0	0	1	2	4	7	8
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTTAA...................................................................................................................................................................................................................................................................................................................	25	1	72.00	72	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	5	2	0	0	0	0	7	0	3	6	10	6	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	9	4	1	0	1	1	1	0	0	1	0	2	3	0
............................................................................................................................TAACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	19	1	70.00	70	1	19	11	0	2	0	1	0	0	1	0	0	1	0	3	0	0	0	0	0	0	0	2	2	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	3	0	3	1	2	4	4	3	0	2	0	0	0	0	0	1
........................................................................................................................ATGTTAACTGTAAGACTGTGTCC......................................................................................................................................................................................................................................................................................................................	23	1	66.00	66	2	57	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................AACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	18	1	63.00	63	0	13	7	0	1	0	3	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	1	0	0	0	5	5	3	0	0	3	2	2	4	2	0	0	1	2
...........................................................................................................................TTAACTGTAAGACTGTGTCC......................................................................................................................................................................................................................................................................................................................	20	1	61.00	61	1	57	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCCA.....................................................................................................................................................................................................................................................................................................................	23	1	57.00	57	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	3	0	0	3	0	1	1	0	1	0	0	1	0	0	2	3	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	7	9	2	0	0	0	0	0	0	0	2	3	5	7
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTAT....................................................................................................................................................................................................................................................................................................................	24	1	55.00	55	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	3	2	1	0	0	3	0	0	1	0	2	1	5	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	7	10	0	0	0	0	0	0	0	3	1	1	2	3
.........................................................................................................................TGTTAACTGTAAGACTGTGTCCT.....................................................................................................................................................................................................................................................................................................................	23	1	49.00	49	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	4	2	1	5	8	1	1	4	6	1	1	4	2	4
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTTTA...................................................................................................................................................................................................................................................................................................................	25	1	44.00	44	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	1	0	2	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	2	5	0	3	9	2	0	5	1	1	0	1	3	1
.........................................................................................................................TGTTAACTGTAAGACTG...........................................................................................................................................................................................................................................................................................................................	17	1	44.00	44	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	2	1	2	0	2	1	1	3	1	0	0	3	3	0	2	12	0	0	0	0	0	0	2	1	1	0	0	0	0	0	0	3	0	0	2	0
...................................................................................ACATAGTCGTACGGTGAATGTTG...........................................................................................................................................................................................................................................................................................................................................................	23	1	42.00	42	0	0	1	1	0	0	1	1	2	0	0	0	0	0	4	0	1	1	2	3	0	1	2	0	0	1	1	0	1	0	1	0	0	1	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	2	0	1	0	1	0	0	0	0	0	0	0	0	1	0	0	0	1
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTCA....................................................................................................................................................................................................................................................................................................................	24	1	36.00	36	0	0	0	0	0	1	1	0	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	1	1	0	1	1	0	0	0	0	0	0	0	4	3	0	3	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	1	3	4	0	0	0	1	0	0	1	1	0	0	2
.........................................................................................................................TGTTAACTGTAAGACTGT..........................................................................................................................................................................................................................................................................................................................	18	1	34.00	34	0	6	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	1	2	1	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	3	3	4	0	1	0	0	0	1	0	0	0	1	2
........................................................................................................................ATGTTAACTGTAAGACTGTGTC.......................................................................................................................................................................................................................................................................................................................	22	1	29.00	29	0	12	0	2	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	1	0	0	0	0	1	2	1	3	0	0	0	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTTTT...................................................................................................................................................................................................................................................................................................................	25	1	24.00	24	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	1	0	1	1	4	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	1	1	1	2	0	0	0	0	0	0	2	1
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTATA...................................................................................................................................................................................................................................................................................................................	25	1	22.00	22	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	5	1	1	0	0	1	1	0	2	0	0	1	1
........................................................................................................................ATGTTAACTGTAAGACTGTGTCG......................................................................................................................................................................................................................................................................................................................	23	1	20.00	20	0	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTCAA...................................................................................................................................................................................................................................................................................................................	25	1	17.00	17	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	2	0	1	3	1	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1
.........................................................................................................................TGTTAACTGTAAGACTGTCC........................................................................................................................................................................................................................................................................................................................	20	1	16.00	16	0	13	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................ACATAGTCGTACGGTGAATGT.............................................................................................................................................................................................................................................................................................................................................................	21	1	15.00	15	0	0	4	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	4	0	0	0	2	0	0	1	0	0	0	0	0	0	0
..........................................................................................................................GTTAACTGTAAGACTGTGTCC......................................................................................................................................................................................................................................................................................................................	21	1	14.00	14	1	9	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................GTTAACTGTAAGACTGTGTCTT.....................................................................................................................................................................................................................................................................................................................	22	1	14.00	14	0	0	5	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	2	2	0	0	0	0	0	0	2	0	0	0	0
..........................................................................................................................GTTAACTGTAAGACTGTGTC.......................................................................................................................................................................................................................................................................................................................	20	1	13.00	13	0	0	6	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	2	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCAAA....................................................................................................................................................................................................................................................................................................................	24	2	13.00	26	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	2	0	0	0	7	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	3	2	0	0	0	0	0	0	0	1	0	0	2
...........................................................................................................................TTAACTGTAAGACTGTGTCG......................................................................................................................................................................................................................................................................................................................	20	1	12.00	12	0	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTAA......................................................................................................................................................................................................................................................................................................................	22	1	12.00	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	3	0	0	0	0	0	0	0	0	0	1	1
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTCCC...................................................................................................................................................................................................................................................................................................................	25	1	10.00	10	4	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..............................................................................................................................ACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	17	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	1	1	1	2	0	0	0	0	0	0	2	0	0	0	1
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTTCA...................................................................................................................................................................................................................................................................................................................	25	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	1	0	0	2	2	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTAC....................................................................................................................................................................................................................................................................................................................	24	1	10.00	10	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	2	0	0	0	0	0	1	0	0	1	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTT.......................................................................................................................................................................................................................................................................................................................	21	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................GTTAACTGTAAGACTGTGTCTA.....................................................................................................................................................................................................................................................................................................................	22	1	9.00	9	0	0	2	0	0	0	0	0	0	0	1	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
.........................................................................................................................TGTTAACTGTAAGACTGTGA........................................................................................................................................................................................................................................................................................................................	20	1	9.00	9	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	1	0	0	0	0	0	0	0	0	1	1	1	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTCT....................................................................................................................................................................................................................................................................................................................	24	1	9.00	9	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	1	2	0
.........................................................................................................................TGTTAACTGTAAGACTGTGG........................................................................................................................................................................................................................................................................................................................	20	1	9.00	9	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
........................................................................................................................ATGTTAACTGTAAGACTGTGTCTA.....................................................................................................................................................................................................................................................................................................................	24	1	8.00	8	0	0	0	0	0	0	3	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTCCA...................................................................................................................................................................................................................................................................................................................	25	1	8.00	8	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	1	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTA.......................................................................................................................................................................................................................................................................................................................	21	1	8.00	8	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTCCT...................................................................................................................................................................................................................................................................................................................	25	1	8.00	8	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	1	2	0	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTTCC...................................................................................................................................................................................................................................................................................................................	25	1	7.00	7	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droMoj3

-------------------------------------------------------------------CCGCTCAATTACCGTGACATAGTCGTACGGTGAATGTTGTTTA-TGGAGTCCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGC-AGCCAAACAACAGCGA-------------------------------C----------------------------------------------------------CCCCAAAACA-------------C------------------------------T------------------------------------------------T--T--------------------GACA---AACGGA-----------------------------------------TGTGGAAACCGT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.........................................................................................................................TGTTAACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	22	1	72344.00	72344	13168	2048	10642	18663	21374	6449
.........................................................................................................................TGTTAACTGTAAGACTGTGTCC......................................................................................................................................................................................................................................................................................................................	22	1	5784.00	5784	18	2	15	26	5713	10
..........................................................................................................................GTTAACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	21	1	1394.00	1394	1262	11	19	27	38	37
.........................................................................................................................TGTTAACTGTAAGACTGTGTC.......................................................................................................................................................................................................................................................................................................................	21	1	1178.00	1178	79	9	160	305	510	115
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTT.....................................................................................................................................................................................................................................................................................................................	23	1	996.00	996	88	80	272	453	34	69
.........................................................................................................................TGTTAACTGTAAGACTGTGT........................................................................................................................................................................................................................................................................................................................	20	1	515.00	515	17	5	143	271	7	72
...................................................................................ACATAGTCGTACGGTGAATGTT............................................................................................................................................................................................................................................................................................................................................................	22	1	312.00	312	28	12	17	27	204	24
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTA.....................................................................................................................................................................................................................................................................................................................	23	1	262.00	262	73	56	36	46	13	38
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTC.....................................................................................................................................................................................................................................................................................................................	23	1	177.00	177	37	8	20	37	45	30
........................................................................................................................ATGTTAACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	23	1	125.00	125	18	4	18	38	31	16
...........................................................................................................................TTAACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	20	1	96.00	96	66	0	3	4	16	7
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTTT....................................................................................................................................................................................................................................................................................................................	24	1	68.00	68	0	5	19	38	0	6
.........................................................................................................................TGTTAACTGTAAGACTGTGTCA......................................................................................................................................................................................................................................................................................................................	22	1	63.00	63	15	2	8	16	17	5
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTG.....................................................................................................................................................................................................................................................................................................................	23	1	50.00	50	8	0	13	25	1	3
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTAA....................................................................................................................................................................................................................................................................................................................	24	1	43.00	43	13	16	0	2	3	9
.........................................................................................................................TGTTAACTGTAAGACTGTG.........................................................................................................................................................................................................................................................................................................................	19	1	32.00	32	7	1	7	14	2	1
............................................................................................................................TAACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	19	1	30.00	30	16	0	2	3	7	2
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTAAA...................................................................................................................................................................................................................................................................................................................	25	1	25.00	25	18	0	0	0	0	7
...................................................................................ACATAGTCGTACGGTGAATGT.............................................................................................................................................................................................................................................................................................................................................................	21	1	20.00	20	7	0	1	2	9	1
.........................................................................................................................TGTTAACTGTAAGACTGTCC........................................................................................................................................................................................................................................................................................................................	20	1	16.00	16	0	0	0	0	16	0
..........................................................................................................................GTTAACTGTAAGACTGTGTCC......................................................................................................................................................................................................................................................................................................................	21	1	15.00	15	1	0	0	0	12	2
..........................................................................................................................GTTAACTGTAAGACTGTGTC.......................................................................................................................................................................................................................................................................................................................	20	1	13.00	13	10	0	0	1	1	1
...................................................................................ACATAGTCGTACGGTGAATGTC............................................................................................................................................................................................................................................................................................................................................................	22	1	13.00	13	0	0	0	0	13	0
.............................................................................................................................AACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	18	1	12.00	12	6	0	0	0	5	1
.........................................................................................................................TGTTAACTGTAAGACTGTGTCG......................................................................................................................................................................................................................................................................................................................	22	1	11.00	11	1	0	2	5	2	1
..........................................................................................................................GTTAACTGTAAGACTGTGTCTT.....................................................................................................................................................................................................................................................................................................................	22	1	9.00	9	9	0	0	0	0	0
...................................................................................ACATAGTCGTACGGTGAATG..............................................................................................................................................................................................................................................................................................................................................................	20	1	7.00	7	2	0	0	1	1	3
.........................................................................................................................TGTTAACTGTAAGACTGTGTGC......................................................................................................................................................................................................................................................................................................................	22	1	7.00	7	0	1	0	0	6	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTAC......................................................................................................................................................................................................................................................................................................................	22	1	7.00	7	0	0	0	2	5	0
...........................................................................................................................TTAACTGTAAGACTGTGTCC......................................................................................................................................................................................................................................................................................................................	20	1	6.00	6	1	0	0	0	5	0
..........................................................................................................................GTTAACTGTAAGACTGTGTCTA.....................................................................................................................................................................................................................................................................................................................	22	1	6.00	6	6	0	0	0	0	0
........................................................................................................................ATGTTAACTGTAAGACTGTGTCC......................................................................................................................................................................................................................................................................................................................	23	1	5.00	5	0	0	0	0	5	0
..........................................................................................................................GTTAACTGTAAGACTGTGTCTAA....................................................................................................................................................................................................................................................................................................................	23	1	5.00	5	5	0	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGT..........................................................................................................................................................................................................................................................................................................................	18	1	5.00	5	0	0	2	3	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTTC....................................................................................................................................................................................................................................................................................................................	24	1	4.00	4	0	1	0	1	0	2

droGri2

GCCCAC--AATG-------------------GAT--------AAGG-A---CAAGA-GACAGCAG--TCGCTCAATTACCATGACATAGTCGTACGGTGAATGTTGTGT-TTGGAGTCCAATGTTAACTGTAAGACTGTGTCTTGGTGGTTGCCAGCCAAGCAACAA--------------------------------------------------------------------------------------ACGAT---------------------------------------------------------------------------------------------------------G--A--CCA-C-------------CCAA---AACGGA-----------------------------------------AGCCAAAA-TC-	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.........................................................................................................................TGTTAACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	22	2	1880.00	3760	1455	2305
..........................................................................................................................GTTAACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	21	2	89.00	178	170	8
.........................................................................................................................TGTTAACTGTAAGACTGTGTC.......................................................................................................................................................................................................................................................................................................................	21	2	56.00	112	30	82
.........................................................................................................................TGTTAACTGTAAGACTGTGT........................................................................................................................................................................................................................................................................................................................	20	2	47.00	94	24	70
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTT.....................................................................................................................................................................................................................................................................................................................	23	2	23.00	46	13	33
.........................................................................................................................TGTTAACTGTAAGACTGTGTCC......................................................................................................................................................................................................................................................................................................................	22	2	6.50	13	1	12
...................................................................................ACATAGTCGTACGGTGAATGTT............................................................................................................................................................................................................................................................................................................................................................	22	2	6.00	12	10	2
...........................................................................................................................TTAACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	20	2	5.50	11	9	2
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTA.....................................................................................................................................................................................................................................................................................................................	23	2	5.00	10	1	9
........................................................................................................................ATGTTAACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	23	2	4.00	8	4	4
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTTT....................................................................................................................................................................................................................................................................................................................	24	2	3.00	6	0	6
..............................................................CAG--TCGCTCAATTACCATG..................................................................................................................................................................................................................................................................................................................................................................................	19	2	2.00	4	4	0
...................................................................................ACATAGTCGTACGGTGAATGTTG...........................................................................................................................................................................................................................................................................................................................................................	23	2	1.50	3	0	3
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTC.....................................................................................................................................................................................................................................................................................................................	23	2	1.50	3	0	3
..........................................................................................................................GTTAACTGTAAGACTGTGTC.......................................................................................................................................................................................................................................................................................................................	20	2	1.50	3	3	0
..........................................................................................................................GTTAACTGTAAGACTGTGT........................................................................................................................................................................................................................................................................................................................	19	2	1.00	2	2	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTG.....................................................................................................................................................................................................................................................................................................................	23	2	1.00	2	2	0
...........................................................................................................................TTAACTGTAAGACTGTGTCC......................................................................................................................................................................................................................................................................................................................	20	2	1.00	2	1	1
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTCC....................................................................................................................................................................................................................................................................................................................	24	2	1.00	2	0	2
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTTAA...................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	1	0
.............................................................GCAG--TCGCTCAATTACCATG..................................................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	1	0
..........................................................................................................................GTTAACTGTAAGACTGTGTCTGC....................................................................................................................................................................................................................................................................................................................	23	2	0.50	1	1	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCA......................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	1	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTCCC...................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	1
.........................................................................................................................TGTTAACTGTAAGACTGT..........................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	1	0
...................................................................................ACATAGTCGTACGGTGAATG..............................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	1	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTACA...................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	1	0

droAna3

GTCGTTGCC----------------------GTTGCCAAAGGA--------CCAAA-AAAGGATG--CCGCTCAATTACCCCGACATAGTCGTACGGTGAATGTTGTGTATTGGAAAGCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCTAGCC----------TACCATCTCACTATCCTGCCAGCCAGCAAG---C------------------------------------------CAGCC---------------------AGCCCC--A-CCAA------------------------------AT-----A------------------------------ATCGCATCGAAA-------------------CCCA---ACCGGATA--C-------------------------------GAGTATGTGGAAG-TGA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.........................................................................................................................TGTTAACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	22	1	91653.00	91653	3618	2745	461	15349	10726	58754
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTT.....................................................................................................................................................................................................................................................................................................................	23	1	5606.00	5606	105	23	49	812	712	3905
.........................................................................................................................TGTTAACTGTAAGACTGTGTC.......................................................................................................................................................................................................................................................................................................................	21	1	1066.00	1066	39	94	4	190	153	586
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTTT....................................................................................................................................................................................................................................................................................................................	24	1	1060.00	1060	7	1	2	134	183	733
.........................................................................................................................TGTTAACTGTAAGACTGTGTCC......................................................................................................................................................................................................................................................................................................................	22	1	1012.00	1012	12	911	1	24	13	51
..........................................................................................................................GTTAACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	21	1	956.00	956	346	14	1	50	173	372
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTA.....................................................................................................................................................................................................................................................................................................................	23	1	596.00	596	10	24	188	51	51	272
.........................................................................................................................TGTTAACTGTAAGACTGTGT........................................................................................................................................................................................................................................................................................................................	20	1	572.00	572	10	3	2	126	80	351
........................................................................................................................ATGTTAACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	23	1	517.00	517	8	10	0	61	46	392
...........................................................................................................................TTAACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	20	1	131.00	131	32	1	1	3	28	66
...................................................................................ACATAGTCGTACGGTGAATGTT............................................................................................................................................................................................................................................................................................................................................................	22	1	97.00	97	7	11	1	40	12	26
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTTTT...................................................................................................................................................................................................................................................................................................................	25	1	54.00	54	5	0	0	25	13	11
..........................................................................................................................GTTAACTGTAAGACTGTGTCTT.....................................................................................................................................................................................................................................................................................................................	22	1	51.00	51	11	0	1	2	3	34
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTAA....................................................................................................................................................................................................................................................................................................................	24	1	44.00	44	2	4	29	1	2	6
............................................................................................................................TAACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	19	1	39.00	39	6	2	0	3	8	20
.........................................................................................................................TGTTAACTGTAAGACTGTGTCA......................................................................................................................................................................................................................................................................................................................	22	1	36.00	36	8	6	2	9	4	7
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTG.....................................................................................................................................................................................................................................................................................................................	23	1	32.00	32	2	0	0	8	4	18
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTC.....................................................................................................................................................................................................................................................................................................................	23	1	25.00	25	1	1	1	16	3	3
.........................................................................................................................TGTTAACTGTAAGACTGTGTCG......................................................................................................................................................................................................................................................................................................................	22	1	24.00	24	8	0	0	12	1	3
..........................................................................................................................GTTAACTGTAAGACTGTGTCTTT....................................................................................................................................................................................................................................................................................................................	23	1	22.00	22	1	0	0	0	2	19
.............................................................................................................................AACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	18	1	18.00	18	2	1	0	0	4	11
..........................................................................................................................GTTAACTGTAAGACTGTGTC.......................................................................................................................................................................................................................................................................................................................	20	1	14.00	14	1	0	1	1	6	5
.........................................................................................................................TGTTAACTGTAAGACTGT..........................................................................................................................................................................................................................................................................................................................	18	1	14.00	14	0	2	0	3	0	9
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTTC....................................................................................................................................................................................................................................................................................................................	24	1	12.00	12	0	1	0	1	5	5
.........................................................................................................................TGTTAACTGTAAGACTGTG.........................................................................................................................................................................................................................................................................................................................	19	1	12.00	12	1	0	0	5	3	3
...................................................................................ACATAGTCGTACGGTGAATGT.............................................................................................................................................................................................................................................................................................................................................................	21	1	11.00	11	1	3	0	1	1	5
...................................................................................ACATAGTCGTACGGTGAATGTTG...........................................................................................................................................................................................................................................................................................................................................................	23	1	11.00	11	2	0	0	4	1	4
.........................................................................................................................TGTTAACTGTAAGACTGTGTA.......................................................................................................................................................................................................................................................................................................................	21	1	9.00	9	0	0	0	0	3	6
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTAAA...................................................................................................................................................................................................................................................................................................................	25	1	9.00	9	0	1	7	0	1	0
..........................................................................................................................GTTAACTGTAAGACTGTGTCC......................................................................................................................................................................................................................................................................................................................	21	1	8.00	8	2	5	0	0	0	1
..........................................................................................................................GTTAACTGTAAGACTGTGT........................................................................................................................................................................................................................................................................................................................	19	1	7.00	7	0	0	0	1	4	2
.........................................................................................................................TGTTAACTGTAAGACTGTGTCCT.....................................................................................................................................................................................................................................................................................................................	23	1	7.00	7	0	0	0	3	1	3
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTTA....................................................................................................................................................................................................................................................................................................................	24	1	7.00	7	0	6	1	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTT.......................................................................................................................................................................................................................................................................................................................	21	1	7.00	7	1	0	0	3	1	2
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTCT....................................................................................................................................................................................................................................................................................................................	24	1	6.00	6	1	0	0	0	0	5
.........................................................................................................................TGTTAACTGTAAGACTGTGTTCT.....................................................................................................................................................................................................................................................................................................................	23	1	6.00	6	0	0	0	0	1	5
........................................................................................................................ATGTTAACTGTAAGACTGTGTC.......................................................................................................................................................................................................................................................................................................................	22	1	6.00	6	1	0	0	1	1	3
...........................................................................................................................TTAACTGTAAGACTGTGTCTT.....................................................................................................................................................................................................................................................................................................................	21	1	5.00	5	2	0	0	0	0	3
.........................................................................................................................TGTTAACTGTAAGACTGTTCT.......................................................................................................................................................................................................................................................................................................................	21	5	4.20	21	1	0	0	0	2	18
........................................................................................................TGTGTATTGGAAAGCAATGTTAACT....................................................................................................................................................................................................................................................................................................................................	25	1	4.00	4	0	1	0	1	1	1
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTAC....................................................................................................................................................................................................................................................................................................................	24	1	4.00	4	0	0	3	1	0	0

droBip1

GTTGCC-------------------------AAA------GGA--------CCTAA-AAAGGATG--CCGCTCAATTACCCCGACATAGTCGTACGGTGAATGTTGTGTATTGGAAAGCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCTAGCC----------TACCATCCCACTATCCTGCCAGC----CAG-------------------------------------------------CC---------------------AGCCCC--A-CCAA------------------------------AT-----A------------------------------ATCGCATCGAAA-------------------CCCA---ACCGGATA--C-------------------------------GAGCATGTGGAAG-TGA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GCCGCCGCTG----------------------TC------GCA--------GGAAT-AAAGGATG--CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCCAGCAACAT----------------------------------GAAGCAAGTGGAGATTGGAGAGTGAAAAGTGGAGAGTGGTGAGTGGA---A-G-AGT---------------------------------------------------------------------------------------------------------GGCAA-------------------CCCA---ACCGGATA--T-------------------------------GGGTATGTGGAAG-TGA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GAGAATGGAA--AAAGTA-----------------G-----AAAGG-AGAGAGGAG-AAAGGATG--CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCCATCAACAATGGCCCAGCAT-------------TAGCCAGCGAC----------------------------------------------------------------------------------TCAAC----------------CAT-----CGCATCCCATCGCA-----TCGTAT-----CC----------TATCGTATCGTAGCGAATCGAATCGAGTCGAGCACA---ACCGGATGTAT-------------------------------AGCTACGTGGAAG-TGA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GCCGAC--AACTACAACGACAAAACAACGACAAC------GAACGATA----GAAGAAAAGGATG--CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGCTTGCCAGCCAGCC----------CAGCAA-----------------------T-------------------------------------------------ACA----AT--------------------GTA-TCCAC-------ATCGA-----TT-----TGTATCGCAGCGCA-----TCGTAT-----CC----------TATAGCATCGAA--------------------CCCA---ACCGGATATAT-------------------------------GGGTATGTGGAAG-TGA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GCCGCC-------------------------GAT------GAA--------CGAAG-AAAGGATG--CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCCAGCAACAC--------------------------------------------------------------------------------------A----AT-----------------C--GTA-TCCAC---------------------------A-----TCGAA-----TCGTAT-----CC----------TATCGCATCGAA--------------------CCCA---ACCGGATATATGG---------------ATATATGGAGACATGGGTGTGTGGAAG-TGA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GA-------------------------------C------GAA--------CGAAG-AAAGGATG--CCGCTCAATTACCCCGACATAGTCGTACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCCAGCAACAG--------------------------------------------------------------------------------------A----AT-----------------------------------------------------CG--------------------CATCCTATCCCCAGGCCGCATATCGCATCGAA--------------------CCCA---ACCGGATGTATGG---------------GT------------AGGTGTGTGGAAG-TGA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

C---------------------------------------------------GAAG-AAAGGATG--CCGCTCAATTACCCCGACATAGTCGTACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCTCAGCAACAA--------------------------------------------------------------------------------------A-------------------------AGTA-CCAACT-----------------------CG--------------------TATCCTATCC----------TATCGCATCGAA--------------------CCCA---ACCGGATGTAT-------------------------------AAGTATGTGGAAG-TGA	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GCCC----------------------------AT------GAA--------CGAAG-AAAGGATG--CCGCTCAATTACCCTGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCCAGCAACAA--------------------------------------------------------------------------------------T--------------------AACAATGTA-TCAACT-----------------------CGAA-AT-----CA-----TCGTAT-----CC----------TA-----TCGAA--------------------CCCA---AACGGATATATATATACCCTCAGTATATAT------------AGATATGTGGAAG-TGA	Size	Hit Count	Total Norm	Total
No Reads

dm3

GCTGT---AGCC-------------------GAT------GAACGG-A----GAAG-AAAGGATG--CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCCAGCCACAC-----------------------------------------------------------------------------------------------------------AGCCCAGTA-TCAACTATACGGATCGCTTCCCTTCGCATCGCA-----TCGCATCGCTTTGAAT-----CC----------TATCGCATCGCAG--------------------CCAA-AACCGGATGTATAT------------------------------GGTATGTGGAAG-TGA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.........................................................................................................................TGTTAACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	22	1	1396801.00	1396801	0	0	0	0	284	11	7	23	7	19	8	35	4	9	61	5	3	71	256	0	61	120	52	642	0	129	701	110	266	700	16587	20606	77	83	2	379	476	377	456	271	96	799	1223	323	182	409	514	313	688	948	1454	461	199	178	1556	65	16	6	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	833	823	665	593	926	231	26	166	213	108	223	340	50	30	234	1441	25	390	2409	238	627	48	29	149	294	10535	89	155	301	483	534	114	205	63	320	115	123	74	267	500	13239	6495	118	4530	34	3436	3604	17481	256	8206	665	12226	8672	0	0	0	1	95	181	1	0	1	0	299	1023	1296	818	466	834	1565	1234	2179	1086	1798	952	1278	1388	476	63	55	185	19	18	2247	302	850	177	927	1072	26753	30625	0	22389	251	123	5290	23333	757	17852	300	8778	168	11085	303	70	460	660	673	8	18086	378	399	1116	795	38	12	12	276	47	1115	1883	167	144	23	78	227	334	950	0	3	37	10	0	5	1235	1352	990	1952	2359	764	1111	11728	4421	9479	15191	15109	8244	5095	16249	509	15	16	392	290	168	0	0	1782	1415	23	1053	7650	946	955	1385	681	5463	12491	380	3324	3912	1526	1554	1986	1926	18066	1810	632	584	1542	885	2013	1737	331	3873	1143	2396	1289	710	736	395	2586	14400	2957	15141	2645	16520	2052	14176	767	5746	2261	1747	3133	38008	47659	45519	47742	6090	20081	20842	12261	2394	3207	4101	8861	4473	6977	15587	3796	19642	20817	756	9660	978	15556	13018	4841	6139	7751	6336	4986	6897	11388	6175	4096	10077	1128	10635	221168	15803	7487	12746	9825	10661	9591	3870	22897	3531	8140	26
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTA.....................................................................................................................................................................................................................................................................................................................	23	1	32602.00	32602	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	1	0	0	7	9	2	11	0	5	7	0	0	0	0	0	0	0	0	38	15	97	44	18	4	58	49	24	6	54	9	29	90	39	38	21	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	1	0	1	9	0	0	0	10	1	1	0	0	0	2	0	4	4	0	3	0	0	1	0	8	0	1	0	1	0	1	0	3	1	3	0	0	4	1	13	45	0	18	0	16	15	93	1	13	3	13	15	0	0	0	0	3	12	0	0	0	0	119	303	207	295	141	121	84	240	71	94	29	106	60	81	33	0	0	0	0	0	0	0	0	2	0	0	25	29	0	16	2	0	18	28	2	21	0	55	1	51	0	0	2	0	13	0	84	11	106	32	117	3	2	0	5	11	46	211	0	0	0	0	0	88	355	0	0	3	0	0	0	9	16	7	67	32	18	18	46	17	45	43	77	44	32	108	2	0	0	0	590	350	0	0	10	9	0	33	54	7	7	12	4	54	123	7	47	31	5	9	15	7	205	15	4	5	8	4	8	4	5	16	8	20	6	5	6	3	569	3283	497	2530	516	3142	125	729	7	64	27	2	11	359	323	307	332	205	39	49	36	22	197	367	724	653	1063	156	24	110	136	6	68	56	1665	1967	53	88	37	71	9	45	178	28	49	72	6	223	1605	273	384	1058	302	756	62	25	161	39	103	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTC.......................................................................................................................................................................................................................................................................................................................	21	1	26690.00	26690	0	0	0	0	4	0	0	0	0	1	0	0	0	0	10	3	0	20	2	0	4	4	2	13	0	4	34	10	21	28	271	201	6	9	0	14	9	6	17	8	2	23	47	7	7	12	10	7	20	37	34	14	4	19	0	0	5	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28	42	18	27	1	1	0	0	0	2	1	2	0	0	3	7	0	4	36	0	1	0	0	0	0	76	0	1	1	4	3	2	0	0	1	0	0	0	1	33	190	779	1	70	1	170	515	2047	30	103	59	164	116	0	0	0	0	1	4	0	0	0	0	20	38	59	86	17	25	27	19	44	37	17	34	49	83	18	5	2	2	0	1	34	13	32	3	7	5	243	317	0	134	18	10	48	220	32	292	27	185	47	218	73	27	15	4	16	0	229	37	35	42	46	4	0	0	15	0	25	30	4	8	2	19	20	11	35	0	1	2	0	0	0	25	31	17	37	75	25	92	98	63	74	110	160	101	45	192	133	135	75	105	26	21	0	0	17	30	2	54	112	22	11	19	2	72	179	4	38	35	12	16	20	9	162	20	9	4	18	13	35	21	8	398	30	92	23	14	13	11	59	397	61	315	101	563	87	519	9	187	22	40	69	940	937	753	1046	145	96	215	115	44	72	159	343	100	117	245	71	251	256	25	135	32	315	364	88	101	83	46	69	115	158	56	33	99	17	141	2526	199	178	176	103	169	127	47	889	28	208	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTT.....................................................................................................................................................................................................................................................................................................................	23	1	24983.00	24983	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	4	0	0	6	11	5	3	0	4	23	0	0	0	0	0	0	0	0	12	23	10	15	11	2	18	45	14	13	16	23	14	45	40	73	10	14	0	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	5	5	0	1	0	0	0	0	0	1	0	0	0	1	0	0	1	0	0	0	0	0	0	5	0	0	0	1	0	0	0	1	0	1	0	0	0	0	12	20	0	9	0	21	28	151	2	29	4	42	26	0	0	0	0	0	3	0	0	0	0	42	76	62	44	22	27	30	49	47	32	67	41	51	72	29	0	1	0	0	0	1	0	6	7	0	0	85	105	0	63	3	0	56	72	7	65	1	91	3	184	12	0	2	0	22	0	168	23	26	42	10	0	0	0	14	3	45	34	0	0	0	0	1	25	27	0	0	0	0	0	0	19	24	12	93	77	34	61	81	21	91	118	86	42	18	84	17	0	0	28	594	323	0	0	23	28	0	53	173	41	60	76	26	127	259	30	87	195	14	19	33	38	309	87	12	39	35	21	45	82	12	415	44	184	32	32	27	8	93	521	151	796	119	744	83	429	8	401	72	23	50	652	589	569	682	29	50	77	37	71	58	207	387	212	329	268	90	234	302	47	338	61	342	313	207	181	123	99	54	118	341	73	61	202	15	162	1631	414	228	234	113	201	155	157	2406	196	951	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTATC...................................................................................................................................................................................................................................................................................................................	25	1	21859.00	21859	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14010	7849	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCC......................................................................................................................................................................................................................................................................................................................	22	1	21698.00	21698	0	0	0	0	2	0	0	0	0	0	0	0	1	0	0	0	0	0	2	0	4	5	13	6	0	0	9	0	0	0	0	0	0	0	0	18	15	16	18	20	1	25	40	11	6	15	13	12	24	76	72	20	17	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	30	40	22	32	6	1	0	2	0	1	6	3	1	0	1	7	0	1	4	5	5	0	0	1	0	19	0	1	1	5	4	0	3	2	1	2	0	0	1	0	28	14	0	8	0	8	9	42	0	14	4	22	18	0	0	0	0	0	4	0	0	0	0	12	41	63	34	23	62	50	86	75	89	23	35	70	76	29	11	2	8	3	1	18	8	56	48	20	4	66	66	0	52	2	2	32	37	1	37	0	46	1	48	3	0	4	26	5	0	149	12	101	13	79	0	0	0	16	1	14	58	1	1	0	1	0	40	95	0	0	0	0	0	0	25	20	22	55	86	25	30	305	118	303	283	358	185	139	259	41	6	5	53	6	4	0	0	10	6	0	22	30	12	13	24	9	14	38	3	11	14	6	8	14	2	35	24	6	5	14	31	22	27	9	139	47	69	6	18	12	6	216	1245	281	1499	249	1542	254	1634	10	55	26	31	43	193	173	126	205	237	75	49	51	45	50	446	930	389	584	116	174	67	143	23	366	309	820	718	52	65	58	25	53	91	122	21	32	59	8	51	385	135	330	265	69	200	169	29	228	23	24	0
..........................................................................................................................GTTAACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	21	1	19448.00	19448	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	1	5	0	3	0	21	50	4	6	13	188	290	1	2	0	9	11	6	11	2	4	9	11	5	4	6	10	4	10	15	13	10	4	2	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	26	35	25	31	2	0	2	0	0	1	3	10	0	0	1	1	0	0	12	0	1	0	0	0	0	38	1	6	4	6	6	4	3	2	1	0	0	1	0	4	136	63	2	36	0	43	34	171	2	106	15	130	128	0	0	0	0	0	3	0	0	0	0	11	23	9	20	11	14	26	22	28	16	22	25	7	28	3	1	0	2	2	1	69	0	28	19	22	19	454	472	0	296	6	4	76	339	15	207	8	146	5	221	0	0	11	15	29	2	320	3	10	7	8	3	0	0	2	0	6	18	0	7	1	7	0	5	14	0	0	0	0	0	0	176	192	73	14	14	9	16	29	19	60	104	58	30	21	70	6	0	4	4	2	1	0	0	4	3	1	7	25	65	42	75	18	18	31	26	10	261	13	19	61	37	52	153	11	15	58	42	43	63	11	46	58	92	53	33	26	22	123	899	126	838	97	658	67	469	172	89	76	36	144	140	222	169	222	90	93	105	74	107	27	76	291	102	402	87	123	88	119	29	161	29	499	371	119	243	298	220	109	170	398	191	132	314	29	89	749	87	68	118	99	101	569	170	145	96	134	5
........................................................................................................................ATGTTAACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	23	1	15148.00	15148	0	0	0	0	3	2	0	0	0	0	0	0	0	0	0	0	0	0	4	0	1	0	0	1	0	0	2	0	1	6	99	98	0	1	2	3	5	4	7	2	0	4	3	3	2	5	10	5	9	10	25	4	2	0	41	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	8	1	5	7	1	0	0	1	1	0	0	0	3	0	11	0	5	11	1	1	1	1	2	5	114	1	0	1	7	8	1	1	0	0	1	1	1	1	4	59	33	1	17	0	28	18	79	2	11	0	15	10	0	0	0	0	0	1	0	0	0	0	4	11	4	14	0	7	11	13	18	9	14	13	7	10	3	3	6	5	0	2	11	0	0	4	0	0	156	224	0	151	0	0	49	117	6	112	1	169	0	264	2	0	2	12	1	0	170	3	5	9	6	0	0	0	3	0	6	10	18	19	0	18	11	8	15	0	0	0	0	0	0	11	15	3	14	23	5	13	105	23	40	92	102	51	39	116	2	0	0	2	3	0	0	0	15	21	0	27	113	7	12	9	9	70	123	6	40	12	0	3	15	18	275	13	5	2	22	9	10	11	1	22	13	37	26	5	7	5	23	144	17	125	34	241	24	140	17	64	39	7	27	668	851	745	914	123	312	249	113	36	26	42	156	47	174	258	46	317	323	6	102	8	303	349	39	53	77	58	21	29	171	92	52	64	9	82	2340	107	49	114	80	123	51	17	74	45	99	27
.........................................................................................................................TGTTAACTGTAAGACTGTGT........................................................................................................................................................................................................................................................................................................................	20	1	10714.00	10714	0	0	0	0	1	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	2	1	9	0	5	14	19	23	28	68	80	5	2	291	2	2	1	1	2	1	7	5	2	3	4	2	2	3	10	3	4	0	1	0	0	6	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	10	12	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	1	1	0	0	0	0	11	0	0	0	0	0	0	0	0	0	0	0	0	0	10	91	224	5	7	0	56	139	709	7	40	15	67	42	0	0	0	0	0	0	0	0	0	0	4	7	17	18	5	5	6	4	5	8	16	8	11	18	4	1	0	5	0	0	7	7	6	1	1	0	76	145	0	63	47	25	20	102	33	85	28	85	30	88	48	0	3	0	72	0	90	12	5	30	12	7	0	0	4	1	23	26	0	2	0	0	0	2	4	0	0	4	2	0	0	13	19	10	10	17	10	38	10	15	6	9	9	13	6	39	22	12	2	28	0	0	0	0	5	3	0	4	70	4	7	6	0	20	163	4	22	8	4	2	5	3	53	9	1	2	5	4	6	8	10	185	9	25	14	6	9	3	18	94	10	57	15	131	11	81	4	78	9	17	31	373	281	344	564	52	10	58	33	11	48	16	30	20	29	136	31	138	141	4	31	5	66	67	38	37	19	11	37	15	38	8	9	31	8	110	2098	60	34	39	47	59	52	15	429	14	66	0
...................................................................................ACATAGTCATACGGTGAATGTT............................................................................................................................................................................................................................................................................................................................................................	22	1	4914.00	4914	0	0	0	0	8	0	0	1	1	2	1	0	1	1	0	1	0	0	2	0	2	0	0	2	0	2	0	0	1	4	54	77	0	0	1	3	3	4	1	1	0	9	12	1	2	0	7	5	1	8	27	1	0	0	0	0	8	8	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	6	6	13	9	53	1	29	15	5	17	19	12	5	20	42	1	6	51	8	4	1	2	17	35	262	3	21	26	45	58	4	13	0	3	12	8	4	8	0	26	14	0	15	0	6	4	13	0	2	1	5	12	0	0	2	0	0	0	0	0	0	0	2	1	2	0	0	6	20	18	42	26	22	6	10	11	5	0	0	0	0	0	70	5	73	46	20	15	116	118	0	127	0	0	7	92	4	57	1	74	4	101	4	9	35	28	0	0	7	6	5	6	6	0	0	0	1	0	6	4	0	0	0	0	0	2	0	0	0	3	0	0	0	79	41	18	24	36	4	1	14	2	35	24	15	8	13	31	62	0	0	59	0	0	0	0	26	16	0	4	5	10	11	9	7	5	4	1	0	10	3	11	8	8	2	13	11	6	10	43	19	17	4	16	42	91	29	15	7	6	2	19	2	8	2	8	3	10	24	13	19	21	32	6	35	30	52	27	72	24	13	49	4	16	88	14	51	21	39	20	22	0	14	5	94	111	16	20	23	23	14	22	111	39	25	39	7	3	73	5	4	8	4	12	95	11	3	10	3	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTAA....................................................................................................................................................................................................................................................................................................................	24	1	4350.00	4350	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	3	4	16	6	3	1	16	12	5	1	6	3	4	14	4	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	1	0	0	0	0	1	1	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	29	88	57	56	17	23	7	60	10	40	2	11	17	0	0	0	0	0	0	0	0	0	0	0	0	0	2	5	0	1	0	0	0	3	0	0	1	6	0	3	0	0	0	0	2	0	3	9	23	12	15	0	0	0	5	0	21	5	0	0	0	0	0	29	67	0	0	0	0	0	0	0	0	0	2	1	2	0	5	2	4	8	9	16	2	8	0	0	0	0	0	1	0	0	2	1	0	1	0	0	0	1	0	4	4	0	4	1	0	0	1	0	6	1	0	0	0	0	0	0	1	0	1	0	0	0	0	0	143	654	87	406	90	681	9	86	0	2	0	0	0	23	12	7	12	62	6	2	1	0	64	44	93	63	117	7	0	7	11	0	0	11	229	333	0	1	0	2	2	1	0	1	1	0	0	20	38	9	21	86	14	55	0	0	4	0	1	0
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...................................................................................ACATAGTCATACGGTGAATGT.............................................................................................................................................................................................................................................................................................................................................................	21	1	1035.00	1035	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	1	1	1	0	1	1	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	2	0	0	0	0	0	0	0	1	0	0	2	1	0	1	5	0	0	1	0	0	1	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	2	2	2	0	0	0	5	2	6	3	3	1	0	0	3	0	0	0	0	0	0	0	0	11	0	8	9	9	0	8	1	0	1	3	0	3	0	14	5	13	6	0	0	4	0	1	7	2	4	3	4	0	0	0	0	1	1	0	0	0	0	0	0	2	2	2	0	0	0	0	0	22	23	13	6	4	2	2	3	0	2	3	3	1	1	3	13	1	0	12	0	0	0	0	3	0	0	1	1	4	1	0	0	0	4	0	1	0	1	3	1	0	6	2	2	2	5	13	2	3	0	7	14	40	6	5	5	4	0	5	0	5	1	6	0	5	5	3	4	2	11	17	4	9	23	20	12	3	2	15	0	6	21	11	22	5	7	8	5	1	8	5	14	21	7	12	4	28	6	4	78	12	14	10	1	3	67	3	1	0	0	3	38	2	3	8	3	0
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........................................................................................................................ATGTTAACTGTAAGACTGTGTC.......................................................................................................................................................................................................................................................................................................................	22	1	483.00	483	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	4	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	10	0	1	0	2	3	19	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	6	0	3	0	0	3	2	1	4	0	2	1	5	0	0	0	0	1	0	7	1	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	10	2	1	2	1	0	0	1	2	2	0	2	2	4	4	0	0	5	0	0	0	0	1	0	0	0	3	0	0	0	1	2	1	0	2	0	0	0	0	0	1	1	0	0	0	0	1	0	0	0	1	6	0	1	0	1	0	5	0	4	0	12	0	4	0	6	4	0	1	27	24	25	34	2	1	2	0	3	1	0	6	0	1	8	0	2	8	1	13	1	7	9	1	2	3	2	0	0	11	3	0	2	0	3	57	2	3	4	2	4	1	0	1	0	4	0
............................................................................................................................TAACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	19	1	300.00	300	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	2	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	4	0	0	0	0	0	1	1	0	10	0	9	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	1	0	0	0	0	0	0	0	0	0	2	0	0	0	15	5	7	16	0	3	0	0	1	17	1	22	0	2	0	0	0	0	6	0	1	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	1	0	1	1	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	1	0	0	1	2	0	0	0	1	0	0	1	0	0	0	0	0	2	0	0	0	1	0	0	0	7	2	1	0	1	1	2	0	8	1	0	1	0	5	8	9	1	3	3	1	1	0	4	1	1	1	1	1	5	4	0	2	0	3	1	2	1	4	1	0	2	0	0	0	2	1	2	34	2	0	1	1	0	2	0	1	0	2	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTAC....................................................................................................................................................................................................................................................................................................................	24	1	299.00	299	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	1	0	1	0	0	0	0	0	168	98	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	1	0	0	0	1	0	0	0	0	0	0	1	0	2	1	0	0	0	1	0	2	0	2	2	0	0	0	1	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0
..........................................................................................................................GTTAACTGTAAGACTGTGTC.......................................................................................................................................................................................................................................................................................................................	20	1	279.00	279	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	2	0	0	1	0	3	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	10	0	0	0	0	13	19	0	2	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	2	0	0	0	0	0	0	0	2	0	0	0	0	0	3	3	0	1	0	0	1	4	1	1	0	3	0	1	0	0	0	0	1	0	3	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	1	1	0	2	0	1	2	1	1	0	1	5	2	1	0	0	0	0	0	0	0	1	0	2	1	3	0	0	0	1	1	0	0	0	3	0	0	1	0	0	0	2	1	0	0	0	2	2	2	0	1	1	0	6	0	9	2	7	0	0	2	3	1	0	2	1	2	1	3	3	0	0	0	1	0	1	1	0	2	0	5	2	0	3	0	0	9	2	1	3	5	7	1	4	13	2	4	3	0	0	5	1	2	4	1	0	7	1	0	0	3	0
.............................................................................................................................AACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	18	1	261.00	261	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	2	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	13	2	10	0	8	0	0	2	10	1	9	0	5	0	1	0	0	0	0	5	1	13	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	1	1	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	2	0	0	0	0	3	14	2	6	0	4	0	5	0	16	0	1	2	3	10	4	14	2	8	2	1	0	1	0	1	0	1	2	1	1	2	0	8	0	0	1	0	1	0	1	0	0	2	0	1	0	0	2	22	1	1	0	0	0	0	0	0	0	1	0
..........................................................................................................................GTTAACTGTAAGACTGTGTCTT.....................................................................................................................................................................................................................................................................................................................	22	1	241.00	241	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	1	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	5	3	0	3	0	0	0	1	2	3	0	1	0	5	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	3	0	2	1	0	0	0	1	0	0	0	0	0	0	0	0	3	2	0	0	0	0	0	0	2	0	2	0	0	2	0	1	1	3	0	0	2	1	3	6	0	0	1	2	0	1	0	0	0	1	1	1	0	1	3	4	1	7	0	4	0	4	2	52	0	1	0	5	3	3	4	0	0	0	0	1	0	1	4	0	1	1	1	1	1	4	2	0	4	1	1	1	2	4	2	1	5	1	0	1	0	0	4	1	0	0	1	0	3	2	9	3	3	0
..........................................................................................................................GTTAACTGTAAGACTGTGTCC......................................................................................................................................................................................................................................................................................................................	21	1	238.00	238	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	3	0	0	0	3	0	0	0	0	1	0	0	0	5	2	0	0	0	1	0	0	0	0	2	0	0	0	0	1	1	3	0	0	0	0	0	0	4	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	2	1	0	0	0	3	0	1	2	2	0	0	3	0	0	0	2	0	0	0	0	0	0	0	0	0	1	1	2	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	1	1	0	0	0	1	0	1	1	0	5	28	5	26	3	8	2	13	1	0	0	0	1	0	1	1	0	5	0	0	1	0	0	0	14	2	6	2	3	0	0	0	2	5	2	8	1	3	0	0	2	2	3	0	2	0	0	1	1	0	0	0	0	0	2	1	0	2	1	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCAA.....................................................................................................................................................................................................................................................................................................................	23	1	178.00	178	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	5	0	0	0	1	0	3	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	3	0	0	0	0	0	0	0	1	3	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	2	0	0	2	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	3	26	2	21	3	29	0	9	0	0	0	0	0	1	0	1	2	1	0	0	0	0	3	1	2	4	1	0	0	1	0	0	0	1	1	11	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	4	1	2	0	0	0	0	0	0
..........................................................................................................................GTTAACTGTAAGACTGTGTCTA.....................................................................................................................................................................................................................................................................................................................	22	1	166.00	166	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	1	1	1	2	0	0	2	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	1	0	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	26	4	17	0	7	0	7	1	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	10	1	6	0	0	0	1	1	0	1	11	4	0	2	0	2	0	0	7	0	0	0	0	0	5	0	2	3	0	1	0	0	1	1	3	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCCT.....................................................................................................................................................................................................................................................................................................................	23	1	155.00	155	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	3	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	1	1	0	0	0	1	1	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	1	2	0	0	0	0	0	0	0	0	0	0	1	0	0	4	0	2	0	0	0	0	1	6	1	20	1	3	1	5	0	1	0	1	1	4	1	1	0	5	0	0	1	0	0	4	3	3	4	1	1	1	2	0	2	3	1	2	1	2	0	0	0	0	1	0	0	1	0	1	12	4	3	1	2	2	1	0	8	0	1	0

droSim2

GTAGCC-------------------------GAT------GAACGG-A----GAAG-AAAGGATG--CCGCTCAATTACCCCGACATAGTCGTACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCCAGCCACAC-----------------------------------------------------------------------------------------------------------AGCCCAGTA-TCAACTATACGGATCGCTTCCCTTCGCATCGCA-----TCGCATCGCTTTGAAT-----CC----------TATCGCATCGCAG--------------------CCAAAAACCGGATGTATAT------------------------------GGTATGTGGAAG-TGA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.........................................................................................................................TGTTAACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	22	1	710080.00	710080	510817	19930	30119	3472	3	34	55586	47946	21544	17150	1112	1276	186	885	5	1	14
.........................................................................................................................TGTTAACTGTAAGACTGTGTCC......................................................................................................................................................................................................................................................................................................................	22	1	69628.00	69628	63787	1912	3290	18	0	0	179	86	144	120	83	3	3	3	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTC.......................................................................................................................................................................................................................................................................................................................	21	1	21010.00	21010	9156	361	398	23	19	175	4062	3307	1802	1517	77	9	24	80	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCG......................................................................................................................................................................................................................................................................................................................	22	1	12616.00	12616	10906	665	1035	1	0	0	2	2	1	1	2	1	0	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTA.....................................................................................................................................................................................................................................................................................................................	23	1	8424.00	8424	294	43	57	37	0	0	2642	1986	1860	1216	239	43	5	2	0	0	0
...........................................................................................................................TTAACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	20	1	4602.00	4602	4126	80	283	18	0	0	35	37	10	10	2	0	0	1	0	0	0
........................................................................................................................ATGTTAACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	23	1	3656.00	3656	2957	122	253	2	0	0	101	111	56	29	10	15	0	0	0	0	0
..........................................................................................................................GTTAACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	21	1	1965.00	1965	538	75	80	331	0	0	329	336	142	103	15	8	1	0	1	0	6
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTAA....................................................................................................................................................................................................................................................................................................................	24	1	1930.00	1930	2	0	5	8	0	0	440	302	713	406	34	15	5	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGT........................................................................................................................................................................................................................................................................................................................	20	1	1792.00	1792	331	9	0	5	1	27	478	402	268	235	25	2	0	9	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTT.....................................................................................................................................................................................................................................................................................................................	23	1	1632.00	1632	531	55	14	21	0	0	441	278	114	80	72	21	0	5	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTAAA...................................................................................................................................................................................................................................................................................................................	25	1	1012.00	1012	0	0	0	9	0	0	187	135	430	232	13	2	3	1	0	0	0
...........................................................................................................................TTAACTGTAAGACTGTGTCC......................................................................................................................................................................................................................................................................................................................	20	1	554.00	554	503	14	37	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCA......................................................................................................................................................................................................................................................................................................................	22	1	488.00	488	83	6	11	5	0	0	50	46	142	126	14	2	1	2	0	0	0
........................................................................................................................ATGTTAACTGTAAGACTGTGTCC......................................................................................................................................................................................................................................................................................................................	23	1	383.00	383	354	5	24	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTCG....................................................................................................................................................................................................................................................................................................................	24	1	371.00	371	0	0	0	0	20	351	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................TAACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	19	1	336.00	336	290	3	14	1	0	0	3	3	8	8	6	0	0	0	0	0	0
...................................................................................ACATAGTCGTACGGTGAATGTT............................................................................................................................................................................................................................................................................................................................................................	22	1	289.00	289	94	6	28	1	12	49	2	5	2	0	17	5	15	41	2	4	6
.............................................................................................................................AACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	18	1	288.00	288	231	6	5	0	0	0	6	5	8	1	26	0	0	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTG.........................................................................................................................................................................................................................................................................................................................	19	1	286.00	286	30	3	0	1	4	128	42	32	25	12	6	0	1	2	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGT..........................................................................................................................................................................................................................................................................................................................	18	1	282.00	282	81	8	4	0	9	172	0	2	0	4	2	0	0	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTC.....................................................................................................................................................................................................................................................................................................................	23	1	133.00	133	28	1	6	3	0	9	22	25	18	20	0	1	0	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTCC........................................................................................................................................................................................................................................................................................................................	20	1	123.00	123	115	0	7	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..........................................................................................................................GTTAACTGTAAGACTGTGTCC......................................................................................................................................................................................................................................................................................................................	21	1	107.00	107	83	11	8	1	0	0	1	1	1	0	1	0	0	0	0	0	0
...........................................................................................................................TTAACTGTAAGACTGTGTCG......................................................................................................................................................................................................................................................................................................................	20	1	93.00	93	85	4	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................ATGTTAACTGTAAGACTGTGTC.......................................................................................................................................................................................................................................................................................................................	22	1	92.00	92	62	0	4	0	1	3	10	8	1	2	1	0	0	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACT............................................................................................................................................................................................................................................................................................................................	16	1	91.00	91	0	0	0	0	0	0	11	8	5	18	49	0	0	0	0	0	0
........................................................................................................................ATGTTAACTGTAAGACTGTGTCG......................................................................................................................................................................................................................................................................................................................	23	1	72.00	72	59	3	9	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCCA.....................................................................................................................................................................................................................................................................................................................	23	1	56.00	56	0	2	2	2	0	0	8	3	19	17	2	1	0	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCAA.....................................................................................................................................................................................................................................................................................................................	23	1	55.00	55	0	0	0	0	0	0	3	2	29	19	1	1	0	0	0	0	0
..........................................................................................................................GTTAACTGTAAGACTGTGTC.......................................................................................................................................................................................................................................................................................................................	20	1	54.00	54	13	2	0	1	0	2	13	11	3	7	2	0	0	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGG........................................................................................................................................................................................................................................................................................................................	20	1	53.00	53	49	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................TTAACTGTAAGACTGTGTC.......................................................................................................................................................................................................................................................................................................................	19	1	48.00	48	38	2	1	0	0	0	4	1	0	2	0	0	0	0	0	0	0
..............................................................................................................................ACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	17	1	45.00	45	0	0	0	0	0	0	3	12	3	0	27	0	0	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGC........................................................................................................................................................................................................................................................................................................................	20	1	40.00	40	36	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................TAACTGTAAGACTGTGTCC......................................................................................................................................................................................................................................................................................................................	19	1	39.00	39	38	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................AACTGTAAGACTGTGTCC......................................................................................................................................................................................................................................................................................................................	18	1	34.00	34	29	2	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTG.....................................................................................................................................................................................................................................................................................................................	23	1	26.00	26	5	0	0	1	0	0	4	2	8	5	1	0	0	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTTT....................................................................................................................................................................................................................................................................................................................	24	1	24.00	24	5	3	0	1	0	0	12	2	1	0	0	0	0	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTCG........................................................................................................................................................................................................................................................................................................................	20	1	23.00	23	18	2	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................ACATAGTCGTACGGTGAATG..............................................................................................................................................................................................................................................................................................................................................................	20	1	22.00	22	6	0	0	0	2	14	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................ATGTTAACTGTAAGACTGTGT........................................................................................................................................................................................................................................................................................................................	21	1	21.00	21	6	0	2	0	0	0	2	5	2	4	0	0	0	0	0	0	0
..........................................................................................................................GTTAACTGTAAGACTGTGTCTT.....................................................................................................................................................................................................................................................................................................................	22	1	20.00	20	5	1	0	1	0	0	0	1	0	1	11	0	0	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTAC......................................................................................................................................................................................................................................................................................................................	22	1	19.00	19	16	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTT.......................................................................................................................................................................................................................................................................................................................	21	1	19.00	19	10	0	0	0	0	0	5	1	1	1	1	0	0	0	0	0	0
...................................................................................ACATAGTCGTACGGTGAATGTTG...........................................................................................................................................................................................................................................................................................................................................................	23	1	18.00	18	0	0	0	0	1	3	2	5	2	1	2	2	0	0	0	0	0
..........................................................................................................................GTTAACTGTAAGACTGTGTCG......................................................................................................................................................................................................................................................................................................................	21	1	18.00	18	12	1	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCAAA....................................................................................................................................................................................................................................................................................................................	24	1	16.00	16	0	0	0	0	0	0	4	1	9	2	0	0	0	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCCT.....................................................................................................................................................................................................................................................................................................................	23	1	16.00	16	3	8	0	0	0	0	2	1	2	0	0	0	0	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTGG......................................................................................................................................................................................................................................................................................................................	22	1	15.00	15	13	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGG..........................................................................................................................................................................................................................................................................................................................	18	1	15.00	15	13	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................ACATAGTCGTACGGTGAATGT.............................................................................................................................................................................................................................................................................................................................................................	21	1	15.00	15	5	0	2	0	1	5	1	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGC..........................................................................................................................................................................................................................................................................................................................	18	1	14.00	14	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTAT....................................................................................................................................................................................................................................................................................................................	24	1	14.00	14	1	0	1	0	0	0	1	1	3	7	0	0	0	0	0	0	0
...............................................................................................................................CTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	16	1	13.00	13	0	0	0	0	0	0	1	7	2	1	2	0	0	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTAC....................................................................................................................................................................................................................................................................................................................	24	1	13.00	13	5	0	1	0	0	0	2	1	2	1	1	0	0	0	0	0	0
...................................................................................ACATAGTCGTACGGTGAAT...............................................................................................................................................................................................................................................................................................................................................................	19	1	12.00	12	3	0	0	0	1	6	0	1	0	0	0	0	0	0	1	0	0
................................................................................................................................TGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	15	1	11.00	11	0	0	0	0	0	0	0	0	0	2	9	0	0	0	0	0	0
.............................................................................................................................AACTGTAAGACTGTGTCTA.....................................................................................................................................................................................................................................................................................................................	19	1	10.00	10	0	0	0	0	0	0	0	0	0	0	10	0	0	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTTAA...................................................................................................................................................................................................................................................................................................................	25	1	10.00	10	0	0	0	0	0	0	2	1	6	1	0	0	0	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTTCT.......................................................................................................................................................................................................................................................................................................................	21	2	9.50	19	3	0	0	0	0	0	2	4	6	2	1	0	1	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTTC......................................................................................................................................................................................................................................................................................................................	22	1	9.00	9	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTGC......................................................................................................................................................................................................................................................................................................................	22	1	9.00	9	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................TAACTGTAAGACTGTGTCG......................................................................................................................................................................................................................................................................................................................	19	1	9.00	9	7	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................ACATAGTCGTACGGTGAA................................................................................................................................................................................................................................................................................................................................................................	18	1	9.00	9	5	0	0	0	0	3	0	0	0	0	1	0	0	0	0	0	0

droSec2

GCCACTGTAGTC-------------------GAT------GAACGG-A----GAAG-AAAGGATG--CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCCAGCCACAC-----------------------------------------------------------------------------------------------------------AGCCCAGTA-TCAACTATACGGATCGCTTCCCTT-----CGCATCGCATCG-----CTTTGAAT-----CC----------TATCGCATCGCAG--------------------CCAAAAACCGGATGTATAT------------------------------GGTATGTGGAAG-TGA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.........................................................................................................................TGTTAACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	22	1	105273.00	105273	13002	12625	9147	70499
..........................................................................................................................GTTAACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	21	1	1750.00	1750	1230	176	51	293
.........................................................................................................................TGTTAACTGTAAGACTGTGTC.......................................................................................................................................................................................................................................................................................................................	21	1	1578.00	1578	123	183	86	1186
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTT.....................................................................................................................................................................................................................................................................................................................	23	1	1478.00	1478	81	259	103	1035
........................................................................................................................ATGTTAACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	23	1	1328.00	1328	57	164	115	992
.........................................................................................................................TGTTAACTGTAAGACTGTGT........................................................................................................................................................................................................................................................................................................................	20	1	1006.00	1006	23	117	26	840
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTA.....................................................................................................................................................................................................................................................................................................................	23	1	687.00	687	26	170	42	449
.........................................................................................................................TGTTAACTGTAAGACTGTGTCC......................................................................................................................................................................................................................................................................................................................	22	1	412.00	412	67	82	36	227
...........................................................................................................................TTAACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	20	1	180.00	180	90	13	11	66
.........................................................................................................................TGTTAACTGTAAGACTGTGTCA......................................................................................................................................................................................................................................................................................................................	22	1	104.00	104	11	12	2	79
...................................................................................ACATAGTCATACGGTGAATGTT............................................................................................................................................................................................................................................................................................................................................................	22	1	66.00	66	8	1	40	17
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTTT....................................................................................................................................................................................................................................................................................................................	24	1	58.00	58	5	17	3	33
........................................................................................................................ATGTTAACTGTAAGACTGTGT........................................................................................................................................................................................................................................................................................................................	21	1	40.00	40	0	5	1	34
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTAA....................................................................................................................................................................................................................................................................................................................	24	1	38.00	38	0	10	11	17
...................................................................................ACATAGTCATACGGTGAATGTTG...........................................................................................................................................................................................................................................................................................................................................................	23	1	34.00	34	3	3	11	17
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTC.....................................................................................................................................................................................................................................................................................................................	23	1	31.00	31	7	6	5	13
........................................................................................................................ATGTTAACTGTAAGACTGTGTC.......................................................................................................................................................................................................................................................................................................................	22	1	30.00	30	1	6	1	22
...................................................................................ACATAGTCATACGGTGAATGT.............................................................................................................................................................................................................................................................................................................................................................	21	1	27.00	27	0	5	2	20
.........................................................................................................................TGTTAACTGTAAGACTGTG.........................................................................................................................................................................................................................................................................................................................	19	1	25.00	25	4	1	0	20
..........................................................................................................................GTTAACTGTAAGACTGTGTC.......................................................................................................................................................................................................................................................................................................................	20	1	24.00	24	16	4	2	2
............................................................................................................................TAACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	19	1	23.00	23	14	2	1	6
.............................................................................................................................AACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	18	1	16.00	16	3	2	4	7
.........................................................................................................................TGTTAACTGTAAGACTGTGTCG......................................................................................................................................................................................................................................................................................................................	22	1	14.00	14	4	0	0	10
..........................................................................................................................GTTAACTGTAAGACTGTGTCC......................................................................................................................................................................................................................................................................................................................	21	1	12.00	12	8	4	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTG.....................................................................................................................................................................................................................................................................................................................	23	1	8.00	8	2	1	0	5
..........................................................................................................................GTTAACTGTAAGACTGTGTCTA.....................................................................................................................................................................................................................................................................................................................	22	1	8.00	8	4	1	1	2
..........................................................................................................................GTTAACTGTAAGACTGTGTCTT.....................................................................................................................................................................................................................................................................................................................	22	1	7.00	7	2	1	0	4
..........................................................................................................................GTTAACTGTAAGACTGTGTCG......................................................................................................................................................................................................................................................................................................................	21	1	7.00	7	7	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCCA.....................................................................................................................................................................................................................................................................................................................	23	1	6.00	6	1	3	1	1
.........................................................................................................................TGTTAACTGTAAGACTGTGTT.......................................................................................................................................................................................................................................................................................................................	21	1	6.00	6	1	0	0	5
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTCT....................................................................................................................................................................................................................................................................................................................	24	1	6.00	6	0	1	0	5
..........................................................................................................................GTTAACTGTAAGACTGTGT........................................................................................................................................................................................................................................................................................................................	19	1	5.00	5	3	1	0	1
...........................................................................................................................TTAACTGTAAGACTGTGTC.......................................................................................................................................................................................................................................................................................................................	19	1	5.00	5	3	0	0	2
.........................................................................................................................TGTTAACTGTAAGACTGT..........................................................................................................................................................................................................................................................................................................................	18	1	5.00	5	1	0	0	4
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTAAA...................................................................................................................................................................................................................................................................................................................	25	1	4.00	4	0	0	3	1
.........................................................................................................................TGTTAACTGTAAGACTGTC.........................................................................................................................................................................................................................................................................................................................	19	1	4.00	4	0	0	1	3
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTCA....................................................................................................................................................................................................................................................................................................................	24	1	3.00	3	0	0	1	2
.........................................................................................................................TGTTAACTGTAAGACTGTGTTCT.....................................................................................................................................................................................................................................................................................................................	23	2	3.00	6	4	0	0	2
.........................................................................................................................TGTTAACTGTAAGACTGTGA........................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	0	0	3
........................................................................................................................ATGTTAACTGTAAGACTGTGTCA......................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	2
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTAT....................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	2	0	0
........................................................................................................................ATGTTAACTGTAAGACTGTGTCTA.....................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	1	1	0
.........................................................................................................................TGTTAACTGTAAGACTGTCC........................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	1	0	0	1
..............................................................ATG--CCGCTCAATTACCCCG..................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	2
.........................................................................................................................TGTTAACTGTAAGACTGTGTCAA.....................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	1	0	1

droYak3

GAAATC-------------------------G---------------A----GAAG-AAAGGATG--CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.........................................................................................................................TGTTAACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	22	1	181089.00	181089	101093	7958	31757	1600	9424	21832	7398	0	21	6	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCC......................................................................................................................................................................................................................................................................................................................	22	1	24376.00	24376	14420	28	9857	5	15	35	16	0	0	0	0
........................................................................................................................ATGTTAACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	23	1	2821.00	2821	2076	39	185	15	113	323	70	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTC.......................................................................................................................................................................................................................................................................................................................	21	1	2746.00	2746	1554	44	625	4	110	328	80	0	1	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCG......................................................................................................................................................................................................................................................................................................................	22	1	2439.00	2439	2391	27	5	1	4	9	2	0	0	0	0
..........................................................................................................................GTTAACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	21	1	1160.00	1160	205	779	48	9	12	61	46	0	0	0	0
...........................................................................................................................TTAACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	20	1	1011.00	1011	939	38	14	2	2	4	12	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTT.....................................................................................................................................................................................................................................................................................................................	23	1	793.00	793	186	57	37	36	93	276	108	0	0	0	0
........................................................................................................................ATGTTAACTGTAAGACTGTGTCC......................................................................................................................................................................................................................................................................................................................	23	1	362.00	362	296	0	66	0	0	0	0	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGT........................................................................................................................................................................................................................................................................................................................	20	1	287.00	287	28	3	1	2	64	162	27	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTA.....................................................................................................................................................................................................................................................................................................................	23	1	252.00	252	77	24	5	24	32	59	31	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTC.....................................................................................................................................................................................................................................................................................................................	23	1	158.00	158	35	5	69	9	13	24	3	0	0	0	0
...........................................................................................................................TTAACTGTAAGACTGTGTCC......................................................................................................................................................................................................................................................................................................................	20	1	144.00	144	140	0	4	0	0	0	0	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCA......................................................................................................................................................................................................................................................................................................................	22	1	111.00	111	22	23	26	1	7	27	5	0	0	0	0
............................................................................................................................TAACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	19	1	80.00	80	57	10	10	0	0	2	1	0	0	0	0
........................................................................................................................ATGTTAACTGTAAGACTGTGTC.......................................................................................................................................................................................................................................................................................................................	22	1	53.00	53	41	1	2	0	2	6	1	0	0	0	0
...................................................................................ACATAGTCATACGGTGAATGTT............................................................................................................................................................................................................................................................................................................................................................	22	1	53.00	53	0	2	22	2	6	14	4	0	1	2	0
.........................................................................................................................TGTTAACTGTAAGACTGTCC........................................................................................................................................................................................................................................................................................................................	20	1	52.00	52	34	0	18	0	0	0	0	0	0	0	0
........................................................................................................................ATGTTAACTGTAAGACTGTGTCG......................................................................................................................................................................................................................................................................................................................	23	1	49.00	49	47	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................AACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	18	1	45.00	45	35	2	2	0	4	2	0	0	0	0	0
..........................................................................................................................GTTAACTGTAAGACTGTGTCC......................................................................................................................................................................................................................................................................................................................	21	1	37.00	37	23	3	11	0	0	0	0	0	0	0	0
...........................................................................................................................TTAACTGTAAGACTGTGTCG......................................................................................................................................................................................................................................................................................................................	20	1	30.00	30	30	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTTT....................................................................................................................................................................................................................................................................................................................	24	1	25.00	25	1	2	2	2	3	8	7	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTAA....................................................................................................................................................................................................................................................................................................................	24	1	21.00	21	0	2	2	9	2	4	2	0	0	0	0
..........................................................................................................................GTTAACTGTAAGACTGTGTCTC.....................................................................................................................................................................................................................................................................................................................	22	1	21.00	21	11	2	6	1	0	1	0	0	0	0	0
...................................................................................ACATAGTCATACGGTGAATGTTG...........................................................................................................................................................................................................................................................................................................................................................	23	1	19.00	19	0	3	1	2	3	5	5	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTG.....................................................................................................................................................................................................................................................................................................................	23	1	18.00	18	1	3	0	0	6	8	0	0	0	0	0
........................................................................................................................ATGTTAACTGTAAGACTGTGT........................................................................................................................................................................................................................................................................................................................	21	1	16.00	16	0	0	0	0	4	10	2	0	0	0	0
..........................................................................................................................GTTAACTGTAAGACTGTGTCTT.....................................................................................................................................................................................................................................................................................................................	22	1	16.00	16	3	6	0	2	1	1	3	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTG.........................................................................................................................................................................................................................................................................................................................	19	1	12.00	12	2	1	0	0	1	8	0	0	0	0	0
...................................................................................ACATAGTCATACGGTGAATGT.............................................................................................................................................................................................................................................................................................................................................................	21	1	11.00	11	1	0	0	1	3	6	0	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGT..........................................................................................................................................................................................................................................................................................................................	18	1	11.00	11	6	0	0	0	3	2	0	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTCT....................................................................................................................................................................................................................................................................................................................	24	1	10.00	10	5	0	1	0	2	2	0	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGG........................................................................................................................................................................................................................................................................................................................	20	1	8.00	8	8	0	0	0	0	0	0	0	0	0	0

droEre2

GCCGCC-------------------------GAT------GAACGA-A----GAAG-AAAGGATG--CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCCAGCCACAC--------------------------------------------------------------------------------------CAGCC--ACACCAGCCACAGCAGCCCAGTA-TCAACA----------------CT-----CGGATCGCAACG-----CAGTGAAT-----CC----------TATCGCTTCGCAG-------------------CCAA---ACCGGATGTGTGC------------------------------GGTATGTGGAAG-TGA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.........................................................................................................................TGTTAACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	22	1	129674.00	129674	14944	2212	14806	2745	8970	85997	0
..........................................................................................................................GTTAACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	21	1	2451.00	2451	1500	7	65	9	224	646	0
........................................................................................................................ATGTTAACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	23	1	2271.00	2271	47	17	125	21	284	1777	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTC.......................................................................................................................................................................................................................................................................................................................	21	1	1814.00	1814	89	58	213	18	143	1293	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTT.....................................................................................................................................................................................................................................................................................................................	23	1	1169.00	1169	83	3	79	14	110	880	0
.........................................................................................................................TGTTAACTGTAAGACTGTGT........................................................................................................................................................................................................................................................................................................................	20	1	940.00	940	11	0	77	3	56	793	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCC......................................................................................................................................................................................................................................................................................................................	22	1	824.00	824	63	552	25	4	54	126	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTA.....................................................................................................................................................................................................................................................................................................................	23	1	504.00	504	61	1	28	10	61	343	0
...........................................................................................................................TTAACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	20	1	230.00	230	98	1	1	0	21	109	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCA......................................................................................................................................................................................................................................................................................................................	22	1	135.00	135	30	1	12	1	27	64	0
...................................................................................ACATAGTCATACGGTGAATGTT............................................................................................................................................................................................................................................................................................................................................................	22	1	95.00	95	13	2	23	0	13	44	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTC.....................................................................................................................................................................................................................................................................................................................	23	1	90.00	90	9	6	17	0	3	55	0
.............................................................................................................................AACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	18	1	66.00	66	4	0	3	3	0	56	0
...................................................................................ACATAGTCATACGGTGAATGTTG...........................................................................................................................................................................................................................................................................................................................................................	23	1	55.00	55	5	0	6	0	8	36	0
........................................................................................................................ATGTTAACTGTAAGACTGTGT........................................................................................................................................................................................................................................................................................................................	21	1	53.00	53	1	0	1	1	13	37	0
............................................................................................................................TAACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	19	1	51.00	51	15	1	0	1	2	32	0
........................................................................................................................ATGTTAACTGTAAGACTGTGTC.......................................................................................................................................................................................................................................................................................................................	22	1	51.00	51	0	1	8	0	7	35	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTTT....................................................................................................................................................................................................................................................................................................................	24	1	43.00	43	3	0	2	0	11	27	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTG.....................................................................................................................................................................................................................................................................................................................	23	1	42.00	42	1	0	4	0	1	36	0
...................................................................................ACATAGTCATACGGTGAATGT.............................................................................................................................................................................................................................................................................................................................................................	21	1	31.00	31	2	1	2	0	3	23	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTAA....................................................................................................................................................................................................................................................................................................................	24	1	28.00	28	11	0	0	4	3	10	0
.........................................................................................................................TGTTAACTGTAAGACTGTG.........................................................................................................................................................................................................................................................................................................................	19	1	27.00	27	2	1	3	0	0	21	0
..........................................................................................................................GTTAACTGTAAGACTGTGTCTT.....................................................................................................................................................................................................................................................................................................................	22	1	23.00	23	8	0	2	1	1	11	0
........................................................................................................................ATGTTAACTGTAAGACTGTGTCC......................................................................................................................................................................................................................................................................................................................	23	1	23.00	23	0	3	0	0	0	20	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCG......................................................................................................................................................................................................................................................................................................................	22	1	20.00	20	3	0	5	2	0	10	0
..........................................................................................................................GTTAACTGTAAGACTGTGTC.......................................................................................................................................................................................................................................................................................................................	20	1	20.00	20	10	1	1	0	1	7	0
.........................................................................................................................TGTTAACTGTAAGACTGTTCT.......................................................................................................................................................................................................................................................................................................................	21	2	13.50	27	3	0	0	0	1	23	0
..............................................................ATG--CCGCTCAATTACCCCG..................................................................................................................................................................................................................................................................................................................................................................................	19	1	12.00	12	2	0	0	0	0	10	0
..........................................................................................................................GTTAACTGTAAGACTGTGTCTC.....................................................................................................................................................................................................................................................................................................................	22	1	11.00	11	4	0	1	0	2	4	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTA.......................................................................................................................................................................................................................................................................................................................	21	1	11.00	11	0	0	1	0	0	10	0
........................................................................................................................ATGTTAACTGTAAGACTGTGTCA......................................................................................................................................................................................................................................................................................................................	23	1	11.00	11	0	0	0	0	0	11	0
..........................................................................................................................GTTAACTGTAAGACTGTGTCC......................................................................................................................................................................................................................................................................................................................	21	1	9.00	9	4	4	0	0	1	0	0
........................................................................................................................ATGTTAACTGTAAGACTGTGTCG......................................................................................................................................................................................................................................................................................................................	23	1	9.00	9	0	0	0	0	0	9	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTAAA...................................................................................................................................................................................................................................................................................................................	25	1	8.00	8	7	0	0	0	0	1	0
.........................................................................................................................TGTTAACTGTAAGACTGT..........................................................................................................................................................................................................................................................................................................................	18	1	8.00	8	2	0	1	0	0	5	0
.........................................................................................................................TGTTAACTGTAAGACTGTGCT.......................................................................................................................................................................................................................................................................................................................	21	1	7.00	7	1	0	0	0	0	6	0
..........................................................................................................................GTTAACTGTAAGACTGTGT........................................................................................................................................................................................................................................................................................................................	19	1	7.00	7	3	0	0	0	2	2	0
..........................................................................................................................GTTAACTGTAAGACTGTGTCTA.....................................................................................................................................................................................................................................................................................................................	22	1	6.00	6	2	0	0	0	0	4	0
.......................................................................................................................AATGTTAACTGTAAGACTGTGTCT......................................................................................................................................................................................................................................................................................................................	24	1	6.00	6	1	0	2	0	2	1	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTCT....................................................................................................................................................................................................................................................................................................................	24	1	6.00	6	0	0	0	0	1	5	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTTCT.....................................................................................................................................................................................................................................................................................................................	23	1	5.00	5	0	0	0	0	2	3	0
..........................................................................................................................GTTAACTGTAAGACTGTGTCG......................................................................................................................................................................................................................................................................................................................	21	1	5.00	5	5	0	0	0	0	0	0
..........................................................................................................................GTTAACTGTAAGACTGTGTCTAAA...................................................................................................................................................................................................................................................................................................................	24	1	4.00	4	4	0	0	0	0	0	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCTAT....................................................................................................................................................................................................................................................................................................................	24	1	4.00	4	0	0	0	0	1	3	0
.........................................................................................................................TGTTAACTGTAAGACTGTCC........................................................................................................................................................................................................................................................................................................................	20	1	4.00	4	0	3	0	0	0	1	0
.........................................................................................................................TGTTAACTGTAAGACTGTC.........................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	0	1	0	0	2	0
.........................................................................................................................TGTTAACTGTAAGACTGTGTCAA.....................................................................................................................................................................................................................................................................................................................	23	1	3.00	3	3	0	0	0	0	0	0
...........................................................................................................................TTAACTGTAAGACTGTGTCTCT....................................................................................................................................................................................................................................................................................................................	22	1	3.00	3	0	0	0	0	1	2	0

dpe_7

scaffold_0:306037-306095 -

Known Ortholog

Canonical miRNA

intron

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads