ID:

dpe_689

 Coordinate:

scaffold_11187:438-588 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.6 -13.4 -13.2

Flybase annnotation

CDS [Dper\GL16694-cds]; exon [dper_GLEANR_18542:1]; intron [Dper\GL16694-in]

No Repeatable elements found

mature
  1. dpe_1245  scaffold_247:21606-21633 +
  2. dpe_689  scaffold_11187:536-563 -
star
  1. dpe_1245  scaffold_247:21680-21705 +
  2. dpe_689  scaffold_11187:464-489 -

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TGGCATTCGATCATCTACGAAGTGTGGAGAATGAGAGCATAAAGCAGGTGGTGCGTACATCTTCCATGACAGCATTAAATCCCCAATCACCAATCCCTCCACCCCACCTATCTTTGATCCCTCTGTGATCAGATCCGATCCATACTGAATCCGAGCAAGGTGCTACACAAATAGCTGGCCCAAACGCCAGTGGATTACTTCGAGCGCCTGGTTAACATATTTCTGCACGTGGTGATTCACATCATCAGCTT
***************************************************************************.............................(((((..(((.((((....((.((((......))))))....)).)).)))..))))).............**************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 M021
embryo
 V042
embryo
 V057
head
 V111
male body
....................................................................................................................................................................................................................TAACATATTTCTGCACGTGGTGATT.............. 25 0 3 12.67 38 37 0 1 0 0
....................................................................................................................................................................................................................TAACATATTTCTGCACGTGGTGAT............... 24 0 3 3.33 10 10 0 0 0 0
...........................................................................TAAATCCCCAATCACCAATCCCTCCACC.................................................................................................................................................... 28 0 2 3.00 6 6 0 0 0 0
..........................................................................TTAAATCCCCAATCACCAATCCCTC........................................................................................................................................................ 25 0 2 2.50 5 5 0 0 0 0
.....................................................................................................................................................................................AAACGCCAGTGGATTACTTCGAGCGCCT.......................................... 28 0 2 2.00 4 0 4 0 0 0
.....................................................................................................................................................................................................................AACATATTTCTGCACGTGGTGATT.............. 24 0 3 2.00 6 6 0 0 0 0
...............................TGAGAGCATAAAGCAGGTGGTGCGT................................................................................................................................................................................................... 25 0 2 1.50 3 3 0 0 0 0
.....................................................................................................................................................TCCGAGCAAGGTGCTACACAAATAGC............................................................................ 26 0 2 1.50 3 3 0 0 0 0
....................................................................................................................................................................................................................TAACATATGTCTGCACGTGGTGATT.............. 25 1 3 1.33 4 4 0 0 0 0
....................................................................................................................................................................................................................TAACATATTTCTGCACGTGGTGA................ 23 0 3 1.33 4 4 0 0 0 0
..........................................................................TTAAATCCCCAATCACCAATCCCTCC....................................................................................................................................................... 26 0 2 1.00 2 2 0 0 0 0
...............................TGAGAGCATAAAGCAGGTGGTGC..................................................................................................................................................................................................... 23 0 2 1.00 2 2 0 0 0 0
...............................TGAGAGCATAAAGCAGGTGGTGCGTA.................................................................................................................................................................................................. 26 0 2 1.00 2 2 0 0 0 0
..............................................................TCCATGACAGCATTAAATCCCCAATCA.................................................................................................................................................................. 27 0 2 1.00 2 0 2 0 0 0
....................................................................................................................................................................................................................TAACATATTTCTGCACGTGGTG................. 22 0 3 0.67 2 2 0 0 0 0
....................................................................................................................................................................................................................TAACATATTTCTGCACGTGGTGATTC............. 26 0 3 0.67 2 2 0 0 0 0
...............................................................................................................................................................................TGGCCCAAACGCCAGTGGATTACTT................................................... 25 0 3 0.67 2 2 0 0 0 0
.....................................................................................................................................................................................................................AACATATTTCTGCACGTGGTGAT............... 23 0 3 0.67 2 2 0 0 0 0
.................................................................................................................................................TGAATCCGAGCAAGGTGCTACACAAA................................................................................ 26 0 3 0.67 2 2 0 0 0 0
..........................................................................................................................................TCCATACTGAATCCGAGCAAGGTGC........................................................................................ 25 0 3 0.67 2 1 0 1 0 0
................................................................................................................................TCAGATCCGATCCATACTGAATCCGAG................................................................................................ 27 0 2 0.50 1 1 0 0 0 0
.......CGATCATCTACGAAGTGTGGAGAATG.......................................................................................................................................................................................................................... 26 0 2 0.50 1 1 0 0 0 0
.............................................................................................................ATCTTTGATCCCTCTGTGATCAGA...................................................................................................................... 24 0 2 0.50 1 1 0 0 0 0
........................................................................................................................................................................................CGCCAGTGGATTACTTCGAGCGCCTG......................................... 26 0 2 0.50 1 1 0 0 0 0
..........................................................................................................................................................................................CCAGTGGATTACTTCGAGCGCCTG......................................... 24 0 2 0.50 1 1 0 0 0 0
...............................TGAGAGCATAAAGCAGGTGGTG...................................................................................................................................................................................................... 22 0 2 0.50 1 1 0 0 0 0
..........................GAGAATGAGAGCATAAAGCAGGTGG........................................................................................................................................................................................................ 25 0 2 0.50 1 1 0 0 0 0
..........................................................................................................................................................................................CCAGTGGATTACTTCGAGCGCCTT......................................... 24 1 2 0.50 1 1 0 0 0 0
..........................................................................TTAAATCCCCAATCACCAATCCCTCCAC..................................................................................................................................................... 28 0 2 0.50 1 1 0 0 0 0
.....................................................................................................................................................TCCGAGCAAGGTGCTACACAAATA.............................................................................. 24 0 2 0.50 1 0 0 0 0 1
........................................................................................................................................................................................CGCCAGTGCATTACTTCGAGCGC............................................ 23 1 2 0.50 1 1 0 0 0 0
........................................................................................................................................................................................CGCCAGTGGATTACTTCGAGCGCCTGG........................................ 27 0 2 0.50 1 1 0 0 0 0
..........................................................................................................................................................................................CCAGTGGATTACTTCGAGCGCCT.......................................... 23 0 2 0.50 1 1 0 0 0 0
...............................TGAGAGCATAAAGCAGGTGGT....................................................................................................................................................................................................... 21 0 2 0.50 1 1 0 0 0 0
...............................TGAGAGCAAAAAGCAGGTGGTTCGTA.................................................................................................................................................................................................. 26 2 2 0.50 1 1 0 0 0 0
............................GAATGAGAGCATAAAGCAGGTGGTG...................................................................................................................................................................................................... 25 0 2 0.50 1 1 0 0 0 0
.......................................................................................................CCACCTATCTTTGATCCCTCTG.............................................................................................................................. 22 0 2 0.50 1 0 1 0 0 0
...........................................................................TAAATCCCCAATCACCAATCCCTCCAC..................................................................................................................................................... 27 0 2 0.50 1 1 0 0 0 0
..............................................................................................................................................................................................TGGATTACTTCGAGCGCCTG......................................... 20 0 2 0.50 1 1 0 0 0 0
..........................................................................................................................................................................................CCAGTGGATTACTTCGAGCGCCTGGT....................................... 26 0 2 0.50 1 1 0 0 0 0
...............................TGAGAGCATAAAGCAGGTGG........................................................................................................................................................................................................ 20 0 2 0.50 1 1 0 0 0 0
..........................................................................TTAAATCCGCAATCACCAATCCCTCCACC.................................................................................................................................................... 29 1 2 0.50 1 1 0 0 0 0
..................................................................TGACAGCATTAAATCCCCAATCAC................................................................................................................................................................. 24 0 2 0.50 1 1 0 0 0 0
.........................................................................................................................................................................................GCCAGTGGATTACTTCGAGCGCCTG......................................... 25 0 2 0.50 1 1 0 0 0 0
..........................................................................................................................................................................................CCAGTGGATTACTTCGAGCGCC........................................... 22 0 2 0.50 1 0 1 0 0 0
.......................................................................................................CCACCTATCTTTGATCCCTCTGTGA........................................................................................................................... 25 0 2 0.50 1 1 0 0 0 0
..........................................................................TTAAATCCCCAATCACCAATCCTTC........................................................................................................................................................ 25 1 2 0.50 1 1 0 0 0 0
...............................TGAGAGCAAAAAGCAGGTGGTG...................................................................................................................................................................................................... 22 1 2 0.50 1 1 0 0 0 0
....................................................................................................................................................................................CAAACGCCAGTGGATTACTTCGAGCGC............................................ 27 0 2 0.50 1 1 0 0 0 0
.....................................................................................................................................................TCCGAGCAAGGTGCTACACAAATAGCT........................................................................... 27 0 2 0.50 1 1 0 0 0 0
........................................................................CATTAAATCCCCAATCACCAATCCC.......................................................................................................................................................... 25 0 2 0.50 1 1 0 0 0 0
.........................................................................................................................................................................................GCCAGTGGATTACTTCGAGCGCCT.......................................... 24 0 2 0.50 1 0 1 0 0 0
....................................................................................................ACCCCACCTATCTTTGATCCCTCTG.............................................................................................................................. 25 0 2 0.50 1 1 0 0 0 0
.............................................................................................................................................ATACTGGATCTGAGCAAGGT.......................................................................................... 20 2 5 0.40 2 0 2 0 0 0
.....................................................................................................................................................................................................................AACATATTGCTGCACGTGGTGATT.............. 24 1 3 0.33 1 1 0 0 0 0
.....................................................................................................................................................................................AAACGCCAGTGGATTACTTCGAGCGA............................................ 26 1 3 0.33 1 1 0 0 0 0
....................................................................................................................................................................................................................TAACATATGTCTGCACGTGGTGAT............... 24 1 3 0.33 1 1 0 0 0 0
...........................................................................................................................................................................................................................TTTCTGCACGTGGTGATT.............. 18 0 3 0.33 1 1 0 0 0 0
TGGCATTCGATCATCTACGAAGTGTGG................................................................................................................................................................................................................................ 27 0 3 0.33 1 1 0 0 0 0
........................................................................................................................................................................................CGCCAGTGGATTACTTCGAG............................................... 20 0 3 0.33 1 1 0 0 0 0
...................................................................................................................................................................................................TACTTCGAGCGCCTGGTTA..................................... 19 0 3 0.33 1 1 0 0 0 0
TGGCATTCGATCATCTACGAAGTG................................................................................................................................................................................................................................... 24 0 3 0.33 1 1 0 0 0 0
.....................................................................................................................................TCCGATCCATACTGAATCCGAGC............................................................................................... 23 0 3 0.33 1 1 0 0 0 0
....................................................................................................................................................................................................................TAACATATTTCTGCACGTGG................... 20 0 3 0.33 1 0 0 1 0 0
....................................................................................................................................................................................CAAACGCCAGTGGATTACTTCGAGCG............................................. 26 0 3 0.33 1 1 0 0 0 0
....................................................................................................................................................................................................................TAACATATATCTGCACGTGGTGATT.............. 25 1 3 0.33 1 1 0 0 0 0
.........................................................................................................................................................................................GCCAGTGGATTACTTCGAGC.............................................. 20 0 3 0.33 1 1 0 0 0 0
....................................................................................................................................................................................................................TAACATATTTCTGCGCGTGGTGAT............... 24 1 3 0.33 1 1 0 0 0 0
.................................................................................................................................................TGAATCCGAGCAAGGTGCTACACAA................................................................................. 25 0 3 0.33 1 0 0 1 0 0
.......................................................................................................................................CGATCCATGCTGAATCCGAGCAAGGTGC........................................................................................ 28 1 3 0.33 1 1 0 0 0 0
.................................................................................................................................................TGAATCCGAGCAAGGTGCTACA.................................................................................... 22 0 3 0.33 1 1 0 0 0 0
...............................................................................................................................................................................TGGCCCAAGCGCCAGTGGATTACTT................................................... 25 1 3 0.33 1 1 0 0 0 0
..........................................................................................................................................................................................CCAGTGGATTACTTCGAGCG............................................. 20 0 3 0.33 1 1 0 0 0 0
.................................................................................................................................................TGAATCCGAGCAAGGTGCTACAC................................................................................... 23 0 3 0.33 1 1 0 0 0 0
....................................................................................................................................................................................CAAACGCCAGTGGATTACTTCGA................................................ 23 0 3 0.33 1 1 0 0 0 0
....................................................................................................................................................................................................................TAACATATTTCTCCACGTGGTGATT.............. 25 1 3 0.33 1 1 0 0 0 0
.....................................................................................................................................TCCGATCCATACTGAATCCGAGCAAGG........................................................................................... 27 0 3 0.33 1 1 0 0 0 0
...................................................................................................................................GATCCGATCCATACTGAATCCGAGC............................................................................................... 25 0 3 0.33 1 1 0 0 0 0
....................................................................................................................................ATCCGATCCATACTGAATCCGA................................................................................................. 22 0 3 0.33 1 1 0 0 0 0
................................GAGAGCATAAAGCAGGTGGTGCGTA.................................................................................................................................................................................................. 25 0 3 0.33 1 1 0 0 0 0
.........................................................CATCTTCCCTGGCAGCATTA.............................................................................................................................................................................. 20 2 4 0.25 1 0 0 0 1 0
.....................................................................................................................................................TCCGAGCAAGGTGCTACACAAAT............................................................................... 23 0 4 0.25 1 1 0 0 0 0
...................................AGAATAAAGCTGGTGGTGC..................................................................................................................................................................................................... 19 2 5 0.20 1 0 0 0 1 0
.........................................................CATCTTGCCTGACAGCATTAGA............................................................................................................................................................................ 22 3 5 0.20 1 0 0 0 1 0
.............................................................................................................GTCTTTGATCCGTCTGTGAG.......................................................................................................................... 20 3 11 0.09 1 0 0 0 0 1
..................GAAGTGTGGTGATTGAGGG...................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0

Anti-sense strand reads

ACCGTAAGCTAGTAGATGCTTCACACCTCTTACTCTCGTATTTCGTCCACCACGCATGTAGAAGGTACTGTCGTAATTTAGGGGTTAGTGGTTAGGGAGGTGGGGTGGATAGAAACTAGGGAGACACTAGTCTAGGCTAGGTATGACTTAGGCTCGTTCCACGATGTGTTTATCGACCGGGTTTGCGGTCACCTAATGAAGCTCGCGGACCAATTGTATAAAGACGTGCACCACTAAGTGTAGTAGTCGAA
****************************************************************************.............................(((((..(((.((((....((.((((......))))))....)).)).)))..))))).............*************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V111
male body		 M042
female body
 V057
head
 V050
head
 M021
embryo
 V042
embryo
.........................................................GTAGAATGGACTGTCATAAT.............................................................................................................................................................................. 20 3 4 48.50 194 149 22 12 8 3 0
........................................................TGTAGAATGGACTGTCATAAT.............................................................................................................................................................................. 21 3 4 45.25 181 110 28 27 16 0 0
......................................................................................................................................GGCTAGGTATGACTTAGGCTCGTTC............................................................................................ 25 0 3 2.67 8 0 8 0 0 0 0
.......................................................CTGTAGAAGGGACTGTCATAAT.............................................................................................................................................................................. 22 3 3 1.00 3 2 0 1 0 0 0
........................................................TGTAGAAAGGACTGTCATAAT.............................................................................................................................................................................. 21 3 7 1.00 7 5 0 2 0 0 0
........................................................................................................................................CTAGGTATGACTTAGGCTCGTTC............................................................................................ 23 0 3 1.00 3 0 3 0 0 0 0
..................CTTCACACCTCTTACTCTCGTAT.................................................................................................................................................................................................................. 23 0 2 1.00 2 0 2 0 0 0 0
........................................................TGTAGATGGGACTGTCATAAT.............................................................................................................................................................................. 21 3 3 0.67 2 2 0 0 0 0 0
.....................................................................................................................................AGGCTAGGTATGACTTAGGCTCGTTC............................................................................................ 26 0 3 0.67 2 0 2 0 0 0 0
.........................................................GTAGAAGGGACTGTCATAAT.............................................................................................................................................................................. 20 2 3 0.67 2 1 0 0 0 1 0
............................................................GAAGGTACTGTCGTAATTTAGGGGT...................................................................................................................................................................... 25 0 2 0.50 1 0 1 0 0 0 0
......................................................................................................................GGGAGACACTAGTCTAGGCTA................................................................................................................ 21 0 2 0.50 1 0 1 0 0 0 0
.........................................................................................................TGGATAGAAACTAGGGAGACACTAG......................................................................................................................... 25 0 2 0.50 1 0 1 0 0 0 0
.........................................................................................................TGGATAGAAACTAGGGAGACACT........................................................................................................................... 23 0 2 0.50 1 0 1 0 0 0 0
..........................................................................................................................................................................TATCGACCGGGTTTGCGGTCACCTAAT...................................................... 27 0 2 0.50 1 0 1 0 0 0 0
..........................................................................................................GGATAGAAACTAGGGAGACACTAGTCG...................................................................................................................... 27 1 2 0.50 1 0 1 0 0 0 0
...............ATGCTTCACACCTCTTACTCTCGTAT.................................................................................................................................................................................................................. 26 0 2 0.50 1 0 1 0 0 0 0
......................................................................................................GGGTGGATAGAAACTAGGGAGACA............................................................................................................................. 24 0 2 0.50 1 0 1 0 0 0 0
..........................................................................................................GGATAGAAACTAGGGAGACACTAGTC....................................................................................................................... 26 0 2 0.50 1 0 1 0 0 0 0
........................................................TGTAGAATGGACTGTCATAA............................................................................................................................................................................... 20 3 9 0.44 4 0 4 0 0 0 0
...............................................................................................................................................TGACTTAGGCTCGTTCCACGATGTGT.................................................................................. 26 0 3 0.33 1 0 1 0 0 0 0
........................................................................................................................................................................................................GCTCGCGGACCAATTGTATAAA............................. 22 0 3 0.33 1 0 1 0 0 0 0
.........................................................................................................................................................................................................CTCGCGGACCAATTGTATAAAGACG......................... 25 0 3 0.33 1 0 1 0 0 0 0
...........................................................................................TTAGGGTAGTGGGGTGGAT............................................................................................................................................. 19 2 3 0.33 1 1 0 0 0 0 0
.....................................................................................................................................................................................................GAAGCTCGCGGACCAATTGTATAAA............................. 25 0 3 0.33 1 0 1 0 0 0 0
........................................................TGTAGAAGGGACTGTCATAAT.............................................................................................................................................................................. 21 2 3 0.33 1 1 0 0 0 0 0
.....................................................................................................................................AGGCCAGGTATGACTTAGGCTCGTTC............................................................................................ 26 1 3 0.33 1 0 1 0 0 0 0
...........................................................AGAAGGTACTGTCGTAATTTAGGGG....................................................................................................................................................................... 25 0 3 0.33 1 0 1 0 0 0 0
.........................................................................................................................................TAGGTATGACTTAGGCTCGTTC............................................................................................ 22 0 3 0.33 1 0 1 0 0 0 0
......................................................................................................................................................................................................AAGCTCGCGGACCAATTGTATAAA............................. 24 0 3 0.33 1 0 1 0 0 0 0
.............................................................AAGGTACTGTCGTAATTT............................................................................................................................................................................ 18 0 3 0.33 1 0 1 0 0 0 0
.......................................................................................................................................GCTAGGTATGACTTAGGCTCGTTC............................................................................................ 24 0 3 0.33 1 0 1 0 0 0 0
.......................................................................................................................................GCTAGGTTTGACTTAGGCTCGTTC............................................................................................ 24 1 3 0.33 1 0 1 0 0 0 0
........................ACCTCTTAATCCCGTATTT................................................................................................................................................................................................................ 19 2 3 0.33 1 0 0 1 0 0 0
...............................................................................................................................................................................CCCGGGTTTGCGGTCACCTAAT...................................................... 22 1 3 0.33 1 0 1 0 0 0 0
....................................................................................AAAGTGGTTAGGGAGGTGGGGT................................................................................................................................................. 22 2 4 0.25 1 0 1 0 0 0 0
........................................................TGTAGAATGGACTGTCGTAAT.............................................................................................................................................................................. 21 2 4 0.25 1 1 0 0 0 0 0
.CCGTAAGCTAGTAGATCCTTCACACCT............................................................................................................................................................................................................................... 27 1 4 0.25 1 0 0 0 0 1 0
.........................................................GTAGAATGGACTGTCATAA............................................................................................................................................................................... 19 3 14 0.21 3 0 3 0 0 0 0
.........................................................GTAGAACGGACTGTCATAAT.............................................................................................................................................................................. 20 3 5 0.20 1 0 1 0 0 0 0
........................................................TGTAGCAGTTACTGTCATAAT.............................................................................................................................................................................. 21 3 5 0.20 1 0 0 1 0 0 0
...............................................................................TGGGGTTAGTGGATAGGGTGG....................................................................................................................................................... 21 3 7 0.14 1 0 0 1 0 0 0
........................................................TGTAGAAGGGAGTGTCATAA............................................................................................................................................................................... 20 3 9 0.11 1 0 1 0 0 0 0
................................................................................GGGGATAGTAGTGAGGGAGGT...................................................................................................................................................... 21 3 11 0.09 1 0 0 1 0 0 0
..........................................................................................GTTTGGGAGGTGGTGTGG............................................................................................................................................... 18 2 14 0.07 1 0 1 0 0 0 0
........................................................................................TCGGTAGGGAGGTGGGGCGGA.............................................................................................................................................. 21 3 15 0.07 1 0 0 1 0 0 0
................................................................................GGGGGTAGTAGTGAGGGAGGT...................................................................................................................................................... 21 3 17 0.06 1 0 0 0 1 0 0
..........................................................................................................................................TGGTATACCTTAGGCTCGT.............................................................................................. 19 3 20 0.05 1 0 0 0 0 0 1
..........................................................TAGAATGGACTGTCATAAT.............................................................................................................................................................................. 19 3 20 0.05 1 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_11187:388-638 - dpe_689 TGGCATTCGATCATCTACGAAGTGTGGAGAATGAGAGCATAAAGCAGGTGGTGCGTACATCTTCCATGACAGCATTAAATCCCCAATCACCAATCCCTCCACCCCACCTATCTTTGATCCCTCTGTGATCAGATCCGATCCATACTGAATCCGAGCAAGGTGCTACACAAATAGCTGGCCCAAACGCCAGTGGATTACTTCGAGCGCCTGGTTAACATATTTCTGCACGTGGTGATTCACATCATCAGCTT---------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004921:1026874-1026962 + --------------------------------------------------------------------------------------------------------------------------------------------------AA----------------------ATGGTTTAGTCAAATGCCGATGGATTATTTTAAAGACATGGTTGAAAATTTCCTACTAGCAGCCGTTTATATAATGAGATCGTTAAT---------------------------------------------------------------------------------------------------
droMoj3 scaffold_6680:6805053-6805269 + ----------------------------------------------------------------------------------------------CCCTTCGCCCAAGCCATCTTCAAACTGACTGA--------------------GAATCCACGCAAGGTGTTAGAAAAATGGTGGGCTCAAACGCCGTCTGAATACTTTGAGCAAATGGTCAATAACTTTTTGCATGTGGCGATGCACATCATCAGCTTTAAAATGGGCATTGAGGTGATCAATCACAATGAACCGCGTCA-----GAAGAAGGTAATCGTATGCA-------------T-CTATTTTCCAATACTTT------
droBia1 scf7180000300910:1419749-1419943 + --------------------------------------------------------------------------------------------------------------------------------------------------GAATCCGCGCAAGGTGCTGATCAAGTGGCTGGCCCAAACGCCGGCTGAGTACTTTGAGCATCTTGTCCAGAACTTCTTGCACGTGGTTGTGCACATAATTAGCTTTAAAATGGGCTTGACTGCCGTCAGTCCCAGCGCCGAAATTCGAAATTCGGTAGGGTATCCGTAATCAAATATGAAATGTATGCTA-ATTTC--------------
droTak1 scf7180000414671:299692-299861 + --------------------------------------------------------------------------------------------------------------------------------------------------GAATCCACGCAAGGTGCTGATGAAGTGGCTCTCGCAAACGCCGGCTGAATACTTTGAGCATCTTGTCCAGAACTTCTTGCACGTAGTTGTGCACATTATAAGCTTCAAAATGGGCTTGGCGGCGGTCAATCCGAGCGCCGAAAGGCG-----TCATAG----------GGTA-------------T-ATAATTTACAAA-----------
droEug1 scf7180000409007:139247-139425 + --------------------------------------------------------------------------------------------------------------------------------------------------GAATCCGCGCAAGGTGTTGATAAAGTGGCTGTCCCAAACAACAGCTGAGTACTTTGAGCATCTTGTCCAGAACTTCTTGCACGTTGTTATCCATATAATTAGTTTCAATATGGGCTTGACTGCCGTCAGTCCCAGTGCCGAGAGGCG-----TCACAG----------GGCA-------------A-GTAATTTTCAATTTAATTTTG--
dm3 chr3L:1316171-1316351 + --------------------------------------------------------------------------------------------------------------------------------------------------GAACCCACGGAAAGTGCTGAACAAGTGGTTGGCCCAAACACCGGCTGAATACTTCGAGCATCTTGTCCAGAACTTCTTGCATGTTGTCATCCATATTATAAGTTTCAAAATGGGCTTGGCTGCCGCTAGTCCCAGCGCCGAAAGACG-----TCAACA----------GGTA-------------T-TTAGATTTCAATATAGGGCCATA
droSim2 3l:1240228-1240406 + --------------------------------------------------------------------------------------------------------------------------------------------------GAATCCACGGAAAGTGCTGAGCAAGTGGTTGGCCCAAACACCGACTGAATACTTCGAGCATCTTGTCCAGAACTTCTTGCATGTTGTCGTCCATATTATAAGTTTCAAAATGGGCTTGGCTGCCGCTAGTCCCAGAGCCGAAAGGCG-----TCAACA----------GGTA-------------T-TTAGATTTCAATATAGGGCCA--
droSec2 scaffold_2:1358924-1359102 + --------------------------------------------------------------------------------------------------------------------------------------------------GAATCCACGGAAAGTGCTGAGCAAGTGGTTGGCCCAAACACCGACTGAATACTTCGAGCATCTTGTCCAGAACTTCTTGCATGTTGTCGTCCATATTATAAGTTTCAAAATGGGCTTGGCTGCCGCTAGTCCCAGAGCCGAAAGGCG-----TCAACA----------GGTA-------------T-TTAGATTTCAATATAGGGCCA--
droYak3 3L:1274925-1275104 + --------------------------------------------------------------------------------------------------------------------------------------------------GAACCCACGAAAAGTGCTGATCAAGTGGCTGGCCCAAACTCCGGCTGAATACTTTGAGCGCCTTGTCCAGAACTGCTTAAATGTTGTCGTCCATATTATTAGTTTCAAAATGGGCTTGGCTGCCATTAGTCCCAGCGTGGAAAGACG-----TCAAAG----------GGTA-------------A-TTACGTTTAAAAATAGTGTCAT-
droEre2 scaffold_4784:1299012-1299190 + --------------------------------------------------------------------------------------------------------------------------------------------------GAACCCACGAAAAGTGCTGATCAAGTGGCTGGCCCAAACACCGGCTGAATACTTTGAGCGCCTTGTCCAGAACTGCTTGCATGTAGTCGTCCATATTATAAGTTTCAAAATGGGCTTGGTTGCCATTAGTCCCAGCGCCGAGAGACG-----TGAAAG----------GGTA-------------T-TTAGGTTTCACTATAGTGTCA--

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
TGGCATTCGATCATCTACGAAGTGTGGAGAATGAGAGCATAAAGCAGGTGGTGCGTACATCTTCCATGACAGCATTAAATCCCCAATCACCAATCCCTCCACCCCACCTATCTTTGATCCCTCTGTGATCAGATCCGATCCATACTGAATCCGAGCAAGGTGCTACACAAATAGCTGGCCCAAACGCCAGTGGATTACTTCGAGCGCCTGGTTAACATATTTCTGCACGTGGTGATTCACATCATCAGCTT---------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................................................................................................................................................................................................................TAACATATTTCTGCACGTGGTGATT.......................................................................................................................25312.67380371000
....................................................................................................................................................................................................................TAACATATTTCTGCACGTGGTGAT........................................................................................................................2433.33100100000
...........................................................................TAAATCCCCAATCACCAATCCCTCCACC.............................................................................................................................................................................................................................................................2823.006060000
..........................................................................TTAAATCCCCAATCACCAATCCCTC.................................................................................................................................................................................................................................................................2522.505050000
.....................................................................................................................................................................................AAACGCCAGTGGATTACTTCGAGCGCCT...................................................................................................................................................2822.004400000
.....................................................................................................................................................................................................................AACATATTTCTGCACGTGGTGATT.......................................................................................................................2432.006060000
...............................TGAGAGCATAAAGCAGGTGGTGCGT............................................................................................................................................................................................................................................................................................................2521.503030000
.....................................................................................................................................................TCCGAGCAAGGTGCTACACAAATAGC.....................................................................................................................................................................................2621.503030000
....................................................................................................................................................................................................................TAACATATTTCTGCACGTGGTGA.........................................................................................................................2331.334040000
..........................................................................TTAAATCCCCAATCACCAATCCCTCC................................................................................................................................................................................................................................................................2621.002020000
...............................TGAGAGCATAAAGCAGGTGGTGC..............................................................................................................................................................................................................................................................................................................2321.002020000
...............................TGAGAGCATAAAGCAGGTGGTGCGTA...........................................................................................................................................................................................................................................................................................................2621.002020000
..............................................................TCCATGACAGCATTAAATCCCCAATCA...........................................................................................................................................................................................................................................................................2721.002200000
....................................................................................................................................................................................................................TAACATATTTCTGCACGTGGTG..........................................................................................................................2230.672020000
....................................................................................................................................................................................................................TAACATATTTCTGCACGTGGTGATTC......................................................................................................................2630.672020000
...............................................................................................................................................................................TGGCCCAAACGCCAGTGGATTACTT............................................................................................................................................................2530.672020000
.....................................................................................................................................................................................................................AACATATTTCTGCACGTGGTGAT........................................................................................................................2330.672020000
.................................................................................................................................................TGAATCCGAGCAAGGTGCTACACAAA.........................................................................................................................................................................................2630.672020000
..........................................................................................................................................TCCATACTGAATCCGAGCAAGGTGC.................................................................................................................................................................................................2530.672011000
................................................................................................................................TCAGATCCGATCCATACTGAATCCGAG.........................................................................................................................................................................................................2720.501010000
.......CGATCATCTACGAAGTGTGGAGAATG...................................................................................................................................................................................................................................................................................................................................2620.501010000
.............................................................................................................ATCTTTGATCCCTCTGTGATCAGA...............................................................................................................................................................................................................................2420.501010000
........................................................................................................................................................................................CGCCAGTGGATTACTTCGAGCGCCTG..................................................................................................................................................2620.501010000
..........................................................................................................................................................................................CCAGTGGATTACTTCGAGCGCCTG..................................................................................................................................................2420.501010000
...............................TGAGAGCATAAAGCAGGTGGTG...............................................................................................................................................................................................................................................................................................................2220.501010000
..........................GAGAATGAGAGCATAAAGCAGGTGG.................................................................................................................................................................................................................................................................................................................2520.501010000
..........................................................................................................................................................................................CCAGTGGATTACTTCGAGCGCCTT..................................................................................................................................................2420.501010000
..........................................................................TTAAATCCCCAATCACCAATCCCTCCAC..............................................................................................................................................................................................................................................................2820.501010000
.....................................................................................................................................................TCCGAGCAAGGTGCTACACAAATA.......................................................................................................................................................................................2420.501000001
........................................................................................................................................................................................CGCCAGTGGATTACTTCGAGCGCCTGG.................................................................................................................................................2720.501010000
..........................................................................................................................................................................................CCAGTGGATTACTTCGAGCGCCT...................................................................................................................................................2320.501010000
...............................TGAGAGCATAAAGCAGGTGGT................................................................................................................................................................................................................................................................................................................2120.501010000
............................GAATGAGAGCATAAAGCAGGTGGTG...............................................................................................................................................................................................................................................................................................................2520.501010000
.......................................................................................................CCACCTATCTTTGATCCCTCTG.......................................................................................................................................................................................................................................2220.501100000
...........................................................................TAAATCCCCAATCACCAATCCCTCCAC..............................................................................................................................................................................................................................................................2720.501010000
..............................................................................................................................................................................................TGGATTACTTCGAGCGCCTG..................................................................................................................................................2020.501010000
..........................................................................................................................................................................................CCAGTGGATTACTTCGAGCGCCTGGT................................................................................................................................................2620.501010000
...............................TGAGAGCATAAAGCAGGTGG.................................................................................................................................................................................................................................................................................................................2020.501010000
..................................................................TGACAGCATTAAATCCCCAATCAC..........................................................................................................................................................................................................................................................................2420.501010000
.........................................................................................................................................................................................GCCAGTGGATTACTTCGAGCGCCTG..................................................................................................................................................2520.501010000
..........................................................................................................................................................................................CCAGTGGATTACTTCGAGCGCC....................................................................................................................................................2220.501100000
.......................................................................................................CCACCTATCTTTGATCCCTCTGTGA....................................................................................................................................................................................................................................2520.501010000
....................................................................................................................................................................................CAAACGCCAGTGGATTACTTCGAGCGC.....................................................................................................................................................2720.501010000
.....................................................................................................................................................TCCGAGCAAGGTGCTACACAAATAGCT....................................................................................................................................................................................2720.501010000
........................................................................CATTAAATCCCCAATCACCAATCCC...................................................................................................................................................................................................................................................................2520.501010000
.........................................................................................................................................................................................GCCAGTGGATTACTTCGAGCGCCT...................................................................................................................................................2420.501100000
....................................................................................................ACCCCACCTATCTTTGATCCCTCTG.......................................................................................................................................................................................................................................2520.501010000
.....................................................................................................................................................................................AAACGCCAGTGGATTACTTCGAGCGA.....................................................................................................................................................2630.331010000
...........................................................................................................................................................................................................................TTTCTGCACGTGGTGATT.......................................................................................................................1830.331010000
TGGCATTCGATCATCTACGAAGTGTGG.........................................................................................................................................................................................................................................................................................................................................2730.331010000
........................................................................................................................................................................................CGCCAGTGGATTACTTCGAG........................................................................................................................................................2030.331010000
...................................................................................................................................................................................................TACTTCGAGCGCCTGGTTA..............................................................................................................................................1930.331010000
TGGCATTCGATCATCTACGAAGTG............................................................................................................................................................................................................................................................................................................................................2430.331010000
.....................................................................................................................................TCCGATCCATACTGAATCCGAGC........................................................................................................................................................................................................2330.331010000
....................................................................................................................................................................................................................TAACATATTTCTGCACGTGG............................................................................................................................2030.331001000
....................................................................................................................................................................................CAAACGCCAGTGGATTACTTCGAGCG......................................................................................................................................................2630.331010000
.........................................................................................................................................................................................GCCAGTGGATTACTTCGAGC.......................................................................................................................................................2030.331010000
.................................................................................................................................................TGAATCCGAGCAAGGTGCTACACAA..........................................................................................................................................................................................2530.331001000
.................................................................................................................................................TGAATCCGAGCAAGGTGCTACA.............................................................................................................................................................................................2230.331010000
..........................................................................................................................................................................................CCAGTGGATTACTTCGAGCG......................................................................................................................................................2030.331010000
.................................................................................................................................................TGAATCCGAGCAAGGTGCTACAC............................................................................................................................................................................................2330.331010000
....................................................................................................................................................................................CAAACGCCAGTGGATTACTTCGA.........................................................................................................................................................2330.331010000
.....................................................................................................................................TCCGATCCATACTGAATCCGAGCAAGG....................................................................................................................................................................................................2730.331010000
...................................................................................................................................GATCCGATCCATACTGAATCCGAGC........................................................................................................................................................................................................2530.331010000
....................................................................................................................................ATCCGATCCATACTGAATCCGA..........................................................................................................................................................................................................2230.331010000
................................GAGAGCATAAAGCAGGTGGTGCGTA...........................................................................................................................................................................................................................................................................................................2530.331010000
.....................................................................................................................................................TCCGAGCAAGGTGCTACACAAAT........................................................................................................................................................................................2340.251010000
droWil2
--------------------------------------------------------------------------------------------------------------------------------------------------AA----------------------ATGGTTTAGTCAAATGCCGATGGATTATTTTAAAGACATGGTTGAAAATTTCCTACTAGCAGCCGTTTATATAATGAGATCGTTAAT---------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droMoj3
----------------------------------------------------------------------------------------------CCCTTCGCCCAAGCCATCTTCAAACTGACTGA--------------------GAATCCACGCAAGGTGTTAGAAAAATGGTGGGCTCAAACGCCGTCTGAATACTTTGAGCAAATGGTCAATAACTTTTTGCATGTGGCGATGCACATCATCAGCTTTAAAATGGGCATTGAGGTGATCAATCACAATGAACCGCGTCA-----GAAGAAGGTAATCGTATGCA-------------T-CTATTTTCCAATACTTT------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................................................................................................................GCAAGGTGTTAGAAAAATGGTGGGCTCA..............................................................................................................................................................................2811.001000001
.........................................................................................................................................................................................................................................................TTTAAAATGGGCATTGAGGTG......................................................................................2111.001100000
..............................................................................................................................................................................................................................................................................ATCAATCACAATGAACCGC...................................................................1911.001100000
............................................................................................................................................................................................GTCTGAATACTTTGAGCAAAT...................................................................................................................................................2111.001000001
...............................................................................................................................................................................................................................................CATCATCAGCTTTAAAAT...................................................................................................1811.001000100
droBia1
--------------------------------------------------------------------------------------------------------------------------------------------------GAATCCGCGCAAGGTGCTGATCAAGTGGCTGGCCCAAACGCCGGCTGAGTACTTTGAGCATCTTGTCCAGAACTTCTTGCACGTGGTTGTGCACATAATTAGCTTTAAAATGGGCTTGACTGCCGTCAGTCCCAGCGCCGAAATTCGAAATTCGGTAGGGTATCCGTAATCAAATATGAAATGTATGCTA-ATTTC--------------SizeHit CountTotal NormTotal
No Reads
droTak1
--------------------------------------------------------------------------------------------------------------------------------------------------GAATCCACGCAAGGTGCTGATGAAGTGGCTCTCGCAAACGCCGGCTGAATACTTTGAGCATCTTGTCCAGAACTTCTTGCACGTAGTTGTGCACATTATAAGCTTCAAAATGGGCTTGGCGGCGGTCAATCCGAGCGCCGAAAGGCG-----TCATAG----------GGTA-------------T-ATAATTTACAAA-----------SizeHit CountTotal NormTotal
No Reads
droEug1
--------------------------------------------------------------------------------------------------------------------------------------------------GAATCCGCGCAAGGTGTTGATAAAGTGGCTGTCCCAAACAACAGCTGAGTACTTTGAGCATCTTGTCCAGAACTTCTTGCACGTTGTTATCCATATAATTAGTTTCAATATGGGCTTGACTGCCGTCAGTCCCAGTGCCGAGAGGCG-----TCACAG----------GGCA-------------A-GTAATTTTCAATTTAATTTTG--SizeHit CountTotal NormTotal
No Reads
dm3
--------------------------------------------------------------------------------------------------------------------------------------------------GAACCCACGGAAAGTGCTGAACAAGTGGTTGGCCCAAACACCGGCTGAATACTTCGAGCATCTTGTCCAGAACTTCTTGCATGTTGTCATCCATATTATAAGTTTCAAAATGGGCTTGGCTGCCGCTAGTCCCAGCGCCGAAAGACG-----TCAACA----------GGTA-------------T-TTAGATTTCAATATAGGGCCATASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................................................................................................................................................................................................................TTTCAAAATGGGCTTGGCTGCCGC....................................................................................2413.0030000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................TAGTCCCAGCGCCGAAAGACG-----T.........................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................AGTCCCAGCGCCGAAAGA.................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................ATCTTGTCCAGAACTTCTTGC..................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................CCACGGAAAGTGCTGAACAAGTGG......................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.......................................................................................................................................................CACGGAAAGTGCTGAACAAGTGGT.....................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................AAAGTGCTGAACAAGTGGTTG...................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...................................................................................................................................................................................................TACTTCGAGCATCTTGTCCAGAACT........................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................................................................................................................CTTCGAGCATCTTGTCCAGAACTTC......................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................TGCCGCTAGTCCCAGCGCCGAAAGACG-----TC........................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................................................................................................................................................................................TTGGCTGCCGCTAGTCCC.............................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................TGCTGAACAAGTGGTTGGCCCAAACACC........................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................AACCCACGGAAAGTGCTGAAC............................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................CCAGAACTTCTTGCATGTTGTCATC.......................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................AAGTTTCAAAATGGGCTTGGC..........................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................GGGCTTGGCTGCCGCTAGTC...............................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................TTGTCCAGAACTTCTTGCATGTTGT...........................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................ATCCATATTATAAGTTTCAAAATGGGC...............................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................GCTAGTCCCAGCGCCGAAAGA.................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................TGGCTGCCGCTAGTCCCA............................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................AAGTGGTTGGCCCAAACACCGGCTGAA.................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................CGAAAGACG-----TCAACA----------GGT.......................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................TGCTGAACAAGTGGTTGGCAT...............................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................AACACCGGCTGAATACTTCGAGCA......................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................AGCGCCGAAAGACG-----TCAAC.....................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................TACTTCGAGCATCTTGTCCAGAACTTC......................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................AGTTTCAAAATGGGCTTGGCT.........................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................TTTCAAAATGGGCTTGGCTGCCG.....................................................................................2311.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................CACCGGCTGAATACTTCGAGC.......................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................ATACTTCGAGCATCTTGTCCAGAAC.........................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................TGAATACTTCGAGCATCTTGTC...............................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................CCCAAACACCGGCTGAATACTTCGAGC.......................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................TACTTCGAGCATCTTGTCCAGAA..........................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................GGCTGAATACTTCGAGCATCTT..................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.................................................................................................................................................................................................................................................................................AGTCCCAGCGCCGAAAGACG-----TCAAC.....................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................CCACGGAAAGTGCTGAACAAGT........................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................TGCATGTTGTCATCCATAAC.................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................TGCATGTTGTCATCCATATTATA..............................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................CTTCGAGCATCTTGTCCAGAACT........................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..................................................................................................................................................................................................................................................................................GTCCCAGCGCCGAAAGACG-----TCAACA----------..........................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
................................................................................................................................................................................................................................GCATGTTGTCATCCATATTATA..............................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................CACGGAAAGTGCTGAACAAGTGGTT....................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................GAACAAGTGGTTGGCCCAAACAA.........................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
droSim2
--------------------------------------------------------------------------------------------------------------------------------------------------GAATCCACGGAAAGTGCTGAGCAAGTGGTTGGCCCAAACACCGACTGAATACTTCGAGCATCTTGTCCAGAACTTCTTGCATGTTGTCGTCCATATTATAAGTTTCAAAATGGGCTTGGCTGCCGCTAGTCCCAGAGCCGAAAGGCG-----TCAACA----------GGTA-------------T-TTAGATTTCAATATAGGGCCA--SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................................................................................TATTATAAGTTTCAAAATGGGCTT.............................................................................................2412.00220000000000000000
.................................................................................................................................................................................................AATACTTCGAGCATCTTGTCCA.............................................................................................................................................2211.00100000001000000000
....................................................................................................................................................................GAGCAAGTGGTTGGCCCAAACACCGAC.....................................................................................................................................................................2711.00100000000000100000
..................................................................................................................................................................................................................GTCCAGAACTTCTTGCATGTT.............................................................................................................................2111.00101000000000000000
........................................................................................................................................................................................CACCGACTGAATACTTCGAGCATCTTG.................................................................................................................................................2711.00100010000000000000
droSec2
--------------------------------------------------------------------------------------------------------------------------------------------------GAATCCACGGAAAGTGCTGAGCAAGTGGTTGGCCCAAACACCGACTGAATACTTCGAGCATCTTGTCCAGAACTTCTTGCATGTTGTCGTCCATATTATAAGTTTCAAAATGGGCTTGGCTGCCGCTAGTCCCAGAGCCGAAAGGCG-----TCAACA----------GGTA-------------T-TTAGATTTCAATATAGGGCCA--SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................................................................................................................GTGCTGAGCAAGTGGTTGGCCC...............................................................................................................................................................................2211.0010010
.............................................................................................................................................................................................................ATCTTGTCCAGAACTTCTTGCATGTTGT...........................................................................................................................2811.0010010
...............................................................................................................................................................GTGCTGAGCAAGTGGTTGGCC................................................................................................................................................................................2111.0010100
...................................................................................................................................................................TGAGCAAGTGGTTGGCCCA..............................................................................................................................................................................1911.0011000
droYak3
--------------------------------------------------------------------------------------------------------------------------------------------------GAACCCACGAAAAGTGCTGATCAAGTGGCTGGCCCAAACTCCGGCTGAATACTTTGAGCGCCTTGTCCAGAACTGCTTAAATGTTGTCGTCCATATTATTAGTTTCAAAATGGGCTTGGCTGCCATTAGTCCCAGCGTGGAAAGACG-----TCAAAG----------GGTA-------------A-TTACGTTTAAAAATAGTGTCAT-SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............................................................................................................................................................AAGTGCTGATCAAGTGGCT....................................................................................................................................................................................1911.00100000010000
....................................................................................................................................................................................................ACTTTGAGCGCCTTGTCCAGAACTGCT.....................................................................................................................................2711.00100000010000
droEre2
--------------------------------------------------------------------------------------------------------------------------------------------------GAACCCACGAAAAGTGCTGATCAAGTGGCTGGCCCAAACACCGGCTGAATACTTTGAGCGCCTTGTCCAGAACTGCTTGCATGTAGTCGTCCATATTATAAGTTTCAAAATGGGCTTGGTTGCCATTAGTCCCAGCGCCGAGAGACG-----TGAAAG----------GGTA-------------T-TTAGGTTTCACTATAGTGTCA--SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................................................................................................................................................................................CTGCTTGCATGTAGTCGTCCA.....................................................................................................................2111.0011000000
.....................................................................................................................................................................................AAACACCGGCTGAATACTTTGAGCGC.....................................................................................................................................................2611.0010000100
.......................................................................................................................................................................................................................................................GTTTCAAAATGGGCTTGGTT.........................................................................................2011.0010000100
..........................................................................................................................................................................................................................................................................TGCCATTAGTCCCAGCGCCGAGAGAC................................................................2611.0011000000
...................................................................................................................................................AACCCACGAAAAGTGCTGATCAAGTGG......................................................................................................................................................................................2711.0010000100
..............................................................................................................................................................................................................................................................................ATTAGTCCCAGCGCCGAGA...................................................................1911.0010000100
................................................................................................................................................................................................GAATACTTTGAGCGCCTTGTCCAGAAC.........................................................................................................................................2711.0010000100
...............................................................................................................................................................................................TGAATACTTTGAGCGCCTTGTCCAGAAC.........................................................................................................................................2811.0010000100

Generated: 06/08/2015 at 03:05 PM