ID:

dpe_687

 Coordinate:

scaffold_11187:278-428 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-10.6 -10.3 -10.2 -9.9

Flybase annnotation

CDS [Dper\GL16694-cds]; exon [dper_GLEANR_18542:2]; intron [Dper\GL16694-in]

No Repeatable elements found

mature
  1. scaffold_32:688561-688585 +
  2. dpe_687  scaffold_11187:402-426 -
  3. scaffold_2360:4335-4359 +
star
  1. dpe_1246  scaffold_247:21775-21798 +
  2. dpe_687  scaffold_11187:371-394 -
  3. scaffold_2360:4367-4390 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TGCTACACAAATAGCTGGCCCAAACGCCAGTGGATTACTTCGAGCGCCTGGTTAACATATTTCTGCACGTGGTGATTCACATCATCAGCTTCTAAATGGGTCTGATGGCCATCAGTCCAACGTTGGAGAGTTCCCAAAGAGTAAGGATTTGGATTTGATTCCATTACCGACCACCACCACTAATGCCATCATCGCTTTTAGCTGATGCCATACAATGCTGATTTGGATGTCATTCTGAAGGTAATGAATGT
****************************************************.............................((.((((..(((....))).)))).))*********************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 M021
embryo
 V042
embryo
 V111
male body
....................................................TAACATATTTCTGCACGTGGTGATT.............................................................................................................................................................................. 25 0 3 12.67 38 37 0 1 0
....................................................TAACATATTTCTGCACGTGGTGAT............................................................................................................................................................................... 24 0 3 3.33 10 10 0 0 0
..................................................................................................................................................................................................................TACAATGCTGATTTGGATGTCATTC................ 25 0 4 3.00 12 12 0 0 0
....................................................................................TCAGCTTCTAAATGGGTCTGATGG............................................................................................................................................... 24 0 3 2.67 8 8 0 0 0
.....................................................AACATATTTCTGCACGTGGTGATT.............................................................................................................................................................................. 24 0 3 2.00 6 6 0 0 0
....................................................................................................................................................................TACCGACCACCACCACTAATGCCATCA............................................................ 27 0 2 2.00 4 4 0 0 0
.....................AAACGCCAGTGGATTACTTCGAGCGCCT.......................................................................................................................................................................................................... 28 0 2 2.00 4 0 4 0 0
....................................................................................TCAGCTTCTAAATGGGTCTGATGGC.............................................................................................................................................. 25 0 3 1.67 5 4 0 1 0
.....................................................................................CAGCTTCTAAATGGGTCTGATGG............................................................................................................................................... 23 0 3 1.67 5 4 0 1 0
....................................................................................TCAGCTTCTAAATGGGTCTGATGGCCA............................................................................................................................................ 27 0 3 1.67 5 5 0 0 0
....................................................................................................................................................................TACCGACCACCACCACTAATGCCAT.............................................................. 25 0 2 1.50 3 3 0 0 0
....................................................TAACATATGTCTGCACGTGGTGATT.............................................................................................................................................................................. 25 1 3 1.33 4 4 0 0 0
....................................................TAACATATTTCTGCACGTGGTGA................................................................................................................................................................................ 23 0 3 1.33 4 4 0 0 0
...................................................................................................................TCCAACGTTGGAGAGTTCCCAAAGAG.............................................................................................................. 26 0 3 1.33 4 4 0 0 0
..................................................................................................................................................................................................................TACAATGCTGATTTGGATGTCAT.................. 23 0 4 1.25 5 5 0 0 0
.......................................................................................................................................................................................................................TGCTGATTTGGATGTCATTCTGAAGG.......... 26 0 4 1.00 4 0 4 0 0
....................................................................................................................................................................TACCGACCACCACCACTAATGCCATCAT........................................................... 28 0 2 1.00 2 2 0 0 0
......................................................................................................................AACGTTGGAGAGTTCCCAAAGAG.............................................................................................................. 23 0 3 0.67 2 2 0 0 0
.............................................................................CACATCATCAGCTTCTAAATGGG....................................................................................................................................................... 23 0 3 0.67 2 2 0 0 0
...............TGGCCCAAACGCCAGTGGATTACTT................................................................................................................................................................................................................... 25 0 3 0.67 2 2 0 0 0
.....................................................................................CAGCTTCTAAATGGGTCTGATGGC.............................................................................................................................................. 24 0 3 0.67 2 2 0 0 0
....................................................TAACATATTTCTGCACGTGGTG................................................................................................................................................................................. 22 0 3 0.67 2 2 0 0 0
....................................................TAACATATTTCTGCACGTGGTGATTC............................................................................................................................................................................. 26 0 3 0.67 2 2 0 0 0
.....................................................AACATATTTCTGCACGTGGTGAT............................................................................................................................................................................... 23 0 3 0.67 2 2 0 0 0
..................................................................................................................................................................................................................TACAATGCTGATTTGGATGTCATTCT............... 26 0 4 0.50 2 2 0 0 0
........................CGCCAGTGGATTACTTCGAGCGCCTG......................................................................................................................................................................................................... 26 0 2 0.50 1 1 0 0 0
..........................CCAGTGGATTACTTCGAGCGCCTG......................................................................................................................................................................................................... 24 0 2 0.50 1 1 0 0 0
..........................CCAGTGGATTACTTCGAGCGCCTT......................................................................................................................................................................................................... 24 1 2 0.50 1 1 0 0 0
........................CGCCAGTGCATTACTTCGAGCGC............................................................................................................................................................................................................ 23 1 2 0.50 1 1 0 0 0
........................CGCCAGTGGATTACTTCGAGCGCCTGG........................................................................................................................................................................................................ 27 0 2 0.50 1 1 0 0 0
..........................CCAGTGGATTACTTCGAGCGCCT.......................................................................................................................................................................................................... 23 0 2 0.50 1 1 0 0 0
..........................CCAGTGGATTACTTCGAGCGCCTGGT....................................................................................................................................................................................................... 26 0 2 0.50 1 1 0 0 0
........................................................................................................................................AAGAGTAAGGATTTGGATTTGATTC.......................................................................................... 25 0 2 0.50 1 0 1 0 0
....................................................................................................................................................................TACCGACCACCACCACTAATGCCA............................................................... 24 0 2 0.50 1 1 0 0 0
..........................CCAGTGGATTACTTCGAGCGCC........................................................................................................................................................................................................... 22 0 2 0.50 1 0 1 0 0
....................................................................................................................................................................TACCGACCACCACCACTAATGCCATCATC.......................................................... 29 0 2 0.50 1 1 0 0 0
....................CAAACGCCAGTGGATTACTTCGAGCGC............................................................................................................................................................................................................ 27 0 2 0.50 1 1 0 0 0
....................................................................................................................................CCCAAAGAGTAAGGATTTGG................................................................................................... 20 0 2 0.50 1 1 0 0 0
.........................GCCAGTGGATTACTTCGAGCGCCT.......................................................................................................................................................................................................... 24 0 2 0.50 1 0 1 0 0
......................................................................................................................................................................................................TAGCTGATGCCATACAATGCTGATT............................ 25 0 4 0.50 2 2 0 0 0
..............................TGGATTACTTCGAGCGCCTG......................................................................................................................................................................................................... 20 0 2 0.50 1 1 0 0 0
..................................................................................................................................TTCCCAAAGAGTAAGGATTTG.................................................................................................... 21 0 2 0.50 1 1 0 0 0
..................................................................................................................................................................................................................TACAATGCTGATTTGGATGTCATT................. 24 0 4 0.50 2 2 0 0 0
.........................GCCAGTGGATTACTTCGAGCGCCTG......................................................................................................................................................................................................... 25 0 2 0.50 1 1 0 0 0
................................................................................................................................................................................................CGCTTTTAGCTGATGCCATACAATG.................................. 25 0 2 0.50 1 1 0 0 0
.....................................................................................................................................................................................GATACCATCATCGCTTTTAGCC................................................ 22 3 2 0.50 1 0 0 1 0
.....................AAACGCCAGTGGATTACTTCGAGCGA............................................................................................................................................................................................................ 26 1 3 0.33 1 1 0 0 0
....................................................................................TCAGCTTCTAAATGGGTCTGATGGCCAT........................................................................................................................................... 28 0 3 0.33 1 1 0 0 0
...........................................................TTTCTGCACGTGGTGATT.............................................................................................................................................................................. 18 0 3 0.33 1 1 0 0 0
..........................................................................................................GGCCATCAGTCCGACGTTGGAGAGT........................................................................................................................ 25 1 3 0.33 1 0 1 0 0
...........................................................................................CTAAATGGGTCTGATGGC.............................................................................................................................................. 18 0 3 0.33 1 1 0 0 0
...................................TACTTCGAGCGCCTGGTTA..................................................................................................................................................................................................... 19 0 3 0.33 1 1 0 0 0
...................................................................................ATCAGCTTCTAAATGGGTCTGATG................................................................................................................................................ 24 0 3 0.33 1 1 0 0 0
............................................................................TCACATCAACAGCTTCTAAATGG........................................................................................................................................................ 23 1 3 0.33 1 1 0 0 0
....................................................TAACATATTTCTGCACGTGG................................................................................................................................................................................... 20 0 3 0.33 1 0 0 1 0
...............................................................................................................TCAGTCCAACGTTGGAGAGTTCCCAA.................................................................................................................. 26 0 3 0.33 1 1 0 0 0
....................................................TAACATATATCTGCACGTGGTGATT.............................................................................................................................................................................. 25 1 3 0.33 1 1 0 0 0
............................................................................................TAAATGGGTCTGATGGCCATCAGTCC..................................................................................................................................... 26 0 3 0.33 1 1 0 0 0
...........................................................................................................................................................TGATTCCATTACCGACCACCACCA........................................................................ 24 0 3 0.33 1 1 0 0 0
....................................................................................................................CCAACGTTGGAGAGTTCCCAAAGAG.............................................................................................................. 25 0 3 0.33 1 1 0 0 0
..................................................................................................................GTCCAACGTTGGAGAGTTCCCAAAGAG.............................................................................................................. 27 0 3 0.33 1 1 0 0 0
............................................................................TCACATCATCAGCTTCTAAATGGGTC..................................................................................................................................................... 26 0 3 0.33 1 1 0 0 0
................................................................................................TGGGTCTGATGGCCATCAGTC...................................................................................................................................... 21 0 3 0.33 1 1 0 0 0
.............................................................................CACATCATCAGCTTCTAAATGGGTC..................................................................................................................................................... 25 0 3 0.33 1 1 0 0 0
...............TGGCCCAAGCGCCAGTGGATTACTT................................................................................................................................................................................................................... 25 1 3 0.33 1 1 0 0 0
.................................................................................TCATCAGCTTCTAAATGGGTCT.................................................................................................................................................... 22 0 3 0.33 1 1 0 0 0
...............................................................................................................TCAGTCCAACGTTGGAGAGA........................................................................................................................ 20 1 3 0.33 1 1 0 0 0
..........................................................................................TCTAAATGGGTCTGATGGCCATCAGTC...................................................................................................................................... 27 0 3 0.33 1 1 0 0 0
....................CAAACGCCAGTGGATTACTTCGA................................................................................................................................................................................................................ 23 0 3 0.33 1 1 0 0 0
......................................................................................................TGATGGCCATCAGTCCAACGTTGG............................................................................................................................. 24 0 3 0.33 1 1 0 0 0
..........................................................................................................GGCCATCATTCCAACGTTGGAGAGT........................................................................................................................ 25 1 3 0.33 1 1 0 0 0
....................................................TAACATATTTCTCCACGTGGTGATT.............................................................................................................................................................................. 25 1 3 0.33 1 1 0 0 0
...............................................................................................................TCAGTCCAACGTTGGAGAGTTCCCA................................................................................................................... 25 0 3 0.33 1 1 0 0 0
.....................................................AACATATTGCTGCACGTGGTGATT.............................................................................................................................................................................. 24 1 3 0.33 1 1 0 0 0
....................................................TAACATATGTCTGCACGTGGTGAT............................................................................................................................................................................... 24 1 3 0.33 1 1 0 0 0
........................CGCCAGTGGATTACTTCGAG............................................................................................................................................................................................................... 20 0 3 0.33 1 1 0 0 0
.............................................................................................................CATCAGTCCAACGTTGGAGAGTT....................................................................................................................... 23 0 3 0.33 1 1 0 0 0
....................CAAACGCCAGTGGATTACTTCGAGCG............................................................................................................................................................................................................. 26 0 3 0.33 1 1 0 0 0
.........................GCCAGTGGATTACTTCGAGC.............................................................................................................................................................................................................. 20 0 3 0.33 1 1 0 0 0
....................................................TAACATATTTCTGCGCGTGGTGAT............................................................................................................................................................................... 24 1 3 0.33 1 1 0 0 0
............................................................................................TAAATGGGTCTGATGGCCATCAGTC...................................................................................................................................... 25 0 3 0.33 1 1 0 0 0
.........................................................................................................TGGCCATCAGTCCAACGTTGGAGA.......................................................................................................................... 24 0 3 0.33 1 0 1 0 0
..........................CCAGTGGATTACTTCGAGCG............................................................................................................................................................................................................. 20 0 3 0.33 1 1 0 0 0
...............................................................................................................TCAGTCCAGCGTTGGAGAGTTCCCAA.................................................................................................................. 26 1 3 0.33 1 1 0 0 0
....................................................................................TCAGCTTCTAAATGGGTCTGATGGAA............................................................................................................................................. 26 2 3 0.33 1 1 0 0 0
..................................................................................................................................................................................................................TACAATGCTGATTTGGATGTCATTCTG.............. 27 0 4 0.25 1 1 0 0 0
................................................................................................................................................................................................................CATACAATGCTGATTTGGATGTCATTC................ 27 0 4 0.25 1 1 0 0 0
..................................................................................................................................................................................................................TACAATGCTGATTTGGATGTCA................... 22 0 4 0.25 1 1 0 0 0
..................................................................................................................................................................................................................TACAATGCTGATTTGGATGTCATTCTGA............. 28 0 4 0.25 1 1 0 0 0
..............................................................................................................................................................................................................................TTGGATGTCATTCTGAAGG.......... 19 0 4 0.25 1 1 0 0 0
...................................................................................................................................................................................................................ACAATGCTGATTTGGATGTCATTCTGA............. 27 0 4 0.25 1 1 0 0 0
.....................................................................................................................................................................................................TTAGCTGATGCCATACAATGCTGATT............................ 26 0 4 0.25 1 1 0 0 0
..........................................................................................................................................................................................................................TGATTTGGATGTCATTCTGAAGGTAAA...... 27 1 4 0.25 1 1 0 0 0
..................................................................................................................................................................................................................TACAATGCTGATTTGGATG...................... 19 0 4 0.25 1 1 0 0 0
......................................................................................................................................................................................................GAGCTGATGCCATACAATGCTGATT............................ 25 1 4 0.25 1 1 0 0 0
..............................................................................................................................................................................................................................TTGGATGTCATTCTGAAGGTAATGAA... 26 0 4 0.25 1 1 0 0 0
.......................................................................................................................................................................................................................TGCTGATTTGGATGTCATTCTGAAG........... 25 0 4 0.25 1 1 0 0 0
....................................................................................................................................................................................................TTTAGCTGATGCCATACAATGCTGA.............................. 25 0 4 0.25 1 1 0 0 0
..................................................................................................................................................................................................................TACAATGCTGATTTGGATTTCATTC................ 25 1 4 0.25 1 1 0 0 0
.....................................................................................................................................................................................................TTAGCTGATGCCATACAATGCTGAT............................. 25 0 4 0.25 1 1 0 0 0
.....................................................................................................................................................................................................TTAGCTGATGCCATACAATGCTGATTT........................... 27 0 4 0.25 1 1 0 0 0
......................................................................................................................................................................................................................ATGCTGATTTGGATGTCATTCTGAAGG.......... 27 0 4 0.25 1 0 1 0 0
...................................................................................................................TCCAACGTTGGAGAGTTCCCAG.................................................................................................................. 22 1 4 0.25 1 1 0 0 0
........................................................................................................................................................................................................................GCTGATTTGGATGTCATTCTGAAGG.......... 25 0 4 0.25 1 1 0 0 0
..................................................................................................................................................................................................................TACAAAGCTGATATGGAT....................... 18 2 10 0.20 2 0 2 0 0
...............................................................................................................TCAGTACAAAGGTGGAGAG......................................................................................................................... 19 3 20 0.05 1 0 0 0 1

Anti-sense strand reads

ACGATGTGTTTATCGACCGGGTTTGCGGTCACCTAATGAAGCTCGCGGACCAATTGTATAAAGACGTGCACCACTAAGTGTAGTAGTCGAAGATTTACCCAGACTACCGGTAGTCAGGTTGCAACCTCTCAAGGGTTTCTCATTCCTAAACCTAAACTAAGGTAATGGCTGGTGGTGGTGATTACGGTAGTAGCGAAAATCGACTACGGTATGTTACGACTAAACCTACAGTAAGACTTCCATTACTTACA
***********************************************************************************************************************************************.............................((.((((..(((....))).)))).))**************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 V057
head
 V042
embryo
.......................................................................................................................................................CTAAACTAAGGTAATGGCTGGTG............................................................................. 23 0 3 0.67 2 2 0 0
.................................................................................................................................CAAGGGTTTCTCATTCCTAAACCTAAACT............................................................................................. 29 0 2 0.50 1 1 0 0
..........TATCGACCGGGTTTGCGGTCACCTAAT...................................................................................................................................................................................................................... 27 0 2 0.50 1 1 0 0
.....................................GAAGCTCGCGGACCAATTGTATAAA............................................................................................................................................................................................. 25 0 3 0.33 1 1 0 0
......................................AAGCTCGCGGACCAATTGTATAAA............................................................................................................................................................................................. 24 0 3 0.33 1 1 0 0
........................................GCTCGCGGACCAATTGTATAAA............................................................................................................................................................................................. 22 0 3 0.33 1 1 0 0
.........................................CTCGCGGACCAATTGTATAAAGACG......................................................................................................................................................................................... 25 0 3 0.33 1 1 0 0
...........................................................................................................CGGTAGTCAGGTTGCAACCTC........................................................................................................................... 21 0 3 0.33 1 1 0 0
........................................................................................................................................................TAAACTAAGGTAATGGCTGGTG............................................................................. 22 0 3 0.33 1 1 0 0
...............CCCGGGTTTGCGGTCACCTAAT...................................................................................................................................................................................................................... 22 1 3 0.33 1 1 0 0
..................................................................................................................................................................................................GAAAATCGACTACGGTATGTTACGAC............................... 26 0 4 0.25 1 1 0 0
........................................................................................................................................................................................................CGACTACGGTATGTTACGA................................ 19 0 4 0.25 1 1 0 0
....................................................................................................................................................................................................................GTTACGACTAAACCTACAGTAAGACT............. 26 0 4 0.25 1 1 0 0
....................................................................................AGTCGAAGGTTTTCCCAGAAT.................................................................................................................................................. 21 3 6 0.17 1 0 1 0
...................................................................................TCGTCGAAAGTTTACCCAGACT.................................................................................................................................................. 22 3 6 0.17 1 0 1 0
...................................................................................TAGTCGAAGGTTTTCCTAGACT.................................................................................................................................................. 22 3 6 0.17 1 0 0 1
...................................................................................TAGTCGAAGGTTTTACCAGACT.................................................................................................................................................. 22 3 6 0.17 1 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_11187:228-478 - dpe_687 TGCTACACAAATAGCTGGCCCAAACGCCAGTGGATTA---------CTTCGAGCGCCTGGTTAACATATTTCTGCACGTGGTGATTCACATCATCAGCTTCTAAATGGGTCTGATGGCCATCAGTCCAACGTTGGAGAGTTCCCAAAGAGTAAGGATTTGGATTTGATTCCATTACCGACCACCACCACTAATGCCATCATCGCTTTTAGCTGATGCCATACAATGCTGATTTGGATGTCATTCTGAAGGTAATGAATG------------------------------------------------------------------------------------T
droWil2 scf2_1100000004921:1026874-1026875 + AA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6680:6804722-6804861 + ATGGTTCTT---------------TTCTGCTGGACCAAGACAGGCACTTGGGTTGCTCCGTTCGC------------------------------AATTATGGCATAGATTTAATGGCTGCCCAGGCGGCCTTTGATAATCTACGCAAAGTGGAGA----------------------------------------------------------------------------ATCAAAGCATCAAGCAGGTGGTACGTGCA-----------------------------------------------------------------------------------
droBia1 scf7180000300910:1419390-1419526 + ATGGTTCTT---------------TCCTCTTGGATCACGACCGGCACTTTGGCTGCTCCGTTCGG------------------------------AACCATGGATTGGATCTCAAGGCAGCTCAACTTGCATTTGACAACCTGCGCGTGGTGGAGA----------------------------------------------------------------------------ATGAAAGCATTAAGCAAGTTGTAGGT--------------------------------------------------------------------------------------
droTak1 scf7180000414671:299333-299553 + ATGGTTCCT---------------TCCTCTTGGATCACGAAAGACACTTTGGCTGCTCTGTTCGT------------------------------AATCATGGTTTGGATCTCGAGGCGGCTCAATTGGCATTTGACAATCTGCGCGTTGTGGAGA----------------------------------------------------------------------------ATGAGTCCATTAAGCAGGTGGTAAGTTATCTTTA--TAAAAAGCCTCTTAAGAATCTCTCTAATCTATTTATTTCCCCAGATCTGGGACAATATAACCAAGGAGCTAGTAGG
droEug1 scf7180000409007:138888-139108 + ATGGGTCCT---------------TCCTGTTGGATCACGATAGACACTTCGGTTGCTCTGTTCGG------------------------------AACCATGGACTGGATCTCGAGGCAGCTCAATTAGCATTCGACAATCTGCGCGCTGTGGAAA----------------------------------------------------------------------------ATGAAAGCATCAAACAGGTGGTAAGTGTTCACTAATCAAAAATACAACCAACATTCCTGATAATTG--TGCTTTGTTTAGATCTGGGACAATCTAACTAAGGAGCTAATTGG
dm3 chr3L:1315810-1315946 + ATGGTTCCT---------------TTCTGCTGGATCACGACCGACACTTTGGATGCTCGGTTCGC------------------------------AACCATGGACTGGATCTGAAAGCAGCCCAACTAGCATTCGACAATCTGCGCGCTGTGGAAA----------------------------------------------------------------------------ATGAAAGCATTAGGCAGGTGGTAAGT--------------------------------------------------------------------------------------
droSim2 3l:1239868-1240004 + ATGGTTCCT---------------TTCTGCTAGATCACGATAGACACTTTGGATGCTCGGTTCGC------------------------------AACCATGGTCTGGATCTTAAAGCAGCCCAACTGGCATTCGACAATCTGCGCGTTGTGGAAA----------------------------------------------------------------------------ATGAAAGCATTAGGCAGGTGGTAAGT--------------------------------------------------------------------------------------
droSec2 scaffold_2:1358564-1358700 + ATGGTTCCT---------------TTCTGCTGGATCACGATAGACACTTTGGATGCTCGGTTCGC------------------------------AACCATGGACTGGATCTTAAAGCAGCCCAACTGGCATTCGACAATCTGCGCGTTGTGGAAA----------------------------------------------------------------------------ATGAAAGCATTAGGCAGGTGGTAAGT--------------------------------------------------------------------------------------
droYak3 3L:1274566-1274703 + ATGGTTCCT---------------TCCTGTTGGATCACGACAGACACTTTGGTTGCTCGGTTCGC------------------------------AACCACGGATTGGATCTCAACGCAGCCCAATTGGCATTCGACAATCTGCGCGTTGTGGAAA----------------------------------------------------------------------------ACGAAAGCATTAAGCAGGTGGTAAGTA-------------------------------------------------------------------------------------
droEre2 scaffold_4784:1298653-1298789 + ATGGTTCCT---------------TCCTATTGGATCACGACAGACACTTTGGTTGCTCGGCACGC------------------------------AACCATGGATTGGACCTCAAGGCAGCCCAATTGGCATTCGACAATCTGCGCGTTGTGGAAA----------------------------------------------------------------------------ACGAAAGCATTAAGCAGGTGGTAAGT--------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
TGCTACACAAATAGCTGGCCCAAACGCCAGTGGATTA---------CTTCGAGCGCCTGGTTAACATATTTCTGCACGTGGTGATTCACATCATCAGCTTCTAAATGGGTCTGATGGCCATCAGTCCAACGTTGGAGAGTTCCCAAAGAGTAAGGATTTGGATTTGATTCCATTACCGACCACCACCACTAATGCCATCATCGCTTTTAGCTGATGCCATACAATGCTGATTTGGATGTCATTCTGAAGGTAATGAATG------------------------------------------------------------------------------------TSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................................................TAACATATTTCTGCACGTGGTGATT..................................................................................................................................................................................................................................................................25312.67380371000
.............................................................TAACATATTTCTGCACGTGGTGAT...................................................................................................................................................................................................................................................................2433.33100100000
...........................................................................................................................................................................................................................TACAATGCTGATTTGGATGTCATTC....................................................................................................2543.00120120000
.............................................................................................TCAGCTTCTAAATGGGTCTGATGG...................................................................................................................................................................................................................................2432.678080000
..............................................................AACATATTTCTGCACGTGGTGATT..................................................................................................................................................................................................................................................................2432.006060000
.............................................................................................................................................................................TACCGACCACCACCACTAATGCCATCA................................................................................................................................................2722.004040000
.....................AAACGCCAGTGGATTA---------CTTCGAGCGCCT..............................................................................................................................................................................................................................................................................................2822.004400000
.............................................................................................TCAGCTTCTAAATGGGTCTGATGGC..................................................................................................................................................................................................................................2531.675041000
..............................................................................................CAGCTTCTAAATGGGTCTGATGG...................................................................................................................................................................................................................................2331.675041000
.............................................................................................TCAGCTTCTAAATGGGTCTGATGGCCA................................................................................................................................................................................................................................2731.675050000
.............................................................................................................................................................................TACCGACCACCACCACTAATGCCAT..................................................................................................................................................2521.503030000
.............................................................TAACATATTTCTGCACGTGGTGA....................................................................................................................................................................................................................................................................2331.334040000
............................................................................................................................TCCAACGTTGGAGAGTTCCCAAAGAG..................................................................................................................................................................................................2631.334040000
...........................................................................................................................................................................................................................TACAATGCTGATTTGGATGTCAT......................................................................................................2341.255050000
................................................................................................................................................................................................................................TGCTGATTTGGATGTCATTCTGAAGG..............................................................................................2641.004400000
.............................................................................................................................................................................TACCGACCACCACCACTAATGCCATCAT...............................................................................................................................................2821.002020000
...............................................................................................................................AACGTTGGAGAGTTCCCAAAGAG..................................................................................................................................................................................................2330.672020000
......................................................................................CACATCATCAGCTTCTAAATGGG...........................................................................................................................................................................................................................................2330.672020000
...............TGGCCCAAACGCCAGTGGATTA---------CTT.......................................................................................................................................................................................................................................................................................................2530.672020000
..............................................................................................CAGCTTCTAAATGGGTCTGATGGC..................................................................................................................................................................................................................................2430.672020000
.............................................................TAACATATTTCTGCACGTGGTG.....................................................................................................................................................................................................................................................................2230.672020000
.............................................................TAACATATTTCTGCACGTGGTGATTC.................................................................................................................................................................................................................................................................2630.672020000
..............................................................AACATATTTCTGCACGTGGTGAT...................................................................................................................................................................................................................................................................2330.672020000
...........................................................................................................................................................................................................................TACAATGCTGATTTGGATGTCATTCT...................................................................................................2640.502020000
........................CGCCAGTGGATTA---------CTTCGAGCGCCTG.............................................................................................................................................................................................................................................................................................2620.501010000
..........................CCAGTGGATTA---------CTTCGAGCGCCTG.............................................................................................................................................................................................................................................................................................2420.501010000
..........................CCAGTGGATTA---------CTTCGAGCGCCTT.............................................................................................................................................................................................................................................................................................2420.501010000
........................CGCCAGTGGATTA---------CTTCGAGCGCCTGG............................................................................................................................................................................................................................................................................................2720.501010000
..........................CCAGTGGATTA---------CTTCGAGCGCCT..............................................................................................................................................................................................................................................................................................2320.501010000
..........................CCAGTGGATTA---------CTTCGAGCGCCTGGT...........................................................................................................................................................................................................................................................................................2620.501010000
.................................................................................................................................................AAGAGTAAGGATTTGGATTTGATTC..............................................................................................................................................................................2520.501100000
.............................................................................................................................................................................TACCGACCACCACCACTAATGCCA...................................................................................................................................................2420.501010000
..........................CCAGTGGATTA---------CTTCGAGCGCC...............................................................................................................................................................................................................................................................................................2220.501100000
.............................................................................................................................................................................TACCGACCACCACCACTAATGCCATCATC..............................................................................................................................................2920.501010000
....................CAAACGCCAGTGGATTA---------CTTCGAGCGC................................................................................................................................................................................................................................................................................................2720.501010000
.............................................................................................................................................CCCAAAGAGTAAGGATTTGG.......................................................................................................................................................................................2020.501010000
.........................GCCAGTGGATTA---------CTTCGAGCGCCT..............................................................................................................................................................................................................................................................................................2420.501100000
...............................................................................................................................................................................................................TAGCTGATGCCATACAATGCTGATT................................................................................................................2540.502020000
..............................TGGATTA---------CTTCGAGCGCCTG.............................................................................................................................................................................................................................................................................................2020.501010000
...........................................................................................................................................TTCCCAAAGAGTAAGGATTTG........................................................................................................................................................................................2120.501010000
...........................................................................................................................................................................................................................TACAATGCTGATTTGGATGTCATT.....................................................................................................2440.502020000
.........................GCCAGTGGATTA---------CTTCGAGCGCCTG.............................................................................................................................................................................................................................................................................................2520.501010000
.........................................................................................................................................................................................................CGCTTTTAGCTGATGCCATACAATG......................................................................................................................2520.501010000
.....................AAACGCCAGTGGATTA---------CTTCGAGCGA................................................................................................................................................................................................................................................................................................2630.331010000
.............................................................................................TCAGCTTCTAAATGGGTCTGATGGCCAT...............................................................................................................................................................................................................................2830.331010000
....................................................................TTTCTGCACGTGGTGATT..................................................................................................................................................................................................................................................................1830.331010000
....................................................................................................CTAAATGGGTCTGATGGC..................................................................................................................................................................................................................................1830.331010000
...................................TA---------CTTCGAGCGCCTGGTTA.........................................................................................................................................................................................................................................................................................1930.331010000
............................................................................................ATCAGCTTCTAAATGGGTCTGATG....................................................................................................................................................................................................................................2430.331010000
.............................................................TAACATATTTCTGCACGTGG.......................................................................................................................................................................................................................................................................2030.331001000
........................................................................................................................TCAGTCCAACGTTGGAGAGTTCCCAA......................................................................................................................................................................................................2630.331010000
.....................................................................................................TAAATGGGTCTGATGGCCATCAGTCC.........................................................................................................................................................................................................................2630.331010000
....................................................................................................................................................................TGATTCCATTACCGACCACCACCA............................................................................................................................................................2430.331010000
.............................................................................................................................CCAACGTTGGAGAGTTCCCAAAGAG..................................................................................................................................................................................................2530.331010000
...........................................................................................................................GTCCAACGTTGGAGAGTTCCCAAAGAG..................................................................................................................................................................................................2730.331010000
.....................................................................................TCACATCATCAGCTTCTAAATGGGTC.........................................................................................................................................................................................................................................2630.331010000
.........................................................................................................TGGGTCTGATGGCCATCAGTC..........................................................................................................................................................................................................................2130.331010000
......................................................................................CACATCATCAGCTTCTAAATGGGTC.........................................................................................................................................................................................................................................2530.331010000
..........................................................................................TCATCAGCTTCTAAATGGGTCT........................................................................................................................................................................................................................................2230.331010000
........................................................................................................................TCAGTCCAACGTTGGAGAGA............................................................................................................................................................................................................2030.331010000
...................................................................................................TCTAAATGGGTCTGATGGCCATCAGTC..........................................................................................................................................................................................................................2730.331010000
....................CAAACGCCAGTGGATTA---------CTTCGA....................................................................................................................................................................................................................................................................................................2330.331010000
...............................................................................................................TGATGGCCATCAGTCCAACGTTGG.................................................................................................................................................................................................................2430.331010000
........................................................................................................................TCAGTCCAACGTTGGAGAGTTCCCA.......................................................................................................................................................................................................2530.331010000
........................CGCCAGTGGATTA---------CTTCGAG...................................................................................................................................................................................................................................................................................................2030.331010000
......................................................................................................................CATCAGTCCAACGTTGGAGAGTT...........................................................................................................................................................................................................2330.331010000
....................CAAACGCCAGTGGATTA---------CTTCGAGCG.................................................................................................................................................................................................................................................................................................2630.331010000
.........................GCCAGTGGATTA---------CTTCGAGC..................................................................................................................................................................................................................................................................................................2030.331010000
.....................................................................................................TAAATGGGTCTGATGGCCATCAGTC..........................................................................................................................................................................................................................2530.331010000
..................................................................................................................TGGCCATCAGTCCAACGTTGGAGA..............................................................................................................................................................................................................2430.331100000
..........................CCAGTGGATTA---------CTTCGAGCG.................................................................................................................................................................................................................................................................................................2030.331010000
.............................................................................................TCAGCTTCTAAATGGGTCTGATGGAA.................................................................................................................................................................................................................................2630.331010000
...........................................................................................................................................................................................................................TACAATGCTGATTTGGATGTCATTCTG..................................................................................................2740.251010000
.........................................................................................................................................................................................................................CATACAATGCTGATTTGGATGTCATTC....................................................................................................2740.251010000
...........................................................................................................................................................................................................................TACAATGCTGATTTGGATGTCA.......................................................................................................2240.251010000
...........................................................................................................................................................................................................................TACAATGCTGATTTGGATGTCATTCTGA.................................................................................................2840.251010000
.......................................................................................................................................................................................................................................TTGGATGTCATTCTGAAGG..............................................................................................1940.251010000
............................................................................................................................................................................................................................ACAATGCTGATTTGGATGTCATTCTGA.................................................................................................2740.251010000
..............................................................................................................................................................................................................TTAGCTGATGCCATACAATGCTGATT................................................................................................................2640.251010000
...................................................................................................................................................................................................................................TGATTTGGATGTCATTCTGAAGGTAAA..........................................................................................2740.251010000
...........................................................................................................................................................................................................................TACAATGCTGATTTGGATG..........................................................................................................1940.251010000
.......................................................................................................................................................................................................................................TTGGATGTCATTCTGAAGGTAATGAA.......................................................................................2640.251010000
................................................................................................................................................................................................................................TGCTGATTTGGATGTCATTCTGAAG...............................................................................................2540.251010000
.............................................................................................................................................................................................................TTTAGCTGATGCCATACAATGCTGA..................................................................................................................2540.251010000
..............................................................................................................................................................................................................TTAGCTGATGCCATACAATGCTGAT.................................................................................................................2540.251010000
..............................................................................................................................................................................................................TTAGCTGATGCCATACAATGCTGATTT...............................................................................................................2740.251010000
...............................................................................................................................................................................................................................ATGCTGATTTGGATGTCATTCTGAAGG..............................................................................................2740.251100000
............................................................................................................................TCCAACGTTGGAGAGTTCCCAG......................................................................................................................................................................................................2240.251010000
.................................................................................................................................................................................................................................GCTGATTTGGATGTCATTCTGAAGG..............................................................................................2540.251010000
droWil2
AA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droMoj3
ATGGTTCTT---------------TTCTGCTGGACCAAGACAGGCACTTGGGTTGCTCCGTTCGC------------------------------AATTATGGCATAGATTTAATGGCTGCCCAGGCGGCCTTTGATAATCTACGCAAAGTGGAGA----------------------------------------------------------------------------ATCAAAGCATCAAGCAGGTGGTACGTGCA-----------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................................................CGC------------------------------AATTATGGCATAGATTTAATG....................................................................................................................................................................................................................................2411.001100000
..........................................................................................................AGATTTAATGGCTGCCCAGGCGGC......................................................................................................................................................................................................................2411.001100000
...........................................................................................................GATTTAATGGCTGCCCAGGCGGC......................................................................................................................................................................................................................2311.001100000
droBia1
ATGGTTCTT---------------TCCTCTTGGATCACGACCGGCACTTTGGCTGCTCCGTTCGG------------------------------AACCATGGATTGGATCTCAAGGCAGCTCAACTTGCATTTGACAACCTGCGCGTGGTGGAGA----------------------------------------------------------------------------ATGAAAGCATTAAGCAAGTTGTAGGT--------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
ATGGTTCCT---------------TCCTCTTGGATCACGAAAGACACTTTGGCTGCTCTGTTCGT------------------------------AATCATGGTTTGGATCTCGAGGCGGCTCAATTGGCATTTGACAATCTGCGCGTTGTGGAGA----------------------------------------------------------------------------ATGAGTCCATTAAGCAGGTGGTAAGTTATCTTTA--TAAAAAGCCTCTTAAGAATCTCTCTAATCTATTTATTTCCCCAGATCTGGGACAATATAACCAAGGAGCTAGTAGGSizeHit CountTotal NormTotal
No Reads
droEug1
ATGGGTCCT---------------TCCTGTTGGATCACGATAGACACTTCGGTTGCTCTGTTCGG------------------------------AACCATGGACTGGATCTCGAGGCAGCTCAATTAGCATTCGACAATCTGCGCGCTGTGGAAA----------------------------------------------------------------------------ATGAAAGCATCAAACAGGTGGTAAGTGTTCACTAATCAAAAATACAACCAACATTCCTGATAATTG--TGCTTTGTTTAGATCTGGGACAATCTAACTAAGGAGCTAATTGGSizeHit CountTotal NormTotal
No Reads
dm3
ATGGTTCCT---------------TTCTGCTGGATCACGACCGACACTTTGGATGCTCGGTTCGC------------------------------AACCATGGACTGGATCTGAAAGCAGCCCAACTAGCATTCGACAATCTGCGCGCTGTGGAAA----------------------------------------------------------------------------ATGAAAGCATTAGGCAGGTGGTAAGT--------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................................................................................ACCATGGACTGGATCTGAAAGCAGCCC.............................................................................................................................................................................................................................2716.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................GACTGGATCTGAAAGCAGCCCAACTAGC......................................................................................................................................................................................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012000000000000000000000000000000000
......................................................................................................GACTGGATCTGAAAGCAGCCC.............................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000
...................................................GATGCTCGGTTCGC------------------------------AACCATGGAC...............................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................CATGGACTGGATCTGAAAGC..................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................CGACAATCTGCGCGCTGTGGAAA----------------------------------------------------------------------------ATG.............................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................CATGGACTGGATCTGAAAG...................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
..............................................................CGC------------------------------AACCATGGACTGGATCTGAAAGCAGC...............................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................TGGATCTGAAAGCAGCCCAACTAGCA.....................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................ACCATGGACTGGATCTGAAAGCAG................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................TGGATCTGAAAGCAGCCCAACTAGCAA....................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................A----------------------------------------------------------------------------ATGAAAGCATTAGGCAGGTG............................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................CACTTTGGATGCTCGGTTCGC------------------------------A........................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..........................................GACACTTTGGATGCTCGGTTCG........................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................ATGGACTGGATCTGAAAGC..................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................GACACTTTGGATGCTCGGTTCGC------------------------------.........................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...................................................................................................................................TTCGACAATCTGCGCGCTGT.................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TGGTTCCT---------------TTCTGCTGGATCACGACCGA............................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................ATGCTCGGTTCGC------------------------------AACCATGGACT..............................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....TTCCT---------------TTCTGCTGGATCACGACCG.............................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................CATGGACTGGATCTGAAAGCAGCC..............................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..........................................................................................................................................ATCTGCGCGCTGTGGAAA----------------------------------------------------------------------------ATGAAAGC........................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................AACCATGGACTGGATCTGAAAGCAGC...............................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...................................................................................................................AGCAGCCCAACTAGCATTCG.................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................ACCATGGACTGGATCTGAAAGCAGCCT.............................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................TCTGCGCGCTGTGGAAA----------------------------------------------------------------------------ATGAAAGCA.......................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................ACCATGGACTGGATCTGAAAGCAGCC..............................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................ACTTTGGATGCTCGGTTCGC------------------------------A........................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
ATGGTTCCT---------------TTCTGCTGGAT.....................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................TCACGACCGACACTTTGGATGCTCG.............................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................GACAATCTGCGCGCTGTGGAAA----------------------------------------------------------------------------................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
....................................ACGACCGACACTTTGGATGC................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................ACTTTGGATGCTCGGTTCGC------------------------------AACC.....................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................CACTTTGGATGCTCGGTTCGC------------------------------AACCATG..................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................ATGGACTGGATCTGAAAGCAGCCCA............................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................TGCTCGGTTCGC------------------------------AACCATGGACTGGAT..........................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................CTGGATCTGAAAGCAGCCCAACTAGC......................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
..................................................................................................................................................GCTGTGGAAA----------------------------------------------------------------------------ATGAAAGCATTAGGCA................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................GACACTTTGGATGCTCGGTT..........................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................ATCTGCGCGCTGTGGAAA----------------------------------------------------------------------------ATGA............................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................CTGAAAGCAGCCCAACTAG.......................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.................................................................................................CCATGGACTGGATCTGAAAGCAGCC..............................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
ATGGTTCCT---------------TTCTGCTGGATCACG.................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................TTTGGATGCTCGGTTCGC------------------------------AACC.....................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................ACCATGGACTGGATCTGGT.....................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..GGTTCCT---------------TTCTGCTGGC......................................................................................................................................................................................................................................................................................................................1740.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
ATGGTTCCT---------------TTCTGCTAGATCACGATAGACACTTTGGATGCTCGGTTCGC------------------------------AACCATGGTCTGGATCTTAAAGCAGCCCAACTGGCATTCGACAATCTGCGCGTTGTGGAAA----------------------------------------------------------------------------ATGAAAGCATTAGGCAGGTGGTAAGT--------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....TCCT---------------TTCTGCTAGATCACGATAGAC...........................................................................................................................................................................................................................................................................................................2512.00200200000000000000
.................................................................................................................................................CGTTGTGGAAA----------------------------------------------------------------------------ATGAAAGCATTAGGC.................................................................................................2611.00100000000100000000
.......................................ATAGACACTTTGGATGCTCGGTTC.........................................................................................................................................................................................................................................................................................2411.00101000000000000000
...............................................................................................................................................CGCGTTGTGGAAA----------------------------------------------------------------------------ATGAAAGCATTAA...................................................................................................2611.00100000000000001000
...................................CACGATAGACACTTTGGATGCTC..............................................................................................................................................................................................................................................................................................2311.00101000000000000000
...................................................................................................................................................TTGTGGAAA----------------------------------------------------------------------------ATGAAAGCATTAGGCA................................................................................................2511.00100000000000001000
........................................TAGACACTTTGGATGCTCGGTTCGC------------------------------.........................................................................................................................................................................................................................................................2511.00100000010000000000
....................................................................................................................................................TGTGGAAA----------------------------------------------------------------------------ATGAAAGCATTAGGCAA...............................................................................................2511.00100000000000001000
..................................TCACGATAGACACTTTGGATGCTCG.............................................................................................................................................................................................................................................................................................2511.00101000000000000000
droSec2
ATGGTTCCT---------------TTCTGCTGGATCACGATAGACACTTTGGATGCTCGGTTCGC------------------------------AACCATGGACTGGATCTTAAAGCAGCCCAACTGGCATTCGACAATCTGCGCGTTGTGGAAA----------------------------------------------------------------------------ATGAAAGCATTAGGCAGGTGGTAAGT--------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................................................................................................TCTTAAAGCAGCCCAACTGGCATTCG.................................................................................................................................................................................................................2611.0011000
................................GATCACGATAGACACTTTGGATG.................................................................................................................................................................................................................................................................................................2311.0010010
...................................................................................................ATGGACTGGATCTTAAAGC..................................................................................................................................................................................................................................1911.0010010
..................................................................................................................................................GTTGTGGAAA----------------------------------------------------------------------------ATGAAAGCATTAGGCAG...............................................................................................2711.0010100
droYak3
ATGGTTCCT---------------TCCTGTTGGATCACGACAGACACTTTGGTTGCTCGGTTCGC------------------------------AACCACGGATTGGATCTCAACGCAGCCCAATTGGCATTCGACAATCTGCGCGTTGTGGAAA----------------------------------------------------------------------------ACGAAAGCATTAAGCAGGTGGTAAGTA-------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................................GTTGCTCGGTTCGC------------------------------AACCACGGATT..............................................................................................................................................................................................................................................25123.0023000000000023
...................................................GTTGCTCGGTTCGC------------------------------AACCACGGATG..............................................................................................................................................................................................................................................2511.00100000000001
.....................................................TGCTCGGTTCGC------------------------------AACCACGGATT..............................................................................................................................................................................................................................................2311.00101000000000
droEre2
ATGGTTCCT---------------TCCTATTGGATCACGACAGACACTTTGGTTGCTCGGCACGC------------------------------AACCATGGATTGGACCTCAAGGCAGCCCAATTGGCATTCGACAATCTGCGCGTTGTGGAAA----------------------------------------------------------------------------ACGAAAGCATTAAGCAGGTGGTAAGT--------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........................................................................................................................................AATCTGCGCGTTGTGGAAA----------------------------------------------------------------------------ACGA............................................................................................................2311.0010000100
...............................................................................................................................GGCATTCGACAATCTGCGCGTTGTGGA..............................................................................................................................................................................................2711.0010000100
.......................................................................................................................................................GGAAA----------------------------------------------------------------------------ACGAAAGCATTAAGCAGGT.............................................................................................2411.0011000000

Generated: 06/08/2015 at 03:04 PM