dpe_684

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------########################-------------------------- TGGCTACGCAGCGCCCGACGTCACGCTCAGACTGATTTTCTGTCTCTCTCGCACGCACTCTTTGTCGTGTCGTTTAATATTAGCGGCGTCTGCCGAAGGAGAGCCATACTGCCTTAGTATCGGGTATAACTGTAGAGTTGCGGTGTCCGCAGCAACTCACAACGTTCCCCCTCGTTTTGTTTTTAATTTCAATCCCTTCAGTTGCTTGGCTCGCCGGAGCTTTAAAATTCCTGATATTACATTAAAACCGC *************************************************************************........((((....))))........((((((((...)))))).)).......(((.(((((((.((....)).)))))))))).***************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M042 female body	M021 embryo
...........................................CTCTCTCGCACGCACTCTTTGTC.........................................................................................................................................................................................	23	0	20	0.25	5	0	5
........................................................................................................................................................................................................GTTGCTTGGCTCGCCGGAGT...............................	20	1	7	0.14	1	1	0
..........................................................................................................................................TGCGGTGTCCGCAGCAACTCACAA.........................................................................................	24	0	20	0.10	2	2	0
.............................GACTGATTTTCTGTCTCTCTCG........................................................................................................................................................................................................	22	0	20	0.05	1	1	0
...........................................................................AATATTAGCGGCGTCTGC..............................................................................................................................................................	18	0	20	0.05	1	1	0
.....................................................................................................................TATCGGGTATAACTGTAGAGTTGCGG............................................................................................................	26	0	20	0.05	1	1	0
............................AGACTGATTTTCTGTCTCTCT..........................................................................................................................................................................................................	21	0	20	0.05	1	1	0

ACCGATGCGTCGCGGGCTGCAGTGCGAGTCTGACTAAAAGACAGAGAGAGCGTGCGTGAGAAACAGCACAGCAAATTATAATCGCCGCAGACGGCTTCCTCTCGGTATGACGGAATCATAGCCCATATTGACATCTCAACGCCACAGGCGTCGTTGAGTGTTGCAAGGGGGAGCAAAACAAAAATTAAAGTTAGGGAAGTCAACGAACCGAGCGGCCTCGAAATTTTAAGGACTATAATGTAATTTTGGCG ***************************************************************************************........((((....))))........((((((((...)))))).)).......(((.(((((((.((....)).)))))))))).*************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M042 female body	M021 embryo
..........................................................................................ACGGCTTCCTCTCGGTATGACG...........................................................................................................................................	22	0	2	0.50	1	1	0
............................................................................................GGCTTCCTCTCGGTATGAC............................................................................................................................................	19	0	20	0.15	3	3	0
.................................................................................................................................GACATCTCAACGCCACAGGCGTCGT.................................................................................................	25	0	20	0.15	3	3	0
....................................................................................CCGCAGACGGCTTCCTCTCG...................................................................................................................................................	20	0	20	0.10	2	2	0
...............................................................................................................................................ACAGGCGTCGTTGAGTGTTGCAA.....................................................................................	23	0	20	0.10	2	2	0
....................................................................................................................................................................AAGGGGGAGCAAAACAAAAAT..................................................................	21	0	10	0.10	1	1	0
.......................................................................................................................................................................GGTGAGCAAAACAAAAAT..................................................................	18	1	12	0.08	1	1	0
.......................................................................................CAGACGGCTTCCTCTCGGTATGAC............................................................................................................................................	24	0	20	0.05	1	1	0
...........................................................................................................................CATATTGACATCTCAACGCCACAGGC......................................................................................................	26	0	20	0.05	1	0	1

Species	Coordinate	ID	Alignment
droPer2	scaffold_111:109194-109444 +	dpe_684	TGGCTACG-CAGCGCCC-GACGTCACGCTC--------AG------ACTGATTTTCTGTCTCTCTCGCACGCACTCTTTGTCGTGTCGTTTAATATTAGCGGCGTCTGCCGAAGGAGAGCCATACTGCCTTAGTATCGGGTATAACTGTAGAGTTGCGGTGTCCGCAGCAAC----TCACAACGTTCCCCCTCGTTTTGTTTTTAATTTCAATCCCTT-----CAGTTGCTTGGCTCGCCGGAG------CTTTA--AAATTCCTGATATTACATTAAAACCGC
dp5	Unknown_singleton_3477:436-686 +		TGCCTACG-CAGCGCCC-GACGTCACGCTC--------AG------ACTGATTTTCTGTCTCTCTCGCACGCACTCTTTGTCGTGTCGTTTAATATTAGCGGCGTCTGCCGGAGGAGGGCCATACTGACTTAGTATCGGGTATAACCGTAGAGTTGCGGTGTCCGCAGCAAC----TCACAACGTTCCCCCTCGTTTTTTTTATGT--TACATTCCTCCTTTGAAAATGCGT-----CCCAGAG------CTTTGATAGATTCTCAATGCGGGATTTAAAATAT
droWil2	scf2_1100000004620:4330-4413 +		GTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTTATTTTTAATCTCTT-----TAAATGTTTAGCACTCCGAATAACTCGTTTTA--CCGTTGCCAAACCTTTATTTACACCGC
droVir3	scaffold_12723:941567-941625 -		TCAC----------------------TCTC--------TG------TCTCACTCTCTCTCTCTCTCTCTCTCACTCT------------------------------------------------------------------------------------------------------------------------------------------CTC-----TCTGTGTTTG----------------------------------------------TTAGT
droMoj3	scaffold_6496:6179342-6179439 -		TGACTCCG-TTGCCTTT-ACACTCTCCCTCTCACACTCTGTCAATCTCTCACTCTCTCTCTCTCACTCACTCACTCTTCGTTCTGTTGCTGCCCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAGC
droGri2	scaffold_15110:7567187-7567248 -		GCAG--CGACGT----C-GACGTCACGCTC--------GC------TCTCCCTCTCTCTCTCTTTCTCACTCTCTTGCTGCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G
droAna3	scaffold_12948:518311-518394 +		GTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTTATTTTTAATCTCTT-----TAAGTGTTTAGCACTCCGAATAACTCGTTTTA--CCGTTGCCAAACTAGCATTTACACCGC
droBip1	scf7180000394818:5154-5220 -		TTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGTTTCAATCTTTT-----CAGATGATTAGCTTGCCGTATAACTCTCCGTA--CTGCATCCACA-----------CTTGC
droKik1	scf7180000302677:345775-345850 +		CTCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATGTGTTTAATTTAAATCGTTT-----TAACCATGTATTACACTTGACTACTAAACTTC--TT------GA-----CATTAACTTAAA
droFic1	scf7180000452451:8556-8611 +		GCTC--CGTCAGCGTCGCGATGCAGTGC--------AGAATCAG--ACTGATTTTCTCTCTCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCGC
droEle1	scf7180000490995:100106-100177 -		TTAG---------------------------------------------------------------------------------------------------------------------------------TAACGGGTATC---TTATATTCGGGGA----------ACTCGACTACAGCGTTCCCCCTTGTTTTAATTATTTTTTTAA----------------------------------------------------------------------TC
droRho1	scf7180000779501:269519-269592 +		TACC-----------------------------------------------------------------------------------------------------------------------------TGAGTAACGGGTATC---TGATAGTCGGGGC----------ACCCGACTATAGCGTTCTCTCTTGTTTTGTTTTTATTTTCAA------------------------------------------------------------------------
droBia1	scf7180000301495:122718-122762 -		GTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTTCGTTTTTTGTCTAATTTTATTTGTTT-----CAGTTGCGT---------------------------------------------------G
droTak1	scf7180000414560:301344-301421 +		TACC-----------------------------------------------------------------------------------------------------------------------------TGAGTAACGGGTATC---TGATAGTCGGGGC----------ATCCGACTATAACGTTCCCTCTTGTTTTATATTCAATTTCAGTT--------------------------------------------------------------------TC
droEug1	scf7180000409803:28876-28960 -		AG-----------------------------------------------------------------------------------------------------------------------------------TAATGGGTATT---TTATAGTGCCGGC----------ATTCGACTATAGCGTTTCCTCTTGTTTTGTATATAATTTTATTGTTTT-----T--ATGTTTAGC------------------------------------------------T
dm3	chr4:622834-622905 -		ACTA---------------------------------------------------------------------------------------------------------------------------GTTCAGTAACGGGTATC---TGATAGTCGGGGA----------ACTCGACTACAACGTTCTCTCTTGTTTTGAATTTAATT----------------------------------------------------------------------------
droSec2	scaffold_7:1788552-1788557 +		AAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGC
droYak3	3R:24952762-24952857 -		ACAC-------------------------------------------------------------------------------------------------------------------------TAGCTGAGTAACGGGTATC---AGATAGTCGGGGA----------ACTCGACTATAGCGTTCTCTCTTGTTTTGTTTCAACTTGAAGTCCTTG------------------------------------------------------CATTGCCATGGC
droEre2	scaffold_4820:3380856-3380905 +		CGTC--------------------ATAGCC--------AG------CGCAGGTCTCGGCCTCTCTCGCTCGCGCTCTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCGT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droPer2

TGGCTACG-CAGCGCCC-GACGTCACGCTC--------AG------ACTGATTTTCTGTCTCTCTCGCACGCACTCTTTGTCGTGTCGTTTAATATTAGCGGCGTCTGCCGAAGGAGAGCCATACTGCCTTAGTATCGGGTATAACTGTAGAGTTGCGGTGTCCGCAGCAAC----TCACAACGTTCCCCCTCGTTTTGTTTTTAATTTCAATCCCTT-----CAGTTGCTTGGCTCGCCGGAG------CTTTA--AAATTCCTGATATTACATTAAAACCGC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...........................................................CTCTCTCGCACGCACTCTTTGTC..........................................................................................................................................................................................................	23	20	0.25	5	5	0	0	0	0	0
.................................................................................................................................................................................................................................GTTGCTTGGCTCGCCGGAG------T.................................	20	7	0.14	1	0	1	0	0	0	0
..........................................................................................................................................................TGCGGTGTCCGCAGCAAC----TCACAA......................................................................................................	24	20	0.10	2	0	2	0	0	0	0
.......................................G------ACTGATTTTCTGTCTCTCTCG.........................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
...........................................................................................AATATTAGCGGCGTCTGC...............................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0
.....................................................................................................................................TATCGGGTATAACTGTAGAGTTGCGG.............................................................................................................................	26	20	0.05	1	0	1	0	0	0	0
......................................AG------ACTGATTTTCTGTCTCTCT...........................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0

dp5

TGCCTACG-CAGCGCCC-GACGTCACGCTC--------AG------ACTGATTTTCTGTCTCTCTCGCACGCACTCTTTGTCGTGTCGTTTAATATTAGCGGCGTCTGCCGGAGGAGGGCCATACTGACTTAGTATCGGGTATAACCGTAGAGTTGCGGTGTCCGCAGCAAC----TCACAACGTTCCCCCTCGTTTTTTTTATGT--TACATTCCTCCTTTGAAAATGCGT-----CCCAGAG------CTTTGATAGATTCTCAATGCGGGATTTAAAATAT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...................................................................................................................................................................................................................................TGCGT-----CCCAGAG------CTTTGATAGATTC.....................	25	1	214.00	214	0	182	21	0	2	0	2	7	0	0
.............................................................................................................................................................................................................................................................TGATAGATTCTCAATGCGGGATT........	23	1	116.00	116	0	102	1	0	12	0	0	1	0	0
...................................................................................................................................................................................................................................TGCGT-----CCCAGAG------CTTTGATAGATT......................	24	1	104.00	104	0	96	0	0	8	0	0	0	0	0
................................................................................................................................................................................................................TACATTCCTCCTTTGAAAATGCGT-----CCC............................................	27	2	54.00	108	0	63	44	0	0	0	1	0	0	0
.............................................................................................................................................................................................................................TGAAAATGCGT-----CCCAGAG------CTTTGA............................	24	3	51.67	155	0	134	1	0	0	0	1	18	1	0
.............................................................................................................................................................................................................T--TACATTCCTCCTTTGAAAATGCGT-----C..............................................	26	2	40.00	80	0	72	8	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TGATAGATTCTCAATGCGGGATTT.......	24	1	40.00	40	0	37	2	0	1	0	0	0	0	0
................................................................................................................................................................................................................TACATTCCTCCTTTGAAAATGCGT-----CC.............................................	26	2	39.00	78	0	65	13	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TGATAGATTCTCAATGCGGGAT.........	22	1	36.00	36	0	27	1	0	8	0	0	0	0	0
........................................................................................................................................................................................................................TCCTTTGAAAATGCGT-----CCCAGAG------CTT...............................	26	2	34.50	69	0	63	4	0	1	0	1	0	0	0
.............................................................................................................................................................................................................................TGAAAATGCGT-----CCCAGAG------CTTTG.............................	23	3	33.67	101	0	99	0	0	0	0	0	1	1	0
...................................................................................................................................................................................................................................TGCGT-----CCCAGAG------CTTTGATAGAT.......................	23	1	32.00	32	0	28	3	0	1	0	0	0	0	0
...........................................................................................................................................................................................................................TTTGAAAATGCGT-----CCCAGAG------CTTTG.............................	25	2	31.50	63	0	60	0	0	0	0	0	3	0	0
................................................................................................................................................................................................................TACATTCCTCCTTTGAAAATGCGT-----C..............................................	25	2	27.50	55	0	49	6	0	0	0	0	0	0	0
.............................................................................................................................................................................................................T--TACATTCCTCCTTTGAAAATGCGT-----CC.............................................	27	2	26.50	53	0	43	7	0	3	0	0	0	0	0
...........................................................................................................................................................................................................................TTTGAAAATGCGT-----CCCAGAG------CTTTGA............................	26	2	26.00	52	0	50	0	0	0	0	0	2	0	0
.............................................................................................................................................................................................................T--TACATTCCTCCTTTGAAAATGCGT-----CCC............................................	28	2	25.50	51	0	38	12	0	0	0	1	0	0	0
.....................................................................................................................................................................................................................TCCTCCTTTGAAAATGCGT-----CCCAGAG------C.................................	27	2	25.00	50	0	44	2	0	3	0	1	0	0	0
.........................................................................................................................................................................................................TATGT--TACATTCCTCCTTTGAAAA.........................................................	24	1	24.00	24	0	23	0	0	0	0	0	1	0	0
.....................................................................................................................................................................................................................TCCTCCTTTGAAAATGCGT-----CCCAGAG------..................................	26	2	21.00	42	0	39	2	0	1	0	0	0	0	0
....................................................................................................................................................................................................................................GCGT-----CCCAGAG------CTTTGATAGATTC.....................	24	1	18.00	18	0	18	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................TTTGATAGATTCTCAATGCGGGATT........	25	1	18.00	18	0	14	1	0	0	0	0	3	0	0
.............................................................................................................................................................................................................................................................TGATAGATTCTCAATGCGG............	19	1	18.00	18	0	16	1	0	1	0	0	0	0	0
........................................................................................................................................................................................................................TCCTTTGAAAATGCGT-----CCCAGAG------C.................................	24	2	17.00	34	0	34	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................TGCGT-----CCCAGAG------CTTTGATAGATTCT....................	26	1	14.00	14	0	12	0	0	2	0	0	0	0	0
.............................................................................................................................................................................................................................TGAAAATGCGT-----CCCAGAG------CTTTGATAGA........................	28	1	13.00	13	0	13	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................T--TACATTCCTCCTTTGAAAATGCGT-----...............................................	25	2	12.50	25	0	22	2	0	0	0	1	0	0	0
.............................................................................................................................................................................................................................TGAAAATGCGT-----CCCAGAG------CTTTGATA..........................	26	3	12.33	37	0	29	1	0	0	0	0	7	0	0
...........................................................................................................................................................................................................................TTTGAAAATGCGT-----CCCAGAG------CTT...............................	23	2	11.50	23	0	21	1	0	1	0	0	0	0	0
...................................................................................................................................................................................................................................TGCGT-----CCCAGAG------CTTTGATAG.........................	21	2	11.00	22	0	21	0	0	1	0	0	0	0	0
........................................................................................................................................................................................................................TCCTTTGAAAATGCGT-----CCCAGAG------..................................	23	2	11.00	22	0	20	0	0	0	0	0	2	0	0
.............................................................................................................................................................................................................................................................TGATAGATTCTCAATGCGGGA..........	21	1	11.00	11	0	10	0	0	1	0	0	0	0	0
.............................................................................................................................................................................................................................TGAAAATGCGT-----CCCAGAG------CTT...............................	21	3	10.67	32	0	29	2	0	0	0	1	0	0	0
........................................................................................................................................................................................................................TCCTTTGAAAATGCGT-----CCCAGAG------CT................................	25	2	10.00	20	0	19	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................GCGT-----CCCAGAG------CTTTGATAGATT......................	23	1	10.00	10	0	10	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TTGAAAATGCGT-----CCCAGAG------CTTTGA............................	25	3	10.00	30	0	27	0	0	0	0	0	3	0	0
............................TC--------AG------ACTGATTTTCTGTCTCTCTCGC........................................................................................................................................................................................................................	26	20	9.90	198	0	0	198	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................TCCTCCTTTGAAAATGCGT-----CCCAGA.........................................	25	2	9.50	19	0	18	0	0	0	0	0	1	0	0
...........................................................................................................................................................................................................................................................TTTGATAGATTCTCAATGCGGGATTT.......	26	1	9.00	9	0	9	0	0	0	0	0	0	0	0
..............................................................................................................................GACTTAGTATCGGGTATAACCGTAG.....................................................................................................................................	25	20	8.50	170	0	154	0	0	16	0	0	0	0	0
.............................................................................................................................................................................................................T--TACATTCCTCCTTTGAAAATGCG.....................................................	24	2	8.50	17	0	16	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................TCCTCCTTTGAAAATGCGT-----CCCAGAG------CTT...............................	29	2	8.50	17	0	15	2	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................TTTGATAGATTCTCAATGCGGGAT.........	24	1	8.00	8	0	5	2	0	1	0	0	0	0	0
............................................................................................................................................................................................................................................................TTGATAGATTCTCAATGCGGGATT........	24	1	8.00	8	0	8	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TGAAAATGCGT-----CCCAGAG------CTTTGATAG.........................	27	2	7.50	15	0	14	0	0	0	0	1	0	0	0
.....................................................................................TCGTTTAATATTAGCGGCGTCTG................................................................................................................................................................................	23	20	7.25	145	0	145	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................CTTTGAAAATGCGT-----CCCAGAG------CTT...............................	24	2	7.00	14	0	14	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................TGT--TACATTCCTCCTTTGAAAATGCG.....................................................	26	2	7.00	14	0	11	1	0	0	0	0	2	0	0
.......................................................................................................................................................................................................................................T-----CCCAGAG------CTTTGATAGATTCTCAA.................	25	1	7.00	7	0	7	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TGAAAATGCGT-----CCCAGAG------CTTT..............................	22	3	6.33	19	0	19	0	0	0	0	0	0	0	0
..............................................................................TGTCGTGTCGTTTAATATTAGC........................................................................................................................................................................................	22	20	6.10	122	0	0	0	0	0	0	0	59	63	0
...................................................................................................................................................................................................................................TGCGT-----CCCAGAG------CTTTGATAGA........................	22	1	6.00	6	0	5	0	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................GATAGATTCTCAATGCGGGATT........	22	1	6.00	6	0	6	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................ATGCGT-----CCCAGAG------CTTTGATAGATTC.....................	26	1	6.00	6	0	4	0	0	0	0	0	2	0	0
............................................................................................................................................................................................................................TTGAAAATGCGT-----CCCAGAG------CTTTG.............................	24	3	5.00	15	0	14	0	0	0	0	0	1	0	0
.......................................................................................................................................................................................................................................T-----CCCAGAG------CTTTGATAGATTCTCA..................	24	1	5.00	5	0	5	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................GCGT-----CCCAGAG------CTTTGATAGAT.......................	22	1	5.00	5	0	5	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TGATAGATTCTCAATGCGGG...........	20	1	5.00	5	0	5	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................TGCGT-----CCCAGAG------CTTTGATAGATTCTC...................	27	1	5.00	5	0	4	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................TTTGAAAATGCGT-----CCCAGAG------CTTTGAA...........................	27	2	4.50	9	0	9	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................TTCCTCCTTTGAAAATGCGT-----CCCAG..........................................	25	2	4.00	8	0	7	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................................CCTCCTTTGAAAATGCGT-----CCCAGAG------..................................	25	2	4.00	8	0	8	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................TTTTTATGT--TACATTCCTCCTTTGAA...........................................................	26	1	4.00	4	0	1	0	0	0	0	0	3	0	0
.............................................................................................................................................................................................................................TGAAAATGCGT-----CCCAGAG------CTTTGAT...........................	25	3	4.00	12	0	9	0	0	3	0	0	0	0	0
..................................................................................................................................................................................................................................ATGCGT-----CCCAGAG------CTTTGATAGATT......................	25	1	4.00	4	0	3	0	0	0	0	0	1	0	0
.............................................................................................................................................................................................................................TGAAAATGCGT-----CCCAGAG------CTTTGAA...........................	25	3	4.00	12	0	10	0	0	0	0	0	2	0	0
...........................................................................................................................................................................................................................TTTGAAAATGCGT-----CCCAGAG------CT................................	22	2	4.00	8	0	6	2	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................CGT-----CCCAGAG------CTTTGATAGATTCTCAA.................	27	1	4.00	4	0	4	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................TGCGT-----CCCAGAG------CTTTGATAGAA.......................	23	1	4.00	4	0	4	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................TACATTCCTCCTTTGAAAATGCGT-----...............................................	24	2	4.00	8	0	8	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................GATAGATTCTCAATGCGGGAT.........	21	1	4.00	4	0	4	0	0	0	0	0	0	0	0
.......................................................CTGTCTCTCTCGCACGCACTC................................................................................................................................................................................................................	21	20	3.75	75	0	75	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................GAAAATGCGT-----CCCAGAG------CTTTGA............................	23	3	3.67	11	0	11	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................ACATTCCTCCTTTGAAAATGCGT-----CCC............................................	26	2	3.50	7	0	7	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................TTCCTCCTTTGAAAATGCGT-----CCCAGAG------C.................................	28	2	3.50	7	0	7	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................TCCTCCTTTGAAAATGCGT-----CCCAG..........................................	24	2	3.50	7	0	7	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................GAAAATGCGT-----CCCAGAG------CTTTG.............................	22	3	3.33	10	0	10	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................T-----CCCAGAG------CTTTGATAGATTCTC...................	23	1	3.00	3	0	3	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................TTTGATAGATTCTCAATGCGGGAC.........	24	1	3.00	3	0	1	2	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................CCCAGAG------CTTTGATAGATTCTCAATG...............	26	1	3.00	3	0	3	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................TTTGATAGATTCTCAATGCGGG...........	22	1	3.00	3	0	3	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TTATGT--TACATTCCTCCTTTGAAAA.........................................................	25	1	3.00	3	0	1	1	0	1	0	0	0	0	0
...........................................................................................................................................................................................................................TTTGAAAATGCGT-----CCCAGAG------CTTT..............................	24	2	3.00	6	0	6	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................ACATTCCTCCTTTGAAAATGCGT-----CC.............................................	25	2	3.00	6	0	6	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................GATAGATTCTCAATGCGGGATTT.......	23	1	3.00	3	0	3	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................CCTCCTTTGAAAATGCGT-----CCCAGAG------C.................................	26	2	3.00	6	0	5	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................TGCGT-----CCCAGAG------CTTTGATAGATTT.....................	25	1	3.00	3	0	3	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TTGAAAATGCGT-----CCCAGAG------CTTTGATA..........................	27	3	3.00	9	0	9	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................TCCTCCTTTGAAAATGCGT-----CCCAGAG------CT................................	28	2	3.00	6	0	6	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................TTTTTTATGT--TACATTCCTCCTTTG.............................................................	25	1	3.00	3	0	3	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................TGCGT-----CCCAGAG------CTTTGATAGATTCA....................	26	1	3.00	3	0	2	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................TTTTTTATGT--TACATTCCTCCTTTGA............................................................	26	1	3.00	3	0	0	0	0	0	0	0	3	0	0
.....................................................................................................................................................................................................TTTTTATGT--TACATTCCTCCTTTGAAAA.........................................................	28	1	3.00	3	0	0	1	0	0	0	0	2	0	0
.............................................................................................................................................................................................................................TGAAAATGCGT-----CCCAGAG------CT................................	20	3	3.00	9	0	9	0	0	0	0	0	0	0	0
..............................................................................................................................GACTTAGTATCGGGTATAACCG........................................................................................................................................	22	20	2.55	51	0	51	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................TTTGAAAATGCGT-----CCCAGAG------CTTTGATA..........................	28	2	2.50	5	0	5	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................CTTTGAAAATGCGT-----CCCAGAG------CT................................	23	2	2.50	5	0	5	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................CCTTTGAAAATGCGT-----CCCAGAG------CTT...............................	25	2	2.50	5	0	5	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TGAAAATGCGT-----CCCAGAG------CTA...............................	21	3	2.33	7	0	6	0	0	0	0	1	0	0	0
............................TC--------AG------ACTGATTTTCTGTCTCTCTCGCACG.....................................................................................................................................................................................................................	29	20	2.15	43	0	43	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................TTTGATAGATTCTCAATGCGGGAA.........	24	1	2.00	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................TTGATAGATTCTCAATGCGGGATTT.......	25	1	2.00	2	0	1	1	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TGATAGATTCTCAATGCGGGATTTA......	25	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................TTTGATAGATTCTCAATGCGGGA..........	23	1	2.00	2	0	2	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................TTCCTCCTTTGAAAATGCGT-----CCCAGAG------..................................	27	2	2.00	4	0	4	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................TTTGAAAATGCGT-----CCCAGAG------..................................	20	2	2.00	4	0	4	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................TCCTCCTTTGAAAATGCGT-----CC.............................................	21	2	2.00	4	0	4	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................AG------CTTTGATAGATTCTCAATGCGG............	24	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................CCAGAG------CTTTGATAGATTCTCAATGCGG............	28	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................TTTTTATGT--TACATTCCTCCTTTGAAA..........................................................	27	1	2.00	2	0	1	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................................TATGT--TACATTCCTCCTTTGAAAATG.......................................................	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................CTCCTTTGAAAATGCGT-----CCCAGAG------CTT...............................	27	2	2.00	4	0	3	0	0	0	0	0	1	0	0
................................................................................................................................................................................................................................................................TAGATTCTCAATGCGGGATTTAAAAT..	26	1	2.00	2	0	0	0	0	0	0	0	2	0	0
..........................................................................................................................................................................................................................................................CTTTGATAGATTCTCAATGCGGGATT........	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TGATAGATTCTCAATGCGA............	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................ATGT--TACATTCCTCCTTTGAAAA.........................................................	23	2	2.00	4	0	4	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................TGCGT-----CCCAGAG------CTTTGATAGATA......................	24	1	2.00	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TTGAAAATGCGT-----CCCAGAG------CTT...............................	22	3	2.00	6	0	6	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TGATAGATTCTCAATGCGGGATTTAAA....	27	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................TGCGT-----CCCAGAG------CTTTGATAGATTG.....................	25	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................T-----CCCAGAG------CTTTGATAGATTCTCAATG...............	27	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................TGT--TACATTCCTCCTTTGAAAATGCGT-----CC.............................................	29	2	2.00	4	0	3	1	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................CCCAGAG------CTTTGATAGATTCTCA..................	23	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................TGCGT-----CCCAGAG------CTTTGATAGAAA......................	24	1	2.00	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TTGAAAATGCGT-----CCCAGAG------C.................................	20	3	2.00	6	0	5	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................TGCGT-----CCCAGAG------CTTTGATA..........................	20	3	2.00	6	0	6	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................TTTGATAGATTCTCAATGCG.............	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TGATAGATTCTCAATGCGGGATC........	23	1	2.00	2	0	0	2	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................GT-----CCCAGAG------CTTTGATAGATTCTCA..................	25	1	2.00	2	0	2	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................TACATTCCTCCTTTGAAAATGCG.....................................................	23	2	2.00	4	0	4	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................TAGATTCTCAATGCGGGATT........	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................TTGATAGATTCTCAATGCGG............	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................TCTCAATGCGGGATTTAAAATAT	23	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TGATAGATTCTCAATGCGGGATTA.......	24	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................TATGT--TACATTCCTCCTTTGAAAAT........................................................	25	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................TGCGT-----CCCAGAG------CTTTGATAGATTCTCAA.................	29	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................CGT-----CCCAGAG------CTTTGATAGATTC.....................	23	1	2.00	2	0	2	0	0	0	0	0	0	0	0
........................................................TGTCTCTCTCGCACGCACTCT...............................................................................................................................................................................................................	21	20	1.75	35	0	35	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TGAAAATGCGT-----CCCAGAG------C.................................	19	3	1.67	5	0	5	0	0	0	0	0	0	0	0
.......................................................................................................................................................................GCAAC----TCACAACGTTCCCCCTCG..........................................................................................	23	20	1.65	33	0	33	0	0	0	0	0	0	0	0
.....................................................................................TCGTTTAATATTAGCGGCGTCTGC...............................................................................................................................................................................	24	20	1.60	32	0	30	2	0	0	0	0	0	0	0
..........AGCGCCC-GACGTCACGCTC--------AG------..............................................................................................................................................................................................................................................	21	20	1.55	31	0	31	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................TACATTCCTCCTTTGAAAATGCGT-----CCCAG..........................................	29	2	1.50	3	0	3	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................T--TACATTCCTCCTTTGAAAATGC......................................................	23	2	1.50	3	0	3	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................TCCTTTGAAAATGCGT-----CCCAG..........................................	21	2	1.50	3	0	3	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................CTCCTTTGAAAATGCGT-----CCCAGAG------C.................................	25	2	1.50	3	0	2	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................................CATTCCTCCTTTGAAAATGCGT-----CC.............................................	24	2	1.50	3	0	3	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................ACATTCCTCCTTTGAAAATGCGT-----C..............................................	24	2	1.50	3	0	3	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................TTCCTCCTTTGAAAATGCGT-----CCCA...........................................	24	2	1.50	3	0	3	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................TACATTCCTCCTTTGAAAATGCGT-----CCA............................................	27	2	1.50	3	0	3	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................TGT--TACATTCCTCCTTTGAAAATGCGT-----C..............................................	28	2	1.50	3	0	2	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................TTTGAAAATGCGT-----CCCAGAG------C.................................	21	2	1.50	3	0	3	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................TTTGATAGATTCTCAATGCGGGAAG........	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................TTGATAGATTCTCAATGCGGGATTG.......	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................CATTCCTCCTTTGAAAATGCGT-----CCC............................................	25	2	1.00	2	0	1	1	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................AGATTCTCAATGCGGGATTTA......	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................TTGATAGATTCTCAATGCGGGAT.........	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................TGT--TACATTCCTCCTTTGAAAATGC......................................................	25	2	1.00	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................TTTTATGT--TACATTCCTCCTT...............................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................TTGATAGATTCTCAATGCGGGATTA.......	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................TTCCCCCTCGTTTTTTTTATGT--T...........................................................................	23	1	1.00	1	0	0	0	0	0	0	0	1	0	0
...........................................................................................................................................................................................................................................................TTTGATAGATTCTCAATGCGGGATA........	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................ATGT--TACATTCCTCCTTTGAAAATGC......................................................	26	2	1.00	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TTATGT--TACATTCCTCCTTTA.............................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TTATGT--TACATTCCTCCTTTGA............................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................TGCGT-----CCCAGAG------CTTTGATAGATTAAA...................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................AAAATGCGT-----CCCAGAG------CTTTGATAG.........................	25	2	1.00	2	0	1	0	0	1	0	0	0	0	0
.................................................................................................................................................................................................................................AATGCGT-----CCCAGAG------CTTTGATAGATTC.....................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................................................................T--TACATTCCTCCTTTGAAAATGCA.....................................................	24	2	1.00	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................GAAAATGCGT-----CCCAGAG------CTTTGATAGA........................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................TCCTTTGAAAATGCGT-----CCCAGA.........................................	22	2	1.00	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................TGCGT-----CCCAGAG------CTTTGATAGATTCC....................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................CCCAGAG------CTTTGATAGATTCTCAAA................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TTGAAAATGCGT-----CCCAGAG------..................................	19	3	1.00	3	0	3	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................TTTTTTTTATGT--TACATTCCTCCTT...............................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................CCCAGAG------CTTTGATAGATTCTCAA.................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................TTCTCAATGCGGGATTTAAAATAT	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................AAATGCGT-----CCCAGAG------CTTTGATAGAT.......................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TGATAGATTCTCAATGCGGGATA........	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................GT-----CCCAGAG------CTTTGATAGATTCTCAA.................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................CCTCCTTTGAAAATGCGT-----CCCAGAG------CT................................	27	2	1.00	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................TTGATAGATTCTCAATGCGGGA..........	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................GCGT-----CCCAGAG------CTTTGATAGATTCTCAA.................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................TTTGAAAATGCGT-----CCCAGAG------CTTTGAT...........................	27	2	1.00	2	0	1	1	0	0	0	0	0	0	0
................................................................................................................................................................................................................TACATTCCTCCTTTGAAAATGCGT-----CCCA...........................................	28	2	1.00	2	0	1	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................TTTTTTTATGT--TACATTCCTCCTTTG.............................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................CAGAG------CTTTGATAGATTCTCA..................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................CGT-----CCCAGAG------CTTTGATAGATTCTCAAT................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................TGCGT-----CCCAGAG------CTTTGATAGATAA.....................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................TCCTCCTTTGAAAATGCGT-----CCCA...........................................	23	2	1.00	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................ATTCCTCCTTTGAAAATGCGT-----CCCA...........................................	25	2	1.00	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................TTTGATAGATTCTCAATGCGG............	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................TGCGT-----CCCAGAG------CTTTGATAGT........................	22	2	1.00	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................CCTCCTTTGAAAATGCGT-----CCCAGAG------CTT...............................	28	2	1.00	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................TTGATAGATTCTCAATGCGGG...........	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................AG------CTTTGATAGATTCTCAATGCGGGAT.........	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................TCCTCCTTTGAAAATGCGT-----CCC............................................	22	2	1.00	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................ATAGATTCTCAATGCGGGAT.........	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................GATAGATTCTCAATGCGGGA..........	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................GAG------CTTTGATAGATTCTCAATGCGG............	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................TATGT--TACATTCCTCCTTTGAAA..........................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................AAATGCGT-----CCCAGAG------CTTTGATAGA........................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................TGCGT-----CCCAGAG------CTTTGATAGATTA.....................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................CCCAGAG------CTTTGATAGATTCTC...................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TGATAGATTCTCAATGCGGGAG.........	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................TTTTTTATGT--TACATTCCTCCTTTGAAAA.........................................................	29	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................TTTTTTTATGT--TACATTCCTCCTT...............................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................TTTTTTATGT--TACATTCCTCCTTTA.............................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................GCGT-----CCCAGAG------CTTTGATAGATTCT....................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................TATGT--TACATTCCTCCTTTGAAAAA........................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................CTTTGAAAATGCGT-----CCCAGAG------..................................	21	2	1.00	2	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TGATAGATTCTCAATGCGAA...........	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................TCTCAATGCGGGATTTAAA....	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................TAGATTCTCAATGCGGGATTTAAAA...	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................T--TACATTCCTCCTTTGAAAATGCGT-----CCA............................................	28	2	1.00	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................TGCGT-----CCCAGAG------CTTTGATAGATTCTCT..................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TGAAAATGCGT-----CCCAGAG------A.................................	19	3	1.00	3	0	3	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................GCGT-----CCCAGAG------CTTTGATAGATTCTCA..................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................GCGT-----CCCAGAG------CTTTGATAGAA.......................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................CGT-----CCCAGAG------CTTTGATAGATTCTC...................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................................TTCCTCCTTTGAAAATGCGT-----CC.............................................	22	2	1.00	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................TTTGATAGATTCTCAATGCGGGGC.........	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................GAG------CTTTGATAGATTCTCAATGC..............	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................TTTTATGT--TACATTCCTCCTTTGAAAA.........................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................TGCGT-----CCCAGAG------CTTTGATAGATTCTCA..................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................AGAG------CTTTGATAGATTCTCAATGC..............	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................CAGAG------CTTTGATAGATTCTCAATGCG.............	26	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..................................................................................................................................................................................................................................ATGCGT-----CCCAGAG------CTTTGATAG.........................	22	2	1.00	2	0	1	0	0	1	0	0	0	0	0
....................................................................................................................................................................................................................................GCGT-----CCCAGAG------CTTTGATAGATTCA....................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................TGT--TACATTCCTCCTTTGAAAATGCGA-----...............................................	27	2	1.00	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................CGT-----CCCAGAG------CTTTGATAGA........................	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...........................................................................................................................................................................................................................TTTGAAAATGCGT-----CCCAGAG------CTA...............................	23	2	1.00	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................T-----CCCAGAG------CTTTGATAGATTCTCAAA................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................T-----CCCAGAG------CTTTGATAGAA.......................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................AG------CTTTGATAGATTCTCAATGCGGG...........	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................GCGT-----CCCAGAG------CTTTGATAG.........................	20	2	1.00	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................TTTTATGT--TACATTCCTCCTTTG.............................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................CAGCAAC----TCACAACGTTCCCCCT............................................................................................	23	20	0.95	19	0	0	0	0	0	0	0	16	3	0
................................................................................................................................................................GTCCGCAGCAAC----TCACAACGT...................................................................................................	21	20	0.95	19	0	19	0	0	0	0	0	0	0	0
.......................................................................................GTTTAATATTAGCGGCGTCTG................................................................................................................................................................................	21	20	0.95	19	0	19	0	0	0	0	0	0	0	0
.....................................................................................TCGTTTAATATTAGCGGCGTC..................................................................................................................................................................................	21	20	0.90	18	0	17	0	0	0	0	0	0	1	0
..............................................................................................................................GACTTAGTATCGGGTATAACCGTAA.....................................................................................................................................	25	20	0.80	16	0	16	0	0	0	0	0	0	0	0
.............................................................................................................................TGACTTAGTATCGGGTATAACCGTAGAG...................................................................................................................................	28	20	0.75	15	0	0	0	0	0	0	0	7	8	0

droWil2

GTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTTATTTTTAATCTCTT-----TAAATGTTTAGCACTCCGAATAACTCGTTTTA--CCGTTGCCAAACCTTTATTTACACCGC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...................................................................................................................................................................................................................................................TAACTCGTTTTA--CCGTTGCCAAACCTT............	27	2	11.00	22	0	21	0	1	0
........................................................................................................................................................................................................................................AGCACTCCGAATAACTCGTTTTA--CCGT.......................	27	5	4.00	20	0	10	1	9	0
...................................................................................................................................................................................................................................................TAACTCGTTTTA--CCGTTGCCAAACCT.............	26	2	3.50	7	0	7	0	0	0
.............................................................................................................................................................................................................................................TCCGAATAACTCGTTTTA--CCGTTGCCA..................	27	6	1.17	7	0	5	0	2	0
................................................................................................................................................................................................................................AAATGTTTAGCACTCCGAATAACTCG..................................	26	2	1.00	2	0	2	0	0	0
....................................................................................................................................................................................................................................................AACTCGTTTTA--CCGTTGCCAAACCTT............	26	2	1.00	2	0	2	0	0	0
....................................................................................................................................................................................................................TCTCTT-----TAAATGTTTAGCACTCCGAA.........................................	26	2	1.00	2	0	2	0	0	0
...................................................................................................................................................................................................................................................TAACTCGTTTTA--CCGTTGCCAAACC..............	25	2	1.00	2	0	2	0	0	0
..........................................................................................................................................................................................................................................CACTCCGAATAACTCGTTTTA--CCGT.......................	25	6	1.00	6	0	6	0	0	0
.............................................................................................................................................................................................................................................TCCGAATAACTCGTTTTA--CCGTTGCC...................	26	6	0.83	5	0	3	0	2	0
.......................................................................................................................................................................................................................................TAGCACTCCGAATAACTCGTTTTA--CCGT.......................	28	5	0.80	4	0	4	0	0	0
.........................................................................................................................................................................................................................................GCACTCCGAATAACTCGTTTTA--CCGT.......................	26	5	0.80	4	0	4	0	0	0
........................................................................................................................................................................................................................................AGCACTCCGAATAACTCGTTTTA--CCGTTG.....................	29	5	0.60	3	0	3	0	0	0
........................................................................................................................................................................................................................................AGCACTCCGAATAACTCGTTTTA--CC.........................	25	5	0.60	3	0	1	0	2	0
...............................................................................................................................................................................................................................................CGAATAACTCGTTTTA--CCGTTGCCAAACC..............	29	2	0.50	1	0	1	0	0	0
.........................................................................................................................................................................................................................T-----TAAATGTTTAGCACTCCGAATAACTCG..................................	28	2	0.50	1	0	1	0	0	0
...............................................................................................................................................................................................................................TAAATGTTTAGCACTCCGAATAACTCGT.................................	28	2	0.50	1	0	1	0	0	0
......................................................................................................................................................................................................TTTTTTATTTTTAATCTCTT-----TAAATG.......................................................	26	2	0.50	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................TTTA--CCGTTGCCAAACCTTTATTTACAC...	28	2	0.50	1	0	1	0	0	0
..............................................................................................................................................................................................................TTTTAATCTCTT-----TAAATGTTTAGCACT..............................................	27	2	0.50	1	0	0	0	1	0
....................................................................................................................................................................................................................................................AACTCGTTTTA--CCGTTGCCAAACCT.............	25	2	0.50	1	0	1	0	0	0
...................................................................................................................................................................................................................................................TAACTCGTTTTA--CCGTTGCCAAACCTTG...........	28	2	0.50	1	0	1	0	0	0
............................................................................................................................................................................................................................................................TTA--CCGTTGCCAAACCTTTATTTACAC...	27	2	0.50	1	0	1	0	0	0
........................................................................................................................................................................................................................................AGCACTCCGAATAACTCGTTTTA--CCG........................	26	5	0.40	2	0	2	0	0	0
.........................................................................................................................................................................................................................................GCACTCCGAATAACTCGTTTTA--CC.........................	24	5	0.40	2	0	2	0	0	0
.............................................................................................................................................................................................................................................TCCGAATAACTCGTTTTA--CCGTTGCCAA.................	28	6	0.33	2	0	2	0	0	0
............................................................................................................................................................................................................................................CTCCGAATAACTCGTTTTA--CCGTTGC....................	26	6	0.33	2	0	1	0	1	0
................................................................................................................................................................................................................................................GAATAACTCGTTTTA--CCGTTGCCAAAC...............	27	5	0.20	1	0	1	0	0	0
........................................................................................................................................................................................................................................AGCACTCCGAATAACTCGTTTTA--CCGTA......................	28	5	0.20	1	0	1	0	0	0
...................................................................................................................................................................................................................................................TAACTCGTTTTA--CCGTTGCCAAAC...............	24	5	0.20	1	0	1	0	0	0
..................................................................................................................................................................................................................................................ATAACTCGTTTTA--CCGTTGCCAAAC...............	25	5	0.20	1	0	1	0	0	0
................................................................................................................................................................................................................................................GAATAACTCGTTTTA--CCGTTGC....................	22	6	0.17	1	0	1	0	0	0
................................................................................................................................................................................................................................................GAATAACTCGTTTTA--CCGT.......................	19	6	0.17	1	0	1	0	0	0
...............................................................................................................................................................................................................................................CGAATAACTCGTTTTA--CCGTTGCCA..................	25	6	0.17	1	0	0	0	1	0
...........................................................................................................................................................................................................................................ACTCCGAATAACTCGTTTTA--CCGTTGC....................	27	6	0.17	1	0	1	0	0	0
..............................................................................................................................................................................................................................................CCGAATAACTCGTTTTA--CCGTTGCC...................	25	6	0.17	1	0	1	0	0	0
................................................................................................................................................................................................................................................GAATAACTCGTTTTA--CCGTTGCCA..................	24	6	0.17	1	0	1	0	0	0
..........................................................................................................................................................................................................................................CACTCCGAATAACTCGTTTTA--CCGTTG.....................	27	6	0.17	1	0	1	0	0	0
..............................................................................................................................................................................................................................................CCGAATAACTCGTTTTA--CCGTTGCCA..................	26	6	0.17	1	0	1	0	0	0
...........................................................................................................................................................................................................................................ACTCCGAATAACTCGTTTTA--CCGT.......................	24	6	0.17	1	0	1	0	0	0

droVir3

TCAC----------------------TCTC--------TG------TCTCACTCTCTCTCTCTCTCTCTCTCACTCT------------------------------------------------------------------------------------------------------------------------------------------CTC-----TCTGTGTTTG----------------------------------------------TTAGT

Size

Hit Count

Total Norm

Total

M027
Male-body

M028
Head

M047
Female-body

M061
Embryo

SRR060654
Ovary

SRR060655
Testis

SRR060656
Ovary

SRR060657
Testis

SRR060658
Ovary

SRR060659
Testis

SRR060660
Ovary

SRR060661
Embryo

SRR060662
Embryo

SRR060663
Embryo

SRR060664
Male-body

SRR060665
Female-body

SRR060666
Male-body

SRR060667
Female-body

SRR060668
Male-body

SRR060669
Female-body

SRR060670
Testis

SRR060671
Male-body

SRR060672
Female-body

SRR060673
Ovary

SRR060674
Ovary

SRR060675
Ovary

SRR060676
Ovary

SRR060677
Ovary

SRR060678
Testis

SRR060679
Testis

SRR060680
Testis

SRR060681
Testis

SRR060682
Embryo

SRR060683
Testis

SRR060684
Embryo

SRR060685
Embryo

SRR060686
Embryo

SRR060687
Embryo

SRR060688
Ovary

SRR060689
Testis

SRR1106712
embryo_0-2h

SRR1106713
embryo_0-2h

SRR1106714
embryo_2-4h

SRR1106715
embryo_4-6h

SRR1106716
embryo_4-6h

SRR1106717
embryo_6-8h

SRR1106718
embryo_6-8h

SRR1106719
embryo_8-10h

SRR1106720
embryo_8-10h

SRR1106721
embryo_10-12h

SRR1106722
embryo_10-12h

SRR1106723
embryo_12-14h

SRR1106724
embryo_12-14h

SRR1106725
embryo_14-16h

SRR1106726
embryo_14-16h

SRR1106727
larvae

SRR1106728
larvae

SRR1106729
mixed whole adult body

SRR1106730
embryo_16-30h

V047
Embryo

V053
Head

V116
Male-body

GSM1528803
follicle cells

No Reads

droMoj3

TGACTCCG-TTGCCTTT-ACACTCTCCCTCTCACACTCTGTCAATCTCTCACTCTCTCTCTCTCACTCACTCACTCTTCGTTCTGTTGCTGCCCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAGC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

GCAG--CGACGT----C-GACGTCACGCTC--------GC------TCTCCCTCTCTCTCTCTTTCTCACTCTCTTGCTGCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droAna3

GTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTTATTTTTAATCTCTT-----TAAGTGTTTAGCACTCCGAATAACTCGTTTTA--CCGTTGCCAAACTAGCATTTACACCGC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...................................................................................................................................................................................................................................................TAACTCGTTTTA--CCGTTGCCAAACTAG............	27	12	4.75	57	41	15	1	0	0	0
.................................................................................................................................................................................................................TAATCTCTT-----TAAGTGTTTAGCACTCC............................................	26	12	2.25	27	1	26	0	0	0	0
.............................................................................................................................................................................................................................................TCCGAATAACTCGTTTTA--CCGTTGCC...................	26	12	1.75	21	4	17	0	0	0	0
...................................................................................................................................................................................................................................................TAACTCGTTTTA--CCGTTGCCAAAC...............	24	12	1.67	20	10	10	0	0	0	0
...................................................................................................................................................................................................................................................TAACTCGTTTTA--CCGTTGCCAAACTA.............	26	12	1.67	20	13	7	0	0	0	0
...................................................................................................................................................................................................................................................TAACTCGTTTTA--CCGTTGCCAAACT..............	25	12	1.50	18	11	7	0	0	0	0
.......................................................................................................................................................................................................................................................TCGTTTTA--CCGTTGCCAAACTAGCATT........	27	12	1.17	14	4	10	0	0	0	0
...................................................................................................................................................................................................................................................TAACTCGTTTTA--CCGTTGCCAAACTAGCA..........	29	12	1.08	13	11	2	0	0	0	0
...................................................................................................................................................................................................................................................TAACTCGTTTTA--CCGTTGCCAAACTAGC...........	28	12	1.08	13	8	5	0	0	0	0
.................................................................................................................................................................................................................TAATCTCTT-----TAAGTGTTTAGCACTCCGA..........................................	28	12	0.83	10	1	8	1	0	0	0
.............................................................................................................................................................................................................................................................TA--CCGTTGCCAAACTAGCATTTACACC..	27	12	0.58	7	0	7	0	0	0	0
...................................................................................................................................................................................................................................................TAACTCGTTTTA--CCGTTGCC...................	20	12	0.50	6	2	4	0	0	0	0
..................................................................................................................................................................................................................................................ATAACTCGTTTTA--CCGTTGCCAAACTAG............	28	12	0.50	6	5	1	0	0	0	0
................................................................................................................................................................................................................................................GAATAACTCGTTTTA--CCGTTGCCAAAC...............	27	12	0.42	5	3	2	0	0	0	0
....................................................................................................................................................................................................................................................AACTCGTTTTA--CCGTTGCCAAACTAG............	26	12	0.42	5	4	1	0	0	0	0
..............................................................................................................................................................................................................................................CCGAATAACTCGTTTTA--CCGTTGCC...................	25	12	0.42	5	4	1	0	0	0	0
...................................................................................................................................................................................................................................................TAACTCGTTTTA--CCGTTGCCAAACC..............	25	12	0.33	4	0	4	0	0	0	0
...................................................................................................................................................................................................................................................TAACTCGTTTTA--CCGTTGCCA..................	21	12	0.33	4	4	0	0	0	0	0
............................................................................................................................................................................................................................................CTCCGAATAACTCGTTTTA--CCGTTGCC...................	27	12	0.33	4	1	3	0	0	0	0
...........................................................................................................................................................................................................................................ACTCCGAATAACTCGTTTTA--CCGTTGCC...................	28	12	0.25	3	1	2	0	0	0	0
.......................................................................................................................................................................................................................................................TCGTTTTA--CCGTTGCCAAACTAGCATC........	27	12	0.25	3	0	3	0	0	0	0
..........................................................................................................................................................................................................................................CACTCCGAATAACTCGTTTTA--CCGTT......................	26	12	0.25	3	1	2	0	0	0	0
..................................................................................................................................................................................................................................................ATAACTCGTTTTA--CCGTTGCCAAACT..............	26	12	0.25	3	1	2	0	0	0	0
.............................................................................................................................................................................................................................................................TA--CCGTTGCCAAACTAGCATTTACACCG.	28	12	0.25	3	2	1	0	0	0	0
.................................................................................................................................................................................................................TAATCTCTT-----TAAGTGTTTAGCACTCCGAA.........................................	29	12	0.25	3	3	0	0	0	0	0
................................................................................................................................................................................................................TTAATCTCTT-----TAAGTGTTTAGCACTCC............................................	27	12	0.25	3	0	3	0	0	0	0
...............................................................................................................................................................................................................TTTAATCTCTT-----TAAGTGTTTAGCACTCC............................................	28	12	0.25	3	0	3	0	0	0	0
.............................................................................................................................................................................................................................................TCCGAATAACTCGTTTTA--CCGTTGCCA..................	27	12	0.25	3	2	1	0	0	0	0
..............................................................................................................................................................................................................................................................A--CCGTTGCCAAACTAGCATTTACACC..	26	12	0.25	3	0	3	0	0	0	0
.......................................................................................................................................................................................................................................TAGCACTCCGAATAACTCGTTTTA--CC.........................	26	12	0.25	3	0	3	0	0	0	0
..................................................................................................................................................................................................................AATCTCTT-----TAAGTGTTTAGCACTCCGAA.........................................	28	12	0.17	2	1	1	0	0	0	0
.....................................................................................................................................................................................................................................................ACTCGTTTTA--CCGTTGCCAAACTAGCATT........	29	12	0.17	2	1	1	0	0	0	0
............................................................................................................................................................................................................................................CTCCGAATAACTCGTTTTA--CCGTTGC....................	26	12	0.17	2	1	1	0	0	0	0
...................................................................................................................................................................................................................................................TAACTCGTTTTA--CCGTTGCCAAA................	23	12	0.17	2	2	0	0	0	0	0
.............................................................................................................................................................................................................................................................TA--CCGTTGCCAAACTAGCATTTACACCGC	29	12	0.17	2	0	2	0	0	0	0
.......................................................................................................................................................................................................................................TAGCACTCCGAATAACTCGTTTTA--CCGT.......................	28	12	0.17	2	0	2	0	0	0	0
...............................................................................................................................................................................................................TTTAATCTCTT-----TAAGTGTTTAGCAC...............................................	25	12	0.17	2	0	2	0	0	0	0
.........................................................................................................................................................................................................................................GCACTCCGAATAACTCGTTTTA--CCGT.......................	26	12	0.17	2	0	2	0	0	0	0
....................................................................................................................................................................................................................................................AACTCGTTTTA--CCGTTGCCAAACTAGCAT.........	29	12	0.17	2	2	0	0	0	0	0
..........................................................................................................................................................................................................................................................TTTTA--CCGTTGCCAAACTAGCATTTACA....	28	12	0.17	2	2	0	0	0	0	0
..........................................................................................................................................................................................................................................................TTTTA--CCGTTGCCAAACTAGCATT........	24	12	0.17	2	0	2	0	0	0	0
..................................................................................................................................................................................................................................................ATAACTCGTTTTA--CCGTTGCCAAAC...............	25	12	0.17	2	2	0	0	0	0	0
...........................................................................................................................................................................................................................................ACTCCGAATAACTCGTTTTA--CCGTTGC....................	27	12	0.17	2	1	1	0	0	0	0
.......................................................................................................................................................................................................................................................TCGTTTTA--CCGTTGCCAAACT..............	21	12	0.17	2	1	1	0	0	0	0
.............................................................................................................................................................................................................................................TCCGAATAACTCGTTTTA--CCGTTGC....................	25	12	0.17	2	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................TA--CCGTTGCCAAACTAGCATT........	21	12	0.17	2	1	1	0	0	0	0
.............................................................................................................................................................................................................................................................TA--CCGTTGCCAAACTAGCATTTACA....	25	12	0.08	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................CGAATAACTCGTTTTA--CCGTTGCC...................	24	12	0.08	1	0	1	0	0	0	0
..................................................................................................................................................................................................................AATCTCTT-----TAAGTGTTTAGCACTCCGA..........................................	27	12	0.08	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................TTTTA--CCGTTGCCAAACTAGCATTT.......	25	12	0.08	1	0	1	0	0	0	0
.................................................................................................................................................................................................................TAATCTCTT-----TAAGTGTTTAGCACTCCC...........................................	27	12	0.08	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................TTA--CCGTTGCCAAACTAGCATT........	22	12	0.08	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................TAACTCGTTTTA--CCGTTGCCAAACTT.............	26	12	0.08	1	1	0	0	0	0	0
.................................................................................................................................................................................................................TAATCTCTT-----TAAGTGTTTAGCACTC.............................................	25	12	0.08	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................TTTA--CCGTTGCCAAACTAGCA..........	21	12	0.08	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................CGTTTTA--CCGTTGCCAAACTAGCA..........	24	12	0.08	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................GAATAACTCGTTTTA--CCGT.......................	19	12	0.08	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................ATAACTCGTTTTA--CCGTTGCCA..................	22	12	0.08	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................CTCGTTTTA--CCGTTGCCAAACTAGCATT........	28	12	0.08	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................TA--CCGTTGCCAAACTAGCATTTACAC...	26	12	0.08	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................GAATAACTCGTTTTA--CCGTTG.....................	21	12	0.08	1	0	0	0	0	1	0
....................................................................................................................................................................................................................................................AACTCGTTTTA--CCGTTGCCAAACTAGC...........	27	12	0.08	1	0	1	0	0	0	0
................................................................................................................................................................................................................TTAATCTCTT-----TAAGTGTTTAGCACTC.............................................	26	12	0.08	1	0	1	0	0	0	0
................................................................................................................................................................................................................TTAATCTCTT-----TAAGTGTTTAG..................................................	21	12	0.08	1	0	0	0	0	1	0
.......................................................................................................................................................................................................................................TAGCACTCCGAATAACTCGTTTTA--C..........................	25	12	0.08	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................TTTTA--CCGTTGCCAAACTAGCATTTA......	26	12	0.08	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................TGTTTAGCACTCCGAATAACTCGTT................................	25	12	0.08	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................T-----TAAGTGTTTAGCACTCCGAATAACTC...................................	27	12	0.08	1	0	0	1	0	0	0
.......................................................................................................................................................................................................................................................TCGTTTTA--CCGTTGCCAAACTAGC...........	24	12	0.08	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................GTGTTTAGCACTCCGAAT........................................	18	12	0.08	1	1	0	0	0	0	0
...............................................................................................................................................................................................................TTTAATCTCTT-----TAAGTGTTTAGCACT..............................................	26	12	0.08	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................AACTCGTTTTA--CCGTTGCCAAACTAGCA..........	28	12	0.08	1	0	1	0	0	0	0
......................................................................................................................................................................................................................TCTT-----TAAGTGTTTAGCACTCCGAATAAC.....................................	28	12	0.08	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................CCGAATAACTCGTTTTA--CCGTTGC....................	24	12	0.08	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................GTTGCCAAACTAGCATTTACA....	21	12	0.08	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................CGAATAACTCGTTTTA--CCGTTGCCAA.................	26	12	0.08	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................AACTCGTTTTA--CCGTTGCCAAACT..............	24	12	0.08	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................TAGCACTCCGAATAACTCGTTTTA--CCG........................	27	12	0.08	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................TAGCACTCCGAATAACTCGTTTTA--CA.........................	26	12	0.08	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................GAATAACTCGTTTTA--CCGTTGCCAA.................	25	12	0.08	1	1	0	0	0	0	0
.............................................................................................................................................................................................................TTTTTAATCTCTT-----TAAGTGTTTAGC.................................................	25	12	0.08	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................CTCCGAATAACTCGTTTTA--CCGTTG.....................	25	12	0.08	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................CACTCCGAATAACTCGTTTTA--CCGTTGCC...................	29	12	0.08	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................TTA--CCGTTGCCAAACTAGCATTTAC.....	25	12	0.08	1	1	0	0	0	0	0
.................................................................................................................................................................................................................TAATCTCTT-----TAAGTGTTTAGCACTCCG...........................................	27	12	0.08	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................CCAAACTAGCATTTACACCGC	21	12	0.08	1	1	0	0	0	0	0
................................................................................................................................................................................................................TTAATCTCTT-----TAAGTGTTTAGCACC..............................................	25	12	0.08	1	0	1	0	0	0	0
................................................................................................................................................................................................................................AAGTGTTTAGCACTCCGAATAACTCGT.................................	27	12	0.08	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................TTAGCACTCCGAATAACTCGTTTTA--CC.........................	27	12	0.08	1	0	1	0	0	0	0
.................................................................................................................................................................................................................TAATCTCTT-----TAAGTGTTTAGCACTCCGG..........................................	28	12	0.08	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................TTTAGCACTCCGAATAACTCGTTTTA--CC.........................	28	12	0.08	1	1	0	0	0	0	0
....................................................................................................................................................................................................................TCTCTT-----TAAGTGTTTAGCACTCCGAA.........................................	26	12	0.08	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................CACTCCGAATAACTCGTTTTA--CCGT.......................	25	12	0.08	1	0	1	0	0	0	0
........................................................................................................................................................................................................................TT-----TAAGTGTTTAGCACTCCGAATAAC.....................................	26	12	0.08	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................TCCGAATAACTCGTTTTA--CCGT.......................	22	12	0.08	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................TAACTCGTTTTA--CCGTTGCTT..................	21	12	0.08	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................CTCCGAATAACTCGTTTTA--CCGTTGCCA..................	28	12	0.08	1	1	0	0	0	0	0
..............................................................................................................................................................................................................TTTTAATCTCTT-----TAAGTGTTTAGCAC...............................................	26	12	0.08	1	0	1	0	0	0	0
..................................................................................................................................................................................................................AATCTCTT-----TAAGTGTTTAGCACTCC............................................	25	12	0.08	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................TTTA--CCGTTGCCAAACTAGCATTTACAC...	28	12	0.08	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................CGAATAACTCGTTTTA--CCGTTGCCA..................	25	12	0.08	1	1	0	0	0	0	0
................................................................................................................................................................................................................................AAGTGTTTAGCACTCCGAATAACTCGTT................................	28	12	0.08	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................AATAACTCGTTTTA--CCGTTGCC...................	22	12	0.08	1	0	1	0	0	0	0
................................................................................................................................................................................................................................AAGTGTTTAGCACTCCGAAA........................................	20	12	0.08	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................TTA--CCGTTGCCAAACTAGCATTTACAC...	27	12	0.08	1	0	1	0	0	0	0

droBip1

TTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGTTTCAATCTTTT-----CAGATGATTAGCTTGCCGTATAACTCTCCGTA--CTGCATCCACA-----------CTTGC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CTCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATGTGTTTAATTTAAATCGTTT-----TAACCATGTATTACACTTGACTACTAAACTTC--TT------GA-----CATTAACTTAAA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GCTC--CGTCAGCGTCGCGATGCAGTGC--------AGAATCAG--ACTGATTTTCTCTCTCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCGC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TTAG---------------------------------------------------------------------------------------------------------------------------------TAACGGGTATC---TTATATTCGGGGA----------ACTCGACTACAGCGTTCCCCCTTGTTTTAATTATTTTTTTAA----------------------------------------------------------------------TC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TACC-----------------------------------------------------------------------------------------------------------------------------TGAGTAACGGGTATC---TGATAGTCGGGGC----------ACCCGACTATAGCGTTCTCTCTTGTTTTGTTTTTATTTTCAA------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTTCGTTTTTTGTCTAATTTTATTTGTTT-----CAGTTGCGT---------------------------------------------------G	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TACC-----------------------------------------------------------------------------------------------------------------------------TGAGTAACGGGTATC---TGATAGTCGGGGC----------ATCCGACTATAACGTTCCCTCTTGTTTTATATTCAATTTCAGTT--------------------------------------------------------------------TC	Size	Hit Count	Total Norm	Total
No Reads

droEug1

AG-----------------------------------------------------------------------------------------------------------------------------------TAATGGGTATT---TTATAGTGCCGGC----------ATTCGACTATAGCGTTTCCTCTTGTTTTGTATATAATTTTATTGTTTT-----T--ATGTTTAGC------------------------------------------------T	Size	Hit Count	Total Norm	Total
No Reads

dm3

ACTA---------------------------------------------------------------------------------------------------------------------------GTTCAGTAACGGGTATC---TGATAGTCGGGGA----------ACTCGACTACAACGTTCTCTCTTGTTTTGAATTTAATT----------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
............................................................................................................................................TATC---TGATAGTCGGGGA----------ACTCGAC...........................................................................................................	24	20	5.05	101	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	29	0	0	0	0	0	1	0	0	48	0	0	0	0	0	0	3	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.........................................................................................................................................................TCGGGGA----------ACTCGACTACAACGTTC.................................................................................................	24	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................GGTATC---TGATAGTCGGGGA----------AC................................................................................................................	21	20	3.70	74	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	72	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................GGGTATC---TGATAGTCGGGGA----------AC................................................................................................................	22	20	3.35	67	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	65	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0
...............................................................................................................................................................A----------ACTCGACTACAACGTTCTCT..............................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................ACTACAACGTTCTCTCTTGTT........................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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............................................................................................................................................TATC---TGATAGTCGGGGA----------..................................................................................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.....................................................................................................................................TAACGGGTATC---TGATAGTCGGGG.............................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................TGATAGTCGGGGA----------ACTCGACT..........................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................ATC---TGATAGTCGGGGA----------ACTCGA............................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................ATC---TGATAGTCGGGGA----------ACTCGACT..........................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................GTATC---TGATAGTCGGGGA----------ACT...............................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

AAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

ACAC-------------------------------------------------------------------------------------------------------------------------TAGCTGAGTAACGGGTATC---AGATAGTCGGGGA----------ACTCGACTATAGCGTTCTCTCTTGTTTTGTTTCAACTTGAAGTCCTTG------------------------------------------------------CATTGCCATGGC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.CAC-------------------------------------------------------------------------------------------------------------------------TAGCTGAGTAACGGGTATC---AGA......................................................................................................................................	25	20	12.25	245	0	245	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................TATAGCGTTCTCTCTTGTTTTGTTT..................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................TCGACTATAGCGTTCTCTCTTGTTTTGT....................................................................................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

CGTC--------------------ATAGCC--------AG------CGCAGGTCTCGGCCTCTCTCGCTCGCGCTCTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCGT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..........................AGCC--------AG------CGCAGGTCTCGGCCTCTCT...........................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0
...C--------------------ATAGCC--------AG------CGCAGGTCTCGGCCTCT.............................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1	0

dpe_684

scaffold_111:109244-109394 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-23.5	-23.2	-23.1