dpe_681

Name	Class	Family	Strand
Bilbo	LINE	LOA	-

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGCCTAGCTTGCAGCGCTCGGAGGTGCGCTTCTTGTCCATGGTCGGCCATGTTCGTCGAATTATGCGACATCCTGGCTTAATTTGCCACATATCGTTTGTAAGTCGCTTGTATTGCTCTTTTATAATAAGATTACAGATGGCCATTGGCATACAGATATGCTCCTTGCCTTGGAGAAGGGGGATTGTAGTGCCAGATCTGGACAGCTCGTCCGCTATACAGTTGCCCTCGATGTCCTGGTTTCCCGGGACC ***********************************************************.........((..(((.......((((....((((((((.((((..(((((.........)))))...))))))))))))....)))).................)))...))***************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M042 female body	V111 male body	V042 embryo	M021 embryo	V057 head
........................................................................................................................................................................................................................TACAGTTGCCCTCGATGTCCTGGTT..........	25	0	6	0.83	5	5	0	0	0	0
..........................................................................................................................................................................................TAGTGCCAGATCTGGACAGCTCGTCCGC.....................................	28	0	6	0.67	4	1	3	0	0	0
.............................................................TATGCGACATCCTGGCTTAATTTGCCACA.................................................................................................................................................................	29	0	4	0.50	2	2	0	0	0	0
.................................TGTCCATGGTCGGCCATGTTCGTCG.................................................................................................................................................................................................	25	0	4	0.50	2	2	0	0	0	0
......................................................................................................................................................TACAGATATGCTCCTTGCCTTGGA.............................................................................	24	0	6	0.50	3	3	0	0	0	0
......................................................................................................................................................TACAGATATGCTCCTTGCCTTGGAG............................................................................	25	0	6	0.33	2	2	0	0	0	0
..........................................................................................................................................TGGCCATTGGCATACAGATATGCTCCT......................................................................................	27	0	6	0.33	2	2	0	0	0	0
.................................TGTCCATGGTCGGCCATGTTCGTCGAAT..............................................................................................................................................................................................	28	0	4	0.25	1	1	0	0	0	0
.................................TGTCCATGGTCGGCCATGTTCGTCGA................................................................................................................................................................................................	26	0	4	0.25	1	1	0	0	0	0
.............................................................TATGCGACATCCTGGCTTAATT........................................................................................................................................................................	22	0	4	0.25	1	1	0	0	0	0
........................................................................................................................................................................................................................TACAGTTGCCCTCGATGTCCTGG............	23	0	9	0.22	2	2	0	0	0	0
..............................................................................TAATTTGCCACATATCGTTTGTAAG....................................................................................................................................................	25	0	5	0.20	1	1	0	0	0	0
....TAGCTTGCAGCGCTCGGAGGTGCGC..............................................................................................................................................................................................................................	25	0	5	0.20	1	1	0	0	0	0
.............................................................................................................................................................................................TGCCAGATCTGGACAGCTCGTCCGCT....................................	26	0	6	0.17	1	1	0	0	0	0
......................................................................................................................................................TACAGATATGCTCCTTGCCTTGG..............................................................................	23	0	6	0.17	1	1	0	0	0	0
....................................................................................................................................TACAGATGGCCATTGGCATACAG................................................................................................	23	0	6	0.17	1	1	0	0	0	0
....................................................................................................................................TACAGATGGCCATTGGCATA...................................................................................................	20	0	6	0.17	1	1	0	0	0	0
..........................................................................................................................................................................................TAGTGCCAGATCTGGACAGCTCGTC........................................	25	0	6	0.17	1	0	1	0	0	0
......................................................................................................................................................TACAGATATGCTCCTTGCCTTGGAC............................................................................	25	1	6	0.17	1	1	0	0	0	0
....................................................................................................................................TACAGATGACCATTGGCATACAGATA.............................................................................................	26	1	6	0.17	1	1	0	0	0	0
..........................................................................................................................................................................................TAGTGCCAGATCTGGACAGCTCGTCC.......................................	26	0	6	0.17	1	1	0	0	0	0
......................................................................................................................................................TACAGATATGCTCCTTGCCTTGGAGAA..........................................................................	27	0	6	0.17	1	1	0	0	0	0
..............................................................................................................................................................................................................................TGCCCTCGGTGTGCTGGTTTCCC......	23	2	6	0.17	1	1	0	0	0	0
......................................................................................................................................................................................................................TATACAGTTGCCCTCGATGTCC...............	22	0	20	0.15	3	1	0	2	0	0
TGCCTAGCGTGCAGCGCTCGGAGG...................................................................................................................................................................................................................................	24	1	7	0.14	1	1	0	0	0	0
........................................................................................................................................................................................TGTAGTGCCAGATCTGGACAGCT............................................	23	0	7	0.14	1	1	0	0	0	0
........................................................................................................................................................................................................................TACAGTTGCCCTCGATGTCCTGGT...........	24	0	9	0.11	1	1	0	0	0	0
.........................................................................................................................................................................................................................ACAGTTGCCCTCGATGTCCTGGT...........	23	0	9	0.11	1	1	0	0	0	0
........................................................................................................................................................................................................................TACAGTTGCCCTCGATGTCCCGGTT..........	25	1	20	0.10	2	2	0	0	0	0
........................TGCGCTTCTTGTCCATGGTCG..............................................................................................................................................................................................................	21	0	15	0.07	1	0	0	1	0	0
...........................................................................................................TTGTATTGCTCTTTTATAATA...........................................................................................................................	21	0	15	0.07	1	1	0	0	0	0
..............................................................................................................................................................................GAAGGGGGATTGTAGTGCC..........................................................	19	0	20	0.05	1	0	0	0	1	0
.............................................................................................................................................................................AGAAGGGGGATTGTAGTGCC..........................................................	20	0	20	0.05	1	0	1	0	0	0
..........................................................................................................................................................................TGGAGAAGGGGGATTGTAGTGCCA.........................................................	24	0	20	0.05	1	1	0	0	0	0
..............................................................................................................................................................................GAAGGGGGATTGTAGTGCCAGATCTGG..................................................	27	0	20	0.05	1	1	0	0	0	0
..........................................................................................................................................................................................................CAGCTCGTCCGCTATACAGTTGC..........................	23	0	20	0.05	1	0	0	1	0	0
......................................................................................................................................................................TCCTTGGAGAGGGGGGGTTGT................................................................	21	3	20	0.05	1	0	0	0	0	1
.................................TGTCCATGGTCGGCCATGTA......................................................................................................................................................................................................	20	1	20	0.05	1	1	0	0	0	0
.............................................................................................................................................................................................................CTCGTCCGCTATACAGTTGCCCTCGATG..................	28	0	20	0.05	1	1	0	0	0	0
.........................................................................................................................................ATGGCCATTGGCATACAGATATCC..........................................................................................	24	1	20	0.05	1	1	0	0	0	0
.........................................................................................................................................................................TTGGAGAAGGGGGATTGTAGCG............................................................	22	1	20	0.05	1	1	0	0	0	0
.........................................................................................................................................................................TTGGAGAAGGGGGATTGTAGTGC...........................................................	23	0	20	0.05	1	0	1	0	0	0
..............................................................................................................................................................................GAAGGGGGATTGTAGTGCCAGATC.....................................................	24	0	20	0.05	1	0	1	0	0	0
....................................................................................................................................................................................................................GCTATACAGTTGCCCTCGATGTC................	23	0	20	0.05	1	1	0	0	0	0
........................................................................................................................................................................................................................TACAGTTGCCCTCGATGTC................	19	0	20	0.05	1	0	0	1	0	0
.................................................................................................................................................................................................................TCCGCTATACAGTTGCCCTCGT....................	22	1	20	0.05	1	1	0	0	0	0
.........................................................................................................................................................................TTGGAGAAGGGGGATTGTAGTGCCT.........................................................	25	1	20	0.05	1	0	1	0	0	0
..............................................................................................................................................................................GAAGGGGGATTGTAGTGCCAGATCC....................................................	25	1	20	0.05	1	0	1	0	0	0

ACGGATCGAACGTCGCGAGCCTCCACGCGAAGAACAGGTACCAGCCGGTACAAGCAGCTTAATACGCTGTAGGACCGAATTAAACGGTGTATAGCAAACATTCAGCGAACATAACGAGAAAATATTATTCTAATGTCTACCGGTAACCGTATGTCTATACGAGGAACGGAACCTCTTCCCCCTAACATCACGGTCTAGACCTGTCGAGCAGGCGATATGTCAACGGGAGCTACAGGACCAAAGGGCCCTGG ***************************************************************************.........((..(((.......((((....((((((((.((((..(((((.........)))))...))))))))))))....)))).................)))...))***********************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M042 female body	V111 male body	V057 head	M021 embryo
............................................................................................................................................................................................................CGAGCAGGCGATATGTCAACGG.........................	22	0	20	0.35	7	7	0	0	0
........................................................................................................................................CTACCGGTAACCGTATGTCTATAC...........................................................................................	24	0	6	0.33	2	2	0	0	0
.....................TCCACGCGAAGAACAGGTACCA................................................................................................................................................................................................................	22	0	16	0.25	4	2	1	0	1
............................................................................GAATTAAACGGTGTATAGCAA..........................................................................................................................................................	21	0	5	0.20	1	1	0	0	0
......................................................................................................................................GTCTACCGGTAACCGTAGGTCTATAC...........................................................................................	26	1	6	0.17	1	1	0	0	0
............................................................................................................................................CGGTAACCGTATGTCTATACGAGGAA.....................................................................................	26	0	6	0.17	1	1	0	0	0
...................CCTCCACGCGAAGAACAGGTACCA................................................................................................................................................................................................................	24	0	15	0.13	2	2	0	0	0
.....................................................................................................................................................TTTGTCGATACGTGGAACGGA.................................................................................	21	3	8	0.13	1	0	0	1	0
...........................................................................................................................................................................................................TCGATCAGGCGATGTGTC..............................	18	2	20	0.10	2	2	0	0	0
....................CTCCACGCGAAGAACAGGTACCA................................................................................................................................................................................................................	23	0	15	0.07	1	0	1	0	0
...............CGAGCCTCCACGCGAAGAACAGGTA...................................................................................................................................................................................................................	25	0	15	0.07	1	1	0	0	0
.........................................................................................................................................................................................................TGTCGAGCAGGCGATACGTCAACGGA........................	26	2	20	0.05	1	1	0	0	0
....................................................................................................TGCTGCGGACATAACGAGA....................................................................................................................................	19	3	20	0.05	1	0	1	0	0

Species	Coordinate	ID	Alignment
droPer2	scaffold_111:106126-106376 +	dpe_681	TGCCTAGCT----TGCAGCGCTCGGAGGTGCGCTTCTTGTCCATGGTCGGCCATGTTCGTCGAATTATGCGACATCCTGGCTTAATTTGCCACATATCGTTTGTAAGTCGC-TTGTATTGC-TCTTTTATAATAAGATTACAGATGGCCATTGGCATACAGATAT-GCTCCTTGCCTTGG--AGAAGGGGGATTGTAGTGCCAGATCTGGACAGCTCGTCCGCTATACAGTTGCCCTCGATGTCCTGGTTTCCCGGGACC
dp5	Unknown_group_72:28615-28865 +		TGCTTAGCT----TGCAGAGCTCGGAGGTGCGCTTCTTGTCCATGGTCAGCCATGTTTGCCGAGTTATGCGCCTTCGTGGCACTATTTGCCACATATCGTTTGTTATTCGC-TTGTATTGC-TCTTTTATAATAAGCTTACAGGTGGCCACTGGCATACAGATAT-CCTCCTTGTCTTGG--AGAAGGGGGATTGTAGTGCCAGATCTGGCCAGCTCGTCCGCTATACAGTTGCCCTCGATGTCCTGGTGGCCCGGGACC
droGri2	scaffold_3113:1748-1998 +		GACTTAGAT----TGCACAGCTCTCTGCTGCGCTTGGAGTTAAGAATAGGCCATGTCTGGTGTGCTATGCGGGCACAGGTGGCACTTTGCCATTTACTGCATGACCTGCGC-CTGTACTCC-TCTTTGATGTTGAGCTTGCAGGTAGCTAGAGGCATACTTATAC-CTTCCTTATCCGCG--AGGAGTGGTAGTATAGTACCTTTCCTAGCTAGCTCATCGGCTTTACAGTTGCCTTCAATGTCCTGGTGGCCAGGGACC
droAna3	scaffold_12276:31611-31865 +		GGTCTGGTGAGAGCAATAAGCCTCGCCGATCTTTTCCGAGAGCGTGTCGGCCAGATCAGACGAGATGTTCTACAGGTCTGGAGATTACTCCATTTCCTATTTGCTGCCAGG-TCGAAAAAC-TCCCTGCACTTTAGCCTGCAAGTAGCCAAGGGTATGCCTACAA-GTTCTTTCTCCGGT--AGGAGAGGGTTGGTAGTTCCTGCCCTGGCTAGTTCATCTGCAGCACAGTTTCCCTCGTGGTCCCTGTGACCGGGAACC
droBip1	scf7180000391851:26570-26824 +		TGCCTATTCAGGGCGATGAGCATCATTGACCTCTTCCTAGATCGGATTGGCCATATCATGCGGGAGTTCCTGCAGTTTTGGAGGTTTCTCCATTTCCGCAGTGATGCGCGG-TCAAAGTGA-TCCCTGCATTTTAGCCTACACGTAGCTAAGGGGATACCTACTG-GTTCCTTCTCCGGT--AGGAGAGGATTGGTAGTACCTGCTCTTGCTAGTTCGTCGGCGGCGCAGTTACCCTCGTGGTCCCTATGCCCGGGCACC
droKik1	scf7180000301114:16657-16901 +		TGCTCTTGG----AGATCAGTTGCGCGGTTCGCTTCTTATTGAATTCTGGCCAGCATAGTTTCGATCTTCTGTGCTCTGCCTTCGTCGACCATTCCTTGCTGGCTAGTTGT-TTGAAATGG-TCATGAAT-TTCCGTCTGGACCGAGTTCAGGGAGATCTGGATG-T------CTGTTGTCGCTGAG-TGTTCTACTGACCCTTTTCTGGCCAGCTCGTCTGCTTTCTCGTTTCCGTCTATGTCATTGTGTCCGGGTACC
droEle1	scf7180000488292:22625-22875 -		GGTTTAGCT----TTGGAAGTTCAGAAGTTCTCTTCGCATTAATAATTGGCCATGTCTGGAGAGAGATGCGACAATGTCTTACGTTTGTCCATGCTGGGCTCGCAAGTTCT-TTATATTTG-TTTTTAATGTTTAGCTTGCAGGTGGCCATCGGCATACCAATGT-TCTCCTTGTCCGGA--AGGAGGGGAACGTAAGTGCCATGCCTGGCCAACTCATCTGCAATACAATTGCCTGCAATGTTTCGGTGCCCCGGGACC
droRho1	scf7180000777241:41265-41518 +		GGCTGAAAT----TGAGTAGTTCTGATGTTTTCTTATTGTTTATTACAGGCCATGTCTGGTGAGAGATTCGGCATTGCGGTGTGTTTTGCCAATAGGTGTTGGCTAATTTGCTGAAATTGGTTTTTTAATAATTAGCTTGCAAGTAGCCATAGGCATGCCGACATTTCTCCTTTCCTGGA--AGGAGAGGAATGGTGGTGCCTTTCCTGGCTAGCTGGTCTGCTATACAGTTGCCTACGATATCCCGGTGACCCGGAACC
droBia1	scf7180000301582:14680-14929 +		GGCTGAGTT----TGAAGAGTTCCGAAGTTTTTT-ACTGTTAATTACAGGCCATGTCTGGTAAGAGATACGGAACTGTGGTGCGTTTTGCTAATGAGTGTTGGCTAGTTTG-TGAAAATAG-ATTCTGATATTTAGCTTGCAAAATGCTAGGGGCATGCCGAAAT-TCTCATTTTTTGTT--AGAAGAGGCATGATGGTGCCCAGCTTGGCTGACTCGTCCGCTATTTAGTTGCCTACGATGTGCCGATGATCCGGATCT
droTak1	scf7180000414708:11059-11309 +		GGCTGAAAT----TAAGTAGTTCTGATGTTTTCTTATTGTTTATTGCAGGCCATGTCTGGTGAGAGATTCGGCACTGCGGTGTGTTTTGCCACTGAGTGTTGGCTAATTTG-CTAAAATGG-CTTTTAATAATTAGCTTGCAGGTAGCCATAGGCATGCCAACAT-TCTCCTTTCCTGGA--AGGAGAGGTATGGTGGTGCCTTGCCTGGCTAGCTCGTCTGCTATACAGTTGCCTACGATATCCCGGTGACCCGGAACC
droSim2	node_63373:33-283 +		TGGTCAATC----TTAAAAGTTTTGACGTTCTCTTTAAGCTTATTTTTGGCCATATTTGGCGTGTTAGGCGACAGTGTGTGGTGTTTTCCCATATTGTCTGTTTGTTACGG-TTTAGGTTT-TCCCTAAGTAGTAGTTTACAAGTGGCTAAAGGCATACTCATGC-CCTCCATCTCTTGT--ATGAGTGGCGCGGTAGTGCCTTCTCGAGCTAGTTCATCTGCGATGCAGTTGCCTTCTATGTCCCTGTGTCCGGGTACC
droYak3	v2_chr2h_random_005:610585-610835 +		TGGTCTATC----TTAAAAGTTTTGACGTTCTTTTTGAGCTTATTTTTGGCCATATTTGGCGTGTTAGGCGACAGTGTGTGGTGTTTTCCCATATTGTCTGTTTGTTACGG-TTTAGATTT-TCCCGAAGTAGTAGTTTACAAGTGGCTAAAGGCATACTCATGC-CCTCCATCTCTTGT--ATGAGTGGCGCGGTAGTGCCCTCTCGAGCTAGTTCATCTGCGATGCAGTTGCCTTCTATGTCCCTGTGTCCGGGTACC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droPer2

TGCCTAGCT----TGCAGCGCTCGGAGGTGCGCTTCTTGTCCATGGTCGGCCATGTTCGTCGAATTATGCGACATCCTGGCTTAATTTGCCACATATCGTTTGTAAGTCGC-TTGTATTGC-TCTTTTATAATAAGATTACAGATGGCCATTGGCATACAGATAT-GCTCCTTGCCTTGG--AGAAGGGGGATTGTAGTGCCAGATCTGGACAGCTCGTCCGCTATACAGTTGCCCTCGATGTCCTGGTTTCCCGGGACC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.................................................................................................................................................................................................................................TACAGTTGCCCTCGATGTCCTGGTT..........	25	6	0.83	5	0	5	0	0	0	0
...................................................................................................................................................................................................TAGTGCCAGATCTGGACAGCTCGTCCGC.....................................	28	6	0.67	4	0	1	0	0	0	3
.................................................................TATGCGACATCCTGGCTTAATTTGCCACA......................................................................................................................................................................	29	4	0.50	2	0	2	0	0	0	0
.....................................TGTCCATGGTCGGCCATGTTCGTCG......................................................................................................................................................................................................	25	4	0.50	2	0	2	0	0	0	0
............................................................................................................................................................TACAGATAT-GCTCCTTGCCTTGG--A.............................................................................	24	6	0.50	3	0	3	0	0	0	0
............................................................................................................................................................TACAGATAT-GCTCCTTGCCTTGG--AG............................................................................	25	6	0.33	2	0	2	0	0	0	0
................................................................................................................................................TGGCCATTGGCATACAGATAT-GCTCCT........................................................................................	27	6	0.33	2	0	2	0	0	0	0
.....................................TGTCCATGGTCGGCCATGTTCGTCGAAT...................................................................................................................................................................................................	28	4	0.25	1	0	1	0	0	0	0
.....................................TGTCCATGGTCGGCCATGTTCGTCGA.....................................................................................................................................................................................................	26	4	0.25	1	0	1	0	0	0	0
.................................................................TATGCGACATCCTGGCTTAATT.............................................................................................................................................................................	22	4	0.25	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................TACAGTTGCCCTCGATGTCCTGG............	23	9	0.22	2	0	2	0	0	0	0
..................................................................................TAATTTGCCACATATCGTTTGTAAG.........................................................................................................................................................	25	5	0.20	1	0	1	0	0	0	0
....TAGCT----TGCAGCGCTCGGAGGTGCGC...................................................................................................................................................................................................................................	25	5	0.20	1	0	1	0	0	0	0
......................................................................................................................................................................................................TGCCAGATCTGGACAGCTCGTCCGCT....................................	26	6	0.17	1	0	1	0	0	0	0
............................................................................................................................................................TACAGATAT-GCTCCTTGCCTTGG--..............................................................................	23	6	0.17	1	0	1	0	0	0	0
..........................................................................................................................................TACAGATGGCCATTGGCATACAG...................................................................................................	23	6	0.17	1	0	1	0	0	0	0
..........................................................................................................................................TACAGATGGCCATTGGCATA......................................................................................................	20	6	0.17	1	0	1	0	0	0	0
...................................................................................................................................................................................................TAGTGCCAGATCTGGACAGCTCGTC........................................	25	6	0.17	1	0	0	0	0	0	1
............................................................................................................................................................TACAGATAT-GCTCCTTGCCTTGG--AC............................................................................	25	6	0.17	1	0	1	0	0	0	0
...................................................................................................................................................................................................TAGTGCCAGATCTGGACAGCTCGTCC.......................................	26	6	0.17	1	0	1	0	0	0	0
............................................................................................................................................................TACAGATAT-GCTCCTTGCCTTGG--AGAA..........................................................................	27	6	0.17	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................TATACAGTTGCCCTCGATGTCC...............	22	20	0.15	3	0	1	2	0	0	0
.................................................................................................................................................................................................TGTAGTGCCAGATCTGGACAGCT............................................	23	7	0.14	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................TACAGTTGCCCTCGATGTCCTGGT...........	24	9	0.11	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................ACAGTTGCCCTCGATGTCCTGGT...........	23	9	0.11	1	0	1	0	0	0	0
............................TGCGCTTCTTGTCCATGGTCG...................................................................................................................................................................................................................	21	15	0.07	1	0	0	1	0	0	0
................................................................................................................TTGTATTGC-TCTTTTATAATA..............................................................................................................................	21	15	0.07	1	0	1	0	0	0	0
.......................................................................................................................................................................................GAAGGGGGATTGTAGTGCC..........................................................	19	20	0.05	1	1	0	0	0	0	0
......................................................................................................................................................................................AGAAGGGGGATTGTAGTGCC..........................................................	20	20	0.05	1	0	0	0	0	0	1
.................................................................................................................................................................................TGG--AGAAGGGGGATTGTAGTGCCA.........................................................	24	20	0.05	1	0	1	0	0	0	0
.......................................................................................................................................................................................GAAGGGGGATTGTAGTGCCAGATCTGG..................................................	27	20	0.05	1	0	1	0	0	0	0
...................................................................................................................................................................................................................CAGCTCGTCCGCTATACAGTTGC..........................	23	20	0.05	1	0	0	1	0	0	0
.....................................TGTCCATGGTCGGCCATGTA...........................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
......................................................................................................................................................................................................................CTCGTCCGCTATACAGTTGCCCTCGATG..................	28	20	0.05	1	0	1	0	0	0	0
................................................................................................................................................................................TTGG--AGAAGGGGGATTGTAGTGC...........................................................	23	20	0.05	1	0	0	0	0	0	1
.......................................................................................................................................................................................GAAGGGGGATTGTAGTGCCAGATC.....................................................	24	20	0.05	1	0	0	0	0	0	1
.............................................................................................................................................................................................................................GCTATACAGTTGCCCTCGATGTC................	23	20	0.05	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................TACAGTTGCCCTCGATGTC................	19	20	0.05	1	0	0	1	0	0	0
..........................................................................................................................................................................................................................TCCGCTATACAGTTGCCCTCGT....................	22	20	0.05	1	0	1	0	0	0	0
................................................................................................................................................................................TTGG--AGAAGGGGGATTGTAGTGCCT.........................................................	25	20	0.05	1	0	0	0	0	0	1
.......................................................................................................................................................................................GAAGGGGGATTGTAGTGCCAGATCC....................................................	25	20	0.05	1	0	0	0	0	0	1

dp5

TGCTTAGCT----TGCAGAGCTCGGAGGTGCGCTTCTTGTCCATGGTCAGCCATGTTTGCCGAGTTATGCGCCTTCGTGGCACTATTTGCCACATATCGTTTGTTATTCGC-TTGTATTGC-TCTTTTATAATAAGCTTACAGGTGGCCACTGGCATACAGATAT-CCTCCTTGTCTTGG--AGAAGGGGGATTGTAGTGCCAGATCTGGCCAGCTCGTCCGCTATACAGTTGCCCTCGATGTCCTGGTGGCCCGGGACC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...............................................................................................................................................................................................................................TATACAGTTGCCCTCGATGTCC...............	22	20	70.40	1408	0	1227	110	0	64	0	0	4	3	0
................................................................................................................................................................................TTGG--AGAAGGGGGATTGTAGTGC...........................................................	23	20	49.85	997	0	17	3	0	3	0	3	971	0	0
...............................................................................................................................................................................................................................TATACAGTTGCCCTCGATGTC................	21	20	44.10	882	0	739	51	0	81	1	9	0	1	0
............................................................................................................................................................................TGTCTTGG--AGAAGGGGGATTGTAG..............................................................	24	20	36.05	721	0	34	0	0	0	0	0	625	62	0
..............................................................................................................................................................................................................................CTATACAGTTGCCCTCGATGTCC...............	23	20	30.25	605	0	508	58	1	28	0	1	9	0	0
.................................................................................................................................................................................TGG--AGAAGGGGGATTGTAGTGC...........................................................	22	20	27.65	553	0	0	0	0	1	0	3	480	69	0
..............................................................................................................................................................................................................................CTATACAGTTGCCCTCGATGTC................	22	20	19.20	384	0	314	31	0	37	0	2	0	0	0
...........................................................................................................................................................................TTGTCTTGG--AGAAGGGGGATTGTAG..............................................................	25	20	16.65	333	0	10	0	0	0	0	0	290	33	0
..............................................................................................................................................................................TCTTGG--AGAAGGGGGATTGTAGTGC...........................................................	25	20	16.50	330	0	35	4	0	2	0	2	261	26	0
................................................................................................................................................................................TTGG--AGAAGGGGGATTGTAGT.............................................................	21	20	16.45	329	0	21	2	0	0	0	0	249	57	0
................................................................................................................................................................................TTGG--AGAAGGGGGATTGTAG..............................................................	20	20	13.30	266	0	21	0	0	1	0	0	244	0	0
...............................................................................................................................................................................................................................TATACAGTTGCCCTCGATGT.................	20	20	12.80	256	0	228	13	0	8	1	6	0	0	0
...............................................................................................................................................................................................................................TATACAGTTGCCCTCGATGTCCT..............	23	1	9.00	9	0	7	2	0	0	0	0	0	0	0
..................................................................................................................................................................................GG--AGAAGGGGGATTGTAGTGC...........................................................	21	20	8.80	176	0	21	2	0	0	0	0	129	24	0
................................................................................................................................................................................TTGG--AGAAGGGGGATTGTAGTG............................................................	22	20	8.05	161	0	19	2	0	2	0	0	127	10	1
...............................................................................................................................................................................................................................TATACAGTTGCCCTCGATG..................	19	20	7.90	158	0	150	3	0	5	0	0	0	0	0
................................................................................................................................................................................TTGG--AGAAGGGGGATTGTAGTGCCAG........................................................	26	20	7.85	157	0	0	0	0	0	0	0	139	18	0
.................................................................................................................................................................................TGG--AGAAGGGGGATTGTAGTGCC..........................................................	23	20	7.80	156	0	11	1	0	0	0	0	108	36	0
................................................................................................................................................................................TTGG--AGAAGGGGGATTGTAGTGCC..........................................................	24	20	7.20	144	0	14	1	0	0	0	0	102	27	0
..............................................................................................................................................................................................................................CTATACAGTTGCCCTCGATGT.................	21	20	6.85	137	0	117	8	0	10	0	0	2	0	0
..............................................................................................................................................................................TCTTGG--AGAAGGGGGATTGTAGT.............................................................	23	20	6.70	134	1	16	0	0	0	0	0	101	16	0
.................................................................................................................................................................................TGG--AGAAGGGGGATTGTAGTG............................................................	21	20	6.30	126	0	14	0	0	2	0	1	93	16	0
.................................................................................................................................................................................TGG--AGAAGGGGGATTGTAGTGCCA.........................................................	24	20	6.15	123	0	4	0	0	0	0	1	68	50	0
.................................................................................................................................................................................TGG--AGAAGGGGGATTGTAGT.............................................................	20	20	5.80	116	0	13	0	0	0	0	0	75	28	0
.................................................................................................................................................................................TGG--AGAAGGGGGATTGTAG..............................................................	19	20	5.10	102	0	15	0	0	0	0	0	80	7	0
.................................................................................................................................................................................TGG--AGAAGGGGGATTGTAGTGCCAGA.......................................................	26	20	4.60	92	0	9	0	0	0	0	1	65	17	0
............................................................................................................................................................................TGTCTTGG--AGAAGGGGGATTGTAGT.............................................................	25	20	4.25	85	0	2	1	0	0	0	0	75	7	0
....................................................................................................................................................................T-CCTCCTTGTCTTGG--AGAAGGG.......................................................................	22	20	4.10	82	0	81	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................CTATACAGTTGCCCTCGATGTCCT..............	24	1	4.00	4	0	2	2	0	0	0	0	0	0	0
................................................................................................................................................................................TTGG--AGAAGGGGGATTGTAGTGCCAGA.......................................................	27	20	3.95	79	0	0	0	0	0	0	0	49	30	0
..............................................................................................................................................................................TCTTGG--AGAAGGGGGATTGTAGTG............................................................	24	20	3.85	77	0	32	0	0	0	0	1	44	0	0
................................................................................................................................................................................................................................ATACAGTTGCCCTCGATGTCC...............	21	20	3.85	77	0	76	0	0	0	0	1	0	0	0
......................................................................................................................................................................................AGAAGGGGGATTGTAGTGCC..........................................................	20	20	3.75	75	0	41	0	0	0	0	2	32	0	0
..........................................................................................................................................................................................................................TCCGCTATACAGTTGCCCTCGATG..................	24	20	3.75	75	0	75	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................TGCCAGATCTGGCCAGCTCGTCCGC.....................................	25	20	3.60	72	0	68	2	0	0	0	2	0	0	0
................................................................................................................................................................................TTGG--AGAAGGGGGATTGTAGTGCCA.........................................................	25	20	3.50	70	0	9	0	0	0	0	1	0	60	0
........................................................................................................................................................................TCCTTGTCTTGG--AGAAGGGG......................................................................	20	20	3.45	69	0	67	1	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................CTATACAGTTGCCCTCGATG..................	20	20	3.45	69	0	64	2	0	3	0	0	0	0	0
...........................................................................................................................................................................................GGGGATTGTAGTGCCAGATCTGGCCAG..............................................	27	20	3.30	66	0	6	0	0	0	0	0	43	17	0
...............................................................................................................................................................................................................................TATACAGTTGCCCTCGATGTCCTGG............	25	1	3.00	3	0	3	0	0	0	0	0	0	0	0
..............................................................................................................................................................................TCTTGG--AGAAGGGGGATTGTAG..............................................................	22	20	2.65	53	0	24	0	0	0	0	2	0	27	0
...........................................................................................................................................................................................GGGGATTGTAGTGCCAGATCTGGCC................................................	25	20	2.60	52	0	5	0	0	0	0	0	45	2	0
.......................................................................................................................................................................................GAAGGGGGATTGTAGTGCCAGATC.....................................................	24	20	2.60	52	0	6	0	0	0	0	0	32	14	0
...............................................................................................................................................................................CTTGG--AGAAGGGGGATTGTAGTGC...........................................................	24	20	2.55	51	0	4	0	0	0	0	0	43	4	0
....TAGCT----TGCAGAGCTCGGAGGTGC.....................................................................................................................................................................................................................................	23	7	2.43	17	0	5	1	0	0	0	0	9	2	0
...........................................................................................................................................................................................GGGGATTGTAGTGCCAGATCTGGCCA...............................................	26	20	2.30	46	0	6	0	0	0	0	0	40	0	0
....TAGCT----TGCAGAGCTCGGAGGTGCGC...................................................................................................................................................................................................................................	25	7	2.29	16	0	5	0	0	0	0	1	9	1	0
................................................................................................................................................................................TTGG--AGAAGGGGGATTGTAGAA............................................................	22	20	2.20	44	0	0	0	0	0	0	0	42	2	0
...................................................................................................................................................................................................TAGTGCCAGATCTGGCCAGCTCGTC........................................	25	20	2.15	43	0	38	0	0	0	0	1	2	2	0
............................................................................................................................................................TACAGATAT-CCTCCTTGTCTTGG--A.............................................................................	24	20	2.15	43	0	36	3	0	0	0	0	0	4	0
......................................................................................................................................................................................................TGCCAGATCTGGCCAGCTCGTCCG......................................	24	20	2.10	42	0	39	0	0	1	0	2	0	0	0
...............................................................................................................................................................................................................................TATACAGTTGCCCTCGATGTCCA..............	23	20	2.05	41	0	37	0	0	0	0	0	4	0	0
......................................................................................................................................................................................................TGCCAGATCTGGCCAGCTCGTCC.......................................	23	20	2.05	41	0	37	1	0	0	0	2	0	1	0
................................................................................................................................................................................TTGG--AGAAGGGGGATTGTAGA.............................................................	21	20	2.05	41	0	0	1	0	0	0	0	40	0	0
...........................................................................................................................................................................................GGGGATTGTAGTGCCAGATCTGG..................................................	23	20	2.00	40	0	20	0	0	1	0	1	16	2	0
......................................................................................................................................................................................................TGCCAGATCTGGCCAGCTCGTC........................................	22	20	1.95	39	0	32	1	0	0	0	1	5	0	0
..................................................................................................................................................................TAT-CCTCCTTGTCTTGG--AGAAGGGG......................................................................	25	20	1.90	38	0	37	1	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................TACAGTTGCCCTCGATGTCC...............	20	20	1.85	37	0	37	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................TGCCAGATCTGGCCAGCTCGTCCGCT....................................	26	20	1.75	35	0	33	0	0	0	0	2	0	0	0
..................................................................................................................................................................................GG--AGAAGGGGGATTGTAGTGCCAG........................................................	24	20	1.70	34	0	3	0	0	0	0	0	25	6	0
................................................................................................................................................................................................................................ATACAGTTGCCCTCGATGTC................	20	20	1.70	34	0	34	0	0	0	0	0	0	0	0
............................................................................................................................................................................TGTCTTGG--AGAAGGGGGATTGTAGA.............................................................	25	20	1.65	33	0	3	0	0	0	0	0	30	0	0
....................................................................................................................................................................T-CCTCCTTGTCTTGG--AGAAGG........................................................................	21	20	1.65	33	0	33	0	0	0	0	0	0	0	0
.............................................................................................................................................................................GTCTTGG--AGAAGGGGGATTGTAG..............................................................	23	20	1.60	32	0	6	0	0	0	0	0	23	3	0
......................................................................................................................................................................................AGAAGGGGGATTGTAGTGC...........................................................	19	20	1.55	31	0	0	0	0	0	0	0	31	0	0
......................................................................................................................................................................................AGAAGGGGGATTGTAG..............................................................	16	20	1.55	31	0	0	0	0	0	0	0	29	2	0
............................................................................................................................................................................TGTCTTGG--AGAAGGGGGATT..................................................................	20	20	1.55	31	0	30	0	0	0	0	1	0	0	0
..............................................................................................................................................................................TCTTGG--AGAAGGGGGATTGTAGA.............................................................	23	20	1.50	30	0	1	0	0	0	0	0	26	3	0
........................................................................................................................................................................TCCTTGTCTTGG--AGAAGGG.......................................................................	19	20	1.35	27	0	27	0	0	0	0	0	0	0	0
................................................................................................................................................................................TTGG--AGAAGGGGGATTGTAGTGA...........................................................	23	20	1.35	27	0	0	0	0	0	0	0	27	0	0
...............................................................................................................................................................................CTTGG--AGAAGGGGGATTGTAG..............................................................	21	20	1.30	26	0	5	0	0	0	0	0	21	0	0
..................................................................................................................................................................TAT-CCTCCTTGTCTTGG--AGAAGG........................................................................	23	20	1.30	26	0	24	2	0	0	0	0	0	0	0
...................................................................................................................................................................................G--AGAAGGGGGATTGTAGTGCC..........................................................	21	20	1.30	26	0	18	2	0	0	0	1	4	1	0
.........................................................................................................................................................................CCTTGTCTTGG--AGAAGGGG......................................................................	19	20	1.30	26	0	26	0	0	0	0	0	0	0	0
....TAGCT----TGCAGAGCTCGGAGGTG......................................................................................................................................................................................................................................	22	7	1.29	9	0	9	0	0	0	0	0	0	0	0
....TAGCT----TGCAGAGCTCGGAGG........................................................................................................................................................................................................................................	20	7	1.29	9	0	8	1	0	0	0	0	0	0	0
..................................................................................................................................................................................GG--AGAAGGGGGATTGTAGTG............................................................	20	20	1.25	25	0	0	0	0	0	0	0	18	7	0
......................................................................................................................................................................................................TGCCAGATCTGGCCAGCTCGT.........................................	21	20	1.20	24	0	22	0	0	2	0	0	0	0	0
...........................................................................................................................................................................TTGTCTTGG--AGAAGGGGGATT..................................................................	21	20	1.15	23	0	23	0	0	0	0	0	0	0	0
.................................................................................................................................................................................TGG--AGAAGGGGGATTGTAGTGT...........................................................	22	20	1.10	22	0	2	0	0	0	0	0	16	4	0
..................................................................................................................................................................TAT-CCTCCTTGTCTTGG--AGAAGGG.......................................................................	24	20	1.10	22	0	19	2	0	1	0	0	0	0	0
..............................................................................................................................................................................TCTTGG--AGAAGGGGGATTGTAGAA............................................................	24	20	1.10	22	0	2	0	0	0	0	0	19	1	0
...............................................................................................................................................................................CTTGG--AGAAGGGGGATTGTAGT.............................................................	22	20	1.05	21	0	3	0	0	0	0	0	13	5	0
..................................................................................................................................................................................GG--AGAAGGGGGATTGTAGT.............................................................	19	20	1.05	21	0	1	0	0	0	0	0	14	6	0
.........................................................................................................................................................................CCTTGTCTTGG--AGAAGGGGG.....................................................................	20	20	1.00	20	0	20	0	0	0	0	0	0	0	0
.......................................................................................TGCCACATATCGTTTGTTATTCGC-TTG.................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................TAAGCTTACAGGTGGCCACTGGCA........................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................CTATACAGTTGCCCTCGATGTCCTGG............	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................TCTTGG--AGAAGGGGGATTGTAGTGCC..........................................................	26	20	1.00	20	0	20	0	0	0	0	0	0	0	0
................................................................................................................TTGTATTGC-TCTTTTATAATAAGC...........................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................TTACAGGTGGCCACTGGCATACAGA..................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................TATTCGC-TTGTATTGC-TCTTTTATA.................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0
................................................................................................................................................................................................................................ATACAGTTGCCCTCGATGTCCT..............	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................TATACAGTTGCCCTCGATGTCA...............	22	20	1.00	20	0	19	0	0	1	0	0	0	0	0
.....................................................................................................................................AAGCTTACAGGTGGCCACTGGCA........................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................GTTATTCGC-TTGTATTGC-TCTTTTA...................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................ATACAGTTGCCCTCGATGTCCTGG............	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................TTACAGGTGGCCACTGGCATACAGATA................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................TGCCACATATCGTTTGTTATTCGC-T...................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................GCTTACAGGTGGCCACTGGC.........................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................................................................GG--AGAAGGGGGATTGTAGTGCC..........................................................	22	20	0.95	19	0	8	0	0	0	0	0	10	1	0
...................................................................................................................................................................................G--AGAAGGGGGATTGTAGTGC...........................................................	20	20	0.95	19	0	0	0	0	0	0	0	10	9	0
...............................................................................................................................................................................................................TGGCCAGCTCGTCCGCTATACAGT.............................	24	20	0.95	19	0	14	0	0	0	0	0	5	0	0
........................................................................................................................................................................TCCTTGTCTTGG--AGAAGGGGGATT..................................................................	24	20	0.95	19	0	19	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................CGCTATACAGTTGCCCTCGAT...................	21	20	0.95	19	0	19	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................GAAGGGGGATTGTAGTGCCAG........................................................	21	20	0.95	19	0	15	0	0	0	0	1	0	3	0
.................................................................................................................................................................................................................................TACAGTTGCCCTCGATGTC................	19	20	0.95	19	0	19	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................CTATACAGTTGCCCTCGATGTCA...............	23	20	0.90	18	0	17	0	0	1	0	0	0	0	0
...............................................................................................................................................................................................ATTGTAGTGCCAGATCTGGC.................................................	20	20	0.90	18	0	18	0	0	0	0	0	0	0	0
............................................................................................................................................................TACAGATAT-CCTCCTTGTCTTGG--..............................................................................	23	20	0.90	18	0	18	0	0	0	0	0	0	0	0
.................................................................................................................................................................................TGG--AGAAGGGGGATTGTAGTGCCT.........................................................	24	20	0.90	18	0	0	0	0	0	0	0	18	0	0
............................................................................................................................................................................................GGGATTGTAGTGCCAGATCTGGCCAGC.............................................	27	20	0.90	18	0	0	0	0	0	0	0	8	10	0
...............................................................................................................................................................................................ATTGTAGTGCCAGATCTGG..................................................	19	20	0.85	17	0	14	0	1	0	0	0	2	0	0
........................................................................................................................................................................TCCTTGTCTTGG--AGAAGGGGGA....................................................................	22	20	0.85	17	0	17	0	0	0	0	0	0	0	0
........................................................................................................................................................................TCCTTGTCTTGG--AGAAGGGGG.....................................................................	21	20	0.85	17	0	17	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................TATACAGTTGCCCTCGATGTCAA..............	23	20	0.85	17	0	17	0	0	0	0	0	0	0	0
..............................................................................................................................................................................TCTTGG--AGAAGGGGGATTGTAGTGCCA.........................................................	27	20	0.80	16	0	5	0	0	0	0	0	3	8	0
.................................................................................................................................................................................TGG--AGAAGGGGGATTGTAGTGCCAGAT......................................................	27	20	0.80	16	0	7	0	0	1	0	0	2	6	0
...........................................................................................................................................................................TTGTCTTGG--AGAAGGGGGAT...................................................................	20	20	0.80	16	0	16	0	0	0	0	0	0	0	0
..............................................................................................................................................................................TCTTGG--AGAAGGGGGATTGT................................................................	20	20	0.75	15	0	11	0	0	0	0	0	4	0	0
......................................................................................................................................................................................AGAAGGGGGATTGTAGTGCCAGA.......................................................	23	20	0.75	15	0	1	0	0	0	0	0	11	3	0
.......................................................................................................................................................................................................................TCGTCCGCTATACAGTTGCCCTCGATG..................	27	20	0.75	15	0	15	0	0	0	0	0	0	0	0
..............................................................................................................................................................CAGATAT-CCTCCTTGTCTTGG--..............................................................................	21	20	0.75	15	0	15	0	0	0	0	0	0	0	0
.................................................................................................................................................................................TGG--AGAAGGGGGATTGTAGA.............................................................	20	20	0.70	14	0	2	0	0	0	0	0	11	1	0
.................................................................................................................................................................................TGG--AGAAGGGGGATTGTAGTGCCAG........................................................	25	20	0.70	14	0	0	0	0	0	0	0	0	14	0
..................................................................................................................................................................................GG--AGAAGGGGGATTGTAGTGCCA.........................................................	23	20	0.70	14	0	3	0	0	0	0	0	7	4	0
........................................................................................................................................................................TCCTTGTCTTGG--AGAAGGGGGATG..................................................................	24	20	0.70	14	0	14	0	0	0	0	0	0	0	0
..............................................................................................................................................................................TCTTGG--AGAAGGGGGATTGTAGAAA...........................................................	25	20	0.70	14	0	3	0	0	1	0	0	10	0	0
................................................................................................................................................................................................................................ATACAGTTGCCCTCGATG..................	18	20	0.70	14	0	14	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................GAAGGGGGATTGTAGTGCC..........................................................	19	20	0.65	13	0	6	0	0	0	0	0	6	0	1
......................................................................................................................................................................................................TGCCAGATCTGGCCAGCTCGTCCGCTA...................................	27	20	0.65	13	0	13	0	0	0	0	0	0	0	0
...........................................................................................................................................................................TTGTCTTGG--AGAAGGGGGATTGTAGA.............................................................	26	20	0.65	13	0	0	0	0	0	0	0	13	0	0
..........................................................................................................................................................................................................................TCCGCTATACAGTTGCCCTCG.....................	21	20	0.65	13	0	13	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................GGGGATTGTAGTGCCAGATCTGGC.................................................	24	20	0.65	13	0	9	0	0	0	0	0	0	4	0
.....................................................................................................................................................................................................GTGCCAGATCTGGCCAGCTCG..........................................	21	20	0.65	13	0	13	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................TGCCAGATCTGGCCAGCTCG..........................................	20	20	0.65	13	0	13	0	0	0	0	0	0	0	0
.........................................................................................................................................................................CCTTGTCTTGG--AGAAGGGGGATTG.................................................................	24	20	0.65	13	0	13	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................GGATTGTAGTGCCAGATCTG...................................................	20	20	0.60	12	0	12	0	0	0	0	0	0	0	0
............................................................................................................................................................................TGTCTTGG--AGAAGGGGGATTGTA...............................................................	23	20	0.60	12	0	11	0	0	0	0	0	1	0	0
............................................................................................................................................................TACAGATAT-CCTCCTTGTCTTG.................................................................................	22	20	0.60	12	0	12	0	0	0	0	0	0	0	0
...............................................................................................................................................................................CTTGG--AGAAGGGGGATTGTAGTG............................................................	23	20	0.60	12	0	2	0	0	0	0	0	9	1	0
..............................................................................................................................................................................TCTTGG--AGAAGGGGGATTG.................................................................	19	20	0.60	12	0	12	0	0	0	0	0	0	0	0
...................................................................................................................................................................................G--AGAAGGGGGATTGTAGTGCCAGATC.....................................................	26	20	0.60	12	0	6	0	0	0	0	0	3	3	0
...........................................................................................................................................................................................GGGGATTGTAGTGCCAGATCTG...................................................	22	20	0.60	12	0	11	0	0	0	0	0	1	0	0
...............................................................................................................................................................................................................TGGCCAGCTCGTCCGCTATACAG..............................	23	20	0.60	12	0	10	1	0	1	0	0	0	0	0
..................................................................................................................................................................................GG--AGAAGGGGGATTGTAGTGCCAGAT......................................................	26	20	0.60	12	0	0	1	0	0	0	0	10	1	0
..................................................................................................................................................................................GG--AGAAGGGGGATTGTAGTGCCAGATC.....................................................	27	20	0.60	12	0	7	0	1	0	0	1	0	3	0
...................................................................................................................................................................................G--AGAAGGGGGATTGTAGTGCCAGA.......................................................	24	20	0.55	11	0	1	0	0	0	0	0	9	1	0
..............................................................................................................................................................................................GATTGTAGTGCCAGATCTGG..................................................	20	20	0.55	11	0	11	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................ACAGTTGCCCTCGATGTCC...............	19	20	0.55	11	0	11	0	0	0	0	0	0	0	0
............................................................................................................................................................TACAGATAT-CCTCCTTGTCTTGG--AGA...........................................................................	26	20	0.55	11	0	0	3	0	2	0	0	4	2	0
.........................................................................................................................................................................CCTTGTCTTGG--AGAAGGG.......................................................................	18	20	0.55	11	0	11	0	0	0	0	0	0	0	0
............................................................................................................................................................................................GGGATTGTAGTGCCAGATCTGGCCA...............................................	25	20	0.50	10	0	4	0	0	0	0	0	3	3	0
.............TGCAGAGCTCGGAGGTGCGCTTCT...............................................................................................................................................................................................................................	24	6	0.50	3	0	2	0	0	0	0	1	0	0	0
..................................................................................................................................................................................GG--AGAAGGGGGATTGTAGTGCCAGA.......................................................	25	20	0.50	10	0	2	0	0	0	0	0	0	8	0
...........................................................................................................................................................................TTGTCTTGG--AGAAGGGGGATTGTAGT.............................................................	26	20	0.50	10	0	0	0	0	0	0	0	7	3	0
...............................................................................................................................................................................................................................TATACAGTTGCCCTCGATGTA................	21	20	0.50	10	0	8	0	0	2	0	0	0	0	0
...........................................................................................................................................................................TTGTCTTGG--AGAAGGGGGATG..................................................................	21	20	0.50	10	0	10	0	0	0	0	0	0	0	0
.....................................TGTCCATGGTCAGCCATGTTTG.........................................................................................................................................................................................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.....................................TGTCCATGGTCAGCCATGTTTGCA.......................................................................................................................................................................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.....................................TGTCCATGGTCAGCCATGTTTGCCGA.....................................................................................................................................................................................................	26	2	0.50	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................AGAAGGGGGATTGTAGTGCCAGATC.....................................................	25	20	0.50	10	0	1	0	0	0	0	0	6	3	0
.........................................................................................................................................................................................................................GTCCGCTATACAGTTGCCCTCGATG..................	25	20	0.50	10	0	10	0	0	0	0	0	0	0	0
......................................................................................................................................................................CCTCCTTGTCTTGG--AGAAGGG.......................................................................	21	20	0.50	10	0	8	0	0	2	0	0	0	0	0
.......................................................................................................................................................................................................................................TGCCCTCGATGTCCTGGTGGC........	21	2	0.50	1	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................TATACAGTTGCCCTCGATGTCCAA.............	24	20	0.45	9	0	8	0	0	0	0	0	1	0	0
..............................................................................................................................................................................TCTTGG--AGAAGGGGGATTGTAGTAA...........................................................	25	20	0.45	9	0	0	1	0	0	0	0	8	0	0
........................................................................................................................................................................TCCTTGTCTTGG--AGAAGGGGGAT...................................................................	23	20	0.45	9	0	9	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................CCGCTATACAGTTGCCCTCGA....................	21	20	0.45	9	0	9	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................CCGCTATACAGTTGCCCTCGATG..................	23	20	0.45	9	0	9	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................GCTATACAGTTGCCCTCGATG..................	21	20	0.45	9	0	9	0	0	0	0	0	0	0	0
............................................................................................................................................................................TGTCTTGG--AGAAGGGGGATTGT................................................................	22	20	0.45	9	0	8	1	0	0	0	0	0	0	0
........................................................................................................................................................................TCCTTGTCTTGG--AGAAGGGA......................................................................	20	20	0.45	9	0	8	0	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................CTATACAGTTGCCCTCGATGTCCA..............	24	20	0.45	9	0	8	0	0	1	0	0	0	0	0
................................................................................................................................................................................TTGG--AGAAGGGGGATTGTAGTA............................................................	22	20	0.45	9	0	0	0	0	0	0	0	9	0	0
....TAGCT----TGCAGAGCTCGGAGGT.......................................................................................................................................................................................................................................	21	7	0.43	3	0	2	0	0	0	0	0	1	0	0
............................................................................................................................................................................................GGGATTGTAGTGCCAGATCTGGCC................................................	24	20	0.40	8	0	2	0	0	0	0	0	6	0	0
..........................................................................................................................................................................CTTGTCTTGG--AGAAGGGGGATT..................................................................	22	20	0.40	8	0	8	0	0	0	0	0	0	0	0
......................................................................................................................................................................................AGAAGGGGGATTGTAGTGCCA.........................................................	21	20	0.40	8	0	7	0	0	0	0	1	0	0	0
...............................................................................................................................................................................CTTGG--AGAAGGGGGATTGTAGA.............................................................	22	20	0.40	8	0	0	0	0	0	0	0	6	2	0
........................................................................................................................................................GGCATACAGATAT-CCTCCTTG......................................................................................	21	20	0.40	8	0	8	0	0	0	0	0	0	0	0
................................................................................................................................................................................TTGG--AGAAGGGGGATTGTAGTGCT..........................................................	24	20	0.40	8	0	0	0	0	0	0	0	8	0	0
..............................................................................................................................................................................................................................CTATACAGTTGCCCTCGAT...................	19	20	0.40	8	0	6	0	0	2	0	0	0	0	0
........................................................................................................................................................................TCCTTGTCTTGG--AGAAGG........................................................................	18	20	0.40	8	0	8	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................GAAGGGGGATTGTAGTGCCAGA.......................................................	22	20	0.40	8	0	3	0	0	0	0	0	0	5	0
........................................................................................................................................................................................................................CGTCCGCTATACAGTTGCCCTCGATG..................	26	20	0.40	8	0	8	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................GGGGATTGTAGTGCCAGATCT....................................................	21	20	0.40	8	0	8	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................GAAGGGGGATTGTAGTGCCA.........................................................	20	20	0.40	8	0	0	0	0	0	0	3	3	2	0
.............TGCAGAGCTCGGAGGTGCGCT..................................................................................................................................................................................................................................	21	8	0.38	3	0	3	0	0	0	0	0	0	0	0
..............................................................................................................................................................................TCTTGG--AGAAGGGGGATTGTAAAA............................................................	24	20	0.35	7	0	7	0	0	0	0	0	0	0	0
................................................................................................................................................................................TTGG--AGAAGGGGGATTGTAGTT............................................................	22	20	0.35	7	0	0	0	0	0	0	0	5	2	0
............................................................................................................................................................TACAGATAT-CCTCCTTGTCTT..................................................................................	21	20	0.35	7	0	7	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................ATACAGTTGCCCTCGATGT.................	19	20	0.35	7	0	7	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................GCCAGCTCGTCCGCTATACAG..............................	21	20	0.35	7	0	5	0	0	0	0	0	2	0	0
...........................................................................................................................................................................TTGTCTTGG--AGAAGGGGG.....................................................................	18	20	0.35	7	0	7	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................TATACAGTTGCCCTCGATGTCT...............	22	20	0.35	7	0	6	0	0	1	0	0	0	0	0
............................................................................................................................................................................................GGGATTGTAGTGCCAGATCTGG..................................................	22	20	0.35	7	0	3	0	0	0	0	0	3	1	0
..........................................................................................................................................................................................GGGGGATTGTAGTGCCAGATCTGGCC................................................	26	20	0.35	7	0	1	0	0	0	0	0	5	1	0
............................................................................................................................................................................................................................CGCTATACAGTTGCCCTCGATG..................	22	20	0.35	7	0	7	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................GATTGTAGTGCCAGATCTGGC.................................................	21	20	0.35	7	0	7	0	0	0	0	0	0	0	0
...........................................................................................................TCGC-TTGTATTGC-TCTTTTATAA................................................................................................................................	23	6	0.33	2	0	1	0	0	0	0	0	1	0	0
.......................................................................................................................................................................................GAAGGGGGATTGTAGTGCCAGAT......................................................	23	20	0.30	6	0	1	0	0	0	0	1	4	0	0
............................................................................................................................................................................................GGGATTGTAGTGCCAGATCTG...................................................	21	20	0.30	6	0	3	0	0	0	0	0	3	0	0
.........................................................................................................................................................GCATACAGATAT-CCTCCTTGT.....................................................................................	21	20	0.30	6	0	6	0	0	0	0	0	0	0	0
............................................................................................................................................................TACAGATAT-CCTCCTTGTCTTGG--AGAA..........................................................................	27	20	0.30	6	0	0	0	0	0	0	0	4	2	0
..........................................................................................................................................................................CTTGTCTTGG--AGAAGGGGG.....................................................................	19	20	0.30	6	0	5	0	0	0	0	1	0	0	0
...........................................................................................................................................................................................GGGGATTGTAGTGCCAGATCTGGCCAGC.............................................	28	20	0.30	6	0	6	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................GTCCGCTATACAGTTGCCCTC......................	21	20	0.30	6	0	6	0	0	0	0	0	0	0	0
............................................................................................................................................................................TGTCTTGG--AGAAGGGGGATTT.................................................................	21	20	0.30	6	0	6	0	0	0	0	0	0	0	0
..............................................................................................................................................................................TCTTGG--AGAAGGGGGATTGTAAA.............................................................	23	20	0.30	6	0	6	0	0	0	0	0	0	0	0
........................................................................................................................................................................................AAGGGGGATTGTAGTGCCAGATCTGGCC................................................	28	20	0.30	6	0	0	0	0	0	0	0	5	1	0
............................................................................................................................................................................TGTCTTGG--AGAAGGGGGATTGTAGTGC...........................................................	27	20	0.30	6	0	0	0	0	0	0	2	3	1	0
..........................................................................................................................................................CATACAGATAT-CCTCCTTGTCTTGG--A.............................................................................	26	20	0.30	6	0	5	1	0	0	0	0	0	0	0
......................................................................................................................................................................CCTCCTTGTCTTGG--AGAAGGGG......................................................................	22	20	0.30	6	0	6	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................TGTAGTGCCAGATCTGGCCAGCTCG..........................................	25	20	0.30	6	0	5	0	0	0	0	0	1	0	0
................................................................................................................................................................................................TTGTAGTGCCAGATCTGG..................................................	18	20	0.30	6	0	6	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................TGTAGTGCCAGATCTGGCCAGCTC...........................................	24	20	0.30	6	0	6	0	0	0	0	0	0	0	0
.............................................................................................................................................................................GTCTTGG--AGAAGGGGGATTGTAGT.............................................................	24	20	0.30	6	0	1	0	0	0	0	0	5	0	0
..............................................................................................................................................................................TCTTGG--AGAAGGGGGATTGTAGTGA...........................................................	25	20	0.30	6	0	1	0	0	0	0	0	5	0	0
...................................................................................................................................................................AT-CCTCCTTGTCTTGG--AGAAGGGG......................................................................	24	20	0.30	6	0	6	0	0	0	0	0	0	0	0
............................................................................................................................................................TACAGATAT-CCTCCTTGTCTTGG--AGAAG.........................................................................	28	20	0.25	5	0	1	0	0	0	0	1	3	0	0
..............................................................................................................................................................................TCTTGG--AGAAGGGGGATTGTAGTGT...........................................................	25	20	0.25	5	0	3	0	0	0	0	0	2	0	0
...........................................................................................................................................................................TTGTCTTGG--AGAAGGGGGATTGTA...............................................................	24	20	0.25	5	0	5	0	0	0	0	0	0	0	0
...TTAGCT----TGCAGAGCTCGGAGGTGCGC...................................................................................................................................................................................................................................	26	4	0.25	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................CTTGTCTTGG--AGAAGGGG......................................................................	18	20	0.25	5	0	5	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................TGGCCAGCTCGTCCGCTATACAGTTG...........................	26	20	0.25	5	0	5	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................GCTATACAGTTGCCCTCGATGTCC...............	24	20	0.25	5	0	4	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................................CCAGCTCGTCCGCTATACAG..............................	20	20	0.25	5	0	5	0	0	0	0	0	0	0	0
...TTAGCT----TGCAGAGCTCGGAGGTGC.....................................................................................................................................................................................................................................	24	4	0.25	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................GCCAGATCTGGCCAGCTCGTCCG......................................	23	20	0.25	5	0	5	0	0	0	0	0	0	0	0
...................................................................................................................................................................................G--AGAAGGGGGATTGTAGTGCCAGAT......................................................	25	20	0.25	5	0	1	0	0	0	0	0	4	0	0
...................................................................................................................................................................................................TAGTGCCAGATCTGGCCAGCTCGTCCGC.....................................	28	20	0.25	5	0	5	0	0	0	0	0	0	0	0
.........................................................................................................................................................GCATACAGATAT-CCTCCTTG......................................................................................	20	20	0.25	5	0	5	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................TAGTGCCAGATCTGGCCAGC.............................................	20	20	0.25	5	0	5	0	0	0	0	0	0	0	0
.......................................................................................................................................................TGGCATACAGATAT-CCTCCTTGTCT...................................................................................	25	20	0.25	5	0	5	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................CAGATCTGGCCAGCTCGTC........................................	19	20	0.25	5	0	5	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................TCTGGCCAGCTCGTCCGCTAT..................................	21	20	0.25	5	0	5	0	0	0	0	0	0	0	0
................................................................................................................................................................................TTGG--AGAAGGGGGATTGTAGTGCCT.........................................................	25	20	0.25	5	0	0	0	0	0	0	0	5	0	0
............................................................................................................................................................................................................................CGCTATACAGTTGCCCTCGA....................	20	20	0.25	5	0	5	0	0	0	0	0	0	0	0
.................................................................................................................................................................................TGG--AGAAGGGGGATTGTAGAA............................................................	21	20	0.25	5	0	0	0	0	0	0	0	0	5	0
...............................................................................................................................................................................................................................TATACAGTTGCCCTCGAT...................	18	20	0.25	5	0	5	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................GTAGTGCCAGATCTGGCCAGC.............................................	21	20	0.25	5	0	5	0	0	0	0	0	0	0	0
TGCTTAGCT----TGCAGAGCTCGGAGG........................................................................................................................................................................................................................................	24	4	0.25	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................TCGTCCGCTATACAGTTGCCCTCG.....................	24	20	0.25	5	0	5	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................TCCGCTATACAGTTGCCCTCGT....................	22	20	0.25	5	0	4	0	0	0	0	1	0	0	0
.............TGCAGAGCTCGGAGGTGCGC...................................................................................................................................................................................................................................	20	9	0.22	2	0	1	0	0	0	1	0	0	0	0
................................................................................CACTATTTGCCACATATCGTTTGT............................................................................................................................................................	24	9	0.22	2	0	0	0	0	0	0	0	2	0	0
.............TGCAGAGCTCGGAGGTGC.....................................................................................................................................................................................................................................	18	9	0.22	2	1	0	0	0	0	0	0	1	0	0
....................................................................................................................................................................................................................AGCTCGTCCGCTATACAGTTG...........................	21	20	0.20	4	0	1	0	0	0	0	0	3	0	0
.................................................................................................................................................................ATAT-CCTCCTTGTCTTGG--AGA...........................................................................	21	20	0.20	4	0	4	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................TCGTCCGCTATACAGTTGCC.........................	20	20	0.20	4	0	3	0	0	1	0	0	0	0	0
.............................................................................................................................................................................................................TCTGGCCAGCTCGTCCGCTATACAGT.............................	26	20	0.20	4	0	4	0	0	0	0	0	0	0	0
...............................................................................................................................................................................CTTGG--AGAAGGGGGATTGTAGTGCCA.........................................................	26	20	0.20	4	0	0	0	0	0	0	0	3	1	0
.......................................................................................................................................................................................................................TCGTCCGCTATACAGTTGCCCTCGA....................	25	20	0.20	4	0	4	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................TGGCCAGCTCGTCCGCTATACAGTTGC..........................	27	20	0.20	4	0	3	0	0	0	0	1	0	0	0
.......................................................................................................................................................................................................GCCAGATCTGGCCAGCTCGTCC.......................................	22	20	0.20	4	0	4	0	0	0	0	0	0	0	0
................................................................................................................................................................................TTGG--AGAAGGGGGATTGTAGTGTA..........................................................	24	20	0.20	4	0	0	0	0	0	0	0	4	0	0

droGri2

GACTTAGAT----TGCACAGCTCTCTGCTGCGCTTGGAGTTAAGAATAGGCCATGTCTGGTGTGCTATGCGGGCACAGGTGGCACTTTGCCATTTACTGCATGACCTGCGC-CTGTACTCC-TCTTTGATGTTGAGCTTGCAGGTAGCTAGAGGCATACTTATAC-CTTCCTTATCCGCG--AGGAGTGGTAGTATAGTACCTTTCCTAGCTAGCTCATCGGCTTTACAGTTGCCTTCAATGTCCTGGTGGCCAGGGACC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.................................................................................................TGCATGACCTGCGC-CTGTACT.............................................................................................................................................	21	20	0.05	1	0	1
.....................................................TGTCTGGTGTGCTATGCGGGCACAGG.....................................................................................................................................................................................	26	20	0.05	1	1	0
...................................................................................................................................................................................................................TAGCTCATCGGCTTTACAGT.............................	20	20	0.05	1	1	0

droAna3

GGTCTGGTGAGAGCAATAAGCCTCGCCGATCTTTTCCGAGAGCGTGTCGGCCAGATCAGACGAGATGTTCTACAGGTCTGGAGATTACTCCATTTCCTATTTGCTGCCAGG-TCGAAAAAC-TCCCTGCACTTTAGCCTGCAAGTAGCCAAGGGTATGCCTACAA-GTTCTTTCTCCGGT--AGGAGAGGGTTGGTAGTTCCTGCCCTGGCTAGTTCATCTGCAGCACAGTTTCCCTCGTGGTCCCTGTGACCGGGAACC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..................................................................................................................................................................................................................CTAGTTCATCTGCAGCACAGTTTCCC........................	26	20	10.55	211	211	0	0	0	0	0
..........................................................................................................................TCCCTGCACTTTAGCCTGCAAGTAGCC...............................................................................................................	27	20	5.70	114	0	114	0	0	0	0
................................................................................................................................CACTTTAGCCTGCAAGTAGCCAAGG...........................................................................................................	25	20	2.85	57	57	0	0	0	0	0
.....................................................................CTACAGGTCTGGAGATTACTCCATT......................................................................................................................................................................	25	20	1.45	29	24	5	0	0	0	0
.....................................................................CTACAGGTCTGGAGATTACTCCATTTC....................................................................................................................................................................	27	20	1.25	25	5	20	0	0	0	0
..................................................................................................................................................................................................................CTAGTTCATCTGCAGCACAGTTTCCCTC......................	28	20	1.15	23	23	0	0	0	0	0
................................................................................................................................CACTTTAGCCTGCAAGTAGCCAAG............................................................................................................	24	20	0.90	18	13	0	5	0	0	0
.................................................................TGTTCTACAGGTCTGGAGATTACTCCAT.......................................................................................................................................................................	28	20	0.75	15	15	0	0	0	0	0
.................................................................TGTTCTACAGGTCTGGAGATTACTCCA........................................................................................................................................................................	27	20	0.60	12	12	0	0	0	0	0
..................................TCCGAGAGCGTGTCGGCCAGATC...........................................................................................................................................................................................................	23	7	0.57	4	1	3	0	0	0	0
..................................TCCGAGAGCGTGTCGGCCAGATCA..........................................................................................................................................................................................................	24	7	0.57	4	2	2	0	0	0	0
.................................................................TGTTCTACAGGTCTGGAGATTACTCC.........................................................................................................................................................................	26	20	0.50	10	0	10	0	0	0	0
.............................................................................................................................CTGCACTTTAGCCTGCAAGTAGC................................................................................................................	23	20	0.45	9	0	9	0	0	0	0
............................................................................................TTTCCTATTTGCTGCCAGG-TCG.................................................................................................................................................	22	5	0.40	2	2	0	0	0	0	0
..................................................................................................................................................................................................................CTAGTTCATCTGCAGCACAGTTTCCCTCG.....................	29	20	0.40	8	8	0	0	0	0	0
..................................TCCGAGAGCGTGTCGGCCAGATCAGACG......................................................................................................................................................................................................	28	5	0.40	2	2	0	0	0	0	0
.................................................................................................TATTTGCTGCCAGG-TCGAAAAAC-TCC.......................................................................................................................................	26	5	0.40	2	0	2	0	0	0	0
..........................................................................................................................................................TATGCCTACAA-GTTCTTTCTCCGGT--A.............................................................................	26	20	0.30	6	5	1	0	0	0	0
................................................................................................................TCGAAAAAC-TCCCTGCACTTTAGCCTGC.......................................................................................................................	28	20	0.30	6	6	0	0	0	0	0
.......................................................................................................................................................................................................................TCATCTGCAGCACAGTTTCCCTCGTGG..................	27	20	0.30	6	6	0	0	0	0	0
......................................................................TACAGGTCTGGAGATTACTCCATTT.....................................................................................................................................................................	25	20	0.25	5	5	0	0	0	0	0
................................................................................................................................................TAGCCAAGGGTATGCCTACAA-GTTCT.........................................................................................	26	20	0.25	5	4	0	0	0	1	0
..............................................................................................TCCTATTTGCTGCCAGG-TCGAAAAAC-..........................................................................................................................................	26	5	0.20	1	1	0	0	0	0	0
...................................................................................................TTTGCTGCCAGG-TCGAAAAAC-TCCCT.....................................................................................................................................	26	5	0.20	1	0	1	0	0	0	0
...............................................................GATGTTCTACAGGTCTGGAGATTAC............................................................................................................................................................................	25	20	0.20	4	4	0	0	0	0	0
.................................................................................................TATTTGCTGCCAGG-TCGAAAA.............................................................................................................................................	21	5	0.20	1	1	0	0	0	0	0
....................................CGAGAGCGTGTCGGCCAGATCAGAC.......................................................................................................................................................................................................	25	5	0.20	1	1	0	0	0	0	0
..........................................................................................................................................................TATGCCTACAA-GTTCTTTCTCCGG.................................................................................	24	20	0.20	4	4	0	0	0	0	0
..................................TCCGAGAGCGTGTCGGCCAGATCAGA........................................................................................................................................................................................................	26	5	0.20	1	0	1	0	0	0	0
............................................................................................................................................................TGCCTACAA-GTTCTTTCTCCGGT--AGGAGA........................................................................	29	20	0.20	4	0	4	0	0	0	0
..................................TCCGAGAGCGTGTCGGCCAGATCAGAC.......................................................................................................................................................................................................	27	5	0.20	1	1	0	0	0	0	0
..............................................................................................................................TGCACTTTAGCCTGCAAGTAGCCAAGGG..........................................................................................................	28	20	0.20	4	0	4	0	0	0	0
.................................TTCCGAGAGCGTGTCGGCCAGATCAGA........................................................................................................................................................................................................	27	5	0.20	1	1	0	0	0	0	0
..........................................................................................................................................................TATGCCTACAA-GTTCTTTCTCCGGT--AG............................................................................	27	20	0.20	4	4	0	0	0	0	0
..................................TCCGAGAGCGTGTCGGCCAGATCAG.........................................................................................................................................................................................................	25	5	0.20	1	1	0	0	0	0	0
.............................................................GAGATGTTCTACAGGTCT.....................................................................................................................................................................................	18	6	0.17	1	0	1	0	0	0	0
..................................................................................................................................................................................GT--AGGAGAGGGTTGGTAGTTC...........................................................	21	6	0.17	1	0	1	0	0	0	0
........................................................................................TCCATTTCCTATTTGCTGCCAGG-TC..................................................................................................................................................	25	6	0.17	1	0	1	0	0	0	0
......................TCGCCGATCTTTTCCGAGAGCGTGTC....................................................................................................................................................................................................................	26	6	0.17	1	1	0	0	0	0	0
...............................................................................................................................................................CTACAA-GTTCTTTCTCCGGT--AGGA..........................................................................	24	20	0.15	3	0	0	3	0	0	0
..........................................................................................................................................................................................................................TCTGCAGCACAGTTTCCCTCGTGG..................	24	20	0.15	3	0	3	0	0	0	0
..............................................................................................................................................................................TCCGGT--AGGAGAGGGTTGGTA...............................................................	21	20	0.15	3	2	1	0	0	0	0
..........................................................................................................................................................................................................................TCTGCAGCACAGTTTCCCTCGTGGTCC...............	27	20	0.15	3	0	3	0	0	0	0
.................................................................................................................CGAAAAAC-TCCCTGCACTTTAGCCTGC.......................................................................................................................	27	20	0.15	3	0	3	0	0	0	0
........................................................................................................................C-TCCCTGCACTTTAGCCTGCAAGTAGC................................................................................................................	27	20	0.15	3	0	3	0	0	0	0
.................................................................TGTTCTACAGGTCTGGAGATTAC............................................................................................................................................................................	23	20	0.15	3	3	0	0	0	0	0
................................TTTCCGAGAGCGTGTCGGCCAGATCA..........................................................................................................................................................................................................	26	7	0.14	1	0	1	0	0	0	0
........................GCCGATCTTTTCCGAGAGC.........................................................................................................................................................................................................................	19	7	0.14	1	0	0	0	0	1	0
..................................TCCGAGAGCGTGTCGGCCAGA.............................................................................................................................................................................................................	21	7	0.14	1	1	0	0	0	0	0
..........................................................................................................................................................................................................TGCCCTGGCTAGTTCATCTGCAG...................................	23	8	0.13	1	1	0	0	0	0	0
........................................................................................................................................................................................................................CATCTGCAGCACAGTTTCCCTCGTG...................	25	20	0.10	2	2	0	0	0	0	0
..............................................................................................................................................................................TCCGGT--AGGAGAGGGTTGGTAG..............................................................	22	20	0.10	2	1	0	1	0	0	0
..............................................................................................................................TGCACTTTAGCCTGCAAGTAGCCAAG............................................................................................................	26	20	0.10	2	0	2	0	0	0	0
.......................................GAGCGTGTCGGCCAGATCAGACGAG....................................................................................................................................................................................................	25	20	0.10	2	2	0	0	0	0	0
..........................................................................................................................................................TATGCCTACAA-GTTCTTTCTCCGGT--..............................................................................	25	20	0.10	2	2	0	0	0	0	0
......................................................................................................................AAC-TCCCTGCACTTTAGCCTGCAAG....................................................................................................................	25	20	0.10	2	1	1	0	0	0	0
...................................................................................................................................................................AA-GTTCTTTCTCCGGT--AGGAGAGG......................................................................	24	20	0.10	2	2	0	0	0	0	0
...............................................................................................................................................................CTACAA-GTTCTTTCTCCGGT--AGGAGAGGGT....................................................................	30	20	0.10	2	0	0	0	0	1	1
.................................................................TGTTCTACAGGTCTGGAGATTACTT..........................................................................................................................................................................	25	20	0.10	2	0	0	2	0	0	0
..................................................................................................................................................................CAA-GTTCTTTCTCCGGT--AGGAGAGG......................................................................	25	20	0.10	2	0	0	2	0	0	0
................................................................................................................................................................................................................................GCACAGTTTCCCTCGTGGTCCCTG............	24	20	0.05	1	1	0	0	0	0	0
...........................................................................................................................................................................TTCTCCGGT--AGGAGAGGGTTGG.................................................................	22	20	0.05	1	0	1	0	0	0	0
......................................................................................................................AAC-TCCCTGCACTTTAGCCTGCAAGT...................................................................................................................	26	20	0.05	1	0	0	1	0	0	0
.......................................GAGCGTGTCGGCCAGATCAG.........................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
...........................................................................................................................................................ATGCCTACAA-GTTCTTTCTCCGGT--AG............................................................................	26	20	0.05	1	1	0	0	0	0	0
..........................................................................................................................TCCCTGCACTTTAGCCTGCAAGTAGCCA..............................................................................................................	28	20	0.05	1	0	1	0	0	0	0
................................................................................................................................................TAGCCAAGGGTATGCCTACAA-GTTCC.........................................................................................	26	20	0.05	1	0	1	0	0	0	0
....................................................................TCTACAGGTCTGGAGATTACTCC.........................................................................................................................................................................	23	20	0.05	1	0	0	1	0	0	0
.........................................GCGTGTCGGCCAGATCAGAC.......................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
....................................................................................................................................TTAGCCTGCAAGTAGCCC..............................................................................................................	18	20	0.05	1	0	1	0	0	0	0
.................................................................TGTTCTACAGGTCTGGAGATTA.............................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0
........................................AGCGTGTCGGCCAGATCAGAC.......................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
............................................................................................................................................................................TCTCCGGT--AGGAGAGGGTTGGTAG..............................................................	24	20	0.05	1	0	1	0	0	0	0
.......................................................................................................................AC-TCCCTGCACTTTAGCCTGCAAG....................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
.............................................................................................................................................AAGTAGCCAAGGGTATGCCTA..................................................................................................	21	20	0.05	1	0	0	0	1	0	0
................................................................ATGTTCTACAGGTCTGGAGATTACTCCA........................................................................................................................................................................	28	20	0.05	1	1	0	0	0	0	0
..................................................................................................................................................................................................................CTAGTTCATCTGCAGCACAGTTTCCA........................	26	20	0.05	1	0	1	0	0	0	0
......................................................................................................................AAC-TCCCTGCACTTTAGCCTGT.......................................................................................................................	22	20	0.05	1	0	0	0	1	0	0
...............................................................................................................................................................CTACAA-GTTCTTTCTCCGGT--AGGAGAGC......................................................................	28	20	0.05	1	1	0	0	0	0	0
.................................................................TGTTCTACAGGTCTGGAGATTACT...........................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
................................................................ATGTTCTACAGGTCTGGAGATTACT...........................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0
........................................................................................................................................................GGTATGCCTACAA-GTTCTTTCTCCG..................................................................................	25	20	0.05	1	1	0	0	0	0	0
...................................................................TTCTACAGGTCTGGAGATTACTCCAT.......................................................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0
...............................................................GATGTTCTACAGGTCTGGAGATTACT...........................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
........................................................................................................................................................GGTATGCCTACAA-GTTCTTTCTCCGG.................................................................................	26	20	0.05	1	1	0	0	0	0	0
..........................................................................................................CCAGG-TCGAAAAAC-TCCCTG....................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
.................................................................TGTTCTACAGGTCTGGAGAT...............................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
......................................................................................................................................................................................................................TTCATCTGCAGCACAGTTTCCCTCGTG...................	27	20	0.05	1	0	1	0	0	0	0
......................................................................TACAGGTCTGGAGATTACTCC.........................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
......................................................................TACAGGTCTGGAGATTACT...........................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0
...............................................................................................................................................................CTACAA-GTTCTTTCTCCGGT--AGGAGAGGG.....................................................................	29	20	0.05	1	0	0	0	0	0	1
......................................................................................................................................AGCCTGCAAGTAGCCAAGGG..........................................................................................................	20	20	0.05	1	0	0	0	0	0	1
.....................................................................................................................................................................................................................................GTTTCCCTCGTGGTCCCTGTGACCGGGA...	28	20	0.05	1	0	1	0	0	0	0
.....................................................................................................................................................AAGGGTATGCCTACAA-GTTCTTTCTCC...................................................................................	27	20	0.05	1	1	0	0	0	0	0
...............................................................................................................................................................CTACAA-GTTCTTTCTCCGGT--AGGAGA........................................................................	26	20	0.05	1	1	0	0	0	0	0
............................................................................................................................................................TGCCTACAA-GTTCTTTCTCCGGT--A.............................................................................	24	20	0.05	1	0	1	0	0	0	0
..................................................................GTTCTACAGGTCTGGAGATT..............................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
..............................................................................................................................................................................TCCGGT--AGGAGAGGGTTGG.................................................................	19	20	0.05	1	0	0	1	0	0	0
.......................................................................................................................................................................................................................TCATCTGCAGCACAGTTTCCCTC......................	23	20	0.05	1	0	1	0	0	0	0
................................................................................................................................................................TACAA-GTTCTTTCTCCGGT--AGGAGA........................................................................	25	20	0.05	1	0	0	0	0	1	0
.......................................................................................................................................................................................................................TCATCTGCAGCACAGTTTCCC........................	21	20	0.05	1	1	0	0	0	0	0
..........................................................................................................................................TGCAAGTAGCCAAGGGTATGCCTAC.................................................................................................	25	20	0.05	1	0	1	0	0	0	0
...................................................................TTCTACAGGTCTGGAGATTACTCC.........................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
..................................................................GTTCTACAGGTCTGGAGATTACT...........................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0

droBip1

TGCCTATTCAGGGCGATGAGCATCATTGACCTCTTCCTAGATCGGATTGGCCATATCATGCGGGAGTTCCTGCAGTTTTGGAGGTTTCTCCATTTCCGCAGTGATGCGCGG-TCAAAGTGA-TCCCTGCATTTTAGCCTACACGTAGCTAAGGGGATACCTACTG-GTTCCTTCTCCGGT--AGGAGAGGATTGGTAGTACCTGCTCTTGCTAGTTCGTCGGCGGCGCAGTTACCCTCGTGGTCCCTATGCCCGGGCACC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TGCTCTTGG----AGATCAGTTGCGCGGTTCGCTTCTTATTGAATTCTGGCCAGCATAGTTTCGATCTTCTGTGCTCTGCCTTCGTCGACCATTCCTTGCTGGCTAGTTGT-TTGAAATGG-TCATGAAT-TTCCGTCTGGACCGAGTTCAGGGAGATCTGGATG-T------CTGTTGTCGCTGAG-TGTTCTACTGACCCTTTTCTGGCCAGCTCGTCTGCTTTCTCGTTTCCGTCTATGTCATTGTGTCCGGGTACC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GGTTTAGCT----TTGGAAGTTCAGAAGTTCTCTTCGCATTAATAATTGGCCATGTCTGGAGAGAGATGCGACAATGTCTTACGTTTGTCCATGCTGGGCTCGCAAGTTCT-TTATATTTG-TTTTTAATGTTTAGCTTGCAGGTGGCCATCGGCATACCAATGT-TCTCCTTGTCCGGA--AGGAGGGGAACGTAAGTGCCATGCCTGGCCAACTCATCTGCAATACAATTGCCTGCAATGTTTCGGTGCCCCGGGACC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GGCTGAAAT----TGAGTAGTTCTGATGTTTTCTTATTGTTTATTACAGGCCATGTCTGGTGAGAGATTCGGCATTGCGGTGTGTTTTGCCAATAGGTGTTGGCTAATTTGCTGAAATTGGTTTTTTAATAATTAGCTTGCAAGTAGCCATAGGCATGCCGACATTTCTCCTTTCCTGGA--AGGAGAGGAATGGTGGTGCCTTTCCTGGCTAGCTGGTCTGCTATACAGTTGCCTACGATATCCCGGTGACCCGGAACC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GGCTGAGTT----TGAAGAGTTCCGAAGTTTTTT-ACTGTTAATTACAGGCCATGTCTGGTAAGAGATACGGAACTGTGGTGCGTTTTGCTAATGAGTGTTGGCTAGTTTG-TGAAAATAG-ATTCTGATATTTAGCTTGCAAAATGCTAGGGGCATGCCGAAAT-TCTCATTTTTTGTT--AGAAGAGGCATGATGGTGCCCAGCTTGGCTGACTCGTCCGCTATTTAGTTGCCTACGATGTGCCGATGATCCGGATCT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GGCTGAAAT----TAAGTAGTTCTGATGTTTTCTTATTGTTTATTGCAGGCCATGTCTGGTGAGAGATTCGGCACTGCGGTGTGTTTTGCCACTGAGTGTTGGCTAATTTG-CTAAAATGG-CTTTTAATAATTAGCTTGCAGGTAGCCATAGGCATGCCAACAT-TCTCCTTTCCTGGA--AGGAGAGGTATGGTGGTGCCTTGCCTGGCTAGCTCGTCTGCTATACAGTTGCCTACGATATCCCGGTGACCCGGAACC	Size	Hit Count	Total Norm	Total
No Reads

droSim2

TGGTCAATC----TTAAAAGTTTTGACGTTCTCTTTAAGCTTATTTTTGGCCATATTTGGCGTGTTAGGCGACAGTGTGTGGTGTTTTCCCATATTGTCTGTTTGTTACGG-TTTAGGTTT-TCCCTAAGTAGTAGTTTACAAGTGGCTAAAGGCATACTCATGC-CCTCCATCTCTTGT--ATGAGTGGCGCGGTAGTGCCTTCTCGAGCTAGTTCATCTGCGATGCAGTTGCCTTCTATGTCCCTGTGTCCGGGTACC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.......................................................................................TCCCATATTGTCTGG..............................................................................................................................................................	15	17	0.06	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................TCCCATATTGTCTGGA.............................................................................................................................................................	16	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0

droYak3

TGGTCTATC----TTAAAAGTTTTGACGTTCTTTTTGAGCTTATTTTTGGCCATATTTGGCGTGTTAGGCGACAGTGTGTGGTGTTTTCCCATATTGTCTGTTTGTTACGG-TTTAGATTT-TCCCGAAGTAGTAGTTTACAAGTGGCTAAAGGCATACTCATGC-CCTCCATCTCTTGT--ATGAGTGGCGCGGTAGTGCCCTCTCGAGCTAGTTCATCTGCGATGCAGTTGCCTTCTATGTCCCTGTGTCCGGGTACC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
........................................................................................................................................................................TCCATCTCTTGT--ATGAGTGGCGCGG.................................................................	25	20	1.85	37	0	18	1	5	0	0	1	0	0	0	12
...................................................................................................................................................................................................................TAGTTCATCTGCGATGCAGTTGCCT........................	25	20	0.80	16	0	9	7	0	0	0	0	0	0	0	0
..................................................................................................................................TAGTAGTTTACAAGTGGCTAAAGGCA........................................................................................................	26	20	0.65	13	0	12	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................TTCATCTGCGATGCAGTTGCCTTCTATG..................	28	20	0.40	8	0	8	0	0	0	0	0	0	0	0	0
.......................................................................................TCCCATATTGTCTGTTTGTTACGG-TT..................................................................................................................................................	26	20	0.40	8	0	0	1	0	0	0	0	0	0	0	7
..........................................................................................................................................TACAAGTGGCTAAAGGCATACTCATG................................................................................................	26	20	0.30	6	0	6	0	0	0	0	0	0	0	0	0
..........................................................................................................................................TACAAGTGGCTAAAGGCATACTCATGC-..............................................................................................	27	20	0.25	5	0	4	1	0	0	0	0	0	0	0	0
..................................................................................................................................TAGTAGTTTACAAGTGGCTAAAGGC.........................................................................................................	25	20	0.20	4	0	4	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................TGCCTTCTATGTCCCTGTGTCCGGG....	25	20	0.20	4	0	4	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................AGTTCATCTGCGATGCAGTTGCCTT.......................	25	20	0.20	4	0	4	0	0	0	0	0	0	0	0	0
..........................................................GGCGTGTTAGGCGACAGTGTGTGGT.................................................................................................................................................................................	25	20	0.20	4	0	0	0	0	0	0	0	0	0	0	4
...................................................................................................................................................................................................TAGTGCCCTCTCGAGCTAGTTCATC........................................	25	13	0.15	2	0	1	0	1	0	0	0	0	0	0	0
.............................................TTTGGCCATATTTGGCGTGTTAGGC..............................................................................................................................................................................................	25	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................TCTCTTGT--ATGAGTGGCGCGGTAGTG............................................................	26	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................TGC-CCTCCATCTCTTGT--ATGAGTGGCGCGGT................................................................	31	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3
..........................................................................................................................................TACAAGTGGCTAAAGGCATACTCATGC-CC............................................................................................	29	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
.....................................................................................................................................TAGTTTACAAGTGGCTAAAGGCATA......................................................................................................	25	20	0.10	2	0	1	1	0	0	0	0	0	0	0	0
............................................................................................TATTGTCTGTTTGTTA........................................................................................................................................................	16	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2
..............................................................................................................................................................................................................CGAGCTAGTTCATCTGCGATGCAGT.............................	25	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
.........................................................TGGCGTGTTAGGCGACAGTGTGTGG..................................................................................................................................................................................	25	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
...............................................TGGCCATATTTGGCGTGTTAGGCGA............................................................................................................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2
............................................................................................................................................................................................................CTCGAGCTAGTTCATCTGCGATGCAGT.............................	27	20	0.10	2	0	1	1	0	0	0	0	0	0	0	0
..............................................................TGTTAGGCGACAGTGTGTGGTGT...............................................................................................................................................................................	23	20	0.10	2	0	1	1	0	0	0	0	0	0	0	0
.......................................................................................TCCCATATTGTCTGTTTGTTACGG-T...................................................................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2
......................................................................................................................................................................................................................................TTGCCTTCTATGTCCCTGTGTCCGGG....	26	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
..........................................................................................................................................TACAAGTGGCTAAAGGCATACTCAT.................................................................................................	25	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................TAGTTCATCTGCGATGCAGTTGCCTTC......................	27	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................TGC-CCTCCATCTCTTGT--ATGAGTGG......................................................................	25	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
.......................................................................ACAGTGTGTGGTGTTTTCCCATATT....................................................................................................................................................................	25	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................TCGAGCTAGTTCATCTGCGATGCAGT.............................	26	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
...............................................TGGCCATATTTGGCGTGTTAGGCGAC...........................................................................................................................................................................................	26	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................T--ATGAGTGGCGCGGTAGTGCCCT........................................................	23	11	0.09	1	0	0	0	0	0	0	1	0	0	0	0
....................TTTTGACGTTCTTTTTGAGCTTATA.......................................................................................................................................................................................................................	25	18	0.06	1	0	0	0	0	0	0	0	0	0	0	1
.......................................................................................................................................................................................................................TCATCTGCGATGCAGTTGCCTTCTATG..................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................TACAAGTGGCTAAAGGCATACTCATGC-C.............................................................................................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................TAGTTCATCTGCGATGCAGTTGCCTGG......................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................TAGTTCATCTGCGATGCAGTTGCC.........................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
............................................................CGTGTTAGGCGACAGTGTGTGG..................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................................AGTTCATCTGCGATGCAGTTGCCT........................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................ATACTCATGC-CCTCCATCTCTTGT--A.............................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................TACAAGTGGCTAAAGGCATACT....................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TTCTATGTCCCTGTGTCCGGGTACC	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................C-CCTCCATCTCTTGT--ATGAGTGGCGC...................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................TCTCGAGCTAGTTCATCTGCGATGCAGT.............................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................TGTTAGGCGACAGTGTGTGGTGTT..............................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................TGT--ATGAGTGGCGCGGTAGTG............................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................TGGCGTGTTAGGCGACAGTGTGTGGT.................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................GTTAGGCGACAGTGTGTGGTGTTT.............................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................GTAGTAGTTTACAAGTGGCTAAAG...........................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................TTCATCTGCGATGCAGTTGCCT........................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................GCGTGTTAGGCGACAGTGTGTGGT.................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1
....................................................................................................................................GTAGTTTACAAGTGGCTAAAGGCA........................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................TACAAGTGGCTAAAGGCATACTCAG.................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................GC-CCTCCATCTCTTGT--ATGAGTGGC.....................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................CCATCTCTTGT--ATGAGTGGCGCGG.................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................CTCGAGCTAGTTCATCTGCGATGCA...............................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................CTTCTATGTCCCTGTGTCCGGG....	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................ATCTGCGATGCAGTTGCCT........................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..............................................TTGGCCATATTTGGCGTGTTAGGCGACA..........................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................TGTGGTGTTTTCCCATATTGTCTG...............................................................................................................................................................	24	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TTCTATGTCCCTGTGTCCGG.....	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................TGTGTGGTGTTTTCCCATATTGTCTG...............................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................TCTTGT--ATGAGTGGCGCGGTAGTGCC..........................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................CTAGTTCATCTGCGATGCAGTTGCC.........................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
...............................................TGGCCATATTTGGCGTGTTAGGCGACAG.........................................................................................................................................................................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
...........................................TTTTTGGCCATATTTGGCGTGTTAGGC..............................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.................................TTTGAGCTTATTTTTGGCCATATTTGGCG......................................................................................................................................................................................................	29	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................TCCATCTCTTGT--ATGAGTGGCGCGGTA...............................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................TATTTGGCGTGTTAGGCGACAGTGTG.....................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
........................................................TTGGCGTGTTAGGCGACAGTGTGTGG..................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................TAGTTCATCTGCGATGCAGTT............................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...................................................CATATTTGGCGTGTTAGGCGACAGT........................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................TGTTTTCCCATATTGTCTGTTTGTT.........................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................GTAGTAGTTTACAAGTGGCTAAAGGC.........................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................AAGTGGCTAAAGGCATACTCA..................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................TGGCGTGTTAGGCGACAGTGTGTGGTG................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................TAGTAGTTTACAAGTGGCTAAAGG..........................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

-23.2	-23.2	-23.2	-22.8

dpe_681

scaffold_111:106176-106326 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads