ID:

dpe_679

 Coordinate:

scaffold_11:2712383-2712533 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

Antisense to exon [dper_GLEANR_15143:1]; Antisense to CDS [Dper\GL14458-cds]; CDS [Dper\GL14172-cds]; exon [dper_GLEANR_14865:1]; intron [Dper\GL14172-in]; Antisense to intron [Dper\GL14458-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AGCCGCCACAGCATCTCTTCACCACATGTCGCAGCCGGGCACAGGCAGTGGTGAGTACTCGCTTGATTTATTTTTCATTTCGTCAAGTCATAGTTGCCCCCTCCATGACTCATATCCCAAGAAACTACACGAATGACAATATAACTAGACAGACAGACAACAACTACAAACATGACGGCCACTAATTCGTGGTCATTCTCTCCAGTTTACTCCACACTTTCACACTCACCTTCCACGGGCGCCATTTTTTG
**************************************************(((((((((.(((((((..............)))))))...))).............))))))...............................................................((((((......)))))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 M021
embryo
 V057
head
 V042
embryo
................CTTCACCACATGTCGCAGCCGGGC................................................................................................................................................................................................................... 24 0 1 2.00 2 0 2 0 0
..........................................................................................................................................................................................................................TTCACACTCACCTTCCACGGG............ 21 0 1 1.00 1 1 0 0 0
........................CATGTCGCAGCCGGGCACAGGCAGT.......................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0
......................CACATGTCGCAGCCGGGC................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0
.........................................................................................................................................................................................................................TATCACACCCACCTTCCACGCG............ 22 3 1 1.00 1 0 0 1 0
.........AGCATCTCTTCACCAAATGTCG............................................................................................................................................................................................................................ 22 1 1 1.00 1 0 1 0 0
....................................................................................................................................................................TACAAACATGACGGCCACTGA.................................................................. 21 1 1 1.00 1 1 0 0 0
.........................ATGTCGCAGCCGGGCACAGGC............................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 1
...........CATCTCTTCACCACATGTCGCAGCCGG..................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0
......................CACATGTCGCAGCCGGGCACAGGCAGTG......................................................................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0
..........................................AGGCAGTGATGAGGGCTCGCT............................................................................................................................................................................................ 21 3 2 0.50 1 0 0 1 0

Anti-sense strand reads

-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################------
TCGGCGGTGTCGTAGAGAAGTGGTGTACAGCGTCGGCCCGTGTCCGTCACCACTCATGAGCGAACTAAATAAAAAGTAAAGCAGTTCAGTATCAACGGGGGAGGTACTGAGTATAGGGTTCTTTGATGTGCTTACTGTTATATTGATCTGTCTGTCTGTTGTTGATGTTTGTACTGCCGGTGATTAAGCACCAGTAAGAGAGGTCAAATGAGGTGTGAAAGTGTGAGTGGAAGGTGCCCGCGGTAAAAAAC
**************************************************(((((((((.(((((((..............)))))))...))).............))))))...............................................................((((((......)))))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 V111
male body		 V057
head
 V042
embryo
..................................................................................................................................................................................................................................ATGGAAGGTGCCCGCGGTAAAAA.. 23 1 1 1.00 1 0 1 0 0
...................................................................................................GGAGGTACTGAGTATAGGG..................................................................................................................................... 19 0 1 1.00 1 1 0 0 0
....................................................................................................................................................................................................AGAGAGGTCAAATGAGGTGTGAAAG.............................. 25 0 1 1.00 1 0 1 0 0
............................AGCGTCGGCCCGTGTCTGTCACCAC...................................................................................................................................................................................................... 25 1 1 1.00 1 1 0 0 0
.......................................................................................AGTATCAACGGGGGAGGTACTG.............................................................................................................................................. 22 0 1 1.00 1 1 0 0 0
.................................................................................................TGGGAGGTACTGAGTATAG....................................................................................................................................... 19 1 1 1.00 1 0 1 0 0
................................................................................................GGGGGAGGTACTGAGTATAGG...................................................................................................................................... 21 0 1 1.00 1 1 0 0 0
....CGGTGTCGTAGAGAAGTGGT................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0
..........................................................................................................................................................................................................GTCAAATGAGGTGTGAAAGTGT........................... 22 0 1 1.00 1 0 1 0 0
...................................................................................................................................................................................................................................TGGAAGGTGCCCGCGGTAAA.... 20 0 1 1.00 1 0 0 0 1
..........................................................................................................................................................................................................GTCAAATGAGGTGTGAAAGTG............................ 21 0 1 1.00 1 1 0 0 0
....................................................................................................................................................TGTCTGTCTGTTGTTGATGTT.................................................................................. 21 0 1 1.00 1 1 0 0 0
....................................................................................................................................................................................................................GTGTGGAAGTGTGGGTGGAAG.................. 21 2 1 1.00 1 0 1 0 0
.......................................................................................................GTACTGAGTATAGGGTTCTT................................................................................................................................ 20 0 1 1.00 1 1 0 0 0
.................................................................................................................TAGGGTTCTTTGATGTGCTTA..................................................................................................................... 21 0 1 1.00 1 1 0 0 0
....................................................................................................................................................TGTCTGTCTGTTGTTGATGT................................................................................... 20 0 1 1.00 1 0 1 0 0
............................................CGTCAACACTCATGTGCCAACT......................................................................................................................................................................................... 22 3 1 1.00 1 0 0 1 0
................................................................................................................................................................................................................TGAGGTGTGAAAGTGTGAGTG...................... 21 0 1 1.00 1 0 1 0 0
..............................................................................................................TTATAGGGTTCTTTGATGT.......................................................................................................................... 19 1 2 0.50 1 0 1 0 0
.......................................................................................................................................TGCTATATTGGTCTGACTGT................................................................................................ 20 3 8 0.13 1 0 0 1 0
................................................................................................................................................................................................................TGAGGTGTGGAAGTGTGAG........................ 19 1 8 0.13 1 0 1 0 0
....................................................................................................................................................................GTGTTTGTACTACCGTTGATT.................................................................. 21 3 9 0.11 1 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_11:2712333-2712583 - dpe_679 AGCCGCCACAGCATCTCTTCACCACATGTCGCAGCCGGGCACAGGCAGTGGTGAGTACTCGCTTGAT-----TTA----TTTTTC-ATT--------------------TCGTCAAGTC-ATA-------G-----TTGCCC-C-------CTCCATGACTCATAT--CC-----------------------------------------------CA---------------AGAAACTACACGAATGAC----------AATATAACTAGACAGACAGACAACAACTACAAACATG-A-----------CGGCCA----------------------------------------------------------C-------TAATTCGTGGTCATTCTCTC------------------------------------CAGT-----------------------------------------------------TTACT--------------------CCA-----------CA-------C-------TTTCACACTCACCTTCCACGGGCGCCATTTT-TTG
dp5 XL_group3a:1966541-1966791 + AGCCGCCACAGCATCTCTTCACCACATGTCGCAGCCGGGCACAGGCAGTGGTGAGTACTCGCTTGAT-----TTA----TTTTTC-ATT--------------------TCGTCAAGTC-ATA-------G-----TTGCCC-C-------CTCCATGACTCATAT--CC-----------------------------------------------CA---------------AGAAACTACACGAATGAC----------AATATAACTAGACAGACAGACAACAACTACAAGCATG-A-----------CGGCCA----------------------------------------------------------C-------TAATTCGTGGTCATTCTCTC------------------------------------CAGT-----------------------------------------------------TTACT--------------------CCA-----------CA-------C-------TTTCACACTCACCTTCCACGGGCGCCATTTT-TTG
droWil2 scf2_1100000004909:12003267-12003483 + AGCCACCGCAGCATTTATTTACCACATGTCGCAATCGGGAGCAGGCAACGGTGAGTTTTGGTTTTAT---------------T-------------------------TTACTCTAGTC-A------------------CCC-T-------GCTGCTGACTCATCA--CCAACATCATCATCATCATAATCCATAA--------------------TAG---------------AGACAAGACAACAACTAC----------AAAACACTAAGACAAACCAAAAATAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG---AA-------AAAA-------T-------TTTGCCACTTACCTTGTGCGGGCGCCATGTT-TTG
droVir3 scaffold_12928:1254603-1254897 + dvi_8417 AGCCGCCGCAGCATCTATTCACCACATGCCGCAACCTGGAGCAGGCCACAGTAAGTACAT-------------------------------------------------TTGCCCAGTC-ATG-------T------CACCC-TA------ACGGGTGACTCATGC--ACAGGGTCA-------------------ATTGTTAAAGAGTATCAACGAC-AT---CTACA--CATCGAAACTACGCGAATAATTAT------------AAGTGGCAACAGCAACAACAACAGCAGC----------AACA--ACAGCAACAACCCGTAACGCGAGCGAGACAGC-------------------------------------------------------------------------------------AA--GAAATAT-----TCTTGTCTTGTGTGTGGCATCACTTC-T---------------------------------G------------------T-----------T----------------ACTCACCTTTACCGTCTACGGGCGCCATGTT-TTG
droMoj3 scaffold_6473:13735279-13735548 - AGCCACCGCAGCATCTTTTCACCACATGCCGCAATCTGGAGCAAGCCACGGTAAGTAGTT-------------------------------------------------TTGTCTAGTC-ATG-------TC---T------CAA------AGGGGTGACTCATGCATCC-----------------------------------------------CC------CCCA--CATCGAAACTACGCGAATAATTAACAAAACT---------GGCTACAGCAACAATATACATACATATGTA-----------------TAACCCGTAACGCGAGGGAGACAGC-------------------------------------------------------------------------------------A---GAAATAT-----TCTTGTCTTG----TGGCATCACTTC-TTATT---------------------CCGCT--------------------ACT-----------TA-------C-------ACTCACCTTTACCTTGCACGGGCGCCATGTT-TTG
droGri2 scaffold_15203:8456558-8456829 - AGCCGCCCCAGCATCTTTTTACGACTTGTCGCAACTTGGAGCAGGCCACAGTAAGTAAAAG--------------------------------------------------------AA-AAA-------A-----ATGCCAACA------ATTCATGACTCATGC---G-----------------------------------------------AA---------------AGAAACTACGCGAATTAA----------AAAGCAAAAATATATGGCAACAACAC--------TAGCC-----------------TAACCCGT-----------------CTATCCGT-----------------------------------------CCCTTCGTCCGCAACGATGACAGAACCACGGAGAGCAATTAAATTAT-----TCTCGTCTGC----TGGCATCAC------------------------------------CCAGC-TCC----G-----ACT-----------T----------------ACTCACCTTTACCATCTACGGGCGCCATGTT-TTG
droAna3 scaffold_13335:1600721-1600959 + dan_2259 AGCCACCGCAGCATCTCTTCACGACCTGCCGGAACCGGGAGCAGGCCCAAGTAAGTGTTGTCGGTTT-TGT---A-------TCC-AAG----TGA--------------CCCCTA--A-AGCG------G-----TC----AAGAGACTCGCCCATGACTCACGC--CC-----------------------------------------------CG---------------AGAAACTACGCGAACAAATCT------------AAC----------------------------------------------------CAAT-----------------CCATCCGGTGCTATTAAGACCCATTCGGACCCATCACAATCCGCTCTT--------------------------------------------------------------------------------------------------------------T--------------------CGA-----------AA-------C-------CCTGGCACTCACCTGGTACGGGCGCCATTAT-TTG
droBip1 scf7180000395454:67428-67660 - AGCCGCCGCAGCATCTCTTCACGACCTGCCGGAACCGGGAGGTGGCCAAAGTAAGTGTCTAGTGT-------TTA----TCCATC-CAT----TGA--------------CCCCTAGTC-ATG-------G-----TC----AAG------ACCCATGACTCACGC--CC-----------------------------------------------CG---------------AGAAACTACGCGAACAATCTA-------------AC----------------------------------------------------CAAT-----------------CCATCCGG--CTATTC--ACCCA----------T-------CAGTCGGTGCTAATGCTAAT------------------------------------CCGC-----------------------------------------------------TCTTT--------------------CGC-----------------GAAC--------CCCGCACTCACCTGGTACGGGCGCCATTAT-TTG
droKik1 scf7180000302696:1731801-1732044 - AGCCGCCGCAGCATCTCTTTACAACATGCCGCAGTCGGGCGCAGGCCACGGTAAGCAGGGGGTTAAC-----ACC----AGTGA-CCGC--------------------TGGACGCGCTAATCGGTG---A---------CC-GG--G---CGGCGTGACTCACAC--CC-----------------------------------------------CG---------------AGAAACTACGCGAACAATCCACAAGAAC--------------------------------------------ACA--ATAACAA--------------------------------------CTAACTAGCA------------------------------AAG------------------------------------CTAATCCG-----GC-TTG--------------------------------------------------GGA-----CTTGGAACCC---GA-------TT--CCGCAAAA--------CGACTACTCACCTTGCACGGGCGCCATTTT-CAG
droFic1 scf7180000454077:1851373-1851598 + AGCCGCCGCAGCATCTCTTCACTACTTGTCGGAACCGCGAACAGGCGAAGGTTAGTGTTGTTTT------------------------------------------AGTTGGTCCAGCA-G----------------------CA------ACCGGTGACTCACGTTCCC-----------------------------------------------CA---------------AGAAACTACGCGAACAATCCACAAGAAT------------------------------------T-G----CGGG--CCAGCAA--------------------------------------ACAATCTTCA------------------------------ATC------------------------------------------------------------------------------CCCCTC--------------TAATTTTCGTT-TCC----GAGCCG--------TA--AA--CAGCCAAC-------CG-TAAACTCACCTTGAACTGGCGCCATTAT-ATG
droEle1 scf7180000491006:1658042-1658271 - AGCCGCCGCAGCATCTGTTCACCACTTGCCGGAATCGCGGACAAGCCAAGGTAAGGGGTTCGT-------------------------------------------ACTTGGTCCAGTA-ACCAGTAACAGT---A-------AG------TTAGGTGACTCACATTCCC-----------------------------------------------CC---------------AGAAACTACGCGAACAATCCGCTAGCAT------------------------------------A-AAGTTCGCT--ATAACTA--------------------------------------ATAAGTCACA------------------------------A------------------------------------------TTCG----------------------------------CCCCGC--------------CATTTCCCGCG-TCC----GAT--------------------------C-------CCAAAAACTCACCTTGCACGGGCGCCATTGT-CTG
droRho1 scf7180000779675:16547-16758 + AGCCGCCGCAGCATCTGTTCACCACTTGCCGGAATCGCGCACAGGCCACGGTAAGGGGTTTTTTT--TTGT-----------------------------------AGACGGTCCAGTA-GCC------------------G-G-------TTAGATGACTCACATTCCC-----------------------------------------------CC------AGAAACT--AGAAACTACGCGAACAATCCGCAAGAAC-------------------------------------------CACT----------------------------------------------------------------------------TA------------------------------------------------------------------------------------ATAATGCCCCGC--------------TAATTCCCGC--------------------------------------CTTTCGATC-GAAAACTCACCTTGCACGGGCGCCATTAT-CTG
droBia1 scf7180000302421:2076664-2076891 - AGCCGCCGCAGCATCTCTTCACCACCTGCCGCAACCGCCAGCAGGCCCAGGTAAGTTCGG------------------------------------C-----------------TCGCC-G---------CCGAAG-------AC------GCCGGTGACTCACGG--CC-----------------------------------------------TC---------------AGAAACTACGCGAACAATCCGCAAGAAG-------------------------------------------CG-----GACCCG----------------------------------------------------------C-------TTATTCCCGCCCGTGCCCGC------------------------------------TCGTTCCCGCGTTC----CCGCG-------------------------------------TTCCCGCCTTCC----A-GTCG----------------CGGCCAAC-------CG-TAGACTCACCTTGCACGGGCGCCATTGT-CGG
droTak1 scf7180000415141:218443-218646 - AGCCGCCGCAGCATCTTTTCACCACCTGCCGGAATCGCGAGCAGGCAAAGGTACGTTTTTCG----------------------------------------------TTGGTCCAGCG-ATT-----GGA--------------------TAGGGTGACTCACGGGGCC-----------------------------------------------CC---------------AGAAACTACGCGAACAATCCACAAGAAG-------------------------------------------CGCT------------------------------------------------------------------------------------------CACTT------------------------------------CACT------------------------T-AAT--TGCCCAGA------------------------------------------AA-------CTACCTG--AACTATAGA--TTATAACTCACCTTGCACGGGCGCCATTAT-CTG
droEug1 scf7180000409064:216799-217044 - AGCCGCCGCAGCATCTTTTTACCACTTGCCGAAATCGCGAACAGGCAAAGGTAAGTCTTTAAGT---------------------TGGATTGG---C-----------TCGGTCCAGTA-AC-------AAC---A------AAA------ACCGGTGACTCACGAAAAC-----------------------------------------------CA-G-----AAAACTATAGAAACTACGCGAACAATCTACAAGAGC-------------------------------------------CACTCAATA--------------------------------------------------------------------ACCAC----TAATCGTCCA-A------------------------------------TTA-----------------------------------GCCCGG--------------TAATTCCCGCC-TCC----A-ATCG--------TAAAATAA-------C-------CG-TAAACTCACCTTGTACAGGCGCCATTAT-CTC
dm3 chrX:8136742-8137033 - AGCCGCCGCAGCATCTATTTACCACCTGCCGGAATCGCGAGCAGGCAAAGGTGAGAGATGTTTTC--TTCTT--A------TTT-TGCGTTGT---CTCTCTACTAAGACAATCCAGTA-ATC-----CAAC---A-------AA------ACCGGTGACTCACAA--CCG---------------------------------------------TCGAGCTACAGAAACTACAGAAGCTACGCGAACAATCCACAAGAGC-------------------------------------------CACT--ATTTC-------------------------------------------------------------TACAAACCGCTTTTTAATCGTCCA--------------------------------------------------------------------------------AATGGGCATGCATAAATTGAA--TGGT-TCAATTGGAATCG---AA-------TTAA-------C-------TGTGAAACTCACCTTGCACGGGCGCCATTATTTTG
droSim2 x:7708421-7708709 - dsi_22241 AGCCGCCGCAGCATCTATTTACCACCTGCCGGAATCGCGAGCAGGCAAAGGTGAGAGATGTTTTC--TTCTT--A------CTT-TGCCTTGT---CTCTCTACTAAGACAATCCAGTA-ATC-----CAAC---A-------AA------ACCGGTGACTCACAA--CCG---------------------------------------------TCGAG---CAGAAACTACAGAAGCTACGCGAACAATCCACAAGAGC-------------------------------------------CACT--ATTAC-------------------------------------------------------------TACAAACCGCTTTTTAATCGTCCA--------------------------------------------------------------------------------AATGAGTATGCATAAATTGAA--TGGC-TCCATTGGAATCG---AA-------TTAA-------C-------TGTGAAACTCACCTTGCACGGGCGCCATTATTTTG
droSec2 scaffold_44:227847-228134 - AACCGCCGCAGCATCTATTTACCACCTGCCGGAATCGCGAGCAGGCAAAGGTGAGAGATGTTTTC--TTC---TA------CTT-TGCCTTGT---CTCTCTACTAAGACAATCCAGTA-ATC-----CAAC---A-------AA------ACCGGTGACTCACAA--CCG---------------------------------------------TCGAG---CAGAAACTACAGAAGCTACGCGAACAATCCACAAGAGC-------------------------------------------CACT--ATTAC-------------------------------------------------------------TACAAACCGCTTTTTAATCGTCCA--------------------------------------------------------------------------------AATGAGTATGCATAAATTGAA--TGGC-TCCATTGGAATCG---AA-------TTAA-------C-------TGTGAAACTCACCTTGCACGGGCGCCATTATTTTG
droYak3 X:13177173-13177472 + AGCCGCCGCAGCATCTATTTACCACCTGCCGGAATCGCGAGCAGGCAAAGGTGAGAGGTGTTTTCAT-----TTC----TTTTT-CATCTTGT---CTCTCTATTAAGACAATTCAGTA-AGC-----TAAC---G-------AA------ACCGGTGAGTCACAA--CGG---------------------------------------------CC-AG---TAGAAACTACAGAAACTACGCGAACAATTCACAAGAAC-------------------------------------------CACT--ATTAC-------------------------------------------------------------TA-AAACCGCTTTTTAATCATCGA--------------------------------------------------------------------------------AATGAGCATGCATAATTTGAA--TGCT-TCCATCGGAATCG---AATTGCAAATTAGCTGTAA-A-------TATAAAACTCACCTTGCACGGGCGCCATTAT-TTC
droEre2 scaffold_4690:10503497-10503780 - AGCCGCCGCAGCATCTATTTACCACCTGCCGGAATCGCGAGCAGGCAAAGGTGAGAGGTGTTTTC--TTATTCCACTGTTTTTT-CTGTTTGT---CCCTCTTTTGAGACGATCCAGTA-ATC-----CGAC---A-------AA------ACCGGTGACTCACAA--CGG---------------------------------------------AC-AG---CA-AAACTACAGAAACTACGCGAACAATCCACAAGAAC-------------------------------------------CACT--ATTAC-------------------------------------------------------------TA-GAACCGCTTTTTAGTCACC-----------------------------------------------------------------------------------------ATGCATGGTTTAAA--TGGC-TCCAACGGAATTG---AA-------TTAA-------C-------TGTAAAACTCACCTTGCACGGGTGCCATTAT-TTC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
AGCCGCCACAGCATCTCTTCACCACATGTCGCAGCCGGGCACAGGCAGTGGTGAGTACTCGCTTGAT-----TTA----TTTTTC-ATT--------------------TCGTCAAGTC-ATA-------G-----TTGCCC-C-------CTCCATGACTCATAT--CC-----------------------------------------------CA---------------AGAAACTACACGAATGAC----------AATATAACTAGACAGACAGACAACAACTACAAACATG-A-----------CGGCCA----------------------------------------------------------C-------TAATTCGTGGTCATTCTCTC------------------------------------CAGT-----------------------------------------------------TTACT--------------------CCA-----------CA-------C-------TTTCACACTCACCTTCCACGGGCGCCATTTT-TTGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
................CTTCACCACATGTCGCAGCCGGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.002200000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCACACTCACCTTCCACGGG.............2111.001010000
........................CATGTCGCAGCCGGGCACAGGCAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
......................CACATGTCGCAGCCGGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
.........................ATGTCGCAGCCGGGCACAGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000
...........CATCTCTTCACCACATGTCGCAGCCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
......................CACATGTCGCAGCCGGGCACAGGCAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
dp5
AGCCGCCACAGCATCTCTTCACCACATGTCGCAGCCGGGCACAGGCAGTGGTGAGTACTCGCTTGAT-----TTA----TTTTTC-ATT--------------------TCGTCAAGTC-ATA-------G-----TTGCCC-C-------CTCCATGACTCATAT--CC-----------------------------------------------CA---------------AGAAACTACACGAATGAC----------AATATAACTAGACAGACAGACAACAACTACAAGCATG-A-----------CGGCCA----------------------------------------------------------C-------TAATTCGTGGTCATTCTCTC------------------------------------CAGT-----------------------------------------------------TTACT--------------------CCA-----------CA-------C-------TTTCACACTCACCTTCCACGGGCGCCATTTT-TTGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACACTCACCTTCCACGGGC............2112.0020200000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-------TTTCACACTCACCTTCCACG...............2111.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACTCACCTTCCACGGG.............1911.0010100000000
................................................................................................................TCAAGTC-ATA-------G-----TTGCCC-C-------C....................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
...................................................................................................................................................................TAT--CC-----------------------------------------------CA---------------AGAAACTACACGAA....................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.......................ACATGTCGCAGCCGGGCACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.......................................................................................................................................................................................................................................................ATGAC----------AATATAACTAGACAGA......................................................................................................................................................................................................................................................................................................................2111.0010100000000
...........CATCTCTTCACCACATGTCGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
......CACAGCATCTCTTCACCACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000001000
..................................................................................................................................................................................................................................................................................................................................................................................................................TC------------------------------------CAGT-----------------------------------------------------TTACT--------------------CCA-----------CA-------C-------TTTC...............................2111.0010100000000
............ATCTCTTCACCACATGTCGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
............................................................................................................................................................................................................................................................................................ACAACTACAAGCATG-A-----------CGGC................................................................................................................................................................................................................................................................................2011.0010100000000
.....................................GGCACAGGCAGTGGTGAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCACGGGCGCCATTTT-...1911.0010100000000
............ATCTCTTCACCACATGTCGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACTCACCTTCCACGGGCT...........2011.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................CTCTC------------------------------------CAGT-----------------------------------------------------TTACT--------------------CCA-----------CA-------C-------T..................................2111.0010100000000
........................CATGTCGCAGCCGGGCACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001000000
.................TTCACCACATGTCGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GT-----------------------------------------------------TTACT--------------------CCA-----------CA-------C-------TTTCACA............................2011.0010100000000
.........................................................................................................................TA-------G-----TTGCCC-C-------CTCCATGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACTCACCTTCCACGGGCGC..........2111.0010000001000
droWil2
AGCCACCGCAGCATTTATTTACCACATGTCGCAATCGGGAGCAGGCAACGGTGAGTTTTGGTTTTAT---------------T-------------------------TTACTCTAGTC-A------------------CCC-T-------GCTGCTGACTCATCA--CCAACATCATCATCATCATAATCCATAA--------------------TAG---------------AGACAAGACAACAACTAC----------AAAACACTAAGACAAACCAAAAATAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG---AA-------AAAA-------T-------TTTGCCACTTACCTTGTGCGGGCGCCATGTT-TTGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................CCACATGTCGCAATCGGGAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001
.......................................AGCAGGCAACGGTGAGTTTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
...............................................................................................................CTCTAGTC-A------------------CCC-T-------GCTGCTGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
.....................CCACATGTCGCAATCGGGAGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
..........................................................................................................................................................................................................................................................AC----------AAAACACTAAGACAAACCA...................................................................................................................................................................................................................................................................................................................2111.00100010
.......................................AGCAGGCAACGGTGAGTTTTGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------T-------TTTGCCACTTACCTTGTGC................2111.00101000
......................................................GTTTTGGTTTTAT---------------T-------------------------TTACTCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------T-------TTTGCCACTTACCTTGTGCG...............2211.00100010
................ATTTACCACATGTCGCAATCGGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
..............................................................................................................ACTCTAGTC-A------------------CCC-T-------GCTGCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
........................CATGTCGCAATCGGGAGCAGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
.....................CCACATGTCGCAATCGGGAGCAGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100
.................................................................................................................................................................CATCA--CCAACATCATCATCAT....................................................................................................................................................................................................................................................................................................................................................................................................................2130.33101000
droVir3
AGCCGCCGCAGCATCTATTCACCACATGCCGCAACCTGGAGCAGGCCACAGTAAGTACAT-------------------------------------------------TTGCCCAGTC-ATG-------T------CACCC-TA------ACGGGTGACTCATGC--ACAGGGTCA-------------------ATTGTTAAAGAGTATCAACGAC-AT---CTACA--CATCGAAACTACGCGAATAATTAT------------AAGTGGCAACAGCAACAACAACAGCAGC----------AACA--ACAGCAACAACCCGTAACGCGAGCGAGACAGC-------------------------------------------------------------------------------------AA--GAAATAT-----TCTTGTCTTGTGTGTGGCATCACTTC-T---------------------------------G------------------T-----------T----------------ACTCACCTTTACCGTCTACGGGCGCCATGTT-TTGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................TTCACCACATGCCGCAACCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.003101000000000000000000000000100000000000000000000000000000000000
.......................................................TACAT-------------------------------------------------TTGCCCAGTC-ATG-------T------CA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002002000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................C----------AACA--ACAGCAACAACCCGTA.....................................................................................................................................................................................................................................................................2112.002000000000000000000000000100001000000000000000000000000000000000
.......................................................................................................................................................................................................GTTAAAGAGTATCAACGAC-A................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
..........................TGCCGCAACCTGGAGCAGGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000010000000000000000000000000000000000000000
.......................................................TACAT-------------------------------------------------TTGCCCAGTC-ATG-------T------CG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
........................CATGCCGCAACCTGGAGCAGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
....................................................AAGTACAT-------------------------------------------------TTGCCCAGTC-ATG-------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTTTACCGTCTACGGGCGC..........2111.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................AACCCGTAACGCGAGCGAGAC........................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000010000000000000000000000000
..................................................................................................................CAGTC-ATG-------T------CACCC-TA------ACGGG................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.....................CCACATGCCGCAACCTGGAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................AATTAT------------AAGTGGCAACAGCA...................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.......................ACATGCCGCAACCTGGAGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
..................................................GTAAGTACAT-------------------------------------------------TTGCCCAGTC-A...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT-----TCTTGTCTTGTGTGTGGC..............................................................................................................................2111.001000000000100000000000000000000000000000000000000000000000000000
...........................GCCGCAACCTGGAGCAGGCCAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................TAACGCGAGCGAGACAGC-------------------------------------------------------------------------------------AA--GA..........................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................AACGAC-AT---CTACA--CATCGAAAC............................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTC-T---------------------------------G------------------T-----------T----------------ACTCACCTTTACC......................2111.001010000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................AATAATTAT------------AAGTGGCAACAG.....................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
.............................CGCAACCTGGAGCAGGCCACAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAT-----TCTTGTCTTGTGTGTG................................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCACTTC-T---------------------------------G------------------T-----------T----------------ACTCAC.............................2011.001000000000000000000000000000000100000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTTTACCGTCTACGGGCGCC.........2211.001000000000000000000000000001000000000000000000000000000000000000
.......................................................................................................................................................................................................................................CATCGAAACTACGCGAATAAT................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000100000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................TAACGCGAGCGAGACAGC-------------------------------------------------------------------------------------AA--G...........................................................................................................................................................2111.001000000001000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................GCAACAGCAACAACAACAGCAGC----------A..........................................................................................................................................................................................................................................................................................24200.102001000000000000000000000000001000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................AGCAGC----------AACA--ACAGCAACAAC..........................................................................................................................................................................................................................................................................21200.102000000000000000000010000000000000000100000000000000000000000000
.............................................................................................................................................................................................................................................................................GTGGCAACAGCAACAACAC............................................................................................................................................................................................................................................................................................................19140.071000100000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................AACAACAACAGCAGC----------AACA--ACAGCAACA............................................................................................................................................................................................................................................................................28190.051001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................CAACAACAACAGCAGC----------AACA--.....................................................................................................................................................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................CAACAGCAGC----------AACA--ACAGCAA..............................................................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................AGCAGC----------AACA--ACAGCAACAA...........................................................................................................................................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................GCAACAACAACAGCAGC----------AACA--.....................................................................................................................................................................................................................................................................................21200.051000000000000000000000000001000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................AGCAACAACAACAGCAGC----------AACA--ACAGC................................................................................................................................................................................................................................................................................27200.051001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................AACAGCAACAACAACAGCAGC----------A..........................................................................................................................................................................................................................................................................................22200.051000000000000000000000010000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................ACAACAACAGCAGC----------AACA--ACA..................................................................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................GCAACAACAACAGCAGC----------AAC........................................................................................................................................................................................................................................................................................20200.051000000000000000000000000001000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................ACAGCAGC----------AACA--ACAGCAACA............................................................................................................................................................................................................................................................................21200.051000000000000000000000000000010000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................CAGCAACAACAACAGCAGC----------A..........................................................................................................................................................................................................................................................................................20200.051000000000000000000000001000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................GCAACAACAACAGCAGC----------AACA--ACA..................................................................................................................................................................................................................................................................................24200.051001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................AGCAGC----------AACA--ACAGCAACA............................................................................................................................................................................................................................................................................19200.051000000000000000000000000010000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................AACAACAGCAGC----------AACA--ACAGCA...............................................................................................................................................................................................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................AACAACAACAGCAGC----------AACA--ACAGC................................................................................................................................................................................................................................................................................24200.051000100000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................ACAACAGCAGC----------AACA--ACAGCAACA............................................................................................................................................................................................................................................................................24200.051000000000000001000000000000000000000000000000000000000000000000
droMoj3
AGCCACCGCAGCATCTTTTCACCACATGCCGCAATCTGGAGCAAGCCACGGTAAGTAGTT-------------------------------------------------TTGTCTAGTC-ATG-------TC---T------CAA------AGGGGTGACTCATGCATCC-----------------------------------------------CC------CCCA--CATCGAAACTACGCGAATAATTAACAAAACT---------GGCTACAGCAACAATATACATACATATGTA-----------------TAACCCGTAACGCGAGGGAGACAGC-------------------------------------------------------------------------------------A---GAAATAT-----TCTTGTCTTG----TGGCATCACTTC-TTATT---------------------CCGCT--------------------ACT-----------TA-------C-------ACTCACCTTTACCTTGCACGGGCGCCATGTT-TTGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...............................................................................................................................................................CTCATGCATCC-----------------------------------------------CC------CCCA--CATC.................................................................................................................................................................................................................................................................................................................................................................2111.001100000
..............................GCAATCTGGAGCAAGCCAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000100
.................................................................................................................CTAGTC-ATG-------TC---T------CAA------AGGGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
.....................................GGAGCAAGCCACGGTAAGTAGTT-------------------------------------------------T..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000100
droGri2
AGCCGCCCCAGCATCTTTTTACGACTTGTCGCAACTTGGAGCAGGCCACAGTAAGTAAAAG--------------------------------------------------------AA-AAA-------A-----ATGCCAACA------ATTCATGACTCATGC---G-----------------------------------------------AA---------------AGAAACTACGCGAATTAA----------AAAGCAAAAATATATGGCAACAACAC--------TAGCC-----------------TAACCCGT-----------------CTATCCGT-----------------------------------------CCCTTCGTCCGCAACGATGACAGAACCACGGAGAGCAATTAAATTAT-----TCTCGTCTGC----TGGCATCAC------------------------------------CCAGC-TCC----G-----ACT-----------T----------------ACTCACCTTTACCATCTACGGGCGCCATGTT-TTGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
................TTTTACGACTTGTCGCAACTTGGAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00110
droAna3
AGCCACCGCAGCATCTCTTCACGACCTGCCGGAACCGGGAGCAGGCCCAAGTAAGTGTTGTCGGTTT-TGT---A-------TCC-AAG----TGA--------------CCCCTA--A-AGCG------G-----TC----AAGAGACTCGCCCATGACTCACGC--CC-----------------------------------------------CG---------------AGAAACTACGCGAACAAATCT------------AAC----------------------------------------------------CAAT-----------------CCATCCGGTGCTATTAAGACCCATTCGGACCCATCACAATCCGCTCTT--------------------------------------------------------------------------------------------------------------T--------------------CGA-----------AA-------C-------CCTGGCACTCACCTGGTACGGGCGCCATTAT-TTGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................................................................................................................................TC----AAGAGACTCGCCCATGACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002100001
.................................................................................................................CTA--A-AGCG------G-----TC----AAGAGACTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000002
................CTTCACGACCTGCCGGAACCGGGAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.002200000
...........CATCTCTTCACGACCTGCCGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTCACCTGGTACGGGCGC..........2111.001100000
...................CACGACCTGCCGGAACCGGGAGCAGGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001010000
.......GCAGCATCTCTTCACGACCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
...............TCTTCACGACCTGCCGGAACCGGGAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
.......................................................TGTTGTCGGTTT-TGT---A-------TCC-AA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
...................CACGACCTGCCGGAACCGGGAGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000010
...........CATCTCTTCACGACCTGCCGGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
......................................................................................................................................................CGCCCATGACTCACGC--CC-----------------------------------------------CG---------------A.................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.................................................................TT-TGT---A-------TCC-AAG----TGA--------------CCCCTA--......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................TCCGCTCTT--------------------------------------------------------------------------------------------------------------T--------------------CGA-----------AA-------C-------CCTGG..............................2111.001100000
.................TTCACGACCTGCCGGAACCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
................................................................................................................................................GAGACTCGCCCATGACTCAC........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.........AGCATCTCTTCACGACCTGCCGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
..............................................................................................................................................AAGAGACTCGCCCATGACTCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
...................CACGACCTGCCGGAACCGGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
.................................................................................................................................................AGACTCGCCCATGACTCACGC--....................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.................TTCACGACCTGCCGGAACCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
................CTTCACGACCTGCCGGAACCGGGAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
............ATCTCTTCACGACCTGCCGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.........................................CAGGCCCAAGTAAGTGTTGTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
..............CTCTTCACGACCTGCCGGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
.....................CGACCTGCCGGAACCGGGAGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
...................CACGACCTGCCGGAACCGGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
droBip1
AGCCGCCGCAGCATCTCTTCACGACCTGCCGGAACCGGGAGGTGGCCAAAGTAAGTGTCTAGTGT-------TTA----TCCATC-CAT----TGA--------------CCCCTAGTC-ATG-------G-----TC----AAG------ACCCATGACTCACGC--CC-----------------------------------------------CG---------------AGAAACTACGCGAACAATCTA-------------AC----------------------------------------------------CAAT-----------------CCATCCGG--CTATTC--ACCCA----------T-------CAGTCGGTGCTAATGCTAAT------------------------------------CCGC-----------------------------------------------------TCTTT--------------------CGC-----------------GAAC--------CCCGCACTCACCTGGTACGGGCGCCATTAT-TTGSizeHit CountTotal NormTotal
No Reads
droKik1
AGCCGCCGCAGCATCTCTTTACAACATGCCGCAGTCGGGCGCAGGCCACGGTAAGCAGGGGGTTAAC-----ACC----AGTGA-CCGC--------------------TGGACGCGCTAATCGGTG---A---------CC-GG--G---CGGCGTGACTCACAC--CC-----------------------------------------------CG---------------AGAAACTACGCGAACAATCCACAAGAAC--------------------------------------------ACA--ATAACAA--------------------------------------CTAACTAGCA------------------------------AAG------------------------------------CTAATCCG-----GC-TTG--------------------------------------------------GGA-----CTTGGAACCC---GA-------TT--CCGCAAAA--------CGACTACTCACCTTGCACGGGCGCCATTTT-CAGSizeHit CountTotal NormTotal
No Reads
droFic1
AGCCGCCGCAGCATCTCTTCACTACTTGTCGGAACCGCGAACAGGCGAAGGTTAGTGTTGTTTT------------------------------------------AGTTGGTCCAGCA-G----------------------CA------ACCGGTGACTCACGTTCCC-----------------------------------------------CA---------------AGAAACTACGCGAACAATCCACAAGAAT------------------------------------T-G----CGGG--CCAGCAA--------------------------------------ACAATCTTCA------------------------------ATC------------------------------------------------------------------------------CCCCTC--------------TAATTTTCGTT-TCC----GAGCCG--------TA--AA--CAGCCAAC-------CG-TAAACTCACCTTGAACTGGCGCCATTAT-ATGSizeHit CountTotal NormTotal
No Reads
droEle1
AGCCGCCGCAGCATCTGTTCACCACTTGCCGGAATCGCGGACAAGCCAAGGTAAGGGGTTCGT-------------------------------------------ACTTGGTCCAGTA-ACCAGTAACAGT---A-------AG------TTAGGTGACTCACATTCCC-----------------------------------------------CC---------------AGAAACTACGCGAACAATCCGCTAGCAT------------------------------------A-AAGTTCGCT--ATAACTA--------------------------------------ATAAGTCACA------------------------------A------------------------------------------TTCG----------------------------------CCCCGC--------------CATTTCCCGCG-TCC----GAT--------------------------C-------CCAAAAACTCACCTTGCACGGGCGCCATTGT-CTGSizeHit CountTotal NormTotal
No Reads
droRho1
AGCCGCCGCAGCATCTGTTCACCACTTGCCGGAATCGCGCACAGGCCACGGTAAGGGGTTTTTTT--TTGT-----------------------------------AGACGGTCCAGTA-GCC------------------G-G-------TTAGATGACTCACATTCCC-----------------------------------------------CC------AGAAACT--AGAAACTACGCGAACAATCCGCAAGAAC-------------------------------------------CACT----------------------------------------------------------------------------TA------------------------------------------------------------------------------------ATAATGCCCCGC--------------TAATTCCCGC--------------------------------------CTTTCGATC-GAAAACTCACCTTGCACGGGCGCCATTAT-CTGSizeHit CountTotal NormTotal
No Reads
droBia1
AGCCGCCGCAGCATCTCTTCACCACCTGCCGCAACCGCCAGCAGGCCCAGGTAAGTTCGG------------------------------------C-----------------TCGCC-G---------CCGAAG-------AC------GCCGGTGACTCACGG--CC-----------------------------------------------TC---------------AGAAACTACGCGAACAATCCGCAAGAAG-------------------------------------------CG-----GACCCG----------------------------------------------------------C-------TTATTCCCGCCCGTGCCCGC------------------------------------TCGTTCCCGCGTTC----CCGCG-------------------------------------TTCCCGCCTTCC----A-GTCG----------------CGGCCAAC-------CG-TAGACTCACCTTGCACGGGCGCCATTGT-CGGSizeHit CountTotal NormTotal
No Reads
droTak1
AGCCGCCGCAGCATCTTTTCACCACCTGCCGGAATCGCGAGCAGGCAAAGGTACGTTTTTCG----------------------------------------------TTGGTCCAGCG-ATT-----GGA--------------------TAGGGTGACTCACGGGGCC-----------------------------------------------CC---------------AGAAACTACGCGAACAATCCACAAGAAG-------------------------------------------CGCT------------------------------------------------------------------------------------------CACTT------------------------------------CACT------------------------T-AAT--TGCCCAGA------------------------------------------AA-------CTACCTG--AACTATAGA--TTATAACTCACCTTGCACGGGCGCCATTAT-CTGSizeHit CountTotal NormTotal
No Reads
droEug1
AGCCGCCGCAGCATCTTTTTACCACTTGCCGAAATCGCGAACAGGCAAAGGTAAGTCTTTAAGT---------------------TGGATTGG---C-----------TCGGTCCAGTA-AC-------AAC---A------AAA------ACCGGTGACTCACGAAAAC-----------------------------------------------CA-G-----AAAACTATAGAAACTACGCGAACAATCTACAAGAGC-------------------------------------------CACTCAATA--------------------------------------------------------------------ACCAC----TAATCGTCCA-A------------------------------------TTA-----------------------------------GCCCGG--------------TAATTCCCGCC-TCC----A-ATCG--------TAAAATAA-------C-------CG-TAAACTCACCTTGTACAGGCGCCATTAT-CTCSizeHit CountTotal NormTotal
No Reads
dm3
AGCCGCCGCAGCATCTATTTACCACCTGCCGGAATCGCGAGCAGGCAAAGGTGAGAGATGTTTTC--TTCTT--A------TTT-TGCGTTGT---CTCTCTACTAAGACAATCCAGTA-ATC-----CAAC---A-------AA------ACCGGTGACTCACAA--CCG---------------------------------------------TCGAGCTACAGAAACTACAGAAGCTACGCGAACAATCCACAAGAGC-------------------------------------------CACT--ATTTC-------------------------------------------------------------TACAAACCGCTTTTTAATCGTCCA--------------------------------------------------------------------------------AATGGGCATGCATAAATTGAA--TGGT-TCAATTGGAATCG---AA-------TTAA-------C-------TGTGAAACTCACCTTGCACGGGCGCCATTATTTTGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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..............................................................................................................................................................................................................................TACAGAAACTACAGAAGCTA..........................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................CT--ATTTC-------------------------------------------------------------TACAAACCGCTTT......................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................CCGGAATCGCGAGCAGGCAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
....................................GCGAGCAGGCAAAGGTGAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
....................ACCACCTGCCGGAATCGCGAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.............................................CAAAGGTGAGAGATGTTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................AAGAGC-------------------------------------------CACT--ATTTC-------------------------------------------------------------TACAAT.............................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
...................................................................................................................................................................................................................................AAACTACAGAAGCTACGCGAA....................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.................................ATCGCGAGCAGGCAAAGGTGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...................................................................................................................................................................................................................................................GCGAACAATCCACAAGAGC-------------------------------------------CA.........................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................GCGTTGT---CTCTCTACTAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................T--A------TTT-TGCGTTGT---CTCTCTAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GTGAGAGATGTTTTC--TTCTT--A------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................TACAAACCGCTTTTTAATCGTT.............................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
....................ACCACCTGCCGGAATCGCGAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.................................ATCGCGAGCAGGCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................TGCGTTGT---CTCTCTACTAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................CAATCCACAAGAGC-------------------------------------------CACT--ATT..................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.............TCTATTTACCACCTGCCGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTTGCACGGGCGCCATTA.....2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-------TGTGAAACTCACCTTGCACTAT.............2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
......................................................................TT--A------TTT-TGCGTTGT---CTCTCTAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........CAGCATCTATTTACCACCTGCCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACTCACCTTGCACGGGCG...........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
......................................................................TT--A------TTT-TGCGTTGT---CTCTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
..............CTATTTACCACCTGCCGGAATCGCGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................GCTTTTTAATCGTCCA--------------------------------------------------------------------------------AATGGG.....................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................AAGCTACGCGAACAATCCACA...........................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
........................CCTGCCGGAATCGCGAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................CGCGAGCAGGCAAAGGTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
............ATCTATTTACCACCTGCCGGAATCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.......GCAGCATCTATTTACCACCTGCCGGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAA--TGGT-TCAATTGGAATC...................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................CCAGTA-ATC-----CAAC---A-------AA------ACCGG................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TACCACCTGCCGGAATCGCGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................ATTTACCACCTGCCGGAATCGCGAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................CGAACAATCCACAAGAGC-------------------------------------------CACT--.....................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................ATC-----CAAC---A-------AA------ACCGGTGACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................TACAGAAGCTACGCGAACAA.................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCACCTTGCACGGGCGCCA........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTGCACGGGCGCCATTATT...2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGGAATCG---AA-------TTAA-------C-------TGC................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
droSim2
AGCCGCCGCAGCATCTATTTACCACCTGCCGGAATCGCGAGCAGGCAAAGGTGAGAGATGTTTTC--TTCTT--A------CTT-TGCCTTGT---CTCTCTACTAAGACAATCCAGTA-ATC-----CAAC---A-------AA------ACCGGTGACTCACAA--CCG---------------------------------------------TCGAG---CAGAAACTACAGAAGCTACGCGAACAATCCACAAGAGC-------------------------------------------CACT--ATTAC-------------------------------------------------------------TACAAACCGCTTTTTAATCGTCCA--------------------------------------------------------------------------------AATGAGTATGCATAAATTGAA--TGGC-TCCATTGGAATCG---AA-------TTAA-------C-------TGTGAAACTCACCTTGCACGGGCGCCATTATTTTGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG---AA-------TTAA-------C-------TGTGAAACTCACC......................2212.00220000000000000000
...................TACCACCTGCCGGAATCGCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200000020000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCG---AA-------TTAA-------C-------TGTGAAACTCA........................2112.00200000000020000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGAA--TGGC-TCCATTGGAA.....................................................................2112.00200000000101000000
....................................................................................................................................................................................................................................................................................................................................................................................................TTTTAATCGTCCA--------------------------------------------------------------------------------AATGAGTA...................................................................................................2111.00100000010000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCATAAATTGAA--TGGC-TCC............................................................................2111.00100000000000001000
...................................................................................................................................................................................................................................................................................................................................................................................................TTTTTAATCGTCCA--------------------------------------------------------------------------------AATGAGT....................................................................................................2111.00101000000000000000
.............................CGGAATCGCGAGCAGGCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
..............CTATTTACCACCTGCCGGAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000010000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG---AA-------TTAA-------C-------TGTGAAACTCAC.......................2111.00110000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................ATCGTCCA--------------------------------------------------------------------------------AATGAGTATGCAT..............................................................................................2111.00100000000010000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGAAACTCACCTTGCACGG..............2111.00100000000100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCACGGGCGCCATTATTTT.2111.00100000000000001000
.........................................................................................................................................................................................................................................................................................................................................................................................TACAAACCGCTTTTTAATCGT..............................................................................................................................................................................................2111.00100000000010000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCATAAATTGAA--TGGC-TC.............................................................................2111.00101000000000000000
...............................................................................................................................................AA------ACCGGTGACTCACAA--CCG---------------------------------------------T...................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
.........................................CAGGCAAAGGTGAGAGATGTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
..........................................................................................................................................................................G---------------------------------------------TCGAG---CAGAAACTACAGAAG.............................................................................................................................................................................................................................................................................................................................................................2111.00100000000010000000
.........................................................................................................................TC-----CAAC---A-------AA------ACCGGTGACTCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000000010000
..........................................................................................................................................................................................................................GAG---CAGAAACTACAGAAGCTACGC.......................................................................................................................................................................................................................................................................................................................................................2411.00100001000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAATCG---AA-------TTAG-------...........................................16140.07100000001000000000
droSec2
AACCGCCGCAGCATCTATTTACCACCTGCCGGAATCGCGAGCAGGCAAAGGTGAGAGATGTTTTC--TTC---TA------CTT-TGCCTTGT---CTCTCTACTAAGACAATCCAGTA-ATC-----CAAC---A-------AA------ACCGGTGACTCACAA--CCG---------------------------------------------TCGAG---CAGAAACTACAGAAGCTACGCGAACAATCCACAAGAGC-------------------------------------------CACT--ATTAC-------------------------------------------------------------TACAAACCGCTTTTTAATCGTCCA--------------------------------------------------------------------------------AATGAGTATGCATAAATTGAA--TGGC-TCCATTGGAATCG---AA-------TTAA-------C-------TGTGAAACTCACCTTGCACGGGCGCCATTATTTTGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAACTCACCTTGCACGGG.............2112.0022000
..................TTACCACCTGCCGGAATCGCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAA--TGGC-TCCATTGGAATC...................................................................2211.0010100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAATTGAA--TGGC-TCCATTGG.......................................................................2211.0010100
..........................................................................................................................................................GGTGACTCACAA--CCG---------------------------------------------TCGAG---C...........................................................................................................................................................................................................................................................................................................................................................................2111.0010010
..........................................AGGCAAAGGTGAGAGATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
..................................................................................................................................................................................................................................................CGCGAACAATCCACAAGAGC-------------------------------------------C..........................................................................................................................................................................................................................................................................................2111.0011000
...................................................................TTC---TA------CTT-TGCCTTGT---CTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000
......................................................................................................................A-ATC-----CAAC---A-------AA------ACCGGTGACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
.........................CTGCCGGAATCGCGAGCAGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
.............................................................................................................................................................................................................................................................CACAAGAGC-------------------------------------------CACT--ATTAC-------------------------------------------------------------TA.................................................................................................................................................................................................................2011.0010100
.............................CGGAATCGCGAGCAGGCAAAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCG---AA-------TTAA-------C-------TGTGAAAC...........................2111.0011000
................ATTTACCACCTGCCGGAATCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAA-------C-------TGTGAAACTCACCTTG...................2111.0011000
........................................GCAGGCAAAGGTGAGAGATGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
.................TTTACCACCTGCCGGAATCGCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000
..........................TGCCGGAATCGCGAGCAGGCAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000
.................................................................................................................................................................................................................................AGAAACTACAGAAGCTACGCG......................................................................................................................................................................................................................................................................................................................................................2111.0010001
................................................................................................................................................................................................................................CAGAAACTACAGAAGCTACGC.......................................................................................................................................................................................................................................................................................................................................................2111.0010001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAATTGAA--TGGC-TCCATTGG.......................................................................2111.0011000
.......................................................................................................................................................................................................................................TACAGAAGCTACGCGAACAAT................................................................................................................................................................................................................................................................................................................................................2111.0010100
droYak3
AGCCGCCGCAGCATCTATTTACCACCTGCCGGAATCGCGAGCAGGCAAAGGTGAGAGGTGTTTTCAT-----TTC----TTTTT-CATCTTGT---CTCTCTATTAAGACAATTCAGTA-AGC-----TAAC---G-------AA------ACCGGTGAGTCACAA--CGG---------------------------------------------CC-AG---TAGAAACTACAGAAACTACGCGAACAATTCACAAGAAC-------------------------------------------CACT--ATTAC-------------------------------------------------------------TA-AAACCGCTTTTTAATCATCGA--------------------------------------------------------------------------------AATGAGCATGCATAATTTGAA--TGCT-TCCATCGGAATCG---AATTGCAAATTAGCTGTAA-A-------TATAAAACTCACCTTGCACGGGCGCCATTAT-TTCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................................................................................................GC-----TAAC---G-------AA------ACCGGTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAAACTCACCTTGCACGG..............2111.00101000000000
...............................GAATCGCGAGCAGGCAAAGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
.....................CCACCTGCCGGAATCGCGAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
droEre2
AGCCGCCGCAGCATCTATTTACCACCTGCCGGAATCGCGAGCAGGCAAAGGTGAGAGGTGTTTTC--TTATTCCACTGTTTTTT-CTGTTTGT---CCCTCTTTTGAGACGATCCAGTA-ATC-----CGAC---A-------AA------ACCGGTGACTCACAA--CGG---------------------------------------------AC-AG---CA-AAACTACAGAAACTACGCGAACAATCCACAAGAAC-------------------------------------------CACT--ATTAC-------------------------------------------------------------TA-GAACCGCTTTTTAGTCACC-----------------------------------------------------------------------------------------ATGCATGGTTTAAA--TGGC-TCCAACGGAATTG---AA-------TTAA-------C-------TGTAAAACTCACCTTGCACGGGTGCCATTAT-TTCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................TGCCGGAATCGCGAGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA-------C-------TGTAAAACTCACCTTGC..................2111.0011000000
..............CTATTTACCACCTGCCGGAATCGCGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
...............................GAATCGCGAGCAGGCAAAGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000

Generated: 06/08/2015 at 03:00 PM