ID:

dpe_673

 Coordinate:

scaffold_11:2606581-2606731 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-25.3 -25.0 -24.9 -24.8

Flybase annnotation

CDS [Dper\GL14453-cds]; exon [dper_GLEANR_15139:9]; intron [Dper\GL14453-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CAAACAACGTCATCATTGGCTCGCAACAACAACTACAATAAAATATTCTTGCATGTCTCCCCTGAAAACCCCTGAAATACTCACGGTCTGCATGCGGTTGTCTCTCCCATCCCCTGTTCCTTCCCACATAACCCATAACAAATCCATCACTGCGGCCGATGCATGCGGCTAACCCTGAAATGTGTGGACAGACCTCTCCAGCGAGGACGTTGGCGGGATAGGCATCGCCATCGACCACCATCGACCAACGC
**************************************************......((.............(((..(((((((.(((((((((((((((((..................................................))))))...))))))))...))).)))...))))...)))........))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 M021
embryo
 V042
embryo
 V057
head
.........................................................................................................................................................................................................................ATAGGCATCGCCATCGACC............... 19 0 1 1.00 1 0 1 0 0
.....AACGTCATAATTGGCTCGCAAC................................................................................................................................................................................................................................ 22 1 1 1.00 1 1 0 0 0
...................................................................................................................................................................TGCGGCTAACCCTGAAATGTGTGGACA............................................................. 27 0 1 1.00 1 1 0 0 0
....................................................................CTCCGGAAATAATCACGGT.................................................................................................................................................................... 19 3 20 0.05 1 0 0 1 0
................................................................................................................................................................................................................GTCGGCGGGATCGGCATGGC....................... 20 3 20 0.05 1 0 0 0 1

Anti-sense strand reads

GTTTGTTGCAGTAGTAACCGAGCGTTGTTGTTGATGTTATTTTATAAGAACGTACAGAGGGGACTTTTGGGGACTTTATGAGTGCCAGACGTACGCCAACAGAGAGGGTAGGGGACAAGGAAGGGTGTATTGGGTATTGTTTAGGTAGTGACGCCGGCTACGTACGCCGATTGGGACTTTACACACCTGTCTGGAGAGGTCGCTCCTGCAACCGCCCTATCCGTAGCGGTAGCTGGTGGTAGCTGGTTGCG
**************************************************......((.............(((..(((((((.(((((((((((((((((..................................................))))))...))))))))...))).)))...))))...)))........))************************************************** 		Read size # Mismatch Hit Count Total Norm Total V057
head
 V111
male body
......................................................................................................................GGAAGGGTGTATTGGGTTTC................................................................................................................. 20 2 2 0.50 1 1 0
.......................................................................................................................GAAGGGGGTATTGGGTAT.................................................................................................................. 18 1 2 0.50 1 1 0
..................................................................................................................................................................................................................................CGGTAGCGGATGATAGCTGG..... 20 3 8 0.13 1 0 1
.......................................................................................................................GAAGGGTGTCTTGGGTTT.................................................................................................................. 18 2 20 0.05 1 1 0
.....................................................................................................................ATGATGGGGGTATTGGGTA................................................................................................................... 19 3 20 0.05 1 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_11:2606531-2606781 + dpe_673 CAA------ACAACGTCATCATTGGCTCG-----------------CAAC----------------------------------------AA--C----AA-----CTA-C-AATAAAATATTCTTGCATGTCTCCC------------------------C-------T-GAAAA-------------------------------CCCC--TGAAATA--CTCA-CGGTCTGCATGCGGTT-GTCTCTCCCATC------CCC--------------T---------------------GTTCCTTCCC-----A---CATA----ACCCATAACAAA-TCCATCACT-------GCGGCCGATGCATGCGG---C---------------------TAACCCTGAAATGTGTG--GA-CAGAC---------------CTCTCCAGCG---AGGACGTTGGCG------GGA----------------------------------------TAGGCATCGCCATCGACCACCA---TC---------------------------------------GACCAACGC
dp5 XL_group3a:2069671-2069921 - CAA------ACAACGTCATCATTGGCTCG-----------------CAAC----------------------------------------AA--C----AA-----CTA-C-AATAAAATATTCTTGCATGTCTCCC------------------------C-------T-GAAAA-------------------------------CCCC--TGAAATA--CTCA-CGGTCTGCATGCGGTT-GTCTCTCCCATC------CCC--------------T---------------------GTTCCTTCCC-----A---CATA----ACCCATAACAAA-TCCATCACT-------GCGGCCGATGCATGCGG---C---------------------TAACCCTGAAATGTGTG--GA-CAGAC---------------CTCTCCAACG---AGGACGTTGGCG------GGA----------------------------------------TAGGCATCGCCATCGACCACCA---TC---------------------------------------GACCAACGC
droWil2 scf2_1100000004909:12101205-12101452 - AAA------AAAAAACAACCAACAACTAA------------------------------------------------------ACC-AAAAA--T----AA-----TTA-T-AATCAAATATT---GT-----------------------------------------------------------------------ACCCATTCCCG------ACAA--AAAT-TGGTTTGCATGTGGTT-TTGCCTTT-GTC------CCC--------------C---------------------ACTTTCCCC-CTG---A----AAACAAAT---TAACA-------------------CCGATA----GATATAG---A---------------------CGAAC-----------------CAAATACCGAT---------AC------------CTTCGACAAGGACGAAATTATACGCAACTATGCGGATCACAATAAACATCTATACGAAAATAGA----------GGTCACTA---TGGCG---------------------------------ATCGACCGAGAC
droVir3 scaffold_12928:1390674-1391000 - CA------------------ATTGGCTCAACTGCAAAATTTGCATGCTCTAAACTTAACAAACACAAAAAAAAAAAAACAA--AAAAAAAAA--C----AA-----ATC-A-AATCGA-TA----ACGATGTCCAAT------------------------CCATCTCACA-----AA---------TATCACAATCC-----CGTGTCCA-TATATATA--CCAACGGTATTGCATGCGGTT-ACCATCTCCACA------TCC--------------T---------------------TACCCGACCC-----C---CAAA----ACCGATAACA-------------------ACGACAAATGCATGCGG---CTCACAGATGTGAACGATGTCA-----AC-----------------------------GAATACGAACCCGATA---CCGTCGATAGCAATGGCATTATACGCAATTATGCAGAC---------------------------CATCGCCGT----------------CCGCGACCACCG-C--------------------C--GAAAATTGG
droMoj3 scaffold_6473:13619135-13619453 + CAA------------------TTGGCTCCACTGCGAAATTTGCATGCTCCAAACATAACAA---CAAAAATCAAAATCTAA--ATC-TAAATTTG----CA-----TTA-A-ATTCGAATA----TCGATGTCCAAT------------------------CCATTTGCCT-----AA---------TATCCCCATCC-----TATATCCA----TATAT--GCCG-GGTTTTGCATGCGGTC-TATTACCA-------------------TTACCCTGTCCG----------A-AATCCTTTCCTTGCCC-----TT-----------T---CAACA-------------------CCGGTAAACGTACGCGGCCGCTAACAGATCCGAACGATATCG-----GAAA------CAAC-A----TCGATGACGA---------------TG---TGATCGATCGTGATGGTATTATACGCCAATA-------------------------------------------TGGAGACCA---TCGCC---------------------------------ATCCTCCGCCGG
droGri2 scaffold_15203:8342667-8342990 + T---------------------TGGCTCAACTGCAAAATTTGCATGCAAAA------------------AAAAAAACTTATAAACG-AATAA--A----AA-----TTA-A-AATCAAA-----CTTAATGTCCAAT------------------------CCATCCCCCA-----AT---------AATCCCTATCC-----CCTATTCA---TAAACA--TCACCGGTTTCGCATGCGGAC-ACAA-------A------CCC--------------T---------------------TTTCCCGCCC-----AA--AAAT--AAAAAAAAAAAAAA-ACAAAAAAT-------GCGG----------------CTAACAGATTTGAACGAAATCA-----ATGAAAATCGCGAT-A-GAGATAACGAT---------TA------------TTTCGATGGGGATGGCATTATACGAATTTATGCGGACC------------------------------ACCATAGAC----------CCA----------AAATTGGCCGTCACAACGATAACGATAACAATATC
droAna3 scaffold_12929:2304790-2305007 - TGA------ACGA---------CGGCTGAAA-----------------------------------------------------------A----------AAAC---TAAA-C-C----CAAATTGCATGTATTAT------------------------A---------CAAAAA-AACTACTACT-----------ATTCTTAACCC------CCCG--ACCG-TGGTATGCATGTGGTA--CCTCCTG--TT-----ATCGT--A--TTATATCGTCCTGTCCGCGTAAA-TG----TC------C-TTA---A-----------------A-A--------------AAAAACCGA-------------A----------------------------------AACGATG--AA-CAGCA---------------CAATCTGGTG---AAGTAGATCGTG-------------------------------------------------TTGGTATTCCGATCGCTCGT------------------------------------------------CCGCCGT
droBip1 scf7180000396434:297135-297334 - AAA------AAAAA------ACTAACC----------------------------------------------------------------------------------------C----AAAAATGCATGTATTATAACAAAAAAAAAAAAAAAAACTATT--------------------ACTACT-----------ATTTTTAACAC------CCCGACCAAA-TGGTATGCATGTGGTA--CCTCTTG--TA------TCG--------------TCCT------------------GTCCTG-T--------GTCAATA----CTGTATAACGA-----------------------------------AC------------------------------------------AC-CAGCC---------------CAATCTAGTG---AAGAAGATCGGG-------------------------------------------------TTGGTATTCCAATCGGTCGTC------------------------------------------------CGCCGT
droKik1 scf7180000302258:534319-534587 - CAA------TCGA-------TACCGAT-AAC-----------------------------------------------------------GA--TCCAATTTTTAACTAAAA-CTA----AAAACTGCATGAACA-TAATCAATGAAAAAA--------------------------------AAAAA-----------CCCCTTAACCC------ACCG--CCCA-TGGTCTGCATGCGGTT-GTCCTATG--TCACGTAATC--GTGTCGTGTAATGTC--------------------TC------C-TCC--------------ACCGATAACAAAAC--------CTATCGATCGG-------------TCGCT--CGGG---------------------------------AT-TAGACGATGACGAAGAAGG---------GC---CAACGGATGCCG-------------------------------------------------TGGGCATTCCCTTGGGCGGCTATCGCCCACCGCGGCCTCAT-ACC---------------------AGCCG--AC
droFic1 scf7180000453927:194341-194569 - CGA---TCTACGC-------ATTGGTCCAAC-----------------------------------------------------------GA--A----TATATT---A-TA-ATATAATATAAATGCATGACTTAT------------------------C---------GAA----------AACT-----------TCCCCTAACCCC----TAAAA--CCCA-TGGTCTGCATGTGGGTTGTCT--------------------ATCGTAAATCGTGTA----------A-TGTCCCGTCCT-----------------T----ATCGAAATCGA-AA--------CTAACAACCGG-------------GCAAG---------------------------------------AG-CAGCCGACGGCGA---------------AG---AGGAGGATAGTG-------------------------------------------------TGGGCATACCAATTGGCCACCACCGCCCGC---------------------------------AGAG------GC
droEle1 scf7180000491011:710512-710745 - CGACGATCTACGA-------ATTGGCTCAAC-----------------------------------------------------------GA--A----AATAAT---T-AA-A-C----TTAAATGCATGATTTAA------------------------T---------GAAAAC-AA----C-----CCCGACCCCCCACTTAACCCC----AAAAC--CCCA-TGGCCTGCATGCGGCT-GTCT--------------------ATCGTAAAACGTTAA----------A-CC------------C-CCA---A-----------------TCAA-AA--------ATAACAATCGG-------------ACCAT---------------------------------------AA-AAGATGGTGGT---------GAATCCGAAG---AGGAGGATAGTG-------------------------------------------------TGGGCATTCCCATTGGCCACCG---CCCCC---------------------------------AGAGACCGAAGC
droRho1 scf7180000779506:501423-501669 - CAA---TCAACGA-------TTTGGCTCAAC-----------------------------------------------------------GA--A----AATATT---T-AT-A-C----TTAAATGCATGACTTAC------------------------T---------GAAAA----------CC--CCCCGTC--CCACTTAACCA-----CAAAA--CCCA-TGGTCTGCATGAGGCT-ATCTAACG--TG---------TTTATCATAAACCGTAACACACACACACC-CC----TC------C-CCA---A-----------------CCAA-TA--------ATACAAATCGG-------------ACGAT---------------------------------------AA-AAGGTGATGGC---------GAAGCCGAAG---AGGAGGATAGTG-------------------------------------------------TGGGCATTCCCATTGGTCACCA---TCCGC---------------------------------AGAGACCGACGT
droBia1 scf7180000301760:4772260-4772463 + --------------------ATTGGCCCAAC-----------------------------------------------------------AA--T----AATATT---A-CA-T-A----TTAAATGCATGTGCTAA------------------------T---------GAA-----------AC------------CCCCTTAACCCA--AAAAAAA--CCCG-TGGTCTGCATGCGGTT-GTCTCATG--T--------CGTGAACCGTATATCGTAA-----------A-CC----C-------C-CCA---A-----------------TCAA-T-CAA-----CTAATAATCGG-------------ACGAT---------------------------------------AA-CAGCCG---------------------AGG---AGGAGGATAGTG-------------------------------------------------TGGGCATACCCATTGGCCACCA---CCCGC---------------------------------AGA------TTT
droTak1 scf7180000415151:413713-413928 + T------CTACAA-------ATTGGCCCAAC-----------------------------------------------------------AA--T----AATATT---A-AA-C-C----TAAAATGCATGTGCTAT------------------------A---------AAAAAA-A-----CCCC-----------CCACTTAACCCC----AAAAA--CCCG-TGGTCTGCATGCGGTT-GTCT--------------------ATCATAAATCGTAA-----------A-TG----C---------CC---AA---AAA----A------TCGA-AAC-------TAAACAATCGG-------------ACGAT---------------------------------------AA-CAGCCGA---------------------GGAGGAGGAAGATAGTG-------------------------------------------------TGGGCATTCCCATTGGCCGTCC---ACCGC---------------------------------AGAGGCCAGCGC
droEug1 scf7180000409277:77900-78121 - CGA---TCTACGA---A---ATTGGCGAAAC-----------------------------------------------------------GA--T----AATATT---A-TA-ACC----TAAAATGCATGATTTAT------------------------C---------GAAAAA------AAACC-----------CCTAATAACCTTA-AAAAAAA--TCCA-TGGTCTGCATGCGGTT-TTCCCATG--TG------CC------CGTCTATCGTAA-----------A-CC----C---------CC----A-----------------TCAA-AA--------CTAATAATCGG-------------ACGAT---------------------------------------AAACAG------GCGA---------------AG---AGGTGGATAGCG-------------------------------------------------TGGGCATACCCATTGGCCATTA---TCCGC---------------------------------CTAGGCCAGCAC
dm3 chrX:2393649-2393870 - T------CTACGA-------ATTGGCTCAACC----------------------------------------------------------GA--C----TTTTTTAA-A-AA-A-A----TTAAATGCATGTGCTAT------------------------C--------------------AATACT-----------CCCCCTAACCC------AAAA--TCCG-TGGTCTGCATGCGGTT-GTCTCATG--TG------CCGTGTATCGTTAATCGTAA-----------A-CC----T---------TCA---A-----------------CCAA-AA--------TTAATAACCGG-------------ACGAT---------------------------------------GA-CAGTCGAAGGAGA---------------AG---AGGAGGATAGGG-------------------------------------------------TGGGCATACCCATTGGCCACCA---GCCGT---------------------------------GGAGGCCAGCGT
droSim2 x:2207560-2207777 - dsi_14524 T------CTACGA-------ATTGGCTCAAC-----------------------------------------------------------GA--A----TTTT-T---A-AA-A-A----TTAAATGCATGTGCTAT------------------------C--------------------AATACT-----------CCCCCTAACCC------AAAA--TCCG-TGGTCTGCATGCGGTT-GTCTCATG--TG------CCGTGAATCGTTAATCGTAA-----------A-CC----C---------TCA---A-----------------CCAA-AA--------TTAATAACCGG-------------ACGAT---------------------------------------AA-CAGTCGAAGACGA---------------AG---AGGAGGATAGGG-------------------------------------------------TGGGCATACCCATTGGCCACCA---GCCGC---------------------------------GGAGGCCAGCGT
droSec2 scaffold_10:2169070-2169114 - ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATAGGG-------------------------------------------------TGGGCATACCCATTGGTCCCCA---GCCGC---------------------------------GGA-GCCAGCGT
droYak3 X:5952006-5952227 + T------CTACAA-------ATTGGCTCAAC-----------------------------------------------------------GA--C----TTTTTT---T-AA-ACC-TAAAAAAATGCATGTGTTAT------------------------C--------------------AATACT-----------CCCCCTAACCC------AAAA--TCCG-TGGTCTGCATGCGGTT-CT--ACTG--TG------CCGTCTATCGTAAATCGTAA-----------A-CC----T---------CCGTCAA-------------------AA-AA--------TTAATACCCGG-------------ACGAT---------------------------------------AA-CAGTCGAAGGCGA---------------AG---AGCAGGATAGTG-------------------------------------------------TGGGCATACCCATTGGCCACCA---ACCGC---------------------------------GAAGGCCAGCGC
droEre2 scaffold_4644:2342852-2343074 - T------CTACGA-------ATTGGCTCAAC-----------------------------------------------------------GA--C----TTTTTC---A-AA-A-C-TTCATAAATGCATGTGTTAT------------------------C--------------------AATACT-----------ACCCCTAACCC------AAAA--TCCG-TGGTCTGCATGCGGTT-GTCTCATG--TG------CCGTGTATCGTAAATCGTAA-----------AACC----T---------CCA---T-----------------CCAA-AA--------TTAATAACCGG-------------ACGAT---------------------------------------AA-CAGCCGAAGGCGA---------------AG---AGGAGGATAGTG-------------------------------------------------TGGGCATACCCATTGGCCACCA---ACCGC---------------------------------GGAGGCCACCGC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
CAA------ACAACGTCATCATTGGCTCG-----------------CAAC----------------------------------------AA--C----AA-----CTA-C-AATAAAATATTCTTGCATGTCTCCC------------------------C-------T-GAAAA-------------------------------CCCC--TGAAATA--CTCA-CGGTCTGCATGCGGTT-GTCTCTCCCATC------CCC--------------T---------------------GTTCCTTCCC-----A---CATA----ACCCATAACAAA-TCCATCACT-------GCGGCCGATGCATGCGG---C---------------------TAACCCTGAAATGTGTG--GA-CAGAC---------------CTCTCCAGCG---AGGACGTTGGCG------GGA----------------------------------------TAGGCATCGCCATCGACCACCA---TC---------------------------------------GACCAACGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----------------------------------------TAGGCATCGCCATCGACC.........................................................1911.001100000
.................................................................................................................................................................................................................................................................................................................................................................................TGCGG---C---------------------TAACCCTGAAATGTGTG--GA-CA.......................................................................................................................................................................2711.001010000
dp5
CAA------ACAACGTCATCATTGGCTCG-----------------CAAC----------------------------------------AA--C----AA-----CTA-C-AATAAAATATTCTTGCATGTCTCCC------------------------C-------T-GAAAA-------------------------------CCCC--TGAAATA--CTCA-CGGTCTGCATGCGGTT-GTCTCTCCCATC------CCC--------------T---------------------GTTCCTTCCC-----A---CATA----ACCCATAACAAA-TCCATCACT-------GCGGCCGATGCATGCGG---C---------------------TAACCCTGAAATGTGTG--GA-CAGAC---------------CTCTCCAACG---AGGACGTTGGCG------GGA----------------------------------------TAGGCATCGCCATCGACCACCA---TC---------------------------------------GACCAACGCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGCCATCGACCACCA---TC---------------------------------------.........1911.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---AGGACGTTGGCG------GGA----------------------------------------TAGGCATCGCCAT..............................................................2911.0010010000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GAC---------------CTCTCCAACG---AGGACGTTGGCG------GG....................................................................................................................2711.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCAACG---AGGACGTTGGCG------GGA----------------------------------------TAGG.......................................................................2711.0010100000000
.............................................................................................................................................................................................................................................GCGGTT-GTCTCTCCCATC------C.......................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA----------------------------------------TAGGCATCGCCATCGAC..........................................................1911.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACGTTGGCG------GGA----------------------------------------TAGGC......................................................................1911.0010100000000
..........................................................................................................................................................................................................................TA--CTCA-CGGTCTGCATGT...............................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACG---AGGACGTTGGCG------GGA----------------------------------------TAGG.......................................................................2411.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---AGGACGTTGGCG------GGA----------------------------------------TAGGCATCGCC................................................................2711.0010010000000
droWil2
AAA------AAAAAACAACCAACAACTAA------------------------------------------------------ACC-AAAAA--T----AA-----TTA-T-AATCAAATATT---GT-----------------------------------------------------------------------ACCCATTCCCG------ACAA--AAAT-TGGTTTGCATGTGGTT-TTGCCTTT-GTC------CCC--------------C---------------------ACTTTCCCC-CTG---A----AAACAAAT---TAACA-------------------CCGATA----GATATAG---A---------------------CGAAC-----------------CAAATACCGAT---------AC------------CTTCGACAAGGACGAAATTATACGCAACTATGCGGATCACAATAAACATCTATACGAAAATAGA----------GGTCACTA---TGGCG---------------------------------ATCGACCGAGACSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGAAAATAGA----------GGTCACTA---TGGC..............................................2512.00200110
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGGATCACAATAAACAT......................................................................................2011.00100010
..................................................................................................................................................................................................................................................................................................................................................................................ATAG---A---------------------CGAAC-----------------CAAATACCGAT---------AC------------CTT....................................................................................................................................2611.00100010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGGACGAAATTATACGC..............................................................................................................2111.00100010
..................................................................................................................................................................................................................................................................................................................................................................................ATAG---A---------------------CGAAC-----------------CAAATACCGAT---------A....................................................................................................................................................2211.00100010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGA----------GGTCACTA---TGGCG---------------------------------ATC.........2111.00100010
..................................................................................................................................................................................................................................................................................................................................................................................ATAG---A---------------------CGAAC-----------------CAAATACC.................................................................................................................................................................1811.00100010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGACGAAATTATACGC..............................................................................................................1911.00100010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAAAATAGA----------GGTCACTA---TGGC..............................................2311.00100010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGACGAAATTATACGC..............................................................................................................2011.00110000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTATGCGGATCACAATAAA.........................................................................................2111.00100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACAAGGACGAAATTATACGC..............................................................................................................2211.00100010
droVir3
CA------------------ATTGGCTCAACTGCAAAATTTGCATGCTCTAAACTTAACAAACACAAAAAAAAAAAAACAA--AAAAAAAAA--C----AA-----ATC-A-AATCGA-TA----ACGATGTCCAAT------------------------CCATCTCACA-----AA---------TATCACAATCC-----CGTGTCCA-TATATATA--CCAACGGTATTGCATGCGGTT-ACCATCTCCACA------TCC--------------T---------------------TACCCGACCC-----C---CAAA----ACCGATAACA-------------------ACGACAAATGCATGCGG---CTCACAGATGTGAACGATGTCA-----AC-----------------------------GAATACGAACCCGATA---CCGTCGATAGCAATGGCATTATACGCAATTATGCAGAC---------------------------CATCGCCGT----------------CCGCGACCACCG-C--------------------C--GAAAATTGGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATACGAACCCGATA---CCGT....................................................................................................................................2011.001000100000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................GAACGATGTCA-----AC-----------------------------GAATACGAACCCGA.............................................................................................................................................2711.001000100000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAC---------------------------CATCGCCGT----------------CCGCGAC.......................................2011.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................GATGTCA-----AC-----------------------------GAATACGAACCCGATA---C.......................................................................................................................................2611.001000100000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCAATGGCATTATACGC..............................................................................................................2011.001000000000000000000000000000000000000000000000000000000000001000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTATGCAGAC---------------------------CATCGCCGT----------------CCGCGA........................................2711.001000000000000000100000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAC---------------------------CATCGCCGT----------------CCGCGA........................................1911.001000000000000000001000000000000000000000000000000000000000000000
........................................................AACAAACACAAAAAAAAAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2180.131001000000000000000000000000000000000000000000000000000000000000
droMoj3
CAA------------------TTGGCTCCACTGCGAAATTTGCATGCTCCAAACATAACAA---CAAAAATCAAAATCTAA--ATC-TAAATTTG----CA-----TTA-A-ATTCGAATA----TCGATGTCCAAT------------------------CCATTTGCCT-----AA---------TATCCCCATCC-----TATATCCA----TATAT--GCCG-GGTTTTGCATGCGGTC-TATTACCA-------------------TTACCCTGTCCG----------A-AATCCTTTCCTTGCCC-----TT-----------T---CAACA-------------------CCGGTAAACGTACGCGGCCGCTAACAGATCCGAACGATATCG-----GAAA------CAAC-A----TCGATGACGA---------------TG---TGATCGATCGTGATGGTATTATACGCCAATA-------------------------------------------TGGAGACCA---TCGCC---------------------------------ATCCTCCGCCGGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGATCGTGATGGTATTATACGCC.............................................................................................................2611.001000001
................................................................................................................................................................................................................................................................................................................................................................................................................................................GA---------------TG---TGATCGATCGTGATGGT.......................................................................................................................2111.001000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGACGA---------------TG---TGATCGATCGTG............................................................................................................................2311.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................GA---------------TG---TGATCGATCGTGATGGTA......................................................................................................................2211.001000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGACGA---------------TG---TGATCGATCGT.............................................................................................................................2211.001000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAATA-------------------------------------------TGGAGACCA---TCGCC---------------------------------ATCC........2511.001000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGACCA---TCGCC---------------------------------ATCCTCCGCCG.2311.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---TGATCGATCGTGATGGTA......................................................................................................................1911.001000001
droGri2
T---------------------TGGCTCAACTGCAAAATTTGCATGCAAAA------------------AAAAAAACTTATAAACG-AATAA--A----AA-----TTA-A-AATCAAA-----CTTAATGTCCAAT------------------------CCATCCCCCA-----AT---------AATCCCTATCC-----CCTATTCA---TAAACA--TCACCGGTTTCGCATGCGGAC-ACAA-------A------CCC--------------T---------------------TTTCCCGCCC-----AA--AAAT--AAAAAAAAAAAAAA-ACAAAAAAT-------GCGG----------------CTAACAGATTTGAACGAAATCA-----ATGAAAATCGCGAT-A-GAGATAACGAT---------TA------------TTTCGATGGGGATGGCATTATACGAATTTATGCGGACC------------------------------ACCATAGAC----------CCA----------AAATTGGCCGTCACAACGATAACGATAACAATATCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGCGGACC------------------------------ACCATA.............................................................1911.00110
droAna3
TGA------ACGA---------CGGCTGAAA-----------------------------------------------------------A----------AAAC---TAAA-C-C----CAAATTGCATGTATTAT------------------------A---------CAAAAA-AACTACTACT-----------ATTCTTAACCC------CCCG--ACCG-TGGTATGCATGTGGTA--CCTCCTG--TT-----ATCGT--A--TTATATCGTCCTGTCCGCGTAAA-TG----TC------C-TTA---A-----------------A-A--------------AAAAACCGA-------------A----------------------------------AACGATG--AA-CAGCA---------------CAATCTGGTG---AAGTAGATCGTG-------------------------------------------------TTGGTATTCCGATCGCTCGT------------------------------------------------CCGCCGTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGTG---AAGTAGATCGTG-------------------------------------------------TTGGT......................................................................2311.001010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTCCGATCGCTCGT------------------------------------------------CC.....1911.001010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---AAGTAGATCGTG-------------------------------------------------TTGGTATTCCGAT..............................................................2611.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCGATCGCTCGT------------------------------------------------CCGCCGC2211.001010000
droBip1
AAA------AAAAA------ACTAACC----------------------------------------------------------------------------------------C----AAAAATGCATGTATTATAACAAAAAAAAAAAAAAAAACTATT--------------------ACTACT-----------ATTTTTAACAC------CCCGACCAAA-TGGTATGCATGTGGTA--CCTCTTG--TA------TCG--------------TCCT------------------GTCCTG-T--------GTCAATA----CTGTATAACGA-----------------------------------AC------------------------------------------AC-CAGCC---------------CAATCTAGTG---AAGAAGATCGGG-------------------------------------------------TTGGTATTCCAATCGGTCGTC------------------------------------------------CGCCGTSizeHit CountTotal NormTotal
No Reads
droKik1
CAA------TCGA-------TACCGAT-AAC-----------------------------------------------------------GA--TCCAATTTTTAACTAAAA-CTA----AAAACTGCATGAACA-TAATCAATGAAAAAA--------------------------------AAAAA-----------CCCCTTAACCC------ACCG--CCCA-TGGTCTGCATGCGGTT-GTCCTATG--TCACGTAATC--GTGTCGTGTAATGTC--------------------TC------C-TCC--------------ACCGATAACAAAAC--------CTATCGATCGG-------------TCGCT--CGGG---------------------------------AT-TAGACGATGACGAAGAAGG---------GC---CAACGGATGCCG-------------------------------------------------TGGGCATTCCCTTGGGCGGCTATCGCCCACCGCGGCCTCAT-ACC---------------------AGCCG--ACSizeHit CountTotal NormTotal
No Reads
droFic1
CGA---TCTACGC-------ATTGGTCCAAC-----------------------------------------------------------GA--A----TATATT---A-TA-ATATAATATAAATGCATGACTTAT------------------------C---------GAA----------AACT-----------TCCCCTAACCCC----TAAAA--CCCA-TGGTCTGCATGTGGGTTGTCT--------------------ATCGTAAATCGTGTA----------A-TGTCCCGTCCT-----------------T----ATCGAAATCGA-AA--------CTAACAACCGG-------------GCAAG---------------------------------------AG-CAGCCGACGGCGA---------------AG---AGGAGGATAGTG-------------------------------------------------TGGGCATACCAATTGGCCACCACCGCCCGC---------------------------------AGAG------GCSizeHit CountTotal NormTotal
No Reads
droEle1
CGACGATCTACGA-------ATTGGCTCAAC-----------------------------------------------------------GA--A----AATAAT---T-AA-A-C----TTAAATGCATGATTTAA------------------------T---------GAAAAC-AA----C-----CCCGACCCCCCACTTAACCCC----AAAAC--CCCA-TGGCCTGCATGCGGCT-GTCT--------------------ATCGTAAAACGTTAA----------A-CC------------C-CCA---A-----------------TCAA-AA--------ATAACAATCGG-------------ACCAT---------------------------------------AA-AAGATGGTGGT---------GAATCCGAAG---AGGAGGATAGTG-------------------------------------------------TGGGCATTCCCATTGGCCACCG---CCCCC---------------------------------AGAGACCGAAGCSizeHit CountTotal NormTotal
No Reads
droRho1
CAA---TCAACGA-------TTTGGCTCAAC-----------------------------------------------------------GA--A----AATATT---T-AT-A-C----TTAAATGCATGACTTAC------------------------T---------GAAAA----------CC--CCCCGTC--CCACTTAACCA-----CAAAA--CCCA-TGGTCTGCATGAGGCT-ATCTAACG--TG---------TTTATCATAAACCGTAACACACACACACC-CC----TC------C-CCA---A-----------------CCAA-TA--------ATACAAATCGG-------------ACGAT---------------------------------------AA-AAGGTGATGGC---------GAAGCCGAAG---AGGAGGATAGTG-------------------------------------------------TGGGCATTCCCATTGGTCACCA---TCCGC---------------------------------AGAGACCGACGTSizeHit CountTotal NormTotal
No Reads
droBia1
--------------------ATTGGCCCAAC-----------------------------------------------------------AA--T----AATATT---A-CA-T-A----TTAAATGCATGTGCTAA------------------------T---------GAA-----------AC------------CCCCTTAACCCA--AAAAAAA--CCCG-TGGTCTGCATGCGGTT-GTCTCATG--T--------CGTGAACCGTATATCGTAA-----------A-CC----C-------C-CCA---A-----------------TCAA-T-CAA-----CTAATAATCGG-------------ACGAT---------------------------------------AA-CAGCCG---------------------AGG---AGGAGGATAGTG-------------------------------------------------TGGGCATACCCATTGGCCACCA---CCCGC---------------------------------AGA------TTTSizeHit CountTotal NormTotal
No Reads
droTak1
T------CTACAA-------ATTGGCCCAAC-----------------------------------------------------------AA--T----AATATT---A-AA-C-C----TAAAATGCATGTGCTAT------------------------A---------AAAAAA-A-----CCCC-----------CCACTTAACCCC----AAAAA--CCCG-TGGTCTGCATGCGGTT-GTCT--------------------ATCATAAATCGTAA-----------A-TG----C---------CC---AA---AAA----A------TCGA-AAC-------TAAACAATCGG-------------ACGAT---------------------------------------AA-CAGCCGA---------------------GGAGGAGGAAGATAGTG-------------------------------------------------TGGGCATTCCCATTGGCCGTCC---ACCGC---------------------------------AGAGGCCAGCGCSizeHit CountTotal NormTotal
No Reads
droEug1
CGA---TCTACGA---A---ATTGGCGAAAC-----------------------------------------------------------GA--T----AATATT---A-TA-ACC----TAAAATGCATGATTTAT------------------------C---------GAAAAA------AAACC-----------CCTAATAACCTTA-AAAAAAA--TCCA-TGGTCTGCATGCGGTT-TTCCCATG--TG------CC------CGTCTATCGTAA-----------A-CC----C---------CC----A-----------------TCAA-AA--------CTAATAATCGG-------------ACGAT---------------------------------------AAACAG------GCGA---------------AG---AGGTGGATAGCG-------------------------------------------------TGGGCATACCCATTGGCCATTA---TCCGC---------------------------------CTAGGCCAGCACSizeHit CountTotal NormTotal
No Reads
dm3
T------CTACGA-------ATTGGCTCAACC----------------------------------------------------------GA--C----TTTTTTAA-A-AA-A-A----TTAAATGCATGTGCTAT------------------------C--------------------AATACT-----------CCCCCTAACCC------AAAA--TCCG-TGGTCTGCATGCGGTT-GTCTCATG--TG------CCGTGTATCGTTAATCGTAA-----------A-CC----T---------TCA---A-----------------CCAA-AA--------TTAATAACCGG-------------ACGAT---------------------------------------GA-CAGTCGAAGGAGA---------------AG---AGGAGGATAGGG-------------------------------------------------TGGGCATACCCATTGGCCACCA---GCCGT---------------------------------GGAGGCCAGCGTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................TTAATAACCGG-------------ACGAT---------------------------------------GA-C........................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................AA-AA--------TTAATAACCGG-------------ACGAT---------------------------------------GA-.........................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCA---GCCGT---------------------------------GGAGGCCAGC..1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---AGGAGGATAGGG-------------------------------------------------TGGG.......................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................TTAATAACCGG-------------ACGAT---------------------------------------GA-CAG......................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGA---------------AG---AGGAGGATAGGG-------------------------------------------------T..........................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..........................................................................................................................................................................................................................................................TG--TG------CCGTGTATCGTTAATCGTAA-----------A-CC----.................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................TGCATGCGGTT-GTCTCATG--TG------CCGTGTA.................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................CCAA-AA--------TTAATAACCGG-------------ACGAT---------------------------------------GA-CAG......................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................AA--------TTAATAACCGG-------------ACGAT---------------------------------------GA-CA.......................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---AGGAGGATAGGG-------------------------------------------------TGGGCA.....................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................AA-AA--------TTAATAACCGG-------------ACGAT---------------------------------------G...........................................................................................................................................................................2111.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCA---GCCGT---------------------------------GGAGGCCAGC..2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAGGAGA---------------AG---AGGAG...................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
........................................................................................................................................................................................................................................TGCATGCGGTT-GTCTCATG--TG------C.......................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TGGCTCAACC----------------------------------------------------------GA--C----TTTTTTAA-A-A...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGGATAGGG-------------------------------------------------TGGGCA.....................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
........TACGA-------ATTGGCTCAACC----------------------------------------------------------GA--C----TTTTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................A--------TTAATAACCGG-------------ACGAT---------------------------------------GA-CAG......................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
........................................................................................................................................................................................................................................................CATG--TG------CCGTGTATCGTTAATCGTA.....................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---AGGAGGATAGGG-------------------------------------------------TGGGC......................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
.....................................................................................................................................................................................................................................................TCTCATG--TG------CCGTGTATCGTTAATCGTA.....................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCCATTGGCCACCA---GCCGT---------------------------------GGAGGCC.....2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................TT-GTCTCATG--TG------CCGTGTATCGTTA...........................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---AGGAGGATAGGG-------------------------------------------------TGGGC......................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---AGGAGGATAGGG-------------------------------------------------TGGGCA.....................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................A---A-----------------CCAA-AA--------TTAATAACCGG-------------ACGAT---------------------------------------G...........................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................A-AA--------TTAATAACCGG-------------ACGAT---------------------------------------GA-CAGTC....................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............................................................................................................................................................................................................................................................................................................................................................TAATAACCGG-------------ACGAT---------------------------------------GA-CAGT.....................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................TAACCGG-------------ACGAT---------------------------------------GA-CAGTC....................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................G------CCGTGTATCGTTAATCGTA.....................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................AATAACCGG-------------ACGAT---------------------------------------GA-CAG......................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................GA---------------AG---AGGAGGATAGGG-------------------------------------------------TGGGCAT....................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................AGA---------------AG---AGGAGGATAGGG-------------------------------------------------C..........................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGATAGGG-------------------------------------------------TGGGCAAG...................................................................1860.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
droSim2
T------CTACGA-------ATTGGCTCAAC-----------------------------------------------------------GA--A----TTTT-T---A-AA-A-A----TTAAATGCATGTGCTAT------------------------C--------------------AATACT-----------CCCCCTAACCC------AAAA--TCCG-TGGTCTGCATGCGGTT-GTCTCATG--TG------CCGTGAATCGTTAATCGTAA-----------A-CC----C---------TCA---A-----------------CCAA-AA--------TTAATAACCGG-------------ACGAT---------------------------------------AA-CAGTCGAAGACGA---------------AG---AGGAGGATAGGG-------------------------------------------------TGGGCATACCCATTGGCCACCA---GCCGC---------------------------------GGAGGCCAGCGTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................................................................................................................................................................................................................................................ATAACCGG-------------ACGAT---------------------------------------AA-CAGTCGAAGACGA---------------.............................................................................................................................................2811.00100000000000100000
................................................................................................................................................................................................................................................................................................................................................CAA-AA--------TTAATAACCGG-------------ACGAT---------------------------------------AA-C........................................................................................................................................................................2411.00100100000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................T---------------------------------------AA-CAGTCGAAGACGA---------------AG---AGGAGGATA...............................................................................................................................2711.00100000000100000000
droSec2
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATAGGG-------------------------------------------------TGGGCATACCCATTGGTCCCCA---GCCGC---------------------------------GGA-GCCAGCGTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
T------CTACAA-------ATTGGCTCAAC-----------------------------------------------------------GA--C----TTTTTT---T-AA-ACC-TAAAAAAATGCATGTGTTAT------------------------C--------------------AATACT-----------CCCCCTAACCC------AAAA--TCCG-TGGTCTGCATGCGGTT-CT--ACTG--TG------CCGTCTATCGTAAATCGTAA-----------A-CC----T---------CCGTCAA-------------------AA-AA--------TTAATACCCGG-------------ACGAT---------------------------------------AA-CAGTCGAAGGCGA---------------AG---AGCAGGATAGTG-------------------------------------------------TGGGCATACCCATTGGCCACCA---ACCGC---------------------------------GAAGGCCAGCGCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCA---ACCGC---------------------------------GAAGGCCAG...1811.00100010000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAGGCGA---------------AG---AGCAGGATAGTG-------------------------------------------------TG.........................................................................2711.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAGGCGA---------------AG---AGCAGGATAGTG-------------------------------------------------TG.........................................................................2511.00100100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATAGTG-------------------------------------------------TGGGCATACCCATT.............................................................2411.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCA---ACCGC---------------------------------GAAGGCCAGC..2011.00100100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-------------------------------------------------TGGGCATACCCATTGGCC.........................................................2011.00100100000000
........................................................................................................................................................................................................................................................................................................................................................................................GAT---------------------------------------AA-CAGTCGAAGGCGA---------------AG---AG......................................................................................................................................2211.00100100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTG-------------------------------------------------TGGGCATACCCATT.............................................................2011.00101000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................GA---------------AG---AGCAGGATAGTG-------------------------------------------------TGGGC......................................................................2111.00100100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCA---ACCGC---------------------------------GAAGGCCAGCGC2211.00100100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATACCCATTGGCCACCA---ACCGC---------------------------------............2311.00100100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGATAGTG-------------------------------------------------TGGGCATACCCATTGGC..........................................................2811.00100000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTG-------------------------------------------------TGGGCATACCCATTGGC..........................................................2211.00100100000000
droEre2
T------CTACGA-------ATTGGCTCAAC-----------------------------------------------------------GA--C----TTTTTC---A-AA-A-C-TTCATAAATGCATGTGTTAT------------------------C--------------------AATACT-----------ACCCCTAACCC------AAAA--TCCG-TGGTCTGCATGCGGTT-GTCTCATG--TG------CCGTGTATCGTAAATCGTAA-----------AACC----T---------CCA---T-----------------CCAA-AA--------TTAATAACCGG-------------ACGAT---------------------------------------AA-CAGCCGAAGGCGA---------------AG---AGGAGGATAGTG-------------------------------------------------TGGGCATACCCATTGGCCACCA---ACCGC---------------------------------GGAGGCCACCGCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTG-------------------------------------------------TGGGCATACCCATTGGC..........................................................2311.0010000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAGTG-------------------------------------------------TGGGCATACCCATT.............................................................2111.0010000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---AGGAGGATAGTG-------------------------------------------------TGGGC......................................................................1811.0010000100
................................................................................................................................................................................................................................................................................................................................................................................................................................................GA---------------AG---AGGAGGATAGTG-------------------------------------------------TGGGC......................................................................2111.0010000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCCATTGGCCACCA---ACCGC---------------------------------GGAGGC......2811.0010100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATACCCATTGGCCACCA---ACCGC---------------------------------GGAGGC......2911.0010100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................GA---------------AG---AGGAGGATAGTG-------------------------------------------------TGG........................................................................1911.0010001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGGCCACCA---ACCGC---------------------------------GGAG........2111.0010100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATACCCATTGGCCACC......................................................1911.0011000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAGGCGA---------------AG---AGGAGGATAGT.............................................................................................................................2211.0010001000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGGATAGTG-------------------------------------------------TGGGCATACCC................................................................2311.0010000001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATAGTG-------------------------------------------------TGGGCATACCCATT.............................................................2211.0010000100

Generated: 06/08/2015 at 03:00 PM