dpe_670

Name	Class	Family	Strand
DMCR1A	LINE	CR1	-

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CCTGCACCACCGGATATTGCCATCACTGGTACCAGGCCAGGCCATCACTGGTAAGTCGACTTAAAGGTGGCGCAATTTATCTTCTCTTATGCCATGGAGCCTCTTTAAAGATAAGCGTCTTCCCAACTCAATTCGATACCATTTGTTTTGCACAATTTTGGCGAGAGCATTTGGTTGTGAAGGAGTTTAAGGCTAAGAAGAATGTTAGGCTTCCCATAACGCTCTCGGATCAAAATTACCCCAATGTGCCG ************************************************...((((........((.(((((...(((((((((((........))))........))))))))))))..)).(((((..((((..((((..((((((((.((....)))).))))))..))))..)))).)))))...)))).......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V111 male body	V057 head
.............................................................................................................................................................................GTTGTGAAGGAGTTTAAGG...........................................................	19	0	4	0.25	1	1	0
.......................................................................................................................................ATACCATTTGCTTTGCATTA................................................................................................	20	3	20	0.05	1	0	1

GGACGTGGTGGCCTATAACGGTAGTGACCATGGTCCGGTCCGGTAGTGACCATTCAGCTGAATTTCCACCGCGTTAAATAGAAGAGAATACGGTACCTCGGAGAAATTTCTATTCGCAGAAGGGTTGAGTTAAGCTATGGTAAACAAAACGTGTTAAAACCGCTCTCGTAAACCAACACTTCCTCAAATTCCGATTCTTCTTACAATCCGAAGGGTATTGCGAGAGCCTAGTTTTAATGGGGTTACACGGC ************************************************...((((........((.(((((...(((((((((((........))))........))))))))))))..)).(((((..((((..((((..((((((((.((....)))).))))))..))))..)))).)))))...)))).......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V111 male body	M042 female body
.........................................................................................................................GGGTTGAGTTAAGCTATGGT..............................................................................................................	20	0	1	1.00	1	1	0
................................................................................................................................................................................CACTTCCTCAAATTCCGATT.......................................................	20	0	20	0.05	1	0	1

Species	Coordinate	ID	Alignment
droPer2	scaffold_11:2382007-2382257 -	dpe_670	CCTGCACCACCGGATATTGCC--ATCACTGGTACCAGGCCA------GGCCATCACTGGTA-AGTCGACTTAAAGGTGGCGCAATTTATCTTCTCTTATGCCATGGAG----CCTCTTTAAAGATAAGCGTCTTCCCAACTCAATTCGATACCATTTGTTTTGCACAATTTTGGCGAGAGCATTTGGTTGTGAAGGAGTTTAAGGCTAAGAAGAATGTTAGG------CTTCCCATA------ACGCTCTCGGATCAAAATTACCCCAATGTGCCG
dp5	XL_group3a:2298077-2298327 +	dps_2870	CCTGCACCACCGGATATTGCC--ATCACTGGTACCAGGCCA------GGCCATCACTGGTA-AGTCGACTTAAAGGTGGCGCAATTTATCCTCTCTTATGCCATGGAG----CCTCTTTAAAGATAAGCGTCTTCCCAACTCAATTCGATACCATTTGTTTTGCACAATTTTGGCGAGAGCATTTGGTTGTGAAGGAGTTTAAGGCTAAGAAGAATGTTAGG------CTTCCCATA------ACGCTCTCGGATCAAAATTACCCCAATGTGCCG
droWil2	scf2_1100000004936:347808-347981 +		--------------------------------------------------------------------------GGTGGAAAAGTTCAGATTTTCATATACTCGGGACATTTCGTCCTTCAAAATAAGTGTCTTCCCAGATCCTTTTGTCCAAATATGTCATTCATTTTTTTGGCCGGAACACCTTATTGTAAAAGAGTATACA-CAAAAAAGAAGATTCGG------CCTCCGATT------AGCCT---------------GCTACCTGCCTCT
droKik1	scf7180000298305:535-791 -		C-------ATCGGAAGATGTC--ATAGCTTTTATC----CAAGGCAAAGCAAAAGTCGATAGAGGAAAAATTAAGGTGGAAAAATTTAAATTTTCTTACCCCAGGAACATTTCGTCTTTCAAGATAAATGTTCCTGACGAAGTCTTTGGCACTCTATGCTCTGCGGAAACCTGGCCACAGTATGTGGTTGTCAAAGAGTTTGAAGGTACGAAAAAGAA------AAAGCGGCCTGTAAGAATTACTCTTCCTAGGCCAGATTTGCCCAATGCTCCG
droRho1	scf7180000772162:1044-1313 -		TCTCCACCACTAGGGACTACTGAGTCAGGACAACCGGATCAAGACAAAACTAAAGCCGATTGTAATAGTGTAAAGGTGGAAAAGTTTAAGTTTTCTTATGCTAGAGACATTTCATCTTTCAAGATAACTGTCCCTAACGAGCTTTTTGAAGTCATATGCTCGGGCGACTTTTGGCCGGATAATATGGTTGTAAAAGAGTTCGAGGCTAAGATAAAGAA------GAAGGGGCCCGTGGGAGTAAAACTTCCTAGTCGAGGCCAAACCAGTGTACCA
droSec2	scaffold_3197:986-1210 +		T-------------------------------A------CAAGACAAAACCAAAGCCGATA------ATATAAAAGTGGAAAAATTTAACTTCTCTTACGCTAGGGACATATCATCTTTCAAGATAACTGTCCCAAACGAGCTCTTTTCGACCATATGTTCGGGTGATTTTTGGCCGGATAGTATGGTGGTGAAAGAGTTTGAAGCTAAGATCAAAAATAAGAAAAAGGTGCCCGTGGGAATTAAACTTCCCTCACGTGGCCAGA--------CCA
droYak3	v2_chr2L_random_028:709500-709697 +		C-----------------------------------------------------------------AACATAAAAGTGGAAAAATTTAACTTTTCTTATGCTAGGGACATCTCATCTTTCAAGATAACTGTCCCAAATGAGCTATTCTCAACCATATGTTCTGGTGATTTTTGGCCGAAAAGTATGATTGTGAAAGAGTTTGAAGCTAAGATTAAAAATAGGATAAAAAGGCCCGTGGGAATTAAACTTCCCACAAGTG-------------GCCA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droPer2

CCTGCACCACCGGATATTGCC--ATCACTGGTACCAGGCCA------GGCCATCACTGGTA-AGTCGACTTAAAGGTGGCGCAATTTATCTTCTCTTATGCCATGGAG----CCTCTTTAAAGATAAGCGTCTTCCCAACTCAATTCGATACCATTTGTTTTGCACAATTTTGGCGAGAGCATTTGGTTGTGAAGGAGTTTAAGGCTAAGAAGAATGTTAGG------CTTCCCATA------ACGCTCTCGGATCAAAATTACCCCAATGTGCCG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..........................................................................................................................................................................................GTTGTGAAGGAGTTTAAGG.......................................................................	19	4	0.25	1	0	0	0	0	0	1

dp5

CCTGCACCACCGGATATTGCC--ATCACTGGTACCAGGCCA------GGCCATCACTGGTA-AGTCGACTTAAAGGTGGCGCAATTTATCCTCTCTTATGCCATGGAG----CCTCTTTAAAGATAAGCGTCTTCCCAACTCAATTCGATACCATTTGTTTTGCACAATTTTGGCGAGAGCATTTGGTTGTGAAGGAGTTTAAGGCTAAGAAGAATGTTAGG------CTTCCCATA------ACGCTCTCGGATCAAAATTACCCCAATGTGCCG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
................................................................................................................................................................................................AAGGAGTTTAAGGCTAAGAAGA..............................................................	22	20	9.65	193	0	187	0	0	2	0	0	0	4	0
................................................................................................................................................................................................AAGGAGTTTAAGGCTAAGAAG...............................................................	21	20	6.80	136	0	121	0	0	1	0	0	14	0	0
................................................................................................................................................................................................AAGGAGTTTAAGGCTAAGAAGAA.............................................................	23	20	2.35	47	0	0	0	0	0	0	5	42	0	0
................................................................................................................................................................................................AAGGAGTTTAAGGCTAAGA.................................................................	19	20	2.05	41	0	40	0	0	0	0	0	0	1	0
................................................................................................................................................................................................AAGGAGTTTAAGGCTAAGAA................................................................	20	20	1.45	29	0	24	0	0	0	0	0	3	2	0
................................................................................................................................................................................................AAGGAGTTTAAGGCTAAG..................................................................	18	20	0.40	8	0	7	0	0	0	0	0	1	0	0
................................................................................................................................................................................................AAGGAGTTTAAGGCTAAGAAGAG.............................................................	23	20	0.20	4	0	3	1	0	0	0	0	0	0	0
................................................................................................................................................................................................AAGGAGTTTAAGGCTAAGAAGAC.............................................................	23	20	0.15	3	0	0	0	0	0	0	0	3	0	0
.................................................................................................................................................................................................AGGAGTTTAAGGCTAAGAAGA..............................................................	21	20	0.10	2	0	0	0	0	0	0	0	2	0	0
..................................................................................................................................................................................................GGAGTTTAAGGCTAAGAAG...............................................................	19	20	0.10	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................GGAGTTTAAGGCTAAGAAGA..............................................................	20	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................GTGAAGGAGTTTAAGGCTAA...................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................AAGGAGTTTAAGGCTAAGAAGC..............................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................GGAGTTTAAGGCTAAGAAGAA.............................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................GAAGGAGTTTAAGGCTAAGAAGA..............................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0
.................................................................................................................................................................................................AGGAGTTTAAGGCTAAGAAC...............................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................GAAGGAGTTTAAGGCTAAGAAGAA.............................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droWil2

--------------------------------------------------------------------------GGTGGAAAAGTTCAGATTTTCATATACTCGGGACATTTCGTCCTTCAAAATAAGTGTCTTCCCAGATCCTTTTGTCCAAATATGTCATTCATTTTTTTGGCCGGAACACCTTATTGTAAAAGAGTATACA-CAAAAAAGAAGATTCGG------CCTCCGATT------AGCCT---------------GCTACCTGCCTCT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..................................................................................................................................................TGTCCAAATATGTCATTCATTTTT..........................................................................................................	24	1	1.00	1	0	1	0	0	0
............................................................................................TTCATATACTCGGGACATTTCGTCC...............................................................................................................................................................	25	20	0.35	7	0	0	0	7	0
...........................................................................................TTTCATATACTCGGGACATTTCGTC................................................................................................................................................................	25	20	0.10	2	0	0	0	2	0
............................................................................................TTCATATACTCGGGACATTTCGT.................................................................................................................................................................	23	20	0.10	2	0	2	0	0	0
.............................................................................................TCATATACTCGGGACATTTCGTCCT..............................................................................................................................................................	25	20	0.10	2	0	2	0	0	0
...............................................................................................ATATACTCGGGACATTTCGTC................................................................................................................................................................	21	20	0.10	2	0	0	0	1	1
.............................................................................................TCATATACTCGGGACATTTCG..................................................................................................................................................................	21	20	0.10	2	0	2	0	0	0
.........................................................................................................................................................................TTTGGCCGGAACACCTTATTGTAAAAGA...............................................................................	28	15	0.07	1	0	1	0	0	0
..........................................................................................TTTTCATATACTCGGGACATTTCG..................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
................................................................................................TATACTCGGGACATTTCG..................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0
.........................................................................................................................................................................TTTGGCCGGAACACCTTATA.......................................................................................	20	20	0.05	1	0	1	0	0	0
............................................................................................TTCATATACTCGGGACATTTC...................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
.............................................................................................TCATATACTCGGGACATTTCGTC................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0

droKik1

C-------ATCGGAAGATGTC--ATAGCTTTTATC----CAAGGCAAAGCAAAAGTCGATAGAGGAAAAATTAAGGTGGAAAAATTTAAATTTTCTTACCCCAGGAACATTTCGTCTTTCAAGATAAATGTTCCTGACGAAGTCTTTGGCACTCTATGCTCTGCGGAAACCTGGCCACAGTATGTGGTTGTCAAAGAGTTTGAAGGTACGAAAAAGAA------AAAGCGGCCTGTAAGAATTACTCTTCCTAGGCCAGATTTGCCCAATGCTCCG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TCTCCACCACTAGGGACTACTGAGTCAGGACAACCGGATCAAGACAAAACTAAAGCCGATTGTAATAGTGTAAAGGTGGAAAAGTTTAAGTTTTCTTATGCTAGAGACATTTCATCTTTCAAGATAACTGTCCCTAACGAGCTTTTTGAAGTCATATGCTCGGGCGACTTTTGGCCGGATAATATGGTTGTAAAAGAGTTCGAGGCTAAGATAAAGAA------GAAGGGGCCCGTGGGAGTAAAACTTCCTAGTCGAGGCCAAACCAGTGTACCA	Size	Hit Count	Total Norm	Total
No Reads

droSec2

T-------------------------------A------CAAGACAAAACCAAAGCCGATA------ATATAAAAGTGGAAAAATTTAACTTCTCTTACGCTAGGGACATATCATCTTTCAAGATAACTGTCCCAAACGAGCTCTTTTCGACCATATGTTCGGGTGATTTTTGGCCGGATAGTATGGTGGTGAAAGAGTTTGAAGCTAAGATCAAAAATAAGAAAAAGGTGCCCGTGGGAATTAAACTTCCCTCACGTGGCCAGA--------CCA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
....................................................................................................................TTTCAAGATAACTGTCCCAAACGAGC......................................................................................................................................	26	20	5.15	103	102	1	0	0
....................................................................................................................TTTCAAGATAACTGTCCCAAACGA........................................................................................................................................	24	20	1.55	31	31	0	0	0
....................................................................................................................TTTCAAGATAACTGTCCCAAACGAGCT.....................................................................................................................................	27	20	0.70	14	14	0	0	0
..........................................................................................................................................................................................................AAGCTAAGATCAAAAATAAGAAAAAGG...............................................	27	20	0.50	10	10	0	0	0
.....................................................................................................................TTCAAGATAACTGTCCCAAACGAGC......................................................................................................................................	25	20	0.35	7	7	0	0	0
...............................................................................................................................................................................................................................................AATTAAACTTCCCTCACGTGGC...............	22	20	0.30	6	6	0	0	0
............................................................................................................................................................................................................GCTAAGATCAAAAATAAGAAAAAGG...............................................	25	20	0.25	5	0	0	0	5
................................................................................................................................................TTTTCGACCATATGTTCGGGTGATT...........................................................................................................	25	20	0.25	5	5	0	0	0
............................................................................TGGAAAAATTTAACTTCTCTTACGC...............................................................................................................................................................................	25	20	0.20	4	4	0	0	0
....................................................................................................................................................CGACCATATGTTCGGGTGATTTTTGGC.....................................................................................................	27	20	0.10	2	2	0	0	0
..........................................................................................................................................................................................................AAGCTAAGATCAAAAATAAGAAAA..................................................	24	20	0.10	2	2	0	0	0
....................................................................................................................TTTCAAGATAACTGTCCCAAACGAG.......................................................................................................................................	25	20	0.10	2	0	1	0	1
..................................................................................................................................TCCCAAACGAGCTCTTTTCGACCATA........................................................................................................................	26	20	0.10	2	0	0	2	0
..............................................................................................................................................TCTTTTCGACCATATGTTCGGGTGATTT..........................................................................................................	28	20	0.10	2	2	0	0	0
..................................................................................................................................................TTCGACCATATGTTCGGGTGATTTT.........................................................................................................	25	20	0.10	2	2	0	0	0
....................................................................TATAAAAGTGGAAAAATTTAACTTC.......................................................................................................................................................................................	25	20	0.05	1	0	0	1	0
...................................................................................................................................................................................................................TCAAAAATAAGAAAAAGGTGCCCGTGG......................................	27	20	0.05	1	1	0	0	0
.......................................................................................................................CAAGATAACTGTCCCAAACGAGC......................................................................................................................................	23	20	0.05	1	0	0	0	1
.........................................................................................................................................................ATATGTTCGGGTGATTTTTGG......................................................................................................	21	20	0.05	1	0	1	0	0
............................................................................TGGAAAAATTTAACTTCTCTTAC.................................................................................................................................................................................	23	20	0.05	1	1	0	0	0
................................................................................................................................................................................................................................................ATTAAACTTCCCTCACGTGGCCAGA--------...	25	20	0.05	1	1	0	0	0
..................................................................................................................................................................GGTGATTTTTGGCCGGATAGTATGG.........................................................................................	25	20	0.05	1	1	0	0	0
................................................................................AAAATTTAACTTCTCTTACGC...............................................................................................................................................................................	21	20	0.05	1	1	0	0	0
......................................................................................TAACTTCTCTTACGCTAGGGACATATCA..................................................................................................................................................................	28	20	0.05	1	0	0	1	0
....................................................................TATAAAAGTGGAAAAATTTAACTTCTC.....................................................................................................................................................................................	27	20	0.05	1	0	0	0	1
....................................................................................................................................................................TGATTTTTGGCCGGATAGTATGGTGGT.....................................................................................	27	20	0.05	1	0	0	1	0
...................................................................................................................................................TCGACCATATGTTCGGGTGATTTT.........................................................................................................	24	20	0.05	1	1	0	0	0
.......................................................................................AACTTCTCTTACGCTAGGGACATATCA..................................................................................................................................................................	27	20	0.05	1	1	0	0	0
...............................................................................................TTACGCTAGGGACATATCATC................................................................................................................................................................	21	20	0.05	1	0	1	0	0
...................................................................................................................CTTTCAAGATAACTGTCCCAAACGAGC......................................................................................................................................	27	20	0.05	1	0	0	1	0
...................................................................................................................CTTTCAAGATAACTGTCCCAAACG.........................................................................................................................................	24	20	0.05	1	1	0	0	0
..................................................................................................................................................................GGTGATTTTTGGCCGGATAGTAT...........................................................................................	23	20	0.05	1	1	0	0	0
....................................................................................................................TTTCAAGATAACTGTCCCAAACG.........................................................................................................................................	23	20	0.05	1	0	0	1	0
.............................................................................................TCTTACGCTAGGGACATATCATCTTT.............................................................................................................................................................	26	20	0.05	1	1	0	0	0
..........................................................................................................................................................................................................AAGCTAAGATCAAAAATAAGAAAAAGT...............................................	27	20	0.05	1	1	0	0	0
..........................................................................................................................................................TATGTTCGGGTGATTTTTGGCCGGA.................................................................................................	25	20	0.05	1	0	0	1	0
.......................................................CCGATA------ATATAAAAGTGGAAAAA................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0
....................................................................................................................................................CGACCATATGTTCGGGTGATTTTTGG......................................................................................................	26	20	0.05	1	1	0	0	0

droYak3

C-----------------------------------------------------------------AACATAAAAGTGGAAAAATTTAACTTTTCTTATGCTAGGGACATCTCATCTTTCAAGATAACTGTCCCAAATGAGCTATTCTCAACCATATGTTCTGGTGATTTTTGGCCGAAAAGTATGATTGTGAAAGAGTTTGAAGCTAAGATTAAAAATAGGATAAAAAGGCCCGTGGGAATTAAACTTCCCACAAGTG-------------GCCA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
............................................................................................................................................GCTATTCTCAACCATATGTTCTGGT...............................................................................................................	25	20	0.65	13	0	0	0	0	0	0	0	0	0	0	13
...............................................................................................................................................................................................................................TAAAAAGGCCCGTGGGAATTAAACT............................	25	7	0.43	3	0	0	3	0	0	0	0	0	0	0	0
.......................................................................................................................................................CCATATGTTCTGGTGATTTTTGGCC....................................................................................................	25	20	0.35	7	0	0	7	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TGGGAATTAAACTTCCCACAAGTG-------------GCC.	27	20	0.30	6	0	1	5	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................TAAAAAGGCCCGTGGGAATTAAACTTC..........................	27	7	0.29	2	0	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................GATTGTGAAAGAGTTTGAAGCTAAGAT................................................................	27	20	0.20	4	0	2	0	0	0	0	0	0	0	0	2
...........................................................................................................................................AGCTATTCTCAACCATATGTTCTGG................................................................................................................	25	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
...............................................................................................................TCATCTTTCAAGATAACTGTCCC..............................................................................................................................................	23	20	0.15	3	0	2	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................TAAAAAGGCCCGTGGGAATTAAACC............................	25	7	0.14	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................GATTAAAAATAGGATAAAAAGGC............................................	23	8	0.13	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................TAGGATAAAAAGGCCCGTGGGAAT..................................	24	9	0.11	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................TATGATTGTGAAAGAGTTTGAAGCT.....................................................................	25	20	0.10	2	0	0	0	1	0	0	1	0	0	0	0
......................................................................................................................................................................................................TTTGAAGCTAAGATTAAAAATAGGA.....................................................	25	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................TCATCTTTCAAGATAACTGTCCCAAA...........................................................................................................................................	26	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
....................................................................................................................TTTCAAGATAACTGTCCCAAATGAGC......................................................................................................................................	26	20	0.10	2	0	1	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................TCTGGTGATTTTTGGCCGAAAC...............................................................................................	22	10	0.10	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................CCGAAAAGTATGATTGTGAAAGAGT.............................................................................	25	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................GCTATTCTCAACCATATGTTCTGG................................................................................................................	24	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................AGGCCCGTGGGAATTAAACTTC..........................	22	11	0.09	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................TCTTATGCTAGGGACATCTCATCTTTC............................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................GATTGTGAAAGAGTTTGAAGCTA....................................................................	23	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................TCTTTCAAGATAACTGTCCCAA............................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................TCATCTTTCAAGATAACTGTCCCAA............................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................TAACTGTCCCAAATGAGCTATTCTC...............................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................TGAGCTATTCTCAACCATATGTTCT..................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................GGCCCGTGGGAATTAAACTTC..........................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................AATTAAACTTCCCACAAGTG-------------GCC.	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................TCAAGATAACTGTCCCAAATGAGC......................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................TATGCTAGGGACATCTCATC................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................GGACATCTCATCTTTCAAGATAACTGT.................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................TCCCAAATGAGCTATTCTCAACCATA........................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................ATTGTGAAAGAGTTTGAAGCTAAGATT...............................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................TTGTGAAAGAGTTTGAAGCTAAGA.................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TGGGAATTAAACTTCCCACAAGTG-------------GC..	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................AGCTATTCTCAACCATATGTTCT..................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................CCATATGTTCTGGTGATTTTTGGC.....................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................GATTGTGAAAGAGTTTGAAGCTAAG..................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................TCCCAAATGAGCTATTCTCAACCA..........................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................AAATGAGCTATTCTCAACCATAT.......................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................AAGATAACTGTCCCAAATGAGCTATT..................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................TCAACCATATGTTCTGGTGATTTTTGGCC....................................................................................................	29	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................TATGTTCTGGTGATTTTTGGCC....................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................CCATATGTTCTGGTGATTTTTGG......................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
............................................................................................TTCTTATGCTAGGGACATCTC...................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................TCCCAAATGAGCTATTCTCAACC...........................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................AAGATAACTGTCCCAAATGAGCTA....................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................TGTCCCAAATGAGCTATTCTCAACC...........................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................TAACTGTCCCAAATGAGCTATTCT................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................GGACATCTCATCTTTCAAGATAAC....................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................CATATGTTCTGGTGATTTTTGGCC....................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................GCTATTCTCAACCATATGTTCTG.................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................TCTTTCAAGATAACTGTCCCAAATG.........................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................AATTAAACTTCCCACAAGTG-------------GCCA	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................TCATCTTTCAAGATAACTG..................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................TGAGCTATTCTCAACCATATGTTCTG.................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................ATTAAACTTCCCACAAGTG-------------GCC.	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................TGATTGTGAAAGAGTTTGAAGCTAAGATT...............................................................	29	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0

dpe_670

scaffold_11:2382057-2382207 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-36.8	-36.7	-36.5