dpe_667

CDS [Dper\GL14222-cds]; exon [dper_GLEANR_14910:1]; CDS [Dper\GL14222-cds]; exon [dper_GLEANR_14910:2]; intron [Dper\GL14222-in]

--------------####################################-----------------------------------------------------------------------------################################################## TAGTCGGTCGCGCCATGCTGAGCTGTAGACACTTGATTGGTCGTTTTCTGGTGCGACGTCAGGCCAGCACGCAGGCTCGTCTTGCTAGTCCTAGCATTGTGGAGATCGACGAGGGCTGACGGGGCAGCGCCTGAAATACCCACAGGTCTGGTTGCGGGACAACTGCCAGTGCACGGA ************************************************.(((..((((((.((....((..(((((....(((((....))))).....))).))..)).)).))))))..))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M021 embryo	V042 embryo	M042 female body	V111 male body	V057 head
...............................................................................................ATTGTGGAGATCGACGAGGCT.............................................................	21	2	2	4.50	9	9	0	0	0	0
.....................................................................................................................................AAATACCCACAGGTCTGGTTGCGGGAC.................	27	0	1	3.00	3	3	0	0	0	0
..............ATGCTGAGCTGTAGACACT................................................................................................................................................	19	0	1	3.00	3	3	0	0	0	0
....................................................................................................................................GAAATACCCACAGGTCTG...........................	18	0	1	3.00	3	3	0	0	0	0
...............................................................................................ATTGTGGAGATCGACGAGGCC.............................................................	21	1	1	2.00	2	2	0	0	0	0
...................................................................................................................................TGAAATACCCACAGGTCTG...........................	19	0	1	2.00	2	2	0	0	0	0
........................GTAGACACTTGATTGGTC.......................................................................................................................................	18	0	1	2.00	2	2	0	0	0	0
..........................AGACACTTGATTGGTCGTTTTCTGGTGC...........................................................................................................................	28	0	1	2.00	2	2	0	0	0	0
.........................................CGTTTTCTGGTGCGACGTCAGGC.................................................................................................................	23	0	1	2.00	2	2	0	0	0	0
..............................ACTTGATTGGTCGTTTTCT................................................................................................................................	19	0	1	2.00	2	2	0	0	0	0
...............................................................................................ATTGTGGAGATCGACGAGGC..............................................................	20	1	1	2.00	2	1	1	0	0	0
..................................................................................................................................CTGAAATACCCACAGGTCTG...........................	20	0	1	2.00	2	2	0	0	0	0
..............ATGCTGAGCTGTAGACACTT...............................................................................................................................................	20	0	1	1.00	1	0	1	0	0	0
.............................................................................CGTCTTGCTAGTCCTAGCATTGTGGAG.........................................................................	27	0	1	1.00	1	0	1	0	0	0
.............................................................................................................................................................GACAACTGCCAGTGCACGGA	20	0	1	1.00	1	0	1	0	0	0
......................................................................................................................................AATACCCACAGGTCTGGTTGCG.....................	22	0	1	1.00	1	0	0	0	1	0
...............................................................CCAGCACGCAGGCTCGTCTTGCT...........................................................................................	23	0	1	1.00	1	0	1	0	0	0
...................................ATTGGTCGTTTTCTGGTGCGACGTCAGGC.................................................................................................................	29	0	1	1.00	1	1	0	0	0	0
......................................................................................AGTCCTAGCATTGTGGAGAT.......................................................................	20	0	1	1.00	1	0	0	1	0	0
...............................................................................................ATTGTGGAGATCGACGAGGCG.............................................................	21	2	1	1.00	1	1	0	0	0	0
.......................TGTAGACACTTGATTGGT........................................................................................................................................	18	0	1	1.00	1	1	0	0	0	0
...................................................................................................................................TGAAATACCCACAGGTCTGGTT........................	22	0	1	1.00	1	0	0	1	0	0
....................................................................................................................................GAAATACCCACAGGTCTGGTTGC......................	23	0	1	1.00	1	0	0	1	0	0
...............................................................................................ATTGTGGAGACCGACGAGG...............................................................	19	1	2	0.50	1	0	0	0	1	0
...........................................................................................................................................CCACAGGTCTGAGTGCGG....................	18	2	3	0.33	1	0	0	1	0	0
.........................................................................................................................................................GCGGGAAAACGGCCGGTGCAC...	21	3	4	0.25	1	0	0	0	0	1
......................................................................................................ATATGGACGAGGGTTGAC.........................................................	18	3	20	0.05	1	0	0	0	0	1
.................................................................................................................................................ATATGGTTGCGGGACGAC..............	18	3	20	0.05	1	0	1	0	0	0

ATCAGCCAGCGCGGTACGACTCGACATCTGTGAACTAACCAGCAAAAGACCACGCTGCAGTCCGGTCGTGCGTCCGAGCAGAACGATCAGGATCGTAACACCTCTAGCTGCTCCCGACTGCCCCGTCGCGGACTTTATGGGTGTCCAGACCAACGCCCTGTTGACGGTCACGTGCCT ************************************************.(((..((((((.((....((..(((((....(((((....))))).....))).))..)).)).))))))..))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V057 head	M042 female body
...............................................................................................................................GCGGACTTTATTGGTGTCC...............................	19	1	1	1.00	1	1	0
............................................................................................................................GTCGCGGATAGTATGGGTGTC................................	21	3	2	0.50	1	1	0
...........CGGTACGACTCTAGATCGGT..................................................................................................................................................	20	3	3	0.33	1	1	0
........................................................................................................................GCCCGTCGCTGACGTTATGG.....................................	20	3	17	0.06	1	0	1

Species	Coordinate	ID	Alignment
droPer2	scaffold_11:1813513-1813689 -	dpe_667	----------TA-----GTCGGTCGCGCCATGCTGAGCTGTAGA---CACTTGATTGGT---CGTTTTCTGGTG------C---GACGTCAGGCCAGCACG-----CAG--------------GCTCGTCTTGCTA---GTCCTAGCATTGTGGAGATCGACGAGGGCTGACG--G-GGC----A-GCGCCTGAAATACCCACAGGTCTGGTTGCGGGACAACTGCCAGTGCACGGA
dp5	XL_group1a:5227080-5227254 -		----------TA-----GTCGGTCGCGCCATGCTGAGCTGTAGA---CACTTGATTGGT---CGTTTTCTGGTG------C---GACGTCAGGCCAGCACG-----CAG--------------GCTCGTCTTGCTA---GTCCTGGCATTGTGGAGATCGACGAAGCT-GACG--G--GC----A-GCGCCTGAAATACCCACAGGTCTGGTTGCGGGACAACTGCCAGTGCACGGA
droWil2	scf2_1100000004590:1177099-1177282 +		----------CA-----GTCCATGACAGCATGCTGACTTGTAGA---CACTGGATTGGT---CAGCTACGCCGC------T---GGTCTAGCACTAGCTCA-----AGG--------------GCCCTTCTCACAG---ATCAGAATTATGTGGAATTGCGATTGGAT-GGTAAAGAAGTCGCTAAGCCATTAAAGTATCCAACTGTTTGGCTACGGGACAACTGTCAATGTCCAGA
droVir3	scaffold_12726:1693587-1693791 -		TCTCCGTTCACAGTTCAGTATTTGAACATATGCTGAGCTGTAAA---CACATGATTGGC---CAGCTGCTGGGCCGGCAGCTTAAGCGCCACGCCAGCC-ACGGC-ATT-----------ACGGCCAGACTGTTGG---AGCAGCGTTACGTGGAGCTAACTCAGCCA-GACG--G--AC----G-GCAACTCAAGTACCCGAGCATCTGGCTGCGTGACAATTGCCAGTGCTCGGA
droMoj3	scaffold_6473:6827821-6828007 +		----------TA-----GTATTTGTCAACATGCTGAGTTGCAAG---CATTTGATTGGT---CCGCTGCTAAATCGACAATTTCGGCGGCACGCCAGCGGC-----ATT-----------ACGGCCCAGCTGCTAG---AGCAGCGATACGTGGAGCTGGCGCAGCCA-GATG--G--AC----A-AAGGCTGAAGTACCCAAGCATTTGGCTGCGAGACAATTGTCAGTGCCCGGA
droGri2	scaffold_15203:7992815-7993003 -		----------C------------------ATGTTGAGTTGTAGA---CACATGATTGGC---CAGCTGCTCGCCCGGCAAATCCAGCGATACGCCAGCA-GCAGCAGCAGCCGGCGTATTACGGCTAGACTGCAGG---AGCAACGATATGTGGAAGTGACACGGCCT-GATG--G--AC----A-ACAACACAAGTATCCGAGCATTTGGCTGCGCGACAATTGTCAGTGTTCGGA
droAna3	scaffold_12929:712714-712893 +		-----------A-----GTTGAACCCGGAATGCTGAGCTGTAGA---TACCTAATTGGA---CGGTTGCTCCTT------G---GCCGGCCGGCGAGTACA-----GTG--------------GCCCGTTCCCTGG---CACCCGGCTACGTGGAGATTCGGGAGGCG-AATC--ACGGTAGCGA-GGTCCTCAAATACCCACAGATCTGGTTGAGGGACAACTGCCAGTGCCCCGA
droBip1	scf7180000394782:30610-30790 -		----------CA-----GTTGAACCCGGAATGCTGAGCTGTAGA---AACCTAATTGGA---CGGCTGCTCCTG------G---GCCGGCCGGCGAGCACA-----GTG--------------GCTCGTTCATTGG---CGCCCGGCTACGTGGAGATTCGCGAGGAG-AACG--GAGGTCCCCA-CGTCCTCAAGTATCCACAGATCTGGTTGCGGGACAACTGTCAGTGTCCCGA
droKik1	scf7180000301810:32095-32268 +		-----------A-----GTTGAACCCGAAATGCTGACTTGTAGA---CACCTCATTGGC---CACCT------C------C---GCCGGCAGGCCAGCACA--GCGGTA--------------GCTCGTGTCCTGG---CTCCCGGCTATGTGGAAGTCCAAGAAGAC-AAAG--G--CC--AGACCCCCCTCAAGTATCCACAAGTCTGGCTGAGGGACAACTGTCAGTGCCCGGA
droFic1	scf7180000454072:2189669-2189842 -		-----------A-----GTTGAACTCGGAATGCTGAGCTGTAGA---CAACTTATTTCC---CGGCTGGTATTC------C---TCCGGAAAGCGAGCACC-----TTA--------------GCTCGTATGACAG---CCTCTGGATGCGTGGAAGTCCAGGAGGGG-GCGA--A--CC----A-TCCATTGAAGTACCCACAAGTTTGGTTAAGAGAGAACTGTCAATGTAGCGA
droEle1	scf7180000491013:1534661-1534841 +		----------CA-----GTTGATGCCGGCATGCAGCGCTGTAGA---CAAGTGATTAAC---CGGCTGCTCCTGCGCCAGC---TCCGCCAGGCTAGCACA-----CTG--------------GCCCGTGTGAGTGGTTCACCCGGCTATGTGGAGATCAAGGA---G-CAGG--A--CT----C-CAGCCTAAAATACCCACCAGTTTGGCTGAGGGACAACTGCCAGTGTGTCGA
droRho1	scf7180000779976:294953-295134 -		TTGC------CA-----GTAGAAGCCGCAATGAAGAGCTGTAGA---CAACTGATTTCC---CGGCTGCTCCCC------C---TCAGGAAATCAAGCACA-----CTG--------------GCCCGTGTGAACGCATCCTCCGGCCATGTGGAAGTGCAGGAAGAG-CAGG--G--CA----G-TCCCCTAAAATACCCACAAGTTTGGCTGAGAGACAACTGTCAGTGTGCCGG
droBia1	scf7180000302069:630599-630773 +		----------CA-----GTCGAGCCCGGAATGCTGAGCTGTAGA---CAACAAATTTCC---CGGCTGCTGCTC------G---TGCGGAAAGCGAGCACA-----CAA--------------GCTCGCGTGCAGA---CCGCGGGCTATGTGGAAGTCCAGGAGGAG-CGGG--G--CA----G-TCTCCTGAAGTACCCACAAGTTTGGCTAAGAGACAACTGCCAGTGCGCCGA
droTak1	scf7180000415704:537243-537408 -		----------CA-----GTTGAGCCCGGAATGCTGAGCTGTAGAAAACAACTAATTTCA---AGGCTGCTC---------C---GCCGACAAGCGAGCACT-----TTG--------------GCTCGCGGA------------GGCTATGTGGAGGTCCAGGAGGAG-CAGG--G--CC----A-GCCCCTGAAATACCCACAAGTTTGGCTCAGGGACAACTGCCAGTGTGCCGA
droEug1	scf7180000409277:1194582-1194763 +		TCGG------CA-----GTTGAGCCCGGAATGCTGAGCTGTAGA---CAACTGATTTCTTCCCGGCTGTTCCAG------C---TCCGGAAAAAGAGCATA-----TTA--------------GCTCGTGTACGGG---CCTCCGATTATGTGGAAGTCCTGGAGGAG-CAGG--G--TG----A-TCTCTTGAAGTACCCACAAGTTTGGCTAAGGGATAATTGCCAATGTGCTGA
dm3	chrX:925543-925720 +		----------CA-----GTTGAGCCTGGAATGCTTAGCTGTAGG---CAACTTATTTCT---CGGCTGAGCCTT------C---TTCGGCAGGCGAGCACA-----TTT--------------GCTTGTGTGCGACTATGCCCCGACTATGTAGAAGTCCAGGAGGAG-CAGG--G--CA----A-TCTCCTGAAGTACCCCCAAGTTTGGCTTAGGGACAACTGTCAGTGTGCCGA
droSim2	x:828816-828990 +		----------CA-----GTTGAGCCTGGAATGCTGAGCTGTAGG---CAACTTATTTCT---CGGCTGGCCCTT------C---TTCGGCAGGCGAGCACA-----TTT--------------GCTTGTGTGCGAG---CTCCCGACTATGTGGAAGTCCAGGAGGAG-CAGG--G--CA----A-TCTCCTGAAGTACCCGCAAGTTTGGCTTAGGGACAACTGTCAATGTGCCGA
droSec2	scaffold_10:769106-769280 +		----------CA-----GTTGAGCCTGGAATGCTGAGCTGTAGG---CAACTTATTTCT---CGGCTGGCCCTT------C---TTCGGCAGGCGAGCACA-----TTT--------------GCTTGTGTGCGAG---CTCCCGACTATGTGGAAGTCCAGGAGGAG-CAGG--G--CA----A-TCTCCTGAAGTACCCGCAAGTTTGGCTTAGGGACAACTGTCAATGTGCCGA
droYak3	X:850337-850515 +		TCGG------CA-----GTTGAGCCCGGAATGCTGAGCTGTAGG---CAACTGATTTCT---CGACTGCTCCCT------C---TTCGGAGAACGAGCACA-----TTT--------------GGTCGTGTGCGAG---CCACCGACTATGTGGAAGTCCAGGAGGAG-CAGG--G--CA----A-TCTCCTGAAGTACCCACAAGCTTGGCTTAGGGACAACTGTCAGTGTGCCGA
droEre2	scaffold_4644:911231-911405 +		----------CA-----GTTGACCCCGGAATGCTGAGCTGTAGG---CAACTGATTTCT---CGGCTGCTCCCT------T---TTCGGAAAACAAGCACA-----TTT--------------GCTTGTGTGCGAG---CCGCCGACTATGTGGAAGTACAGGAGGAG-CAGG--G--CA----A-TGTCCTCAAGTACCCACAAGTTTGGCTAAGGGACAATTGTCAGTGTGCTGA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droPer2

----------TA-----GTCGGTCGCGCCATGCTGAGCTGTAGA---CACTTGATTGGT---CGTTTTCTGGTG------C---GACGTCAGGCCAGCACG-----CAG--------------GCTCGTCTTGCTA---GTCCTAGCATTGTGGAGATCGACGAGGGCTGACG--G-GGC----A-GCGCCTGAAATACCCACAGGTCTGGTTGCGGGACAACTGCCAGTGCACGGA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...................................................................................................................................................ATTGTGGAGATCGACGAGGCT.....................................................................	21	2	4.50	9	9	0	0	0	0	0
.................................................................................................................................................................................................AAATACCCACAGGTCTGGTTGCGGGAC.................	27	1	3.00	3	3	0	0	0	0	0
.............................ATGCTGAGCTGTAGA---CACT..........................................................................................................................................................................................	19	1	3.00	3	3	0	0	0	0	0
................................................................................................................................................................................................GAAATACCCACAGGTCTG...........................	18	1	3.00	3	3	0	0	0	0	0
...............................................................................................................................................................................................TGAAATACCCACAGGTCTG...........................	19	1	2.00	2	2	0	0	0	0	0
.......................................GTAGA---CACTTGATTGGT---C..............................................................................................................................................................................	18	1	2.00	2	2	0	0	0	0	0
.........................................AGA---CACTTGATTGGT---CGTTTTCTGGTG------C---.........................................................................................................................................................	28	1	2.00	2	2	0	0	0	0	0
..............................................................CGTTTTCTGGTG------C---GACGTCAGGC...............................................................................................................................................	23	1	2.00	2	2	0	0	0	0	0
................................................ACTTGATTGGT---CGTTTTCT.......................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0
...................................................................................................................................................ATTGTGGAGATCGACGAGGC......................................................................	20	1	2.00	2	1	0	1	0	0	0
..............................................................................................................................................................................................CTGAAATACCCACAGGTCTG...........................	20	1	2.00	2	2	0	0	0	0	0
.............................ATGCTGAGCTGTAGA---CACTT.........................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0
..............................................................................................................................CGTCTTGCTA---GTCCTAGCATTGTGGAG.................................................................................	27	1	1.00	1	0	0	1	0	0	0
.........................................................................................................................................................................................................................GACAACTGCCAGTGCACGGA	20	1	1.00	1	0	0	1	0	0	0
..................................................................................................................................................................................................AATACCCACAGGTCTGGTTGCG.....................	22	1	1.00	1	0	0	0	0	0	1
.............................................................................................CCAGCACG-----CAG--------------GCTCGTCTTGCT......................................................................................................	23	1	1.00	1	0	0	1	0	0	0
.....................................................ATTGGT---CGTTTTCTGGTG------C---GACGTCAGGC...............................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................A---GTCCTAGCATTGTGGAGAT...............................................................................	20	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................ATTGTGGAGATCGACGAGGCG.....................................................................	21	1	1.00	1	1	0	0	0	0	0
......................................TGTAGA---CACTTGATTGGT---...............................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................TGAAATACCCACAGGTCTGGTT........................	22	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................GAAATACCCACAGGTCTGGTTGC......................	23	1	1.00	1	0	1	0	0	0	0

dp5

----------TA-----GTCGGTCGCGCCATGCTGAGCTGTAGA---CACTTGATTGGT---CGTTTTCTGGTG------C---GACGTCAGGCCAGCACG-----CAG--------------GCTCGTCTTGCTA---GTCCTGGCATTGTGGAGATCGACGAAGCT-GACG--G--GC----A-GCGCCTGAAATACCCACAGGTCTGGTTGCGGGACAACTGCCAGTGCACGGA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
....................................................................................................................................................................................................................TGCGGGACAACTGCCAGTGCACGGA	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................GATCGACGAAGCT-GACG--G--GC----A-GCGCC..............................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................................ATTGTGGAGATCGACGAAGCT-GAC.................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................GTCGGTCGCGCCATGCTGAGCT......................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................CTGGTTGCGGGACAACTGCCAGTGCAC...	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................GCCAGCACG-----CAG--------------GCTCGT............................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................AAATACCCACAGGTCTGGTTGC......................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................CGTTTTCTGGTG------C---GACGTCAGGC...............................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................GTTTTCTGGTG------C---GACGTCA..................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................GTTTTCTGGTG------C---GACGTCAG.................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................................TGCGGGACAACTGCCAGTGCACGG.	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................GACGAAGCT-GACG--G--GC----A-GC.................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................GTCGCGCCATGCTGAGCTGTA...................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................GTGGAGATCGACGAAGCT-GACG--G--...........................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................GAGATCGACGAAGCT-GACG--G--GC----.....................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................GATCGACGAAGCT-GACG--G--GC----A-GCGCCT.............................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................GTTTTCTGGTG------C---GACGTCAGGCCAGC...........................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................GCACG-----CAG--------------GCTCGTCTTGCT......................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................ATTGTGGAGATCGACGAAGC......................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................TTGCGGGACAACTGCCAGT.......	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................ATTGGT---CGTTTTCTGGTG------C---GA.......................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................GGCATTGTGGAGATCGAC...........................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................AATACCCACAGGTCTGGTT........................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................G--------------GCTCGTCTTGCTA---GTCCTGGCAT........................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................ACAACTGCCAGTGCACGGA	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................ATCGACGAAGCT-GACG--G--GC----.....................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................TGCTA---GTCCTGGCATTGTGG...................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................ACTTGATTGGT---CGTTTTCTG......................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................TCTGGTG------C---GACGTCAGGCC..............................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................GGTCGCGCCATGCTGAGCT......................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................CATGCTGAGCTGTAGA---CACTTGATTGGT---...............................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................GACGAAGCT-GACG--G--GC----A-GCGCCTG............................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................TTGTGGAGATCGACGAAGCT-GACG--G--...........................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................GAGCTGTAGA---CACTTGATTGGT---...............................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................GATTGGT---CGTTTTCTGGTG------C---GA.......................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................AGCACG-----CAG--------------GCTCGTCTTGCT......................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................GCTGAGCTGTAGA---CACTTGATTGGT---C..............................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droWil2

----------CA-----GTCCATGACAGCATGCTGACTTGTAGA---CACTGGATTGGT---CAGCTACGCCGC------T---GGTCTAGCACTAGCTCA-----AGG--------------GCCCTTCTCACAG---ATCAGAATTATGTGGAATTGCGATTGGAT-GGTAAAGAAGTCGCTAAGCCATTAAAGTATCCAACTGTTTGGCTACGGGACAACTGTCAATGTCCAGA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
................................................................................................................................................................GATTGGAT-GGTAAAGAAGT.........................................................	19	1	5.00	5	0	0	2	3	0
.......................................GTAGA---CACTGGATTGGT---CAG............................................................................................................................................................................	20	1	4.00	4	2	1	0	1	0
.....................................................................................................................................................................GAT-GGTAAAGAAGTCGCTAAGCC................................................	23	1	3.00	3	0	0	3	0	0
................................................................................................................................................................GATTGGAT-GGTAAAGAAGTCGCT.....................................................	23	1	3.00	3	0	0	2	1	0
....................................................................................................................................................................GGAT-GGTAAAGAAGTCGCTAAGCC................................................	24	1	3.00	3	0	0	2	1	0
.......................GACAGCATGCTGACTTGTAGA---..............................................................................................................................................................................................	21	1	3.00	3	0	0	2	1	0
.......................GACAGCATGCTGACTTGT....................................................................................................................................................................................................	18	1	2.00	2	0	0	0	2	0
..................................GACTTGTAGA---CACTGGATTGGT---...............................................................................................................................................................................	22	1	2.00	2	0	1	0	1	0
....................................CTTGTAGA---CACTGGATTGGT---CA.............................................................................................................................................................................	22	1	2.00	2	0	0	0	2	0
......................................TGTAGA---CACTGGATTGGT---CAGC...........................................................................................................................................................................	22	1	2.00	2	0	0	0	2	0
.................................................................................................................................................................ATTGGAT-GGTAAAGAAGT.........................................................	18	1	2.00	2	0	0	0	2	0
......................................................................................................................................................................AT-GGTAAAGAAGTCGCTAAGC.................................................	21	1	2.00	2	0	0	0	2	0
.................................................................CTACGCCGC------T---GGTCTAGCACTA.............................................................................................................................................	22	1	2.00	2	0	0	0	2	0
................................................................................................GCTCA-----AGG--------------GCCCTTCTCACA......................................................................................................	20	1	2.00	2	0	1	0	1	0
....................................CTTGTAGA---CACTGGATTGGT---CAG............................................................................................................................................................................	23	1	2.00	2	1	0	0	1	0
....................................................................................................................................................ATGTGGAATTGCGATTGGAT-GGT.................................................................	23	1	2.00	2	0	0	0	2	0
.............................................................................................................................................................................................ATTAAAGTATCCAACTGTTTGGC.........................	23	1	2.00	2	0	1	0	1	0
................................................................................................................................................................GATTGGAT-GGTAAAGAAGTCGCTAA...................................................	25	1	1.00	1	0	0	1	0	0
.......................................GTAGA---CACTGGATTGGT---C..............................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
................................................................................................................................................AATTATGTGGAATTGCGATTGGAT-G...................................................................	25	1	1.00	1	0	0	0	1	0
.....................................................................................................................................................................GAT-GGTAAAGAAGTCGCTA....................................................	19	1	1.00	1	0	0	0	1	0
...........................................................................................................................................ATCAGAATTATGTGGAATTGCGAT..........................................................................	24	1	1.00	1	0	0	0	1	0
.........................................................................................................................................................................................................AACTGTTTGGCTACGGGACAACT.............	23	1	1.00	1	0	0	0	1	0
.........................................AGA---CACTGGATTGGT---CAGCT..........................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
...............................................................................................................................................GAATTATGTGGAATTGCGATTG........................................................................	22	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................ATTGGAT-GGTAAAGAAGTCGCTAAGC.................................................	26	1	1.00	1	0	0	0	1	0
...............................................CACTGGATTGGT---CAGCTACGCC.....................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................AAAGAAGTCGCTAAGCCATTAAAGT........................................	25	1	1.00	1	0	0	0	1	0
..........................................GA---CACTGGATTGGT---CAGCTACGCC.....................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................TGCGATTGGAT-GGTAAAGAAGTCGC......................................................	25	1	1.00	1	0	0	1	0	0
..........................AGCATGCTGACTTGTAGA---CACTGGATTG....................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0
.....................................................................................................................................................................GAT-GGTAAAGAAGTCGCTAAGC.................................................	22	1	1.00	1	0	0	0	1	0
..................................GACTTGTAGA---CACTGGATTGGT---CAG............................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
...........................................A---CACTGGATTGGT---CAGCTACGCCGC------T---.........................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
..................................................................................................................................................TTATGTGGAATTGCGATTGGAT-GGT.................................................................	25	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................................................GTTTGGCTACGGGACAACTGT...........	21	1	1.00	1	0	0	0	1	0
..................................GACTTGTAGA---CACTGGATTGGT---CAGC...........................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
...............................................................................................................................................................................................TAAAGTATCCAACTGTTTG...........................	19	1	1.00	1	0	0	0	1	0
................................................................................................................................................................GATTGGAT-GGTAAAGAAGTCGCTA....................................................	24	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................ATTGCGATTGGAT-GGTAAAGA............................................................	21	1	1.00	1	0	0	0	1	0
..................................GACTTGTAGA---CACTGGATTGGT---C..............................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
................................................................................................................................................................GATTGGAT-GGTAAAGAAGTCGCTAAGC.................................................	27	1	1.00	1	0	0	1	0	0
.................................................CTGGATTGGT---CAGCTACGCC.....................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
................................................................................................................................................AATTATGTGGAATTGCGATTG........................................................................	21	1	1.00	1	0	0	0	1	0
.....................................TTGTAGA---CACTGGATTGGT---...............................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
..................................................................................................................................................................TTGGAT-GGTAAAGAAGTCGCT.....................................................	21	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................GTAAAGAAGTCGCTAAGCCATTAAAGT........................................	27	1	1.00	1	0	0	1	0	0
.............................................................................................................................................................TGCGATTGGAT-GGTAAAGAAGTCG.......................................................	24	1	1.00	1	0	0	1	0	0
.................................................................................................................................................ATTATGTGGAATTGCGATTGGAT-....................................................................	23	1	1.00	1	0	0	0	1	0
.....................................TTGTAGA---CACTGGATTGGT---CAGC...........................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
.............................ATGCTGACTTGTAGA---CACTGGATT.....................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
...............................................CACTGGATTGGT---CAGCTACGCCGC------.............................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
.........................................AGA---CACTGGATTGGT---CAGCTACGC......................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0
...........................................................................................................................................................ATTGCGATTGGAT-GGTAAAGAAGT.........................................................	24	1	1.00	1	0	0	0	1	0
.................................................................CTACGCCGC------T---GGTCTAGCA................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
...............................................................................................................................................GAATTATGTGGAATTGCGATT.........................................................................	21	1	1.00	1	0	0	1	0	0
....................................................................................GGTCTAGCACTAGCTCA-----AGG--------------..................................................................................................................	20	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................ATTGGAT-GGTAAAGAAGTCGCTA....................................................	23	1	1.00	1	0	0	0	1	0
.........................................................................................AGCACTAGCTCA-----AGG--------------GCCCT.............................................................................................................	20	1	1.00	1	0	0	0	1	0
................................................................................................................................................................................................................TGGCTACGGGACAACTGT...........	18	1	1.00	1	0	0	0	1	0
..........................AGCATGCTGACTTGTAGA---CACTG.........................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................TGCGATTGGAT-GGTAAAGAAGT.........................................................	22	1	1.00	1	0	0	1	0	0
.................................................................CTACGCCGC------T---GGTCTAGCACTAG............................................................................................................................................	23	1	1.00	1	0	0	0	1	0
.....................................TTGTAGA---CACTGGATTGGT---CAG............................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
......................................................................................................................................................................AT-GGTAAAGAAGTCGCTAAGCC................................................	22	1	1.00	1	0	1	0	0	0
.................................................................................................CTCA-----AGG--------------GCCCTTCTCACAG---ATCAGA............................................................................................	26	1	1.00	1	0	0	0	1	0
.........................................AGA---CACTGGATTGGT---CAGC...........................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................ATTGCGATTGGAT-GGTAAAGAA...........................................................	22	1	1.00	1	0	0	1	0	0
..................................................................................................................................TCACAG---ATCAGAATTATGTGGAATTGC.............................................................................	27	1	1.00	1	0	0	0	1	0

droVir3

TCTCCGTTCACAGTTCAGTATTTGAACATATGCTGAGCTGTAAA---CACATGATTGGC---CAGCTGCTGGGCCGGCAGCTTAAGCGCCACGCCAGCC-ACGGC-ATT-----------ACGGCCAGACTGTTGG---AGCAGCGTTACGTGGAGCTAACTCAGCCA-GACG--G--AC----G-GCAACTCAAGTACCCGAGCATCTGGCTGCGTGACAATTGCCAGTGCTCGGA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
......................................................................................................GGC-ATT-----------ACGGCCAGACTGTTGG---AGC...............................................................................................	25	1	3.00	3	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................ATT-----------ACGGCCAGACTGTTGG---AGC...............................................................................................	22	1	2.00	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
........................................................................................................................................................GGAGCTAACTCAGCCA-GACG--G--AC----.....................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................AGCTTAAGCGCCACGCCAGC...........................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................AC----G-GCAACTCAAGTACCCGAGC................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................ATGATTGGC---CAGCTGCTGG.....................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................GCTGAGCTGTAAA---CACATGAT......................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................GGCCAGACTGTTGG---AGCAGCGTTACGTGGAGCTAACTC..........................................................................	38	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................GACTGTTGG---AGCAGCGTTACGTGGAGC................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................CATATGCTGAGCTGTAAA---..............................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................GAGCATCTGGCTGCGTGACAAT..............	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................GGC-ATT-----------ACGGCCAGACTGTTGG---AGCAGC............................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................G---AGCAGCGTTACGTGGAG.................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................GACAATTGCCAGTGCTCGGA	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................CTCAAGTACCCGAGCATCTGGCTGC......................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................CTGTTGG---AGCAGCGTTACGTGGAGC................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................ATT-----------ACGGCCAGACTGTTGG---AGCA..............................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................TGAACATATGCTGAGCTGT....................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................GG---AGCAGCGTTACGTGGAGCT...............................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................CAGACTGTTGG---AGCAGCGTTACGT.....................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...............................................................................GCTTAAGCGCCACGCCAGCC-ACGG.....................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................TGTTGG---AGCAGCGTTACGTGG...................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................................................................................................GGAGCTAACTCAGCCA-GACG--G--AC----G-GCA................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................CAGCCA-GACG--G--AC----G-GCAACTCAAGTACCCGAG.................................	32	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
........................................................................................................................................................................................G-GCAACTCAAGTACCCGAGCATCTGGC.........................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................CAAGTACCCGAGCATCTGGCTGCGTGA..................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................CAGCGTTACGTGGAGCTAACT...........................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................GTTGG---AGCAGCGTTACGTGG...................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................AGTACCCGAGCATCTGGCTGC......................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................GG---AGCAGCGTTACGTGGAGCTAACTC..........................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................AGTACCCGAGCATCTGGC.........................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................GGCTGCGTGACAATTGCCAGTG......	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

----------TA-----GTATTTGTCAACATGCTGAGTTGCAAG---CATTTGATTGGT---CCGCTGCTAAATCGACAATTTCGGCGGCACGCCAGCGGC-----ATT-----------ACGGCCCAGCTGCTAG---AGCAGCGATACGTGGAGCTGGCGCAGCCA-GATG--G--AC----A-AAGGCTGAAGTACCCAAGCATTTGGCTGCGAGACAATTGTCAGTGCCCGGA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...........................................................................................................................................................................................AGGCTGAAGTACCCAAGCATTTGGCT........................	26	1	1.00	1	1	0	0	0	0	0
........................................................................................GCACGCCAGCGGC-----ATT-----------ACG..................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................GGAGCTGGCGCAGCCA-GATG--G--A..........................................................	22	1	1.00	1	1	0	0	0	0	0
..........................................................................................................ATT-----------ACGGCCCAGCTGCTAG---AGCAGC............................................................................................	25	1	1.00	1	1	0	0	0	0	0
............................................................................ACAATTTCGGCGGCACGCCAGCGGC-----...................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0
................................................................................................................................................................................................GAAGTACCCAAGCATTTGGCTGCGAGA..................	27	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................ATTTGGCTGCGAGACAATTGTC..........	22	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................TACCCAAGCATTTGGCTGCGAG...................	22	1	1.00	1	1	0	0	0	0	0
........................................................................ATCGACAATTTCGGCGGCACGCC..............................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................ATG--G--AC----A-AAGGCTGAAGTACCCAAGC................................	26	1	1.00	1	1	0	0	0	0	0

droGri2

----------C------------------ATGTTGAGTTGTAGA---CACATGATTGGC---CAGCTGCTCGCCCGGCAAATCCAGCGATACGCCAGCA-GCAGCAGCAGCCGGCGTATTACGGCTAGACTGCAGG---AGCAACGATATGTGGAAGTGACACGGCCT-GATG--G--AC----A-ACAACACAAGTATCCGAGCATTTGGCTGCGCGACAATTGTCAGTGTTCGGA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
...........................................A---CACATGATTGGC---CAGCT..........................................................................................................................................................................	18	1	1.00	1	1	0
.............................................................................................................................................................................................ACACAAGTATCCGAGCATTTC...........................	21	1	1.00	1	1	0
....................................................................................................GCAGCAGCAGCCGGCGTA.......................................................................................................................	18	1	1.00	1	1	0
...................................................................................................................................................................................C----A-ACAACACAAGTATCCGA..................................	19	1	1.00	1	1	0
..................................................................................................................................................................................................AGTATCCGAGCATTTGGCTGCGCGACA................	27	1	1.00	1	1	0
...............................GTTGAGTTGTAGA---CACATG........................................................................................................................................................................................	19	1	1.00	1	1	0
................................................................................................................................................................CACGGCCT-GATG--G--AC----A-ACAACAC............................................	23	1	1.00	1	1	0
...............................................................................................................................................................................................................TTGGCTGCGCGACAATTGTCAGT.......	23	1	1.00	1	1	0
.....................................................................................................................................................TGTGGAAGTGACACGGCCT-GATG--..............................................................	23	1	1.00	1	0	1
....................................................................................AGCGATACGCCAGCA-GCAGCA...................................................................................................................................	21	1	1.00	1	0	1
.................................................................................................................GCGTATTACGGCTAGACTG.........................................................................................................	19	1	1.00	1	1	0
.........................................................GC---CAGCTGCTCGCCCGGCAAATCC.........................................................................................................................................................	24	1	1.00	1	1	0
..........C------------------ATGTTGAGTTGTAGA---CA............................................................................................................................................................................................	18	1	1.00	1	1	0
................................................................................................GCA-GCAGCAGCAGCCGGCG.........................................................................................................................	19	10	0.10	1	1	0

droAna3

-----------A-----GTTGAACCCGGAATGCTGAGCTGTAGA---TACCTAATTGGA---CGGTTGCTCCTT------G---GCCGGCCGGCGAGTACA-----GTG--------------GCCCGTTCCCTGG---CACCCGGCTACGTGGAGATTCGGGAGGCG-AATC--ACGGTAGCGA-GGTCCTCAAATACCCACAGATCTGGTTGAGGGACAACTGCCAGTGCCCCGA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
................................................................................................................................................................................................CAAATACCCACAGATCTGGTTGAGG....................	25	1	2.00	2	0	1	0	0	1	0
...........................GAATGCTGAGCTGTAGA---TACCTAATTGG...................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................GGTCCTCAAATACCCACAGATC.............................	22	1	1.00	1	0	1	0	0	0	0
..........................................GA---TACCTAATTGGA---CGGT...........................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0
.......................................GTAGA---TACCTAATTGGA---C..............................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
..................TTGAACCCGGAATGCTGAGCTG.....................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................AATACCCACAGATCTGGTTGAGGGAC.................	26	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................TACCCACAGATCTGGTTGAGG....................	21	1	1.00	1	1	0	0	0	0	0

droBip1

----------CA-----GTTGAACCCGGAATGCTGAGCTGTAGA---AACCTAATTGGA---CGGCTGCTCCTG------G---GCCGGCCGGCGAGCACA-----GTG--------------GCTCGTTCATTGG---CGCCCGGCTACGTGGAGATTCGCGAGGAG-AACG--GAGGTCCCCA-CGTCCTCAAGTATCCACAGATCTGGTTGCGGGACAACTGTCAGTGTCCCGA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

-----------A-----GTTGAACCCGAAATGCTGACTTGTAGA---CACCTCATTGGC---CACCT------C------C---GCCGGCAGGCCAGCACA--GCGGTA--------------GCTCGTGTCCTGG---CTCCCGGCTATGTGGAAGTCCAAGAAGAC-AAAG--G--CC--AGACCCCCCTCAAGTATCCACAAGTCTGGCTGAGGGACAACTGTCAGTGCCCGGA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

-----------A-----GTTGAACTCGGAATGCTGAGCTGTAGA---CAACTTATTTCC---CGGCTGGTATTC------C---TCCGGAAAGCGAGCACC-----TTA--------------GCTCGTATGACAG---CCTCTGGATGCGTGGAAGTCCAGGAGGGG-GCGA--A--CC----A-TCCATTGAAGTACCCACAAGTTTGGTTAAGAGAGAACTGTCAATGTAGCGA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

----------CA-----GTTGATGCCGGCATGCAGCGCTGTAGA---CAAGTGATTAAC---CGGCTGCTCCTGCGCCAGC---TCCGCCAGGCTAGCACA-----CTG--------------GCCCGTGTGAGTGGTTCACCCGGCTATGTGGAGATCAAGGA---G-CAGG--A--CT----C-CAGCCTAAAATACCCACCAGTTTGGCTGAGGGACAACTGCCAGTGTGTCGA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TTGC------CA-----GTAGAAGCCGCAATGAAGAGCTGTAGA---CAACTGATTTCC---CGGCTGCTCCCC------C---TCAGGAAATCAAGCACA-----CTG--------------GCCCGTGTGAACGCATCCTCCGGCCATGTGGAAGTGCAGGAAGAG-CAGG--G--CA----G-TCCCCTAAAATACCCACAAGTTTGGCTGAGAGACAACTGTCAGTGTGCCGG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

----------CA-----GTCGAGCCCGGAATGCTGAGCTGTAGA---CAACAAATTTCC---CGGCTGCTGCTC------G---TGCGGAAAGCGAGCACA-----CAA--------------GCTCGCGTGCAGA---CCGCGGGCTATGTGGAAGTCCAGGAGGAG-CGGG--G--CA----G-TCTCCTGAAGTACCCACAAGTTTGGCTAAGAGACAACTGCCAGTGCGCCGA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

----------CA-----GTTGAGCCCGGAATGCTGAGCTGTAGAAAACAACTAATTTCA---AGGCTGCTC---------C---GCCGACAAGCGAGCACT-----TTG--------------GCTCGCGGA------------GGCTATGTGGAGGTCCAGGAGGAG-CAGG--G--CC----A-GCCCCTGAAATACCCACAAGTTTGGCTCAGGGACAACTGCCAGTGTGCCGA	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TCGG------CA-----GTTGAGCCCGGAATGCTGAGCTGTAGA---CAACTGATTTCTTCCCGGCTGTTCCAG------C---TCCGGAAAAAGAGCATA-----TTA--------------GCTCGTGTACGGG---CCTCCGATTATGTGGAAGTCCTGGAGGAG-CAGG--G--TG----A-TCTCTTGAAGTACCCACAAGTTTGGCTAAGGGATAATTGCCAATGTGCTGA	Size	Hit Count	Total Norm	Total
No Reads

dm3

----------CA-----GTTGAGCCTGGAATGCTTAGCTGTAGG---CAACTTATTTCT---CGGCTGAGCCTT------C---TTCGGCAGGCGAGCACA-----TTT--------------GCTTGTGTGCGACTATGCCCCGACTATGTAGAAGTCCAGGAGGAG-CAGG--G--CA----A-TCTCCTGAAGTACCCCCAAGTTTGGCTTAGGGACAACTGTCAGTGTGCCGA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...........A-----GTTGAGCCTGGAATGCTTAG........................................................................................................................................................................................................	21	1	22.00	22	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	5	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................TGAGCCTGGAATGCTTAG........................................................................................................................................................................................................	18	1	12.00	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	6	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................AGCCTGGAATGCTTAGCTGTAGG---..............................................................................................................................................................................................	23	1	11.00	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	1	0	0	2	0	1	0	0	0	0	0	0
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..................TTGAGCCTGGAATGCTTAG........................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................TTGGCTTAGGGACAACTGTCA.........	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
...................TGAGCCTGGAATGCTTAGCTGTAGG---CAA...........................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................CCTGGAATGCTTAGCTGTAGG---CAAC..........................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................ACTTATTTCT---CGGCTGAGCCT....................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................TTCT---CGGCTGAGCCTT------C---TTCGGC...................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................TGTAGAAGTCCAGGAGGAG-CAGG--..............................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................TCT---CGGCTGAGCCTT------C---TTATC....................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................ATGTAGAAGTCCAGGAGGAA-TC..................................................................	22	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

----------CA-----GTTGAGCCTGGAATGCTGAGCTGTAGG---CAACTTATTTCT---CGGCTGGCCCTT------C---TTCGGCAGGCGAGCACA-----TTT--------------GCTTGTGTGCGAG---CTCCCGACTATGTGGAAGTCCAGGAGGAG-CAGG--G--CA----A-TCTCCTGAAGTACCCGCAAGTTTGGCTTAGGGACAACTGTCAATGTGCCGA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...............................................................................................................................................................................................TGAAGTACCCGCAAGTTTGGCTTAGGGA..................	28	1	4.00	4	0	0	0	0	0	0	0	0	3	0	1	0	0	0	0	0	0
.....................................................ATTTCT---CGGCTGGCCCTT------C---TTCGGCAG.................................................................................................................................................	27	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................CTGGAATGCTGAGCTGTAGG---C.............................................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................GAATGCTGAGCTGTAGG---C.............................................................................................................................................................................................	18	1	2.00	2	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................TGAGCTGTAGG---CAACTTATTTCT---CGGC...........................................................................................................................................................................	27	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................CTTATTTCT---CGGCTGGCC......................................................................................................................................................................	18	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................TATTTCT---CGGCTGGCCCTT------C---T........................................................................................................................................................	21	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................TGCGAG---CTCCCGACTATGTGGAAGTCCA............................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................TTAGGGACAACTGTCAAT.......	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................GCCTGGAATGCTGAGCTGTAGG---CAACTT........................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................TATGTGGAAGTCCAGGAGGAG-C...................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..................TTGAGCCTGGAATGCTGA.........................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................TGTAGG---CAACTTATTTCT---CGGCT..........................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................GCTGAGCTGTAGG---CAACT.........................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................GTGTGCGAG---CTCCCGACTATGTGGAAGT...............................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................CTTATTTCT---CGGCTGGCCC.....................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................TATTTCT---CGGCTGGCCCTT------C---TTCGGCA..................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................CGCAAGTTTGGCTTAGGGA..................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
........................CTGGAATGCTGAGCTGTAGG---CAAC..........................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................CGCAAGTTTGGCTTAGGGAC.................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................GTAGG---CAACTTATTTCT---CGGCTGGCC......................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................GG---CAACTTATTTCT---CGGC...........................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................T------C---TTCGGCAGGCGAGCACA-----TTT--------------GCT...............................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................CTGAAGTACCCGCAAGTTTGG..........................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................GCGAG---CTCCCGACTATGTGGAAGTC..............................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................AGTACCCGCAAGTTTGGCTTAG.....................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................GAATGCTGAGCTGTAGG---CA............................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................CA-----TTT--------------GCTTGTGTGCGAG---CTCCC.............................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........A-----GTTGAGCCTGGAATGCTGAGCTGTAG..................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................GCTTGTGTGCGAG---CTCCCGAC..........................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................CTGGCCCTT------C---TTCGGCAGGCGA.............................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...................TGAGCCTGGAATGCTGAG........................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.....................AGCCTGGAATGCTGAGCTGTAGG---CAACT.........................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
............................AATGCTGAGCTGTAGG---CAACT.........................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................GTTTGGCTTAGGGACAACT.............	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

----------CA-----GTTGAGCCTGGAATGCTGAGCTGTAGG---CAACTTATTTCT---CGGCTGGCCCTT------C---TTCGGCAGGCGAGCACA-----TTT--------------GCTTGTGTGCGAG---CTCCCGACTATGTGGAAGTCCAGGAGGAG-CAGG--G--CA----A-TCTCCTGAAGTACCCGCAAGTTTGGCTTAGGGACAACTGTCAATGTGCCGA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
......................GCCTGGAATGCTGAGCTG.....................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0

droYak3

TCGG------CA-----GTTGAGCCCGGAATGCTGAGCTGTAGG---CAACTGATTTCT---CGACTGCTCCCT------C---TTCGGAGAACGAGCACA-----TTT--------------GGTCGTGTGCGAG---CCACCGACTATGTGGAAGTCCAGGAGGAG-CAGG--G--CA----A-TCTCCTGAAGTACCCACAAGCTTGGCTTAGGGACAACTGTCAGTGTGCCGA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..........................................................................................................TTT--------------GGTCGTGTGCGAG---CCACCGA...........................................................................................	23	1	3.00	3	0	1	0	1	0	0	1	0	0	0	0
....................................................................................................A-----TTT--------------GGTCGTGTGCGAG---CCACCGA...........................................................................................	24	1	3.00	3	0	0	0	0	0	0	3	0	0	0	0
.....................................................................................................................................................TGTGGAAGTCCAGGAGGAG-CAGG--G--C..........................................................	25	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
...................................................................................................CA-----TTT--------------GGTCGTGTGCGAG---CCACCGACTA........................................................................................	28	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
..........................................GG---CAACTGATTTCT---CGACTGCT.......................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
................................................................................................GCACA-----TTT--------------GGTCGTGTGCGA......................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................TTGAGCCCGGAATGCTGAGCTGTAGG---C.............................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................CGGAATGCTGAGCTGTAGG---C.............................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................ACAAGCTTGGCTTAGGGACA................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................CA-----TTT--------------GGTCGTGTGCGAG---CCACCGA...........................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................TTAGGGACAACTGTCAGTGTGCC..	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................CAACTGATTTCT---CGACTGCTCCCT------.............................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................GTACCCACAAGCTTGGCTTAGGGA..................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................CACAAGCTTGGCTTAGGGACAACTGTC..........	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................AGTACCCACAAGCTTGGCTT.......................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................TGAGCCCGGAATGCTGAGCTGTA...................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.....................................................................TCCCT------C---TTCGGAGAACGAGCACA-----TTT--------------GGT...............................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................CTTGGCTTAGGGACAACTGTCAGTGTGC...	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................A----A-TCTCCTGAAGTACCCACAAGCTTGGCT........................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................TCTCCTGAAGTACCCACAAG...............................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................CTATGTGGAAGTCCAGGAGGAG-CAGG--G--C..........................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................GGACAACTGTCAGTGTGC...	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................GTGGAAGTCCAGGAGGAG-C...................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................A----A-TCTCCTGAAGTACCCACA.................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................GCTGAGCTGTAGG---CAACTGATTTC...................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
....................................................GATTTCT---CGACTGCTCCCT------C---T........................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.............................ATGCTGAGCTGTAGG---CAACTGATTTCT---C..............................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................GGAAGTCCAGGAGGAG-CAGG--..............................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................CGTGTGCGAG---CCACCGACTATG......................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................GCTTAGGGACAACTGTCAGTGTGC...	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................TGAGCCCGGAATGCTGAGCT......................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
....................................................................................................................................................................................................................TTAGGGACAACTGTCAGTGTGC...	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................CGACTGCTCCCT------C---TTCGGAGAACGAGC...........................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................GCTTAGGGACAACTGTCAGTGTGCC..	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................GCTGAGCTGTAGG---CAACTGATT.....................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

----------CA-----GTTGACCCCGGAATGCTGAGCTGTAGG---CAACTGATTTCT---CGGCTGCTCCCT------T---TTCGGAAAACAAGCACA-----TTT--------------GCTTGTGTGCGAG---CCGCCGACTATGTGGAAGTACAGGAGGAG-CAGG--G--CA----A-TGTCCTCAAGTACCCACAAGTTTGGCTAAGGGACAATTGTCAGTGTGCTGA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.......................................................................................GGAAAACAAGCACA-----TTT--------------GCT...............................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
................................................................................................................................................................................................CAAGTACCCACAAGTTTGGCT........................	21	1	1.00	1	0	0	0	0	1	0	0
..............................TGCTGAGCTGTAGG---CAACTGATT.....................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0
...........................................................................................................................................................AGTACAGGAGGAG-CAGG--G--CA----A-TGTC...............................................	25	1	1.00	1	0	0	0	0	1	0	0
.....................................................................TCCCT------T---TTCGGAAAACAAGCACA-----TT.................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0

dpe_667

scaffold_11:1813563-1813639 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads