ID:

dpe_666

 Coordinate:

scaffold_11:1624580-1624730 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-4.1 -3.8

Flybase annnotation

exon [dper_GLEANR_14917:3]; CDS [Dper\GL14229-cds]; intron [Dper\GL14229-in]; Antisense to intron [Dper\GL14398-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##########----------------------------------------
TACAAGTAAATCTTTTATAGTATTTCGGCGAACTTCAACGTCAGCCCCTCCTTAGTGGTTATATTTTGTATTTTTTTTTATTTCTTTCTGTTTGGTCAGTCAGCGATTGCGATAACGATAGCGATAACGGGTGGCCGGATAATGGTTCCCATGCATATGTGCTACCACTTTATTATGTATTACTTTTTTTTTCTACCGTAGTGAGTATTGAGAGTATTGGTACCATATAATTTAATGTCTCTTAAGGAATT
*********************************************************************..............((.((.(((....(((((...)))))....))))).)).********************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M021
embryo
 M042
female body
 V042
embryo
 V111
male body
......................................................................................................GCGATTGCGATAACGATAGC................................................................................................................................. 20 0 1 5.00 5 4 1 0 0
........AATCTTTTATAGTATTTCGGC.............................................................................................................................................................................................................................. 21 0 1 4.00 4 4 0 0 0
...................................................................................CTTTCTGTTTGGTCAGTCAGCGATTGC............................................................................................................................................. 27 0 1 4.00 4 3 1 0 0
.....................................................................ATTTTTTTTTATTTCTTTCTGTTTGGTC.......................................................................................................................................................... 28 0 1 3.00 3 3 0 0 0
..............TTATAGTATTTCGGCGAACTTCAACGTC................................................................................................................................................................................................................. 28 0 1 3.00 3 3 0 0 0
.....................ATTTCGGCGAACTTCAAC.................................................................................................................................................................................................................... 18 0 1 3.00 3 3 0 0 0
............................................................................TTTATTTCTTTCTGTTTGGTC.......................................................................................................................................................... 21 0 1 3.00 3 3 0 0 0
.................................TTCAACGTCAGCCCCTCCTTAGTG.................................................................................................................................................................................................. 24 0 1 3.00 3 3 0 0 0
............................................................................................................................................................................................................GTATTGAGAGTATTGGTA............................. 18 0 1 2.00 2 2 0 0 0
.....................................................................................TTCTGTTTGGTCAGTCAGCGATTGC............................................................................................................................................. 25 0 1 2.00 2 2 0 0 0
.........................................................................................GTTTGGTCAGTCAGCGATT............................................................................................................................................... 19 0 1 2.00 2 2 0 0 0
.....................................................................................................AGCGATTGCGATAACGATAGC................................................................................................................................. 21 0 1 2.00 2 0 2 0 0
.....................ATTTCGGCGAACTTCAACGTCAGCCCC........................................................................................................................................................................................................... 27 0 1 2.00 2 2 0 0 0
................................................................................................................................................................................GTATTACTTTTTTTTTCTACCGTAGT................................................. 26 0 1 2.00 2 2 0 0 0
.....................................................................................TTCTGTTTGGTCAGTCAGC................................................................................................................................................... 19 0 1 2.00 2 0 1 1 0
.................................................................................................................AACGATAGCGATAACGGGT....................................................................................................................... 19 0 1 2.00 2 0 2 0 0
.....................ATTTCGGCGAACTTCAACGTC................................................................................................................................................................................................................. 21 0 1 2.00 2 2 0 0 0
.........ATCTTTTATAGTATTTCGGC.............................................................................................................................................................................................................................. 20 0 1 2.00 2 2 0 0 0
.............................................................................TTATTTCTTTCTGTTTGGTC.......................................................................................................................................................... 20 0 1 2.00 2 2 0 0 0
........................................................................................................................GCGATAACGGGTGGCCGGATAATGG.......................................................................................................... 25 0 1 2.00 2 0 1 0 1
........................................................................................................................GCGATAACGGGTGGCCGGAT............................................................................................................... 20 0 1 2.00 2 2 0 0 0
.....................ATTTCGGCGAACTTCAACGT.................................................................................................................................................................................................................. 20 0 1 2.00 2 2 0 0 0
................................................................................................................................................................................................CTACCGTAGTGAGTATTGAGA...................................... 21 0 1 2.00 2 0 0 1 1
................................................................................................................................................................................GTATTACTTTTTTTTTCTACC...................................................... 21 0 1 2.00 2 2 0 0 0
...........CTTTTATAGTATTTCGGC.............................................................................................................................................................................................................................. 18 0 1 2.00 2 2 0 0 0
........................TCCGCCAACTTCAACCTCAGC.............................................................................................................................................................................................................. 21 3 10 1.30 13 0 13 0 0
...........................................................................................................................ATAACGGGTGGCCGGATAATGGT......................................................................................................... 23 0 1 1.00 1 0 0 1 0
...............................................................................................................ATAACGATAGCGATAACGGGT....................................................................................................................... 21 0 1 1.00 1 0 1 0 0
.............................................................................TTATTTCTTTCTGTTTGGT........................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0
.............................................................................TTATTTCTTTCTGTTTGGTCAGTC...................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0
..........................................................................................................................................................................................................GAGTATTGAGAGTATTGGT.............................. 19 0 1 1.00 1 0 0 0 1
...............................................................................ATTTCTTTCTGTTTGGTCAGT....................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0
..........................................................................................................................GATAACGGATGGCCGGATAAT............................................................................................................ 21 1 1 1.00 1 0 1 0 0
...............................................................................................................ATAACGATAGCGATAACGGGTGGCCGGAT............................................................................................................... 29 0 1 1.00 1 1 0 0 0
.............................................................................TTATTTCTTTCTGTTTGGTCA......................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0
.....................................................................................................................................................................................................................................ATTTAATGTCTCTTAAGGA... 19 0 1 1.00 1 0 0 1 0
....................................................................................TTTCTGTTTGGTCAGTCAGCGATTG.............................................................................................................................................. 25 0 1 1.00 1 0 0 0 1
...........CTTTTATAGTATTTCGGCGAACTTCAA..................................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0
........AATCTTTTATAGTATTTCGGCGAAC.......................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0
.........ATCTTTTATAGTATTTCGGCGAAC.......................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0
..................................................................................................................................................................................ATTACTTTTTTTTTCTACCGTAGTG................................................ 25 0 1 1.00 1 0 1 0 0
.................................TTCAACGTCAGCCCCTCCTTAGT................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0
.......................................................................................................CGATTGCGATAACGATAGC................................................................................................................................. 19 0 1 1.00 1 0 0 1 0
..................................................................................................................................................................................................................AGAGTATTGGTACCATATA...................... 19 0 1 1.00 1 0 0 1 0
.........................................................................................GTTTGGTCAGTCAGCGATTGCG............................................................................................................................................ 22 0 1 1.00 1 0 0 0 1
..................................................................................................................................................................................................................................ATAATTTAATGTCTCTTAAGGA... 22 0 1 1.00 1 0 1 0 0
........................................................................TTTTTTTATTTCTTTCTGTTTGGTC.......................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0
.........................................................................................GTTTGGTCAGTCAGCGATTGCGATA......................................................................................................................................... 25 0 1 1.00 1 1 0 0 0
........................................................................................GGTTTGGTCAGTGAGCGATTGCG............................................................................................................................................ 23 2 1 1.00 1 0 0 1 0
..............................................................................................................GATAACGATAGCGATAACGG......................................................................................................................... 20 0 1 1.00 1 0 0 0 1
..........................................................................................................................GATAACGGGTGGCCGGATAATGGT......................................................................................................... 24 0 1 1.00 1 0 0 0 1
...................................CAACGTCAGCCCCTCCTTAGT................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0
...................................................................................CTTTCTGTTTGGTCAGTC...................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0
.......................................................................................................................................CGGATAATGGTTCCCATGC................................................................................................. 19 0 1 1.00 1 0 1 0 0
........................................................................................TGTTTGGTCAGTCAGCGATTGCG............................................................................................................................................ 23 0 1 1.00 1 0 0 1 0
.....................ATTTCGGCGAACTTCAACGTCAGCCCCT.......................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0
........................................................................................................GATTGCGATAACGATAGC................................................................................................................................. 18 0 1 1.00 1 1 0 0 0
..............................................................................................................................................................................................................ATTGAGAGTATTGGTACCAT......................... 20 0 1 1.00 1 0 1 0 0
...............................................................................ATTTCTTTCTGTTTGGTC.......................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0
.......................................................................................................................AGCGATAACGGGTGGCCGGATAAT............................................................................................................ 24 0 1 1.00 1 0 0 0 1
....................................................................TATTTTTTTTTATTTCTTTCTGTTTGGTC.......................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0
..............................................................................................................................................................................................................ATTGAGAGTATTGGTACC........................... 18 0 1 1.00 1 0 0 1 0
..................................................................................................................................................................................ATTACTTTTTTTTTCTACCGT.................................................... 21 0 1 1.00 1 1 0 0 0
....................................................................................................................GATAGCGATAACGGGTGGCCGGATAAT............................................................................................................ 27 0 1 1.00 1 0 0 0 1
..........TCTTTTATAGTATTTCGGCGA............................................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0
.............................................................................................................CGATAACGATAGCGATAAC........................................................................................................................... 19 0 1 1.00 1 0 1 0 0
.................................................................................TTCTTTCTGTTTGGTCAGTCAGC................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0
.....................ATTTCGGCGAACTTCAACGTCAGCCC............................................................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0
......................................................................................................................................................................................................................................TTTAATGTCTCTTAAGGA... 18 0 1 1.00 1 0 1 0 0
........................................................................TTTTTTTATTTCTTTCTCTTTGGTC.......................................................................................................................................................... 25 1 1 1.00 1 1 0 0 0
...........CTTTTATAGTATTTCGGCGAAC.......................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0
....................................................................GTATTTTTTTTATTTCTTTCTGTTTGGTC.......................................................................................................................................................... 29 3 1 1.00 1 1 0 0 0
................................................................................................CAGTCAGCGATTGCGATAACGAT.................................................................................................................................... 23 0 1 1.00 1 0 0 1 0
........................................................................................................GATTGCGATAACGATAGCGAT.............................................................................................................................. 21 0 1 1.00 1 0 0 0 1
................................CTTCAACGTCAGCCCCTCCTTAGTG.................................................................................................................................................................................................. 25 0 1 1.00 1 0 1 0 0
..............................................................................................................GATAACGATAGCGATAACG.......................................................................................................................... 19 0 2 1.00 2 0 0 0 2
.............................GAACTTCAACGTCAGCCCCTCC........................................................................................................................................................................................................ 22 0 1 1.00 1 0 1 0 0
....................................................................................................CAGCGATTGCGATAACGATAGC................................................................................................................................. 22 0 1 1.00 1 0 0 1 0
................................................................................................CAGTCAGCGATTGCGATAACGATAGC................................................................................................................................. 26 0 1 1.00 1 0 0 1 0
..............................................................................................................GATAACGATAGCGATAACGGGT....................................................................................................................... 22 0 1 1.00 1 0 0 0 1
...........CTTTTATAGTATTTCGGCG............................................................................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0
..........................................................................TTTTTATTTCTTTCTGTTTGGTC.......................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0
...........................................................................TTTTATTTCTTTCTGTTTGGTC.......................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0
........................TCCGCCAACTTCAACCTCAG............................................................................................................................................................................................................... 20 3 16 0.50 8 0 8 0 0
...............................................................................................................ATAACGATAGCGATAACG.......................................................................................................................... 18 0 2 0.50 1 1 0 0 0
..............................AACTTCAACCTCAGCTCCTC......................................................................................................................................................................................................... 20 2 3 0.33 1 0 1 0 0
........................TCCGCCAACTTCAACCTCAGCC............................................................................................................................................................................................................. 22 3 4 0.25 1 0 1 0 0
...........CTTTTATAGTATTTCGAC.............................................................................................................................................................................................................................. 18 1 7 0.14 1 1 0 0 0
...................................................................................................................................................................................................................................CAATTTAAGGTCTCTTAAGG.... 20 2 7 0.14 1 0 1 0 0
..............................AACTTCAACCTCAGCTCCT.......................................................................................................................................................................................................... 19 2 8 0.13 1 0 1 0 0
...............................ACTTCAACCTCAGCTCCT.......................................................................................................................................................................................................... 18 2 13 0.08 1 0 1 0 0

Anti-sense strand reads

ATGTTCATTTAGAAAATATCATAAAGCCGCTTGAAGTTGCAGTCGGGGAGGAATCACCAATATAAAACATAAAAAAAAATAAAGAAAGACAAACCAGTCAGTCGCTAACGCTATTGCTATCGCTATTGCCCACCGGCCTATTACCAAGGGTACGTATACACGATGGTGAAATAATACATAATGAAAAAAAAAGATGGCATCACTCATAACTCTCATAACCATGGTATATTAAATTACAGAGAATTCCTTAA
*********************************************************************************************************************************..............((.((.(((....(((((...)))))....))))).)).********************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 V111
male body		 V057
head
 V050
head
 M021
embryo
........................AGGCGGTTGAAGTTGGAGTCG.............................................................................................................................................................................................................. 21 3 10 36.10 361 202 139 16 4 0
...........................CGGTTGAAGTTGGAGTCGAGGA.......................................................................................................................................................................................................... 22 3 9 8.67 78 18 58 2 0 0
...............................TGAAGTTGGAGTCGAGGA.......................................................................................................................................................................................................... 18 2 13 8.23 107 46 59 1 1 0
.......................AAGGCGGTTGAAGTTGGAGTCG.............................................................................................................................................................................................................. 22 3 3 7.67 23 11 12 0 0 0
..............................TTGAAGTTGGAGTCGAGGA.......................................................................................................................................................................................................... 19 2 8 5.75 46 24 20 0 2 0
........................AGGCGGTTGAAGTTGGAGTC............................................................................................................................................................................................................... 20 3 16 3.44 55 34 16 2 0 3
..............................TTGAAGTTGGAGTCGGGGA.......................................................................................................................................................................................................... 19 1 1 1.00 1 0 1 0 0 0
...........................CGGTTGAAGTTGCAGTCGAGG........................................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0
...........................CGCTTGAAGTTGGAGTCGAGGA.......................................................................................................................................................................................................... 22 2 1 1.00 1 1 0 0 0 0
............................GCTTGAAGTTGGAGTCGAGGA.......................................................................................................................................................................................................... 21 2 1 1.00 1 0 1 0 0 0
.......................GAGGCGCTTGAAGTTGGAGTC............................................................................................................................................................................................................... 21 3 1 1.00 1 1 0 0 0 0
........................AGGCGGTTGAAGTTGCAGTCGAGG........................................................................................................................................................................................................... 24 3 2 0.50 1 1 0 0 0 0
...........................CGATTGAAGTTGGAGTCGAGGA.......................................................................................................................................................................................................... 22 3 2 0.50 1 0 1 0 0 0
............................GCTTGAAGTTGGAGTCGAGGAA......................................................................................................................................................................................................... 22 3 2 0.50 1 0 0 1 0 0
..........................GCGCTTGAAGTTGGAGTCGAG............................................................................................................................................................................................................ 21 3 5 0.40 2 1 0 1 0 0
........................AGGCGATTGAAGTTGGAGTC............................................................................................................................................................................................................... 20 3 3 0.33 1 0 1 0 0 0
.......................AAGGCGGTTGAAGTTGGAGTC............................................................................................................................................................................................................... 21 3 4 0.25 1 1 0 0 0 0
........................AGGCGGTTGAAGTTGGAGTCGG............................................................................................................................................................................................................. 22 3 4 0.25 1 1 0 0 0 0
.............................................................................................................................................................ACGCGATGGTGAACCAATAC.......................................................................... 20 3 5 0.20 1 0 0 1 0 0
...........................CGGTTGAAGTTGGAGTCGGGG........................................................................................................................................................................................................... 21 2 5 0.20 1 0 0 0 1 0
............................GTTTGAAGTTGGAGTCGAGGA.......................................................................................................................................................................................................... 21 3 6 0.17 1 1 0 0 0 0
..............................TTGAAGTTGGAGTCGGGGAAC........................................................................................................................................................................................................ 21 3 7 0.14 1 1 0 0 0 0
............................GGTTGAAGTTGCAGTCGAGG........................................................................................................................................................................................................... 20 2 8 0.13 1 1 0 0 0 0
.....................................TGCAGTAGGGGTGGAATGA................................................................................................................................................................................................... 19 3 11 0.09 1 0 1 0 0 0
................................GAAGTTGGAGTCGGGGAA......................................................................................................................................................................................................... 18 2 11 0.09 1 1 0 0 0 0
..........................GCGCTTGAAGTTGGAGTCGA............................................................................................................................................................................................................. 20 3 13 0.08 1 0 0 1 0 0
.......................AAGGCGGTTGAAGTTGGAGT................................................................................................................................................................................................................ 20 3 14 0.07 1 1 0 0 0 0
..............................TTGAAGTTGGAGTCGAGGAAG........................................................................................................................................................................................................ 21 3 18 0.06 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_11:1624530-1624780 - dpe_666 TACAAGTAAATCTTTTATAGTATTTCGGCGAACTTCAACGTCAGCCCCTCCTTAGTGGTTATATTTTGTATT-------------------------------------------------------------------------------------------TTTTTT--TATTTCTTTCTGTTTGGTCAGTCAGCGATTGCGATAACGATAGCGATAACGGGTGGCCGGATAATGGTTCCCATGCATATGTGCTACCACTTTATTATGTATTACTTTTTT----------TT--TCTA-CCG-------TAGTGAGTATTGA-------------GAGTATTGGT---------------------------------------------------------------------ACCATATAATTTAATGTCTCTT-AAGGAATT--
dp5 XL_group1a:5036668-5036917 - TA-AAG-AAATCTTTTATAGTATTTCGGCGAACTTCAACGTCAGCCCCTCCTTAGTGGTTATATTTTGTATT-------------------------------------------------------------------------------------------TTTTTT--TATTTCTTTCTGTTTGGTCAGTCAGCGATTGCGATAACGATAGCGATAACGGGTGGCCGGATAATGGTTCCCATGCATATGTGCTACCACCTTATTATGTATTACTTTTTT---------TTT--TCTA-CCG-------TAGTGAGTATTGA-------------GAGTATTGGT---------------------------------------------------------------------ACCATATAATTTAATGTCTCTT-AAGGAATT--
droVir3 scaffold_12325:32399-32459 + CA---------------------T---------------------------T---------TTTTTTTTTGT-------------------------------------------------------------------------------------------TTTTTT--TTTTTCTCCCT---------------A----------------------------------------------------------------------------------------------TC-TG-CA---A-------TAATGA-----G---------------AGTAGTGAT---------------------------------------------------------------------ACCAT----------------------------
droGri2 scaffold_15203:7772298-7772506 - TA-AA-----ATGTTTATAGTATTTCT------------------TACTGAT---------TATTGATTAAAT------TTTT--------------------------------------------------------------------------------TTTTTT--TGTGTTTTTTTTTTTTGTTAGTTTCGG----------------------------------------------------------------------------------------------TT-TG-CGAG-AATGAAAGTAGT-GGCAACG---------------TTTTCATGTATTGTTAAAGTATTTGTATTCATGTGTATGTTGTTGCCTTATTTTTTTTTATACTTATGTGCGGTGAGT----TGTAATTTAATGACTACTTTATTTATA--
droAna3 scaffold_12929:880097-880296 + CT---------------------C--------------------------TTTAGTTCTTTTAGAATTTAGT-TTC--TTTTTTTTCCAAGTGTTTGACCATCGAAATAGCCCCCGATAGCGATAACGAAAGCTTATATATTACCTATACCTTATAAGCTA---------------------------------------------------------------------------------------------------------------TTTTTTTTTTGTTCTTTATTTT--TTTT-ATG-------TTCTTTTTTTTCGGTCTATTGG-----TACAT-AGA---------------------------------------------------------------------TCCATATAACTTAATGTCTCCC-AGCGAATT--
droBip1 scf7180000395960:48545-48751 + AC---------------------TGCGGCAAACT----CGTTAGTTCTT--TTAGAATTTATATTCTTTTGT-TTTTTTTTTTCTTCCAAGTGTTTGACCATCGAAATAGCCCCCGATAGCGATAACGAAAGCTTATATATTACCTCTACTTTATAAGCTACTTTTTTT--------------------------------------------------------------------------------------------------------------TGT---------TTTT-TTCT---------------------TCGGTCTATTGGCTACATACATAGA----------------------------------------------------------------------TCCATATAATTTAATGTCTCAT-AGGGAATT--
droKik1 scf7180000301810:222525-222628 + TG---------------------T---------------------------A---------TATTACCTATT-------------------------------------------------------------------------------------------ATTTCGGTTTCT--TTTT--------------------------------------------------------------------------------------------------TTT---------TTGT-TTAG-CAG-------TAGTGGGCACCGA---------TCGCAAGTATCGGT---------------------------------------------------------------------GCCATATAATTTAACGTCTCGC-AAGGAATTGA
droFic1 scf7180000454072:2053864-2053937 - TT---------------------T--------------------------------------------------------------------------------------------------------------------------------------------TTTTT--TGTTGCTATCT-------------------------------------------------------------------------------------------TAGTT----------------------------------TTTTGATAGCC---------------AGTATCGCT---------------------------------------------------------------------ACCATATAATTTAATGTGAACT-AAGAAATT--
droEle1 scf7180000491043:401495-401575 - TT---------------------T-------------------------------------------------------------------------------------------------------------------------------------------TTTTTT--TGTTTGTTTGT---------------G----------------------------------------------------------------------------------------------TG-TG-TAGT-A-------GAGTGAGTATTG---------------AGTATCGGT---------------------------------------------------------------------ACCATAAAATTTAATGTGTCCT-AAGGAATT--
droRho1 scf7180000779976:138715-138835 - TT---------------------T---------------------------T---------T---TTGTATT-------------------------------------------------------------------------------------------TA------TATTTCTTT-----------------GGTTGCGATTGCGATAGCGATAACGAAT------------------------------------------------TTTTT-TGT---------TTGT-GTGTGT-A-------GAGAGGGTATTG---------------AGTATCGGT---------------------------------------------------------------------ACCATATAACTTAATGTGTCCT-AAGAAATT--
droBia1 scf7180000302069:772587-772654 + AC---------------------T-------------------------------------------------------------------------------------------------------------------------------------------TT--------------------------------------------------------------------------------------------------------------------T---------TTTT-GTGAGT-A-------GAGTTGGTATTG---------------AGTATCGGT---------------------------------------------------------------------ACCATATAATTTAATGTCTCCT-AAGGAATT--
droTak1 scf7180000415077:38619-38700 + AC---------TG----------T---------------------------A---------TATTACTTAAT-------------------------------------------------------------------------------------------TT------------------------------------------------------------------------------------------------------------------TTT---------TTTT-GTGTAG-A-------GAGTAGGTATT-----------------GTATCGGT---------------------------------------------------------------------ACCATATAATTTAATGTCTCCT-AAGGAATT--
droEug1 scf7180000408973:282681-282754 - TA---------------------A-------------------------------------------------------------------------------------------------------------------------------------------TACTTT--------------------------------------------------------------------------------------------------------------TTT---------TTTT-GTGAGT-A-------GACTGGGTACTG---------------GGTATCAGT---------------------------------------------------------------------ACCATATAATTTAATGTCTCCT-AAGGAATT--
dm3 chrX:1066662-1066748 + TG---------------------T---------------------------G---------TATTGCGGACAT------------------------------------------------------------------------------------------TTTTTT--------------------------------------------------------------------------------------------------------------TGT---------TTGT-GTGTGT-A-------TAGTGGGCACCG---------------AGTATCGGT---------------------------------------------------------------------GCCGTAGTATTTAATGTCTCCT-AAGGAATT--
droSim2 x:956032-956105 + AT---------------------T-------------------------------------------------------------------------------------------------------------------------------------------TTTTTT--------------------------------------------------------------------------------------------------------------TGT---------TTGT-GTGTGT-A-------TAGTGGGCACCG---------------AGTATCGGT---------------------------------------------------------------------GCCGTATAATTTAATGTCTCCT-AAGGAATT--
droSec2 scaffold_10:897241-897313 + AT---------------------T--------------------------------------------------------------------------------------------------------------------------------------------TTTTT--------------------------------------------------------------------------------------------------------------TGT---------TTGT-GTGTGT-A-------TAGTGGGCACCG---------------AGTATCGGT---------------------------------------------------------------------GCCGTATAATTTAATGTCTCCT-AAGGAATT--
droYak3 X:980650-980750 + AC-AC-----CTG----------T---------------------------G---------TATTACTGACT-------------------------------------------------------------------------------------------TTTTTTTTTGTT--TGTC--------------------------------------------------------------------------------------------------TGT---------TTGT-GTGTGT-A-------TAGTGGGCACCG---------------AGTATCGGT---------------------------------------------------------------------GCCGTATAATTTAATGTCTCCT-AAGGAATT--
droEre2 scaffold_4644:1052130-1052215 + TG---------------------T---------------------------G---------TATTACTGACT-------------------------------------------------------------------------------------------TTTTTT--------------------------------------------------------------------------------------------------------------TGT---------TTGT-GTGTGT-A-------TAGTGGGTACCG---------------AGTATCGGT---------------------------------------------------------------------GCCGTATAATTTAATGTCTGCT-AAGGAATT--

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
TACAAGTAAATCTTTTATAGTATTTCGGCGAACTTCAACGTCAGCCCCTCCTTAGTGGTTATATTTTGTATT-------------------------------------------------------------------------------------------TTTTTT--TATTTCTTTCTGTTTGGTCAGTCAGCGATTGCGATAACGATAGCGATAACGGGTGGCCGGATAATGGTTCCCATGCATATGTGCTACCACTTTATTATGTATTACTTTTTT----------TT--TCTA-CCG-------TAGTGAGTATTGA-------------GAGTATTGGT---------------------------------------------------------------------ACCATATAATTTAATGTCTCTT-AAGGAATT--SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................................................................................................................................................................................................GCGATTGCGATAACGATAGC..........................................................................................................................................................................................................................................2015.005410000
........AATCTTTTATAGTATTTCGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................2114.004400000
................................................................................................................................................................................CTTTCTGTTTGGTCAGTCAGCGATTGC......................................................................................................................................................................................................................................................2714.004310000
.....................................................................ATT-------------------------------------------------------------------------------------------TTTTTT--TATTTCTTTCTGTTTGGTC...................................................................................................................................................................................................................................................................2813.003300000
..............TTATAGTATTTCGGCGAACTTCAACGTC.......................................................................................................................................................................................................................................................................................................................................................................................................................2813.003300000
.....................ATTTCGGCGAACTTCAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................1813.003300000
.......................................................................................................................................................................TT--TATTTCTTTCTGTTTGGTC...................................................................................................................................................................................................................................................................2113.003300000
.................................TTCAACGTCAGCCCCTCCTTAGTG........................................................................................................................................................................................................................................................................................................................................................................................................2413.003300000
.............................................................................................................................................................................................................................................................................................................................GTATTGA-------------GAGTATTGGT---------------------------------------------------------------------A................................1812.002200000
..................................................................................................................................................................................TTCTGTTTGGTCAGTCAGCGATTGC......................................................................................................................................................................................................................................................2512.002200000
......................................................................................................................................................................................GTTTGGTCAGTCAGCGATT........................................................................................................................................................................................................................................................1912.002200000
..................................................................................................................................................................................................AGCGATTGCGATAACGATAGC..........................................................................................................................................................................................................................................2112.002020000
.....................ATTTCGGCGAACTTCAACGTCAGCCCC.................................................................................................................................................................................................................................................................................................................................................................................................................2712.002200000
.............................................................................................................................................................................................................................................................................GTATTACTTTTTT----------TT--TCTA-CCG-------TAGT......................................................................................................................................2612.002200000
..................................................................................................................................................................................TTCTGTTTGGTCAGTCAGC............................................................................................................................................................................................................................................................1912.002011000
..............................................................................................................................................................................................................AACGATAGCGATAACGGGT................................................................................................................................................................................................................................1912.002020000
.....................ATTTCGGCGAACTTCAACGTC.......................................................................................................................................................................................................................................................................................................................................................................................................................2112.002200000
.........ATCTTTTATAGTATTTCGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002200000
........................................................................................................................................................................T--TATTTCTTTCTGTTTGGTC...................................................................................................................................................................................................................................................................2012.002200000
.....................................................................................................................................................................................................................GCGATAACGGGTGGCCGGATAATGG...................................................................................................................................................................................................................2512.002010001
.....................................................................................................................................................................................................................GCGATAACGGGTGGCCGGAT........................................................................................................................................................................................................................2012.002200000
.....................ATTTCGGCGAACTTCAACGT........................................................................................................................................................................................................................................................................................................................................................................................................................2012.002200000
.........................................................................................................................................................................................................................................................................................................CTA-CCG-------TAGTGAGTATTGA-------------GA..............................................................................................................2112.002001001
.............................................................................................................................................................................................................................................................................GTATTACTTTTTT----------TT--TCTA-CC..................................................................................................................................................2112.002200000
...........CTTTTATAGTATTTCGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002200000
........................................................................................................................................................................................................................ATAACGGGTGGCCGGATAATGGT..................................................................................................................................................................................................................2311.001001000
............................................................................................................................................................................................................ATAACGATAGCGATAACGGGT................................................................................................................................................................................................................................2111.001010000
........................................................................................................................................................................T--TATTTCTTTCTGTTTGGT....................................................................................................................................................................................................................................................................1911.001001000
........................................................................................................................................................................T--TATTTCTTTCTGTTTGGTCAGTC...............................................................................................................................................................................................................................................................2411.001100000
...........................................................................................................................................................................................................................................................................................................................GAGTATTGA-------------GAGTATTGGT---------------------------------------------------------------------.................................1911.001000001
............................................................................................................................................................................ATTTCTTTCTGTTTGGTCAGT................................................................................................................................................................................................................................................................2111.001100000
............................................................................................................................................................................................................ATAACGATAGCGATAACGGGTGGCCGGAT........................................................................................................................................................................................................................2911.001100000
........................................................................................................................................................................T--TATTTCTTTCTGTTTGGTCA..................................................................................................................................................................................................................................................................2111.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTAATGTCTCTT-AAGGA.....1911.001001000
.................................................................................................................................................................................TTTCTGTTTGGTCAGTCAGCGATTG.......................................................................................................................................................................................................................................................2511.001000001
...........CTTTTATAGTATTTCGGCGAACTTCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
........AATCTTTTATAGTATTTCGGCGAAC................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
.........ATCTTTTATAGTATTTCGGCGAAC................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
...............................................................................................................................................................................................................................................................................ATTACTTTTTT----------TT--TCTA-CCG-------TAGTG.....................................................................................................................................2511.001010000
.................................TTCAACGTCAGCCCCTCCTTAGT.........................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
....................................................................................................................................................................................................CGATTGCGATAACGATAGC..........................................................................................................................................................................................................................................1911.001001000
...................................................................................................................................................................................................................................................................................................................................A-------------GAGTATTGGT---------------------------------------------------------------------ACCATATA.........................1911.001001000
......................................................................................................................................................................................GTTTGGTCAGTCAGCGATTGCG.....................................................................................................................................................................................................................................................2211.001000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTTAATGTCTCTT-AAGGA.....2211.001010000
...................................................................................................................................................................TTTTTT--TATTTCTTTCTGTTTGGTC...................................................................................................................................................................................................................................................................2511.001100000
......................................................................................................................................................................................GTTTGGTCAGTCAGCGATTGCGATA..................................................................................................................................................................................................................................................2511.001100000
...........................................................................................................................................................................................................GATAACGATAGCGATAACGG..................................................................................................................................................................................................................................2011.001000001
.......................................................................................................................................................................................................................GATAACGGGTGGCCGGATAATGGT..................................................................................................................................................................................................................2411.001000001
...................................CAACGTCAGCCCCTCCTTAGT.........................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
................................................................................................................................................................................CTTTCTGTTTGGTCAGTC...............................................................................................................................................................................................................................................................1811.001100000
....................................................................................................................................................................................................................................CGGATAATGGTTCCCATGC..........................................................................................................................................................................................................1911.001010000
.....................................................................................................................................................................................TGTTTGGTCAGTCAGCGATTGCG.....................................................................................................................................................................................................................................................2311.001001000
.....................ATTTCGGCGAACTTCAACGTCAGCCCCT................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
.....................................................................................................................................................................................................GATTGCGATAACGATAGC..........................................................................................................................................................................................................................................1811.001100000
...............................................................................................................................................................................................................................................................................................................................ATTGA-------------GAGTATTGGT---------------------------------------------------------------------ACCAT............................2011.001010000
............................................................................................................................................................................ATTTCTTTCTGTTTGGTC...................................................................................................................................................................................................................................................................1811.001100000
....................................................................................................................................................................................................................AGCGATAACGGGTGGCCGGATAAT.....................................................................................................................................................................................................................2411.001000001
....................................................................TATT-------------------------------------------------------------------------------------------TTTTTT--TATTTCTTTCTGTTTGGTC...................................................................................................................................................................................................................................................................2911.001100000
...............................................................................................................................................................................................................................................................................................................................ATTGA-------------GAGTATTGGT---------------------------------------------------------------------ACC..............................1811.001001000
...............................................................................................................................................................................................................................................................................ATTACTTTTTT----------TT--TCTA-CCG-------T.........................................................................................................................................2111.001100000
.................................................................................................................................................................................................................GATAGCGATAACGGGTGGCCGGATAAT.....................................................................................................................................................................................................................2711.001000001
..........TCTTTTATAGTATTTCGGCGA..................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
..........................................................................................................................................................................................................CGATAACGATAGCGATAAC....................................................................................................................................................................................................................................1911.001010000
..............................................................................................................................................................................TTCTTTCTGTTTGGTCAGTCAGC............................................................................................................................................................................................................................................................2311.001010000
.....................ATTTCGGCGAACTTCAACGTCAGCCC..................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAATGTCTCTT-AAGGA.....1811.001010000
...........CTTTTATAGTATTTCGGCGAAC................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.............................................................................................................................................................................................CAGTCAGCGATTGCGATAACGAT.............................................................................................................................................................................................................................................2311.001001000
.....................................................................................................................................................................................................GATTGCGATAACGATAGCGAT.......................................................................................................................................................................................................................................2111.001000001
................................CTTCAACGTCAGCCCCTCCTTAGTG........................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
...........................................................................................................................................................................................................GATAACGATAGCGATAACG...................................................................................................................................................................................................................................1921.002000002
.............................GAACTTCAACGTCAGCCCCTCC..............................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
.................................................................................................................................................................................................CAGCGATTGCGATAACGATAGC..........................................................................................................................................................................................................................................2211.001001000
.............................................................................................................................................................................................CAGTCAGCGATTGCGATAACGATAGC..........................................................................................................................................................................................................................................2611.001001000
...........................................................................................................................................................................................................GATAACGATAGCGATAACGGGT................................................................................................................................................................................................................................2211.001000001
...........CTTTTATAGTATTTCGGCG...................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.....................................................................................................................................................................TTTT--TATTTCTTTCTGTTTGGTC...................................................................................................................................................................................................................................................................2311.001100000
......................................................................................................................................................................TTT--TATTTCTTTCTGTTTGGTC...................................................................................................................................................................................................................................................................2211.001100000
............................................................................................................................................................................................................ATAACGATAGCGATAACG...................................................................................................................................................................................................................................1820.501100000
dp5
TA-AAG-AAATCTTTTATAGTATTTCGGCGAACTTCAACGTCAGCCCCTCCTTAGTGGTTATATTTTGTATT-------------------------------------------------------------------------------------------TTTTTT--TATTTCTTTCTGTTTGGTCAGTCAGCGATTGCGATAACGATAGCGATAACGGGTGGCCGGATAATGGTTCCCATGCATATGTGCTACCACCTTATTATGTATTACTTTTTT---------TTT--TCTA-CCG-------TAGTGAGTATTGA-------------GAGTATTGGT---------------------------------------------------------------------ACCATATAATTTAATGTCTCTT-AAGGAATT--SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................................................................................................................................................................................................GTTCCCATGCATATGTGCTACCACCT..........................................................................................................................................................................................2612.0020200000000
..............................................................................................................................................................................................................AACGATAGCGATAACGGGT................................................................................................................................................................................................................................1912.0020200000000
.............................................................................................................................................................................................CAGTCAGCGATTGCGATAACGATAGC..........................................................................................................................................................................................................................................2612.0020200000000
.......................................................................................................................................................................................................................GATAACGGGTGGCCGGATAAT.....................................................................................................................................................................................................................2112.0020200000000
............................................................................................................................................................................ATTTCTTTCTGTTTGGTCAGTCAGC............................................................................................................................................................................................................................................................2512.0020200000000
................................................................................................................................................................................................................CGATAGCGATAACGGGTGGC.............................................................................................................................................................................................................................2012.0020200000000
...............................................................................................................................................................................................................................................................................ATTACTTTTTT---------TTT--TCTA-CCG-------TAGTGA....................................................................................................................................2712.0020110000000
...............................................................................................................................................................................................................................................................................................................................ATTGA-------------GAGTATTGGT---------------------------------------------------------------------ACCAT............................2012.0020101000000
........................................................................................................................................................................T--TATTTCTTTCTGTTTGGTCAGT................................................................................................................................................................................................................................................................2312.0020200000000
......................................................................................................................................................................................GTTTGGTCAGTCAGCGATTGC......................................................................................................................................................................................................................................................2111.0010000100000
...............................................................................................................................................................................................GTCAGCGATTGCGATAACGAT.............................................................................................................................................................................................................................................2111.0010100000000
.............................................................................................................................................................................................CAGTCAGCGATTGCGATAACGATAGCG.........................................................................................................................................................................................................................................2711.0010100000000
..........TCTTTTATAGTATTTCGGCGAAC................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010000000
......................................CGTCAGCCCCTCCTTAGT.........................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
.................................................................................................................................................................................................CAGCGATTGCGATAACGATAGCG.........................................................................................................................................................................................................................................2311.0010100000000
....................................................................................................................................................................................................................................................................................................TT--TCTA-CCG-------TAGTGAGTATTGA-------------GAGT............................................................................................................2611.0010000001000
.........................................................................................................................................................................................................................................................................................................CTA-CCG-------TAGTGAGTATTGA-------------GA..............................................................................................................2111.0010100000000
..........................................................................................................................................................................................................................AACGGGTGGCCGGATAATGGTTC................................................................................................................................................................................................................2311.0010100000000
.................................TTCAACGTCAGCCCCTCCTTAGTG........................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTAATGTCTCTT-AAGGAAT...2211.0010010000000
.............................................................................................................................................................................................CAGTCAGCGATTGCGATAAC................................................................................................................................................................................................................................................2011.0010100000000
....................................................................................................................................................................................................................................CGGATAATGGTTCCCATGC..........................................................................................................................................................................................................1911.0010100000000
.....................................................................................................................................................................................................GATTGCGATAACGATAGCG.........................................................................................................................................................................................................................................1911.0010100000000
..............................................................................................................................................................................TTCTTTCTGTTTGGTCAGTCAGCG...........................................................................................................................................................................................................................................................2411.0010100000000
.........ATCTTTTATAGTATTTCGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100000
........................................................................................................................................................................................TTGGTCAGTCAGCGATTGCGATA..................................................................................................................................................................................................................................................2311.0010100000000
.......................................................................................................................................................................................................................GATAACGGGTGGCCGGAT........................................................................................................................................................................................................................1811.0010100000000
...............................................................................................................................................................................................................................................................................................................G-------TAGTGAGTATTGA-------------GAGTATTGGT---------------------------------------------------------------------A................................2511.0010000100000
..................................................................................................................................................................................................................................................CATGCATATGTGCTACCACCTTATTATGC..................................................................................................................................................................................2911.0010010000000
...............................................................................................................................................................................................................................................................................................................................ATTGA-------------GAGTATTGGT---------------------------------------------------------------------ACCATA...........................2111.0010100000000
...........CTTTTATAGTATTTCGGCGAAC................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
..................................................................................................................................................................................................................................................................................................................................GA-------------GAGTATTGGT---------------------------------------------------------------------ACCATATAATTTA....................2511.0010000100000
........AATCTTTTATAGTATTTCGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..............................................................ATTTTGTATT-------------------------------------------------------------------------------------------TTTTTT--TATTTCTTTCTGT.........................................................................................................................................................................................................................................................................2911.0010100000000
...............................................................................................................................................................................................................................................................................ATTACTTTTTT---------TTT--TCTA-CCG-------TAGTGAG...................................................................................................................................2811.0010100000000
..........................................................................................................................................................................................................................AACGGGTGGCCGGATAATGGTT.................................................................................................................................................................................................................2211.0010000001000
.....................................................................................................................................................................................................................GCGATAACGGGTGGCCGGATAAT.....................................................................................................................................................................................................................2311.0010000010000
......................................................................................................................................................................................................................CGATAACGGGTGGCCGGAT........................................................................................................................................................................................................................1911.0010000001000
..........................................................................................................................................................................................................................AACGGGTGGCCGGATAAT.....................................................................................................................................................................................................................1811.0010100000000
...........................................................................................................................................................................................................................................................................................................A-CCG-------TAGTGAGTATTGA-------------GA..............................................................................................................1911.0010100000000
......................................................................................................................................................................TTT--TATTTCTTTCTGTTTGGTCAGT................................................................................................................................................................................................................................................................2511.0010010000000
.....................ATTTCGGCGAACTTCAACGTC.......................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010000000
.......................................................................................................................................................................................TTTGGTCAGTCAGCGATTGC......................................................................................................................................................................................................................................................2011.0010100000000
.............................................................................................................................................................................................................TAACGATAGCGATAACGGGTGGC.............................................................................................................................................................................................................................2311.0010100000000
................................................................................................................................................................................................................................TGGCCGGATAATGGTTCCCATGC..........................................................................................................................................................................................................2311.0010100000000
..............................................................................................................................................................................................AGTCAGCGATTGCGATAACGATAGCG.........................................................................................................................................................................................................................................2611.0010100000000
...............................................................................................................................................................................................................................................................................ATTACTTTTTT---------TTT--TCTA-CCG-------TA........................................................................................................................................2311.0010000100000
.........................................................................................................................................................................................................................................AATGGTTCCCATGCATATGTGCTA................................................................................................................................................................................................2411.0010010000000
........................................................................................................................................................................................................TGCGATAACGATAGCGATAACGGGT................................................................................................................................................................................................................................2511.0010100000000
.......................................................................................................................................................................................................................GATAACGGGTGGCCGGATAATGGTTCCC..............................................................................................................................................................................................................2811.0010100000000
...............................................................................................................................................................................................................................................................................................................................ATTGA-------------GAGTATTGGT---------------------------------------------------------------------ACCATATA.........................2311.0010010000000
.........................................................................................................................................................................................................................................................................................................................GTGAGTATTGA-------------GAGTATTGGT---------------------------------------------------------------------AC...............................2311.0010100000000
.................................................................................................................................................................................................CAGCGATTGCGATAACGATAGC..........................................................................................................................................................................................................................................2211.0010100000000
................................................................................................................................................................................................................................................CCCATGCATATGTGCTACCAC............................................................................................................................................................................................2111.0010010000000
..............................................................................................................................................................................................AGTCAGCGATTGCGATAACGATAGC..........................................................................................................................................................................................................................................2511.0010000100000
......................................................................................................................................................................................................................................................................................TTTT---------TTT--TCTA-CCG-------TAGTGAGTATTGA-------------................................................................................................................2711.0010010000000
..................................TCAACGTCAGCCCCTCCTTAGTGGT......................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTTAATGTCTCTT-AAGGA.....2211.0010000100000
...........................................................................................................................................................................TATTTCTTTCTGTTTGGTCA..................................................................................................................................................................................................................................................................2011.0010100000000
..................................................................................................................................................................................TTCTGTTTGGTCAGTCAGCGATTGCGAT...................................................................................................................................................................................................................................................2811.0010010000000
.......................................................................................................................................................................................................................GATAACGGGTGGCCGGATAATGGTT.................................................................................................................................................................................................................2511.0010100000000
.........................................................................................................................................................................................................................................................................................................CTA-CCG-------TAGTGAGTATTGA-------------GAGT............................................................................................................2311.0010100000000
.............................GAACTTCAACGTCAGCCCCTCCTTAGTG........................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
.........................................................................................................................................................................................................................TAACGGGTGGCCGGATAATGGTTCCC..............................................................................................................................................................................................................2611.0010000100000
............................................................................................................................................................................................................ATAACGATAGCGATAACGGGTGGCCG...........................................................................................................................................................................................................................2611.0010100000000
.......................................................................................................................................................................................................................GATAACGGGTGGCCGGATA.......................................................................................................................................................................................................................1911.0010000010000
.................................................................................................................................................................................................................................GGCCGGATAATGGTTCCCATGC..........................................................................................................................................................................................................2211.0010100000000
.....................................................................................................................................................................................................GATTGCGATAACGATAGCGAT.......................................................................................................................................................................................................................................2111.0010100000000
...............................................................................................................................................................................................................ACGATAGCGATAACGGGTGGCCGGAT........................................................................................................................................................................................................................2611.0010100000000
..................................................................................................................................................................................TTCTGTTTGGTCAGTCAGCGA..........................................................................................................................................................................................................................................................2111.0010100000000
...............................ACTTCAACGTCAGCCCCTC...............................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATATAATTTAATGTCTCTT-AAGGA.....2711.0010010000000
..........................................................................................................................................................................................................................AACGGGTGGCCGGATAATG....................................................................................................................................................................................................................1911.0010100000000
...................................................................................................................................................................................TCTGTTTGGTCAGTCAGCGAT.........................................................................................................................................................................................................................................................2111.0010100000000
.............................GAACTTCAACGTCAGCCCCTCCTTAGT.........................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
........................................................................................................................................................................T--TATTTCTTTCTGTTTGGC....................................................................................................................................................................................................................................................................1920.5010010000000
droVir3
CA---------------------T---------------------------T---------TTTTTTTTTGT-------------------------------------------------------------------------------------------TTTTTT--TTTTTCTCCCT---------------A----------------------------------------------------------------------------------------------TC-TG-CA---A-------TAATGA-----G---------------AGTAGTGAT---------------------------------------------------------------------ACCAT----------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...................................................................................................................................................................................CCT---------------A----------------------------------------------------------------------------------------------TC-TG-CA---A-------TAATGA-----G---------------AGT............................................................................................................2112.002001000000000001000000000000000000000000000000000000000000000000
...........................................................................................................................................................................TTTTTCTCCCT---------------A----------------------------------------------------------------------------------------------TC-TG-CA---A-------T.........................................................................................................................................2011.001000000000000001000000000000000000000000000000000000000000000000
.................................................................................................................................................................................TCCCT---------------A----------------------------------------------------------------------------------------------TC-TG-CA---A-------TAATGA-----G---------------AGTAG..........................................................................................................2511.001000010000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................A----------------------------------------------------------------------------------------------TC-TG-CA---A-------TAATGA-----G---------------AGTAGTG........................................................................................................2211.001000000000000000000000000000000000000000000000000000000000001000
......................................................................................................................................................................TTT--TTTTTCTCCCT---------------A----------------------------------------------------------------------------------------------TC-TG-CA---A-------T.........................................................................................................................................2311.001000000000000000000000000000010000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................C-TG-CA---A-------TAATGA-----G---------------AGTAGT.........................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................CTCCCT---------------A----------------------------------------------------------------------------------------------TC-TG-CA---A-------TAATGA-----G---------------A..............................................................................................................2211.001000000000000000000000000000001000000000000000000000000000000000
.............................................................................................................................................................................TTTCTCCCT---------------A----------------------------------------------------------------------------------------------TC-TG-CA---A-------T.........................................................................................................................................1811.001000000000000001000000000000000000000000000000000000000000000000
.............................................................................................................................................................................TTTCTCCCT---------------A----------------------------------------------------------------------------------------------TC-TG-CA---A-------TAATGA-----G---------------AGT............................................................................................................2711.001000100000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................T--TTTTTCTCCCT---------------A----------------------------------------------------------------------------------------------TC-TG-CA---A-------T.........................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................TTCTCCCT---------------A----------------------------------------------------------------------------------------------TC-TG-CA---A-------TAATGA-----G---------------A..............................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................TTCTCCCT---------------A----------------------------------------------------------------------------------------------TC-TG-CA---A-------TAATG.....................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
droGri2
TA-AA-----ATGTTTATAGTATTTCT------------------TACTGAT---------TATTGATTAAAT------TTTT--------------------------------------------------------------------------------TTTTTT--TGTGTTTTTTTTTTTTGTTAGTTTCGG----------------------------------------------------------------------------------------------TT-TG-CGAG-AATGAAAGTAGT-GGCAACG---------------TTTTCATGTATTGTTAAAGTATTTGTATTCATGTGTATGTTGTTGCCTTATTTTTTTTTATACTTATGTGCGGTGAGT----TGTAATTTAATGACTACTTTATTTATA--SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
....................................................................................................................................................................................................GG----------------------------------------------------------------------------------------------TT-TG-CGAG-AATGAAAGTAGT-GGC..................................................................................................................................2511.00110
...........................................................................................................................................................................................GTTAGTTTCGG----------------------------------------------------------------------------------------------TT-TG-CGA....................................................................................................................................................1811.00110
........................................................................................................................................................................................................................................................................................................G-CGAG-AATGAAAGTAGT-GGC..................................................................................................................................2011.00110
.................................................................................................................................................................................................................................................................................................................................CG---------------TTTTCATGTATTGTTAAAGTATTT.......................................................................................2611.00110
...........................................................................................................................................................................................................................................................................................................................................................ATTGTTAAAGTATTTGTATTCAT...............................................................................2311.00110
droAna3
CT---------------------C--------------------------TTTAGTTCTTTTAGAATTTAGT-TTC--TTTTTTTTCCAAGTGTTTGACCATCGAAATAGCCCCCGATAGCGATAACGAAAGCTTATATATTACCTATACCTTATAAGCTA---------------------------------------------------------------------------------------------------------------TTTTTTTTTTGTTCTTTATTTT--TTTT-ATG-------TTCTTTTTTTTCGGTCTATTGG-----TACAT-AGA---------------------------------------------------------------------TCCATATAACTTAATGTCTCCC-AGCGAATT--SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................................................................................................................................................................................................................................................................................................TTTTTCGGTCTATTGG-----TACAT-A........................................................................................................2212.002110000
.......................................................................................................................................ATATATTACCTATACCTTATAAGCT.................................................................................................................................................................................................................................................................................................2512.002020000
.................................................................ATTTAGT-TTC--TTTTTTTTCCAAGTGTTT.................................................................................................................................................................................................................................................................................................................................................................2811.001010000
...............................................................................................TGACCATCGAAATAGCCCCCGATAGC........................................................................................................................................................................................................................................................................................................................................2611.001000010
..........................................................................................GTGTTTGACCATCGAAATAGCCCCC..............................................................................................................................................................................................................................................................................................................................................2511.001010000
...................................................................................................CATCGAAATAGCCCCCGATAGC........................................................................................................................................................................................................................................................................................................................................2211.001010000
.........................................................................................................................................................................................................................................................................................................TTT-ATG-------TTCTTTTTTTTCGGTCT.........................................................................................................................2311.001010000
................................................................................................................CCCGATAGCGATAACGAAAGCTT..........................................................................................................................................................................................................................................................................................................................2311.001001000
................................................................................................................................................................................................................................................................................................................................................................................................................................TCCATATAACTTAATGTCTCC............2111.001010000
..........................................................................................................................................TATTACCTATACCTTATAAGCT.................................................................................................................................................................................................................................................................................................2211.001010000
.........................................................................................................................................................................................................................................................................................................................................................GA---------------------------------------------------------------------TCCATATAACTTAATGTCTCCC-A.........2511.001010000
..............................................................................................TTGACCATCGAAATAGCCCCCGATAGC........................................................................................................................................................................................................................................................................................................................................2711.001010000
.......................................................................................................................................................................................................................................................................................................................TTCTTTTTTTTCGGTCTATTGG-----TAC............................................................................................................2511.001010000
............................................................................................................................................................................................................................................................................................................................TTTTTTCGGTCTATTGG-----TACAT-A........................................................................................................2311.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACTTAATGTCTCCC-AGCGAAT...2411.001010000
.........................................................................................................................................................................................................................................................................................................................................................GA---------------------------------------------------------------------TCCATATAACTTAATGTCTCCC-..........2411.001010000
.........................................................................................................................................................................................................................................................................................................................................................GA---------------------------------------------------------------------TCCATATAACTTAATGTCTCCC-AGC.......2711.001010000
droBip1
AC---------------------TGCGGCAAACT----CGTTAGTTCTT--TTAGAATTTATATTCTTTTGT-TTTTTTTTTTCTTCCAAGTGTTTGACCATCGAAATAGCCCCCGATAGCGATAACGAAAGCTTATATATTACCTCTACTTTATAAGCTACTTTTTTT--------------------------------------------------------------------------------------------------------------TGT---------TTTT-TTCT---------------------TCGGTCTATTGGCTACATACATAGA----------------------------------------------------------------------TCCATATAATTTAATGTCTCAT-AGGGAATT--SizeHit CountTotal NormTotal
No Reads
droKik1
TG---------------------T---------------------------A---------TATTACCTATT-------------------------------------------------------------------------------------------ATTTCGGTTTCT--TTTT--------------------------------------------------------------------------------------------------TTT---------TTGT-TTAG-CAG-------TAGTGGGCACCGA---------TCGCAAGTATCGGT---------------------------------------------------------------------GCCATATAATTTAACGTCTCGC-AAGGAATTGASizeHit CountTotal NormTotal
No Reads
droFic1
TT---------------------T--------------------------------------------------------------------------------------------------------------------------------------------TTTTT--TGTTGCTATCT-------------------------------------------------------------------------------------------TAGTT----------------------------------TTTTGATAGCC---------------AGTATCGCT---------------------------------------------------------------------ACCATATAATTTAATGTGAACT-AAGAAATT--SizeHit CountTotal NormTotal
No Reads
droEle1
TT---------------------T-------------------------------------------------------------------------------------------------------------------------------------------TTTTTT--TGTTTGTTTGT---------------G----------------------------------------------------------------------------------------------TG-TG-TAGT-A-------GAGTGAGTATTG---------------AGTATCGGT---------------------------------------------------------------------ACCATAAAATTTAATGTGTCCT-AAGGAATT--SizeHit CountTotal NormTotal
No Reads
droRho1
TT---------------------T---------------------------T---------T---TTGTATT-------------------------------------------------------------------------------------------TA------TATTTCTTT-----------------GGTTGCGATTGCGATAGCGATAACGAAT------------------------------------------------TTTTT-TGT---------TTGT-GTGTGT-A-------GAGAGGGTATTG---------------AGTATCGGT---------------------------------------------------------------------ACCATATAACTTAATGTGTCCT-AAGAAATT--SizeHit CountTotal NormTotal
No Reads
droBia1
AC---------------------T-------------------------------------------------------------------------------------------------------------------------------------------TT--------------------------------------------------------------------------------------------------------------------T---------TTTT-GTGAGT-A-------GAGTTGGTATTG---------------AGTATCGGT---------------------------------------------------------------------ACCATATAATTTAATGTCTCCT-AAGGAATT--SizeHit CountTotal NormTotal
No Reads
droTak1
AC---------TG----------T---------------------------A---------TATTACTTAAT-------------------------------------------------------------------------------------------TT------------------------------------------------------------------------------------------------------------------TTT---------TTTT-GTGTAG-A-------GAGTAGGTATT-----------------GTATCGGT---------------------------------------------------------------------ACCATATAATTTAATGTCTCCT-AAGGAATT--SizeHit CountTotal NormTotal
No Reads
droEug1
TA---------------------A-------------------------------------------------------------------------------------------------------------------------------------------TACTTT--------------------------------------------------------------------------------------------------------------TTT---------TTTT-GTGAGT-A-------GACTGGGTACTG---------------GGTATCAGT---------------------------------------------------------------------ACCATATAATTTAATGTCTCCT-AAGGAATT--SizeHit CountTotal NormTotal
No Reads
dm3
TG---------------------T---------------------------G---------TATTGCGGACAT------------------------------------------------------------------------------------------TTTTTT--------------------------------------------------------------------------------------------------------------TGT---------TTGT-GTGTGT-A-------TAGTGGGCACCG---------------AGTATCGGT---------------------------------------------------------------------GCCGTAGTATTTAATGTCTCCT-AAGGAATT--SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................................................................................................................................................................................................................................................................................................G---------------AGTATCGGT---------------------------------------------------------------------GCCGTAGT.........................1815.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...............................................................................................................................................................................................................................................................................................................................ACCG---------------AGTATCGGT---------------------------------------------------------------------GCCGTAGT.........................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTAATGTCTCCT-AAGG......1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................GTGTGT-A-------TAGTGGGCACC...............................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................TTGT-GTGTGT-A-------TAGTGGGC..................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................GT---------TTGT-GTGTGT-A-------TAGTGGGC..................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
......................................................................................................................................................................TTT--------------------------------------------------------------------------------------------------------------TGT---------TTGT-GTGTGT-A-------TAGTGGGCACC...............................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000
....................................................................................................................................................................................................................................................................................................TGT-GTGTGT-A-------TAGTGGGC..................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................TTGT-GTGTGT-A-------TAGTGGGCAC................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................T---------TTGT-GTGTGT-A-------TAGTGGGC..................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000
....................................................................................................................................................................................................................................................................................................TGT-GTGTGT-A-------TAGTGGGCACC...............................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................TTTT--------------------------------------------------------------------------------------------------------------TGT---------TTGT-GTGTGT-A-------..........................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................T--------------------------------------------------------------------------------------------------------------TGT---------TTGT-GTGTGT-A-------TAGTGGG...................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................TT--------------------------------------------------------------------------------------------------------------TGT---------TTGT-GTGTGT-A-------TAGTGGGC..................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.................................................................................................................................................................................................................................................................................................................................CG---------------AGTATCGGT---------------------------------------------------------------------GCCGTAGTATTT.....................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................CG---------------AGTATCGGT---------------------------------------------------------------------GCCGTAGT.........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................TGT---------TTGT-GTGTGT-A-------TAGTGGGCAC................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................CAT------------------------------------------------------------------------------------------TTTTTT--------------------------------------------------------------------------------------------------------------TGT---------TTGT-GT.......................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGTAGTATTTAATGTCT..............1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.....................................................................................................................................................................................................................................................................................................GT-GTGTGT-A-------TAGTGGGCACC...............................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...............................................................................................................................................................................................................................................................................................................A-------TAGTGGGCACCG---------------AGTATC.........................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................CAT------------------------------------------------------------------------------------------TTTTTT--------------------------------------------------------------------------------------------------------------TGT---------TTGT-GTGT.....................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTATTTAATGTCTCCT-AA........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................A-------TAGTGGGCACCG---------------AGTATCGGT---------------------------------------------------------------------GC...............................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
TG---------------------T---------------------------G---------TATTGCGGACAT------------------------------------------------------------------------------------------TTTTTT--------------------------------------------------------------------------------------------------------------TG........................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................A-------TAGTGGGCACCG---------------AGTATCGG.......................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...................................................................................................................................................................TTTTTT--------------------------------------------------------------------------------------------------------------TGT---------TTGT-GTGTG....................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................GT-A-------TAGTGGGCACCG---------------AGTATCGGT---------------------------------------------------------------------.................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................TT--------------------------------------------------------------------------------------------------------------TGT---------TTGT-GTGTGT-A-------TAGTGGG...................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
........................................................................................................................................................................................................................................................................................................................AGTGGGCACCG---------------AGTATCGGT---------------------------------------------------------------------.................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................G---------TATTGCGGACAT------------------------------------------------------------------------------------------TTTTTT--------------------------------------------------------------------------------------------------------------TGT---------..............................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTAATGTCTCCT-AAGGA.....1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................G---------------AGTATCGGT---------------------------------------------------------------------GCCGTAGTA........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................GT-GTGTGT-A-------TAGTGGGCACCG---------------...............................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
....................................................................................................................................................................TTTTT--------------------------------------------------------------------------------------------------------------TGT---------TTGT-GTGTGT-A-------TAGTGGGC..................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................G---------------AGTATCGGT---------------------------------------------------------------------GCCGTAGTAT.......................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................TAGTGGGCACCG---------------AGTATCGG.......................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
................................................................................................................................................................................................................................................................................................................................CCG---------------AGTATCGGT---------------------------------------------------------------------GCCGTAGTATTTAATG.................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
...............................................................................................................................................................................................................................................................................................................................ACCG---------------AGTATCGGT---------------------------------------------------------------------GCCGTAGTATTTAATGT................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................TGT---------TTGT-GTGTGT-A-------TAGTGGGCACC...............................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...................................................................GGACAT------------------------------------------------------------------------------------------TTTTTT--------------------------------------------------------------------------------------------------------------TGT---------TTGT-GTGT.....................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................CG---------------AGTATCGGT---------------------------------------------------------------------GCCGTAGTAT.......................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................A-------TAGTGGGCACCG---------------AGTATCGGT---------------------------------------------------------------------.................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................CCG---------------AGTATCGGT---------------------------------------------------------------------GCCGTAGT.........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................ACCG---------------AGTATCGGT---------------------------------------------------------------------GCCGTAGTAT.......................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AT---------------------T-------------------------------------------------------------------------------------------------------------------------------------------TTTTTT--------------------------------------------------------------------------------------------------------------TGT---------TTGT-GTGTGT-A-------TAGTGGGCACCG---------------AGTATCGGT---------------------------------------------------------------------GCCGTATAATTTAATGTCTCCT-AAGGAATT--SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................................................................................................................................................................................................................GT---------TTGT-GTGTGT-A-------TAGTGGGC..................................................................................................................................2112.00200010000000100000
AT---------------------T-------------------------------------------------------------------------------------------------------------------------------------------TTTTTT--------------------------------------------------------------------------------------------------------------TGT---------TTGT-GTGTGT-A-------TAGTGG....................................................................................................................................2911.00100010000000000000
........................................................................................................................................................................................................................................................................................GT---------TTGT-GTGTGT-A-------TAGTGGG...................................................................................................................................2011.00100000000000100000
.....................................................................................................................................................................................................................................................................................................................................................ATCGGT---------------------------------------------------------------------GCCGTATAATTTAATGTCTCC............2711.00100100000000000000
...................................................................................................................................................................................................................................................................................................TTGT-GTGTGT-A-------TAGTGGGC..................................................................................................................................1911.00100000000000100000
.........................................................................................................................................................................................................................................................................................................................GTGGGCACCG---------------AGTATCGGT---------------------------------------------------------------------.................................1911.00100000000000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGTATAATTTAATGTCTCCT-AAGGAAT...2911.00100010000000000000
.........................................................................................................................................................................................................................................................................................T---------TTGT-GTGTGT-A-------TAGTGGGC..................................................................................................................................2011.00100010000000000000
...................................................................................................................................................................................................................................................................................................TTGT-GTGTGT-A-------TAGTGGGCAC................................................................................................................................2111.00100010000000000000
.....................................................................................................................................................................................................................................................................................................GT-GTGTGT-A-------TAGTGGGCACC...............................................................................................................................2011.00100000000000100000
..................................................................................................................................................................................................................................................................................................................................................AGTATCGGT---------------------------------------------------------------------GCCGTATAATTTAATGTC...............2711.00100100000000000000
.................................................................................................................................................................................................................................................................................................................................CG---------------AGTATCGGT---------------------------------------------------------------------GCCGTATAATTTAAT..................2611.00101000000000000000
droSec2
AT---------------------T--------------------------------------------------------------------------------------------------------------------------------------------TTTTT--------------------------------------------------------------------------------------------------------------TGT---------TTGT-GTGTGT-A-------TAGTGGGCACCG---------------AGTATCGGT---------------------------------------------------------------------GCCGTATAATTTAATGTCTCCT-AAGGAATT--SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................................................................................................................................................................................................................................................................A-------TAGTGGGCACCG---------------AGTATCGGT---------------------------------------------------------------------.................................2212.0020020
........................................................................................................................................................................................................................................................................................................GTGTGT-A-------TAGTGGGCACC...............................................................................................................................1811.0010010
...............................................................................................................................................................................................................................................................................................................A-------TAGTGGGCACCG---------------AGTATCGG.......................................................................................................2111.0010010
........................................................................................................................................................................................................................................................................................................................AGTGGGCACCG---------------AGTATCGGT---------------------------------------------------------------------.................................2011.0010010
....................................................................................................................................................................................................................................................................................................TGT-GTGTGT-A-------TAGTGGGCACC...............................................................................................................................2111.0010010
............................................................................................................................................................................................................................................................................................................GT-A-------TAGTGGGCACCG---------------AGTATCGGT---------------------------------------------------------------------GC...............................2611.0010010
........................................................................................................................................................................................................................................................................................GT---------TTGT-GTGTGT-A-------TAGTGGGC..................................................................................................................................2111.0010010
...............................................................................................................................................................................................................................................................................................................A-------TAGTGGGCACCG---------------AGTATCGGT---------------------------------------------------------------------GC...............................2411.0010010
........................................................................................................................................................................................................................................................................................GT---------TTGT-GTGTGT-A-------TAGTGGGCACC...............................................................................................................................2411.0010010
.........................................................................................................................................................................................................................................................................................T---------TTGT-GTGTGT-A-------TAGTGGGC..................................................................................................................................2011.0010010
.................................................................................................................................................................................................................................................................................................................................CG---------------AGTATCGGT---------------------------------------------------------------------GCCGTAT..........................1811.0010010
.........................................................................................................................................................................................................................................................................................T---------TTGT-GTGTGT-A-------TAGTGGGCACC...............................................................................................................................2311.0010010
.......................................................................................................................................................................TT--------------------------------------------------------------------------------------------------------------TGT---------TTGT-GTGTGT-A-------TAGTGGGC..................................................................................................................................2411.0010010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTTAATGTCTCCT-AAGGAAT...2411.0010010
...............................................................................................................................................................................................................................................................................................................A-------TAGTGGGCACCG---------------AGTATCGGT---------------------------------------------------------------------G................................2311.0010100
.....................................................................................................................................................................................................................................................................................................GT-GTGTGT-A-------TAGTGGGCAC................................................................................................................................1911.0010010
........................................................................................................................................................................T--------------------------------------------------------------------------------------------------------------TGT---------TTGT-GTGTGT-A-------TAGTGGGC..................................................................................................................................2311.0010010
........................................................................................................................................................................................................................................................................................GT---------TTGT-GTGTGT-A-------TAGTGGGCACCG---------------...............................................................................................................2511.0010010
........................................................................................................................................................................................................................................................................................GT---------TTGT-GTGTGT-A-------TAGTGGG...................................................................................................................................2011.0010010
..................................................................................................................................................................................................................................................................................................................................G---------------AGTATCGGT---------------------------------------------------------------------GCCGTATAATT......................2111.0010010
....................................................................................................................................................................................................................................................................................................TGT-GTGTGT-A-------TAGTGGGC..................................................................................................................................1811.0010010
.......................T--------------------------------------------------------------------------------------------------------------------------------------------TTTTT--------------------------------------------------------------------------------------------------------------TGT---------TTGT-GTGTGT-..................................................................................................................................................1920.5010010
AT---------------------T--------------------------------------------------------------------------------------------------------------------------------------------TTTTT--------------------------------------------------------------------------------------------------------------TGT---------TTGT-GTGT.....................................................................................................................................................1920.5010010
droYak3
AC-AC-----CTG----------T---------------------------G---------TATTACTGACT-------------------------------------------------------------------------------------------TTTTTTTTTGTT--TGTC--------------------------------------------------------------------------------------------------TGT---------TTGT-GTGTGT-A-------TAGTGGGCACCG---------------AGTATCGGT---------------------------------------------------------------------GCCGTATAATTTAATGTCTCCT-AAGGAATT--SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................................................................................................................................................................................................................................................................................TGT-GTGTGT-A-------TAGTGGGC..................................................................................................................................1814.00402200000000
........................................................................................................................................................................................................................................................................................GT---------TTGT-GTGTGT-A-------TAGTGGGCACC...............................................................................................................................2413.00301200000000
....................................................................................................................................................................................C--------------------------------------------------------------------------------------------------TGT---------TTGT-GTGTGT-A-------TAGTGGGC..................................................................................................................................2313.00301100010000
....................................................................................................................................................................................C--------------------------------------------------------------------------------------------------TGT---------TTGT-GTGTGT-A-------TAGTGGGCAC................................................................................................................................2513.00301000020000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTTAATGTCTCCT-AAGGAAT...2412.00200000020000
....................................................................................................................................................................................................................................................................................................TGT-GTGTGT-A-------TAGTGGGCACC...............................................................................................................................2112.00200100010000
........................................................................................................................................................................................................................................................................................GT---------TTGT-GTGTGT-A-------TAGTGGGC..................................................................................................................................2112.00201100000000
...............................................................................................................................................................................................................................................................................................................A-------TAGTGGGCACCG---------------AGTATCGGT---------------------------------------------------------------------GC...............................2412.00201100000000
.....................................................................................................................................................................TTTTTTTGTT--TGTC--------------------------------------------------------------------------------------------------TGT---------TTGT-GTGT.....................................................................................................................................................2512.00201000010000
........................................................................................................................................................................................................................................................................................................................AGTGGGCACCG---------------AGTATCGGT---------------------------------------------------------------------.................................2011.00100010000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAATGTCTCCT-AAGGA.....1811.00101000000000
...................................................................................................................................................................TTTTTTTTTGTT--TGTC--------------------------------------------------------------------------------------------------TGT---------..............................................................................................................................................................1911.00100100000000
..........................................................................................................................................................................TTGTT--TGTC--------------------------------------------------------------------------------------------------TGT---------TTGT-GTGTGT-..................................................................................................................................................2211.00100000010000
.......................................................................................................................................................................TTTTTGTT--TGTC--------------------------------------------------------------------------------------------------TGT---------TTGT-G........................................................................................................................................................2011.00100100000000
............................................................................................................................................................................GTT--TGTC--------------------------------------------------------------------------------------------------TGT---------TTGT-GTGTGT-A-------TAGTG.....................................................................................................................................2611.00100000010000
..........................................................................................................................................................................TTGTT--TGTC--------------------------------------------------------------------------------------------------TGT---------TTGT-GTGT.....................................................................................................................................................2011.00100100000000
....................................................................................................................................................................................................................................................................................................TGT-GTGTGT-A-------TAGTGGGCAC................................................................................................................................2011.00101000000000
...................................................................................................................................................................................TC--------------------------------------------------------------------------------------------------TGT---------TTGT-GTGTGT-A-------TAGTGGGC..................................................................................................................................2411.00101000000000
............................................................................................................................................................................GTT--TGTC--------------------------------------------------------------------------------------------------TGT---------TTGT-GTGTGT-A-------TAGT......................................................................................................................................2511.00100000010000
............................................................................................................................................................................................................................................................................................................GT-A-------TAGTGGGCACCG---------------AGTATCGGT---------------------------------------------------------------------G................................2511.00100010000000
...........................................................................................................................................................................................................................................................................................................TGT-A-------TAGTGGGCACCG---------------AGTATCGGT---------------------------------------------------------------------.................................2511.00101000000000
.........................................................................................................................................................................TTTGTT--TGTC--------------------------------------------------------------------------------------------------TGT---------TTGT-GTGTGT-..................................................................................................................................................2311.00100000010000
.........................................................................................................................................................................TTTGTT--TGTC--------------------------------------------------------------------------------------------------TGT---------TTGT-GTGT.....................................................................................................................................................2111.00101000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGTATAATTTAATGTCTCCT-AAGG......2611.00101000000000
..................................................................................................................................................................................................................................................................................................................................G---------------AGTATCGGT---------------------------------------------------------------------GCCGTATAATTTAATGT................2711.00100000010000
..........................................................................................................................................................................................................................................................................................................GTGT-A-------TAGTGGGCACCG---------------AGTATCGGT---------------------------------------------------------------------.................................2611.00101000000000
......................................................................................................................................................................TTTTTTGTT--TGTC--------------------------------------------------------------------------------------------------TGT---------TTGT-GTGTGT-..................................................................................................................................................2611.00100000010000
...................................................................................................................................................................................TC--------------------------------------------------------------------------------------------------TGT---------TTGT-GTGTGT-A-------TAGTGGGCAC................................................................................................................................2611.00101000000000
..................................................................................................................................................................................................................................................................................................................................G---------------AGTATCGGT---------------------------------------------------------------------GCCGTATAAT.......................2011.00100010000000
........................................................................................................................................................................................................................................................................................GT---------TTGT-GTGTGT-A-------TAGTGGG...................................................................................................................................2011.00101000000000
.....................................................................ACT-------------------------------------------------------------------------------------------TTTTTTTTTGTT--TGTC--------------------------------------------------------------------------------------------------TGT---------T.............................................................................................................................................................2311.00100100000000
..........................................................................................................................................................................TTGTT--TGTC--------------------------------------------------------------------------------------------------TGT---------TTGT-GTGTGT-A-------TAGT......................................................................................................................................2711.00100000010000
....................................................................................................................................................................TTTTTTTTGTT--TGTC--------------------------------------------------------------------------------------------------TGT---------TTGT-GC.......................................................................................................................................................2411.00100100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGTATAATTTAATGTCTCCT-AAGGAAT...2911.00100000010000
............................................................................................................................................................................................................................................................................................................GT-A-------TAGTGGGCACCG---------------AGTATCGGT---------------------------------------------------------------------.................................2411.00101000000000
.......................................................................................................................................................................TTTTTGTT--TGTC--------------------------------------------------------------------------------------------------TGT---------TTGT-GTGT.....................................................................................................................................................2311.00100000010000
........................................................................................................................................................................................................................................................................................GT---------TTGT-GTGTGT-A-------TAGTGGGCAC................................................................................................................................2311.00100100000000
......................................................................CT-------------------------------------------------------------------------------------------TTTTTTTTTGTT--TGTC--------------------------------------------------------------------------------------------------TGT---------TTGT-.........................................................................................................................................................2511.00100100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTAATGTCTCCT-AAGGAAT...2111.00101000000000
.................................................................................................................................................................................................................................................................................................................................CG---------------AGTATCGGT---------------------------------------------------------------------GCCGTATAATTTA....................2411.00101000000000
...................................................................................................................................................................................................................................................................................................TTGT-GTGTGT-A-------TAGTGGGC..................................................................................................................................1911.00100000010000
......................................................................................................................................................................TTTTTTGTT--TGTC--------------------------------------------------------------------------------------------------TGT---------TTGT-GTGT.....................................................................................................................................................2411.00100000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTTAATGTCTCCT-AAGGAATT--2511.00100000010000
...................................................G---------TATTACTGACT-------------------------------------------------------------------------------------------TTTTTTTTTGTT--................................................................................................................................................................................................................................................................................2411.00100100000000
........................................................................................................................................................................TTTTGTT--TGTC--------------------------------------------------------------------------------------------------TGT---------TTGT-.........................................................................................................................................................1820.50101000000000
.........................................................................................................................................................................TTTGTT--TGTC--------------------------------------------------------------------------------------------------TGT---------TTGT-GT.......................................................................................................................................................1920.50101000000000
.........................................................................................................................................................................TTTGTT--TGTC--------------------------------------------------------------------------------------------------TGT---------TTGT-GTGC.....................................................................................................................................................2170.14100100000000
droEre2
TG---------------------T---------------------------G---------TATTACTGACT-------------------------------------------------------------------------------------------TTTTTT--------------------------------------------------------------------------------------------------------------TGT---------TTGT-GTGTGT-A-------TAGTGGGTACCG---------------AGTATCGGT---------------------------------------------------------------------GCCGTATAATTTAATGTCTGCT-AAGGAATT--SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...............................................................................................................................................................................................................................................................................................................A-------TAGTGGGTACCG---------------AGTATCGGT---------------------------------------------------------------------.................................2212.0020001010
.................................................................................................................................................................................................................................................................................................................................CG---------------AGTATCGGT---------------------------------------------------------------------GCCGTATAAT.......................2112.0020001100
.....................................................................................................................................................................................................................................................................................................GT-GTGTGT-A-------TAGTGGGTA.................................................................................................................................1812.0020010100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTAATGTCTGCT-AAGGA.....2012.0020000110
........................................................................................................................................................................................................................................................................................................GTGTGT-A-------TAGTGGGTACC...............................................................................................................................1812.0020001010
........................................................................................................................................................................................................................................................................................GT---------TTGT-GTGTGT-A-------TAGTGGGTACC...............................................................................................................................2412.0020001100
.......................................................................................................................................................................TT--------------------------------------------------------------------------------------------------------------TGT---------TTGT-GTGTGT-A-------TAGTGGG...................................................................................................................................2311.0010000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTAATGTCTGCT-AAGGA.....1911.0011000000
.......................................................................T-------------------------------------------------------------------------------------------TTTTTT--------------------------------------------------------------------------------------------------------------TGT---------TTGT-GTGTGT-..................................................................................................................................................2011.0010000010
..........................................................................................................................................................................................................................................................................................................GTGT-A-------TAGTGGGTACCG---------------AGTATCGGT---------------------------------------------------------------------GCC..............................2911.0010100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................GTATAATTTAATGTCTGCT-AAGGA.....2411.0011000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTAATGTCTGCT-AAGGAAT...2211.0010000100
............................................................................................................................................................................................................................................................................................................GT-A-------TAGTGGGTACCG---------------AGT............................................................................................................1811.0011000000
TG---------------------T---------------------------G---------TATTACTGACT-------------------------------------------------------------------------------------------TTTT..........................................................................................................................................................................................................................................................................................1911.0011000000
.........................................................................................................................................................................................................................................................................................T---------TTGT-GTGTGT-A-------TAGTGGGTACCC---------------...............................................................................................................2411.0010001000
............................................................................................................................................................................................................................................................................................................GT-A-------TAGTGGGTACCG---------------AGTATCGGT---------------------------------------------------------------------.................................2411.0010000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTAATGTCTGCT-AAGG......1911.0011000000
........................................................................................................................................................................................................................................................................................GT---------TTGT-GTGTGT-A-------TAGTGGGT..................................................................................................................................2111.0010000010
....................................................................GACT-------------------------------------------------------------------------------------------TTTTTT--------------------------------------------------------------------------------------------------------------TGT---------TTGT-GTGT.....................................................................................................................................................2111.0010000010
.....................................................................................................................................................................................................................................................................................................GT-GTGTGT-A-------TAGTGGGTAC................................................................................................................................1911.0010000010
.....................................................................................................................................................................................................................................................................................................GT-GTGTGT-A-------TAGTGGGTACC...............................................................................................................................2011.0010100000
..........................................................................................................................................................................................................................................................................................................GTGT-A-------TAGTGGGTACCG---------------AGTATCGGT---------------------------------------------------------------------.................................2611.0010000100
....................................................................................................................................................................................................................................................................................................................................................................................................................................TATAATTTAATGTCTGCT-AAGGA.....2311.0011000000
.................................................................................................................................................................................................................................................................................................................................CG---------------AGTATCGGT---------------------------------------------------------------------GCCGTATAATTTAAT..................2611.0010001000
.................................................................ACTGACT-------------------------------------------------------------------------------------------TTTTTT--------------------------------------------------------------------------------------------------------------TGT---------TTGT-GTGT.....................................................................................................................................................2411.0010000010
......................................................................CT-------------------------------------------------------------------------------------------TTTTTT--------------------------------------------------------------------------------------------------------------TGT---------TTGT-GTGT.....................................................................................................................................................1911.0010000010
.......................................................................................................................................................................................................................................................................................TGT---------TTGT-GTGTGT-A-------TAGT......................................................................................................................................1811.0010001000
........................................................................................................................................................................................................................................................................................................................AGTGGGTACCG---------------AGTATCGGT---------------------------------------------------------------------.................................2011.0010001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTTAATGTCTGCT-AAGGA.....2211.0010001000

Generated: 06/08/2015 at 02:59 PM