ID:

dpe_650

 Coordinate:

scaffold_108:30145-30295 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-17.8 -17.7 -17.7

Flybase annnotation

CDS [Dper\GL19978-cds]; exon [dper_GLEANR_22278:1]; intron [Dper\GL19978-in]

No Repeatable elements found

mature
  1. scaffold_144:54975-54997 -
  2. scaffold_0:1071946-1071968 +
  3. scaffold_0:4375928-4375950 -
  4. scaffold_967:1234-1256 -
  5. dpe_650  scaffold_108:30172-30194 -
  6. scaffold_738:4689-4711 +
  7. scaffold_650:8132-8154 +
  8. scaffold_8409:884-906 +
  9. scaffold_6096:370-392 +
  10. scaffold_9438:227-249 +
star
  1. scaffold_144:55040-55066 -
  2. scaffold_0:1071877-1071903 +
  3. scaffold_0:4375993-4376019 -
  4. scaffold_381:2816-2842 +
  5. scaffold_84:47244-47270 -
  6. scaffold_213:28711-28737 -
  7. scaffold_258:25950-25976 +
  8. scaffold_967:1299-1325 -
  9. dpe_650  scaffold_108:30237-30263 -
  10. scaffold_738:4620-4646 +
  11. scaffold_650:8063-8089 +
  12. scaffold_640:8109-8135 +
  13. scaffold_8409:815-841 +
  14. scaffold_6096:301-327 +
  15. scaffold_9438:158-184 +
  16. scaffold_205:30664-30690 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GCCGTAGCTCGCAAGGGACCGGAGGACGCCCCAAAGGAGCGAGAGGTAGGGTGGGTGAAGGTCGTAGCCAGGCAACGGCCAAAGCCAAAGCAGCAGCAACGACCAAGACCGCCACGCAGCGATGCAATAGTCATCGCCGCCACCGGCACTGTCTCATATGCAGACATCCTAAGGAAGGTCAAGACAGAGCCAAGTCTTAAAAAGCTAGGGCAATCGGTGCAAGGGGTGCGACGCACAGCAAAAGGAGAGNN
**********************************************************************************..........(((.....(((..((...(((..((.((((((.......)))))).))....))).))))).....))).............***************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 V057
head
.......................................................................................................................................................TCTCATATGCAGACATCCTAAGG............................................................................. 23 0 10 1.00 10 10 0
...............................................................................................................................................................................................AAGTCTTAAAAAGCTAGGGCAATCGG.................................. 26 0 12 0.50 6 6 0
..................................................................................AGCCAAAGCAGCAGCAACGACCAAGAC.............................................................................................................................................. 27 0 16 0.38 6 6 0
..................................................................................AGCCAAAGCAGCAGCAACGACCAAG................................................................................................................................................ 25 0 16 0.31 5 5 0
..................................................................................AGCCAAAGCAGCAGCAACGACC................................................................................................................................................... 22 0 16 0.31 5 5 0
.......................................................................................................................................................TCTCATATGCAGACATCCTAAGGAAGG......................................................................... 27 0 10 0.30 3 3 0
.............................CCCAAAGGAGCGAGAGGTAGGG........................................................................................................................................................................................................ 22 0 4 0.25 1 1 0
..................................................................................AGCCAAAGCAGCAGCAACGAC.................................................................................................................................................... 21 0 16 0.25 4 4 0
..................................................................................AGCCAAAGCAGCAGCAACGACCAAGA............................................................................................................................................... 26 0 16 0.19 3 3 0
...............................................................................................................................................................................................AAGTCTTAAAAAGCTAGGGCAAT..................................... 23 0 12 0.17 2 2 0
....TAGCTCGCAAGGGACCGGAGGACGCCC............................................................................................................................................................................................................................ 27 0 13 0.15 2 2 0
.............................................................................................................................................................................................................TAGGGCAATCGGTGCAAGGGGTG....................... 23 0 13 0.15 2 2 0
.....................................................................................................................................TCGCCGCCACCGGCACTGTCTCATAA............................................................................................ 26 1 7 0.14 1 1 0
..................................................................................AGCCAAAGCAGCAGCAACGACCAA................................................................................................................................................. 24 0 16 0.13 2 2 0
............................................................................................................................................................TATGCAGACATCCTAAGGAAGGTCAAGA................................................................... 28 0 9 0.11 1 1 0
.......................................................................................................................................................TCTCATATGCAGACATCCTAAGGA............................................................................ 24 0 10 0.10 1 1 0
.......................................................................................................................................................TCTCATATGCAGACATCCTAAGGAAG.......................................................................... 26 0 10 0.10 1 1 0
............................................................................................................................................................TATGCAGACATCCTAAGGAA........................................................................... 20 0 10 0.10 1 1 0
.......................................................................................................................................................TCTCATATGCAGACATCCTAAAGA............................................................................ 24 1 10 0.10 1 1 0
.......................................................................................................................................................TCTCATATGCAGACATCCTAAG.............................................................................. 22 0 10 0.10 1 1 0
........................................................................................................................................................CTCATATGCAGACATCCTAAGG............................................................................. 22 0 10 0.10 1 1 0
.......................................................................................................................................................TCTCATATGCAGACATCCTAA............................................................................... 21 0 10 0.10 1 1 0
..............................................................................................................................................................TGCAGACATCCTAAGGAAGGTCAAG.................................................................... 25 0 10 0.10 1 1 0
...............................................................................................................................................................................................GAGTCTTAAAAAGCTAGGGCAATCGG.................................. 26 1 12 0.08 1 1 0
........................................................................................................................................................................................CAGAGCCAAGTCTTAAAAAGCTAGGG......................................... 26 0 12 0.08 1 1 0
..........................................................................................................................TGCAATAGTCATCGCCGCCCT............................................................................................................ 21 2 12 0.08 1 1 0
..................................................................................................................................................................................................TCTTAAAAAGCTAGGGCAATCGGTG................................ 25 0 12 0.08 1 1 0
..........................................................................................................................TGCAATAGTCATCGCCGCC.............................................................................................................. 19 0 12 0.08 1 1 0
..........................................................................................................................TGCAATAGTCATCGCCGCCACC........................................................................................................... 22 0 12 0.08 1 1 0
...........................................................................................................................................................................AGGAATGTCAAGACAGATCC............................................................ 20 2 12 0.08 1 0 1
..............................................................................................................................................................................................GAAGTCTTAAAAAGCTAGGGCAATCGG.................................. 27 1 12 0.08 1 1 0
...............................................................................................................................................................................................AAGTCTTAAAAAGCTAGGGC........................................ 20 0 12 0.08 1 1 0
...............................................................................................................................................................................................AAGTCTTAAAAAGCTAGGGCAATCG................................... 25 0 12 0.08 1 1 0
.............................................................................................................................................................................................................TAGGGCAATCGGTGCAAGG........................... 19 0 13 0.08 1 1 0
...................................................TGGGTGAAGGTCGTAGCCAGG................................................................................................................................................................................... 21 0 13 0.08 1 1 0
....TAGCTCGCAAGGGACCGGAGGACGCCCC........................................................................................................................................................................................................................... 28 0 13 0.08 1 1 0
..................................................................................................................................................................................................................CAATCGGTGCAAGGGGTGCGACGCAC............... 26 0 14 0.07 1 1 0
.........................................................................................................................................................................................................................TGCAAGGGGTGCGACGCACAGCAA.......... 24 0 14 0.07 1 1 0
...........................................................................................................................................................................................................................CAAGGGGTGCGACGCACAGC............ 20 0 14 0.07 1 1 0
..................................................................................................................................................................................................................................TGCGACGCACAGCAAAAGGAGAG.. 23 0 14 0.07 1 1 0
............................................................................................................................................................................................................................AAGGGGTGCGACGCACAGCAAAAGG...... 25 0 14 0.07 1 1 0
................................................................................................CAACGACCAAGACCGCCACGCAGCGA................................................................................................................................. 26 0 15 0.07 1 1 0
................................................................................................CAACGACCAAGACCGCCACGC...................................................................................................................................... 21 0 15 0.07 1 1 0
..................................................................................AGCCAAAGAAGCAGCAACGACCAAGA............................................................................................................................................... 26 1 16 0.06 1 1 0
..................................................................................AGCCAAAGAAGCAGCAACGACCAAGT............................................................................................................................................... 26 2 16 0.06 1 1 0
...................................................................................GCCAAAGCAGCAGCAACGACC................................................................................................................................................... 21 0 16 0.06 1 1 0
..................................................................................AGCCAAAGCAGCAGCAACGA..................................................................................................................................................... 20 0 16 0.06 1 1 0
..................................................................................AGCCAAAGCAGCAGCAACG...................................................................................................................................................... 19 0 16 0.06 1 1 0
..................................................................................AGCCAAAGAAGCAGCAACGACC................................................................................................................................................... 22 1 16 0.06 1 1 0
..................................................................................AGCCAAAGCAGCAGCAACGACCA.................................................................................................................................................. 23 0 16 0.06 1 1 0
..................................................................................AGCCAAAGGAGCAGCAACGACCAAG................................................................................................................................................ 25 1 16 0.06 1 1 0
..............................................................................................AGCAGCGACCAAGACCGC........................................................................................................................................... 18 1 17 0.06 1 1 0
...............GGACCGGAGGACGCGCCAGC........................................................................................................................................................................................................................ 20 3 20 0.05 1 0 1

Anti-sense strand reads

CGGCATCGAGCGTTCCCTGGCCTCCTGCGGGGTTTCCTCGCTCTCCATCCCACCCACTTCCAGCATCGGTCCGTTGCCGGTTTCGGTTTCGTCGTCGTTGCTGGTTCTGGCGGTGCGTCGCTACGTTATCAGTAGCGGCGGTGGCCGTGACAGAGTATACGTCTGTAGGATTCCTTCCAGTTCTGTCTCGGTTCAGAATTTTTCGATCCCGTTAGCCACGTTCCCCACGCTGCGTGTCGTTTTCCTCTCNN
*****************************************************************************..........(((.....(((..((...(((..((.((((((.......)))))).))....))).))))).....))).............********************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 M021
embryo
 V042
embryo
...............................................................................................................................................................................TCCAGTTCTGTCTCGGTTCAGAATTT.................................................. 26 0 12 7.25 87 47 40 0
........................................................................................................................................GGCGGTGGCCGTGACAGAGTATACG.......................................................................................... 25 0 7 3.00 21 21 0 0
...........................................................................................................................................GGTGGCCGTGACAGAGTATACG.......................................................................................... 22 0 7 2.29 16 15 0 1
................................................................................................................................................................................CCAGTTCTGTCTCGGTTCAGAATTT.................................................. 25 0 12 1.58 19 17 2 0
....................................................................GTCCGTTGCCGGTTTCGGTTTCGT............................................................................................................................................................... 24 0 2 1.00 2 2 0 0
........................................................................GTTGCCGGTTTCGGTTTCGT............................................................................................................................................................... 20 0 2 1.00 2 1 0 1
..........................................................................................................................................CGGTGGCCGTGACAGAGTATACG.......................................................................................... 23 0 7 1.00 7 7 0 0
..........................................................................................................CTGGCGGTGCGTCGCTACGTTATCAGT...................................................................................................................... 27 0 13 0.62 8 5 0 3
........................................................................................................................................................................................................................CACGTTCCCCACGCTGCGTGTCGTTT......... 26 0 14 0.57 8 8 0 0
....................................................................GTCCGTTGCCGGTTTAGGTTTCGT............................................................................................................................................................... 24 1 2 0.50 1 1 0 0
............................................................................................................................................GTGGCCGTGACAGAGTATACG.......................................................................................... 21 0 7 0.43 3 3 0 0
...............................................................................................................................................................................TCCAGTTCTGTCTCGGTTCAGAATT................................................... 25 0 12 0.42 5 5 0 0
.................................................................................................................................................................................CAGTTCTGTCTCGGTTCAGAATTT.................................................. 24 0 12 0.33 4 4 0 0
.......................................................................................................................................CGGCGGTGGCCGTGACAGAGTATACG.......................................................................................... 26 0 7 0.29 2 2 0 0
..................................................................................................................................................................................................................GTTAGCCACGTTCCCCACGCTGCGT................ 25 0 14 0.29 4 4 0 0
.........................................................................................................................................GCGGTGGCCGTGACAGAGTATACG.......................................................................................... 24 0 7 0.29 2 2 0 0
........................................................................................................................................GGCGGTGGCCGTGACAGAGTATAC........................................................................................... 24 0 7 0.29 2 2 0 0
.....................................................................................................................................AGCGGCGGTGGCCGTGACAGAGTATACG.......................................................................................... 28 0 7 0.29 2 2 0 0
..........................................................................................................................................................................................................................CGTTCCCCACGCTGCGTGTCGTTT......... 24 0 14 0.29 4 4 0 0
................................................................................................................................................................................CCAGTTCTGTCTCGGTTCAGAATT................................................... 24 0 12 0.25 3 3 0 0
........................CTGCGGGGTTTCCTCGCTCTCCAT........................................................................................................................................................................................................... 24 0 4 0.25 1 1 0 0
..............................GGTTTCCTCGCTCTCCATCCC........................................................................................................................................................................................................ 21 0 4 0.25 1 1 0 0
...............................................................................................................GGTGCGTCGCTACGTTATCAGT...................................................................................................................... 22 0 13 0.23 3 3 0 0
......................................................................................................................................................................................CTGTCTCGGTTCAGAATTTTTCGAT............................................ 25 0 13 0.23 3 1 2 0
...........................................................................................................................................................................................................................GTTCCCCACGCTGCGTGTCGTTT......... 23 0 14 0.21 3 3 0 0
......................................................................................................................................................................................................................GCCACGTTCCCCACGCTGCGTGT.............. 23 0 14 0.21 3 0 0 3
.......................................................................................TTCGTCGTCGTTGCTGGTTCT............................................................................................................................................... 21 0 16 0.19 3 0 3 0
...............................................................................................................................................................................TCCAGTCCTGTCTCGGTTCAGAATTT.................................................. 26 1 12 0.17 2 0 2 0
...............................................................................................................................................................................TCCAGTTCTGTCTCGGTTCAGAAT.................................................... 24 0 12 0.17 2 0 2 0
......................................CGCTCTCCATCCCACCCACTTCCAGCAT......................................................................................................................................................................................... 28 0 6 0.17 1 1 0 0
.........................................................................................................TCTGGCGGTGCGTCGCTACGTTATCAGT...................................................................................................................... 28 0 13 0.15 2 2 0 0
.....................................................................................................................................................................................TCTGTCTCGGTTCAGAATTTTTCCAT............................................ 26 1 13 0.15 2 0 2 0
...........................................................................................................TGGCGGTGCGTCGCTACGTTATCAGT...................................................................................................................... 26 0 13 0.15 2 0 0 2
......................................................................................................................................GCGGCGGTGGCCGTGACAGAGTATACG.......................................................................................... 27 0 7 0.14 1 1 0 0
.......................................................................................................................................................................................................................CCACGTTCCCCACGCTGCGTGTCGTTT......... 27 0 14 0.14 2 2 0 0
.....................................................................................................................................CGAGGCGGTGGCCGTGACAGAGTATACG.......................................................................................... 28 2 7 0.14 1 1 0 0
...........................................................................................................................................GGTGGCCGTGACAGAGTATAC........................................................................................... 21 0 7 0.14 1 1 0 0
.......................................................................................................................................TGGCGGTGGCCGTGACAGAGTATACG.......................................................................................... 26 1 7 0.14 1 1 0 0
.............................................................................................................................................................................................................................TCCCCACGCTGCGTGTCGTTTTCCT..... 25 0 14 0.14 2 2 0 0
............................................................................................................................................GTGGCCGTGACAGAGTATACGTCTGT..................................................................................... 26 0 7 0.14 1 1 0 0
........................................................................................................................................TGCGGTGGCCGTGACAGAGTATACG.......................................................................................... 25 1 7 0.14 1 0 0 1
.........................................................................................................................................................................................................................ACGTTCCCCACGCTGCGTGTCGTTT......... 25 0 14 0.14 2 1 0 1
........................................................................................................................................................................................................................AACGTTCCCCACGCTGCGTGTCGTT.......... 25 1 14 0.14 2 2 0 0
.......................................................................................................................................................................................................................CCACGTTCCCCACGCTGCGTGTCGT........... 25 0 14 0.14 2 2 0 0
.............................................................................................................................................TGGCCGTGACAGAGTATACG.......................................................................................... 20 0 7 0.14 1 1 0 0
................................................................................................................................................................................................................................CCACGCTGCGTGTCGTTTTCCT..... 22 0 14 0.14 2 2 0 0
.............................................................................................................................................................................................................................TCCCCACGCTGCGTGTCGTTTTCCTCT... 27 0 14 0.14 2 2 0 0
........................................................................................................................................GGCGGTGGCCGTGACAGAGTATACT.......................................................................................... 25 1 7 0.14 1 1 0 0
.............................................................................................................................................TGGCCGTGACAGAGTATACGTCTGT..................................................................................... 25 0 7 0.14 1 1 0 0
................................................................................................................................................................................................................................CCACGCTGCGTGTCGTTTTCCTCT... 24 0 14 0.14 2 1 1 0
....................................................................................................................................................................................................................TAGCCACGTTCCCCACGCTGCGTGT.............. 25 0 14 0.14 2 2 0 0
....................................................................................................................................................................................................................TAGCCACGTTCCCCACGCTGCGTGTCGT........... 28 0 14 0.14 2 2 0 0
.............................................................................CGGTTTCGGTTTCGTCGTCGTTGCT..................................................................................................................................................... 25 0 15 0.13 2 2 0 0
..............................................................................GGTTTCGGTTTCGTCGTCGTTGCT..................................................................................................................................................... 24 0 15 0.13 2 0 2 0
.................................................................................TTCGGTTTCGTCGTCGTTGCTGGTT................................................................................................................................................. 25 0 16 0.13 2 0 2 0
....................................................................................GGTTTCGTCGTCGTTGCTGGTTCT............................................................................................................................................... 24 0 16 0.13 2 2 0 0
......................................................................................................................................................CAGAGTATACGTCTGTAGGATTCCT............................................................................ 25 0 10 0.10 1 1 0 0
.................................................................................................................................................CGTGACAGAGTATACGTCTGTAGGAT................................................................................ 26 0 10 0.10 1 1 0 0
.............TCCCTGGCCTCCTGCGGGGTTTCCT..................................................................................................................................................................................................................... 25 0 11 0.09 1 1 0 0
...............................................................................................................................................................................TCCAGTTCTGTCTCGGTGCAGAATTT.................................................. 26 1 12 0.08 1 1 0 0
...............................................................................................................................................................................TCCAGTTCTGTCTCGGTCCAGAATTT.................................................. 26 1 12 0.08 1 1 0 0
...............................................................................................................................................................................TCCAGTTCTGTCTCGGTACAGAATTT.................................................. 26 1 12 0.08 1 1 0 0
...............CCTGGCCTCCTGCGGGGTTTCCT..................................................................................................................................................................................................................... 23 0 12 0.08 1 1 0 0
..............................................................................................................................................................................TTCCAGTTCTGTCTCGGTTCAGAATTT.................................................. 27 0 12 0.08 1 1 0 0
...............................................................................................................................................................................TCCAGTTCTGTCTCGGTTCAGAATTTT................................................. 27 0 12 0.08 1 0 1 0
...............................................................................................................................................................................TCCCGTTCTGTCTCGGTTCAGAATTT.................................................. 26 1 12 0.08 1 0 1 0
................................................................................................................................................................................CCAGTTCTGTCTAGGTGCAGAATTT.................................................. 25 2 12 0.08 1 1 0 0
..................................................................................................................................................................................AGTTCTGTCTCGGTTCAGAATTT.................................................. 23 0 12 0.08 1 1 0 0
................................................................................................................................................................................CCAGTTCTGTCTCGTTCCAGAATTT.................................................. 25 2 12 0.08 1 1 0 0
...............................................................................................................................................................................CCCAGTTCTGTCTCGGTTCAGAATTT.................................................. 26 1 12 0.08 1 0 1 0
............................................................................................................................................................................GGTTCCAGTTCTGTCTCGGTTCAGAATTT.................................................. 29 2 12 0.08 1 1 0 0
.................................................................................................................................................................................AAGTTCTGTCTCGGTTCAGAATTT.................................................. 24 1 12 0.08 1 1 0 0
..........................................................................................................ATGGCGGTGCGTCGCTACGTTATCAGT...................................................................................................................... 27 1 13 0.08 1 1 0 0
............................................................................................................GGCGGTGCGTCGCTACGTTATCAGT...................................................................................................................... 25 0 13 0.08 1 0 0 1
.......GAGCGTTCCCTGGCCTCCTGCGGGGT.......................................................................................................................................................................................................................... 26 0 13 0.08 1 1 0 0
............................................................................................................GGCGGTGCGTCGCTACATTATCAGT...................................................................................................................... 25 1 13 0.08 1 1 0 0
............................................................................................................GGCGGTGCGTCGCTACGTTATCAG....................................................................................................................... 24 0 13 0.08 1 1 0 0
..............................................................................................................CGGTGCGTCGCTACGTTATCAGTAG.................................................................................................................... 25 0 13 0.08 1 1 0 0
..............................................................................................................................................................................TTCCACTTCTGTCTCGGTACAGAATTT.................................................. 27 2 13 0.08 1 1 0 0
............................................................................................................GGCGGTGCGTCGCTACGTTATCAGTT..................................................................................................................... 26 1 13 0.08 1 1 0 0
............................................................................................................GGCGGTGCGTCGCTACGTTATCAGTA..................................................................................................................... 26 0 13 0.08 1 1 0 0
......CGAGCGTTCCCTGGCCTCCTGCGGGGT.......................................................................................................................................................................................................................... 27 0 13 0.08 1 1 0 0
...........GTTCCCTGGCCTCCTGCGGGGT.......................................................................................................................................................................................................................... 22 0 13 0.08 1 1 0 0
.....................................................................................................................................................................................TCTGTCTCGGTTCAGAATTTT................................................. 21 0 13 0.08 1 0 1 0
......................................................................................................................................................................................CTGTCTCGGTTCAGAATTT.................................................. 19 0 13 0.08 1 0 1 0
.......................................................................................................................................................................................TGTCTCGGTTCAGAATTTTTCGAT............................................ 24 0 13 0.08 1 1 0 0
.............................................................................................................GCGGTGCGTCGCTACGTTATCAGT...................................................................................................................... 24 0 13 0.08 1 1 0 0
.............................................................................................................................................................................................................................TCCCCACGCTGCGTGTCGTTTT........ 22 0 14 0.07 1 1 0 0
........................................................................................................................................................................................................................AACGTTCCCCACGCTGCGTGTCGTTT......... 26 1 14 0.07 1 1 0 0
..............................................................................................................................................................................................................................CCCCACGCTGCGTGTCGTTTTCCTCTC.. 27 0 14 0.07 1 1 0 0
...........................................................................................................................................................................................................................GTTCCCCACGCTGCGTGTCGTTTT........ 24 0 14 0.07 1 1 0 0
.................................................................................................................................................................................................................................CACGCTGCGTGTCGGTTTCCTCT... 23 1 14 0.07 1 1 0 0
.....................................................................................................................................................................................................................AGCCACGTTCCCCACGCTGCGTGTCGT........... 27 0 14 0.07 1 1 0 0
..................................................................................................................................................................................................................................ACGCTGCGTGTCGTTTTCCTCT... 22 0 14 0.07 1 1 0 0
........................................................................................................................................................................................................................CACGTTCCCCACGCTGCGTGTCGT........... 24 0 14 0.07 1 1 0 0
................................................................................................................................................................................................................CCGTTAGCCACGTTCCCCACGCTGCGT................ 27 0 14 0.07 1 1 0 0
..................................................................................................................................................................................................................................ACGCTGCGTGTCGATTTCCTCT... 22 1 14 0.07 1 1 0 0
........................................................................................................................................................................................................................CACGTTCCCCACGCTGCGTGTCGTTTT........ 27 0 14 0.07 1 1 0 0
....................................................................................................................................................................................................................TAGCCACGTTCCCCACGCTGCGT................ 23 0 14 0.07 1 1 0 0
.........................................................................................................................................................................................................................CAGTTCCCCACGCTGCGTGT.............. 20 2 14 0.07 1 1 0 0
.................................................................................................................................................................................................................TGTTAGCCACGTTCCCCACGCTGCGT................ 26 1 14 0.07 1 1 0 0
...............................................................................................................................................................................................................................CCCACGCTGCGTGTCGTTTTCCTCT... 25 0 14 0.07 1 1 0 0
...........................................................................................................................................................................................................................GTTCCCCACGCTGCGTGTCGTT.......... 22 0 14 0.07 1 1 0 0
..........................................................................................................................................................................................................................CGTTCCCCACGCTGCGTGTCGT........... 22 0 14 0.07 1 1 0 0
.......................................................................................................................................................................................................................CCACGTTCCCCACGCTCCGTGTCGTTTT........ 28 1 14 0.07 1 1 0 0
................................................................................................................................................................................................................ACGTTAGCCACGTTCCCCACGCTGCGT................ 27 1 14 0.07 1 1 0 0
........................................................................................................................................................................................................................AACGTTCCCCACGCTGCGTGTCGT........... 24 1 14 0.07 1 1 0 0
..................................................................................................................................................................................................................................ACGCTGCGTGTCGTTTTCCTC.... 21 0 14 0.07 1 1 0 0
..............................................................................................................................................................................................................................CCCCACGCTGCGTGTCGTTTTCCT..... 24 0 14 0.07 1 1 0 0
...............................................................................................................................................................................................................................CCCACGCTGCGTGTCGTTTTCCT..... 23 0 14 0.07 1 1 0 0
...................................................................................................................................................................................................................TTAGCCACGTTCCCCACGCTGCGTGT.............. 26 0 14 0.07 1 1 0 0
........................................................................................................................................................................................................................CACGTTCCCCACGCTGCGTGCCGTTT......... 26 1 14 0.07 1 1 0 0
................................................................................................................................................................................................................................CCACGCTGCCTGTCGTTTTCCT..... 22 1 14 0.07 1 1 0 0
..GCATCGAGCGTTCCCTGGCCT.................................................................................................................................................................................................................................... 21 0 14 0.07 1 1 0 0
.......................................................................................................................................................................................................................CCACGTTCCCCACGCTGCGTGTCGTT.......... 26 0 14 0.07 1 1 0 0
.........................................................................................................................................................................................................................ACGTTCCCCACGCTGCGTGTCGT........... 23 0 14 0.07 1 1 0 0
..........................................................................................................................................................................................................................CGTTCCCCACGCTGCGTGTCGTTTT........ 25 0 14 0.07 1 1 0 0
..............................................................................................................................................................................................................................CCCCACGCTGCGTGTCGTTTTCCTCT... 26 0 14 0.07 1 1 0 0
CGGCATCGAGCGTTCCCTGGCCT.................................................................................................................................................................................................................................... 23 0 14 0.07 1 1 0 0
........................................................................................................................................................................................................................AACGTTCCCCACGCTGGGTGTCGTT.......... 25 2 14 0.07 1 1 0 0
...........................................................................................................TGGCGGTGCGTCGCTACGT............................................................................................................................. 19 0 15 0.07 1 1 0 0
.............................................................................CGGTTTCGGTTTCGTCGTCGT......................................................................................................................................................... 21 0 15 0.07 1 1 0 0
..........................................................................................................CTGGCGGTGCGTCGCTACGT............................................................................................................................. 20 0 15 0.07 1 1 0 0
..............................................................................GGATTCGGTTTCGTCGTCGTTGCT..................................................................................................................................................... 24 1 15 0.07 1 1 0 0
..................................................................................................TGCTGGTTCTGGCGGTGCGTCGCTACGT............................................................................................................................. 28 0 15 0.07 1 1 0 0
......................................................................................................GGTTCTGGCGGTGCGTCGCTACGTT............................................................................................................................ 25 0 15 0.07 1 1 0 0
.........................................................................................CGTCGTCGTTGCTGGTTCTG.............................................................................................................................................. 20 0 16 0.06 1 1 0 0
..........................................................................................GTCGTCGTTGCTGGTTCT............................................................................................................................................... 18 0 16 0.06 1 1 0 0
....................................................................................GGTTTCGTCGTCGTTGCT..................................................................................................................................................... 18 0 16 0.06 1 0 0 1
...............................................................................GTTTCGGTTTCGTCGTCGTTGCTGGT.................................................................................................................................................. 26 0 16 0.06 1 1 0 0
...............................................................................GTTTCGGTTTCGTCGTCG.......................................................................................................................................................... 18 0 17 0.06 1 1 0 0
............................................................................AAAGTTTCGGTTTCGTCGTCGTT........................................................................................................................................................ 23 3 19 0.05 1 1 0 0
.................................................................................................................................................CGTGACAGAAGATAGGTCTG...................................................................................... 20 3 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_108:30095-30345 - dpe_650 G-----CCGTAGCTCGCAAGGGACCGGAGGACGCCCCAAAGGAGCGAGAG-------GTAGGGTGGGTGAAGGTCGTAGC----CAGGCAACGGCCAAAGCCAAAGCAGCAGCAACGACCAAGACCGCCACGCAGCGATGCAATAGTCATCGCCGCCACCGGCACTGTCTCATATGCAGACATCCTAAGGAAGGTCAAGACAGAGCCAAGTCTTAAAAAGCTAGGGCAATCGGTGCAAGGGGTGCGACGCACAGCAAAAGGAGAGNN
dp5 Unknown_group_106:22274-22522 + G-----CCGTAGCTCGCAAGGGACCGGAGGACGCCCCAAAGGAGCAAGAG-------GTAGGGTGGGTAAAGGTCGTAGC----CAGGCAAAGGCCAAAGCCAAAGCAGCAGCAACGACCAAGACCGCCACGCAGCGATGCAATAGTCATCGCCGCCACCGGCACTGTCTCTTATGCAGACATCCTAAGGAAGGTCAAGACAGAGCCAAGTCTTAAAAAGCTAGGGCAATCGGTGCAAGGGGTGCGACGCACAGCAAAAGGAGAG--
droFic1 scf7180000454072:3416514-3416756 - G-----TCTAGGCCTTCCC-----GGGCAGACGAGCCTACG---GGAGAG-------GAAAAGTGGAAGAAGGTGGAAAGGAGGAAGGCAAAAGCCAAAGCCCCTAAACCCGCCAGAACCAAACCCGC-TAAGCGGGACGCGATTGTGGTGAAGGGGACAGAAAACTCCTCATACGCTGACATTCTGCGCTCGGTCAAAAGTGAACCATCGCTAAAAGGCCTAGCGCAACACGTTAGAGGAATCCGAAAGACGGCGAAAGGAGA---
droRho1 scf7180000776937:2704-2941 - A-----TGCTGGGAAAGATAGCACC--AGCAAGCCCCAAAAACCTGGGAAGAAGCCAGAGGAATGGCAACAGGTGAAGCGGAAGGAAAGGAAGCCCAGGA-------------------TGCGACCGCCTCGTAATGATGCGATAGTGATCGCAACCTCCACTGGAGGGTCCTATGCGGATATCCTTAAAAAGGTTAAGGCTGAACCGCAGCTGAATGAGCTAGGACAGGCCGTACAGGCTGTCAGGCGCACAGCTAAGGGGGA---
droBia1 scf7180000302262:132194-132426 + GGGGGAAATAGGGACCGAGAGCACC--AGTAAGCCCCAAAAACCC---------CCACAGGAGTGGAAAAAAGTAGAACCGAAGGCGAGGAAGCCCAAGG-------------------TACGTCCGCCACGAAATGACGCGATAGTTATCGCAACATCTACTGG-GGGTCCTACGCGGACATCCTTAAAAAGGTAAAGGCAGATCCACAGCTGGAAGACCTAGGTCAAGCTGTACAGGCCGTCAGGCGAACAGCAAAGGGGGA---
droTak1 scf7180000414830:307-544 - A-----CGCTGGGACAGAGAGCACC--AGCAAGCCCAAAAAACCTGGGAAGAAGCCTGAGGAATGGCAACAGGTTAGACAGAAGATAAGGAAGCCAAGGA-------------------TGCGACCGCCTCGCAATGACGCGATAGTGATCGCCACCTCCTTTGGAGGGTCCTATGCGGACATCCTTAAAAAGGTTAAGGCTGAACCGCAGCTGAAAGAGCTAGGACAAGCCGTACAGGCTGTCAGGCGCACAGCTAAGGGGGA---
droEug1 scf7180000405591:11583-11818 + G-----CTATG--GCAAAGAGCACC--AGCAATCCCCAAAAACCTGAGATGAAACCAGGAGAGTGGAAACAGGTGAAACAGAAGACACGGAAGCGCAAGG-------------------TGCGACCGCCACGGATTGATGCGATAGTCATCGCAACCTCCACGGGTGGGTCCTATGCAGATATCCTGAAAACAGTTAAGACAGAGCCTCAACTGAAGGAGGTAGGACAAGCAGTACATGCTGTCAGGCGCACAGCTAAAGGGGA---

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
G-----CCGTAGCTCGCAAGGGACCGGAGGACGCCCCAAAGGAGCGAGAG-------GTAGGGTGGGTGAAGGTCGTAGC----CAGGCAACGGCCAAAGCCAAAGCAGCAGCAACGACCAAGACCGCCACGCAGCGATGCAATAGTCATCGCCGCCACCGGCACTGTCTCATATGCAGACATCCTAAGGAAGGTCAAGACAGAGCCAAGTCTTAAAAAGCTAGGGCAATCGGTGCAAGGGGTGCGACGCACAGCAAAAGGAGAGNNSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......................................................................................................................................................................TCTCATATGCAGACATCCTAAGG.............................................................................23101.00100100000
...............................................................................................................................................................................................................AAGTCTTAAAAAGCTAGGGCAATCGG..................................26120.506060000
..................................................................................................AGCCAAAGCAGCAGCAACGACCAAGAC..............................................................................................................................................27160.386060000
..................................................................................................AGCCAAAGCAGCAGCAACGACCAAG................................................................................................................................................25160.315050000
..................................................................................................AGCCAAAGCAGCAGCAACGACC...................................................................................................................................................22160.315050000
.......................................................................................................................................................................TCTCATATGCAGACATCCTAAGGAAGG.........................................................................27100.303030000
..................................CCCAAAGGAGCGAGAG-------GTAGGG............................................................................................................................................................................................................2240.251010000
..................................................................................................AGCCAAAGCAGCAGCAACGAC....................................................................................................................................................21160.254040000
..................................................................................................AGCCAAAGCAGCAGCAACGACCAAGA...............................................................................................................................................26160.193030000
...............................................................................................................................................................................................................AAGTCTTAAAAAGCTAGGGCAAT.....................................23120.172020000
.........TAGCTCGCAAGGGACCGGAGGACGCCC.......................................................................................................................................................................................................................................27130.152020000
.............................................................................................................................................................................................................................TAGGGCAATCGGTGCAAGGGGTG.......................23130.152020000
.....................................................................................................................................................TCGCCGCCACCGGCACTGTCTCATAA............................................................................................2670.141010000
..................................................................................................AGCCAAAGCAGCAGCAACGACCAA.................................................................................................................................................24160.132020000
............................................................................................................................................................................TATGCAGACATCCTAAGGAAGGTCAAGA...................................................................2890.111010000
.......................................................................................................................................................................TCTCATATGCAGACATCCTAAGGA............................................................................24100.101010000
.......................................................................................................................................................................TCTCATATGCAGACATCCTAAGGAAG..........................................................................26100.101010000
............................................................................................................................................................................TATGCAGACATCCTAAGGAA...........................................................................20100.101010000
.......................................................................................................................................................................TCTCATATGCAGACATCCTAAG..............................................................................22100.101010000
........................................................................................................................................................................CTCATATGCAGACATCCTAAGG.............................................................................22100.101010000
.......................................................................................................................................................................TCTCATATGCAGACATCCTAA...............................................................................21100.101010000
..............................................................................................................................................................................TGCAGACATCCTAAGGAAGGTCAAG....................................................................25100.101010000
........................................................................................................................................................................................................CAGAGCCAAGTCTTAAAAAGCTAGGG.........................................26120.081010000
..........................................................................................................................................TGCAATAGTCATCGCCGCCCT............................................................................................................21120.081010000
..................................................................................................................................................................................................................TCTTAAAAAGCTAGGGCAATCGGTG................................25120.081010000
..........................................................................................................................................TGCAATAGTCATCGCCGCC..............................................................................................................19120.081010000
..........................................................................................................................................TGCAATAGTCATCGCCGCCACC...........................................................................................................22120.081010000
...............................................................................................................................................................................................................AAGTCTTAAAAAGCTAGGGC........................................20120.081010000
...............................................................................................................................................................................................................AAGTCTTAAAAAGCTAGGGCAATCG...................................25120.081010000
.............................................................................................................................................................................................................................TAGGGCAATCGGTGCAAGG...........................19130.081010000
...............................................................TGGGTGAAGGTCGTAGC----CAGG...................................................................................................................................................................................21130.081010000
.........TAGCTCGCAAGGGACCGGAGGACGCCCC......................................................................................................................................................................................................................................28130.081010000
..................................................................................................................................................................................................................................CAATCGGTGCAAGGGGTGCGACGCAC...............26140.071010000
.........................................................................................................................................................................................................................................TGCAAGGGGTGCGACGCACAGCAA..........24140.071010000
...........................................................................................................................................................................................................................................CAAGGGGTGCGACGCACAGC............20140.071010000
..................................................................................................................................................................................................................................................TGCGACGCACAGCAAAAGGAGAG..23140.071010000
............................................................................................................................................................................................................................................AAGGGGTGCGACGCACAGCAAAAGG......25140.071010000
................................................................................................................CAACGACCAAGACCGCCACGCAGCGA.................................................................................................................................26150.071010000
................................................................................................................CAACGACCAAGACCGCCACGC......................................................................................................................................21150.071010000
...................................................................................................GCCAAAGCAGCAGCAACGACC...................................................................................................................................................21160.061010000
..................................................................................................AGCCAAAGCAGCAGCAACGA.....................................................................................................................................................20160.061010000
..................................................................................................AGCCAAAGCAGCAGCAACG......................................................................................................................................................19160.061010000
..................................................................................................AGCCAAAGCAGCAGCAACGACCA..................................................................................................................................................23160.061010000
dp5
G-----CCGTAGCTCGCAAGGGACCGGAGGACGCCCCAAAGGAGCAAGAG-------GTAGGGTGGGTAAAGGTCGTAGC----CAGGCAAAGGCCAAAGCCAAAGCAGCAGCAACGACCAAGACCGCCACGCAGCGATGCAATAGTCATCGCCGCCACCGGCACTGTCTCTTATGCAGACATCCTAAGGAAGGTCAAGACAGAGCCAAGTCTTAAAAAGCTAGGGCAATCGGTGCAAGGGGTGCGACGCACAGCAAAAGGAGAG--SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................................................AGCCAAAGCAGCAGCAACGACC...................................................................................................................................................2231.0030300000000
..................................................................................................................................................................................................................................................TGCGACGCACAGCAAAAGGAG....2131.0030200100000
..................................................................................................AGCCAAAGCAGCAGCAACGACCAAGAC..............................................................................................................................................2730.6720200000000
..................................................................................................................................................................................................................................................TGCGACGCACAGCAAAAGGAGA...2230.6720200000000
..................................................................................................AGCCAAAGCAGCAGCAACGACCAAG................................................................................................................................................2530.6720200000000
.....................................................................................................CAAAGCAGCAGCAACGACCAAGACCGC...........................................................................................................................................2730.6720200000000
..................................................................................................................................................................................................................................................TGCGACGCACAGCAAAAGGAGAG--2330.6720100000100
............................................................................................................................................................................TATGCAGACATCCTAAGGAAGGTC.......................................................................2420.5010100000000
..........................................................................................................................................TGCAATAGTCATCGCCGCCAC............................................................................................................2120.5010100000000
...........................................................................................................................................GCAATAGTCATCGCCGCCACC...........................................................................................................2120.5010100000000
..........................................................................................................................................TGCAATAGTCATCGCCGCCA.............................................................................................................2020.5010100000000
.....................................................................................................................................................................................................................TAAAAAGCTAGGGCAATCGGTGC...............................2320.5010100000000
................................................................................................................................CACGCAGCGATGCAATAGTCATCGCCG................................................................................................................2720.5010100000000
............................................................................................................................................................................TATGCAGACATCCTAAGGAAGG.........................................................................2220.5010100000000
..........................................................................................................................................TGCAATAGTCATCGCCGCC..............................................................................................................1920.5010100000000
...............................................................................................................................................TAGTCATCGCCGCCACCGGCAC......................................................................................................2220.5010010000000
...........................................................................................................................................GCAATAGTCATCGCCGCCA.............................................................................................................1920.5010100000000
.................................................................................................................................................................................AGACATCCTAAGGAAGGTCAAG....................................................................2220.5010000000100
..................................................................................................AGCCAAAGCAGCAGCAACGAA....................................................................................................................................................2130.3310100000000
................................................................................................................................................................................................................................GGCAATCGGTGCAAGGGGTG.......................2030.3310010000000
.......................................................................................................................................................................................................................................GGTGCAAGGGGTGCGACGCACAGCA...........2530.3310100000000
........................................................................................................................................................................................................................................GTGCAAGGGGTGCGACGCACAGC............2330.3310100000000
...................................................................................................GCCAAAGCAGCAGCAACGACC...................................................................................................................................................2130.3310100000000
.............................................................................................................................CGCCACGCAGCGATGCAATAGTCAA.....................................................................................................................2530.3310100000000
.........................................................................................................................................................................................................................................TGCAAGGGGTGCGACGCAA...............1930.3310100000000
..................................................................................................AGCCAAAGCAGCAGCAACGA.....................................................................................................................................................2030.3310100000000
...............................................................................................CAAAGCCAAAGCAGCAGCAACGA.....................................................................................................................................................2330.3310100000000
.......................................................................................................................................................................................................ACAGAGCCAAGTCTTAAAAAGCT.............................................2330.3310100000000
....................................................................................................................................................................................................................................................CGACGCACAGCAAAAGGAGAG--2130.3310100000000
............................................................................................................GCAGCAACGACCAAGACCGCCAC........................................................................................................................................2330.3310100000000
.........................................................................................................................................................................................................................................TGCAAGGGGTGCGACGCACAGCAAAA........2630.3310100000000
..................................................................................................AGCCAAAGCAGCAGCAACGACCAAGACC.............................................................................................................................................2830.3310100000000
..................................................................................................AGCCAAAGCAGCAGCAACGACCAA.................................................................................................................................................2430.3310100000000
...................................................................................................................................................................................................................................AATCGGTGCAAGGGGTGCGACG..................2230.3310100000000
.................................................................................................................................................................................................................................................GTGCGACGCACAGCAAAAGGAGA...2330.3310100000000
................................................................................................................CAACGACCAAGACCGCCACG.......................................................................................................................................2030.3310100000000
................................................................................................................CAACGACCAAGACCGCCACGC......................................................................................................................................2130.3310010000000
..................................................................................................AGCCAAAGCAGCAGCAACGAC....................................................................................................................................................2130.3310100000000
................................................................................................AAAGCCAAAGCAGCAGCAACGA.....................................................................................................................................................2230.3310100000000
........................................................................................................................AAGACCGCCACGCAGCGAT................................................................................................................................1930.3310100000000
..................................................................................................AGCCAAAGCAGCAGCAACG......................................................................................................................................................1930.3310100000000
...................................................................................................................................................................................................................................AATCGGTGCAAGGGGTGCGAC...................2130.3310000000100
..................................................................................................AGCCAAAGCAGCAGCAACGAAA...................................................................................................................................................2260.1710100000000
....................................................................................................CCAAAGCAGCAGCAACGACA...................................................................................................................................................2070.1410100000000
droFic1
G-----TCTAGGCCTTCCC-----GGGCAGACGAGCCTACG---GGAGAG-------GAAAAGTGGAAGAAGGTGGAAAGGAGGAAGGCAAAAGCCAAAGCCCCTAAACCCGCCAGAACCAAACCCGC-TAAGCGGGACGCGATTGTGGTGAAGGGGACAGAAAACTCCTCATACGCTGACATTCTGCGCTCGGTCAAAAGTGAACCATCGCTAAAAGGCCTAGCGCAACACGTTAGAGGAATCCGAAAGACGGCGAAAGGAGA---SizeHit CountTotal NormTotal
No Reads
droRho1
A-----TGCTGGGAAAGATAGCACC--AGCAAGCCCCAAAAACCTGGGAAGAAGCCAGAGGAATGGCAACAGGTGAAGCGGAAGGAAAGGAAGCCCAGGA-------------------TGCGACCGCCTCGTAATGATGCGATAGTGATCGCAACCTCCACTGGAGGGTCCTATGCGGATATCCTTAAAAAGGTTAAGGCTGAACCGCAGCTGAATGAGCTAGGACAGGCCGTACAGGCTGTCAGGCGCACAGCTAAGGGGGA---SizeHit CountTotal NormTotal
No Reads
droBia1
GGGGGAAATAGGGACCGAGAGCACC--AGTAAGCCCCAAAAACCC---------CCACAGGAGTGGAAAAAAGTAGAACCGAAGGCGAGGAAGCCCAAGG-------------------TACGTCCGCCACGAAATGACGCGATAGTTATCGCAACATCTACTGG-GGGTCCTACGCGGACATCCTTAAAAAGGTAAAGGCAGATCCACAGCTGGAAGACCTAGGTCAAGCTGTACAGGCCGTCAGGCGAACAGCAAAGGGGGA---SizeHit CountTotal NormTotal
No Reads
droTak1
A-----CGCTGGGACAGAGAGCACC--AGCAAGCCCAAAAAACCTGGGAAGAAGCCTGAGGAATGGCAACAGGTTAGACAGAAGATAAGGAAGCCAAGGA-------------------TGCGACCGCCTCGCAATGACGCGATAGTGATCGCCACCTCCTTTGGAGGGTCCTATGCGGACATCCTTAAAAAGGTTAAGGCTGAACCGCAGCTGAAAGAGCTAGGACAAGCCGTACAGGCTGTCAGGCGCACAGCTAAGGGGGA---SizeHit CountTotal NormTotal
No Reads
droEug1
G-----CTATG--GCAAAGAGCACC--AGCAATCCCCAAAAACCTGAGATGAAACCAGGAGAGTGGAAACAGGTGAAACAGAAGACACGGAAGCGCAAGG-------------------TGCGACCGCCACGGATTGATGCGATAGTCATCGCAACCTCCACGGGTGGGTCCTATGCAGATATCCTGAAAACAGTTAAGACAGAGCCTCAACTGAAGGAGGTAGGACAAGCAGTACATGCTGTCAGGCGCACAGCTAAAGGGGA---SizeHit CountTotal NormTotal
No Reads

Generated: 06/08/2015 at 03:00 PM