ID:

dpe_641

 Coordinate:

scaffold_103:33074-33118 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-7.2 -7.2 -7.0

Flybase annnotation

intron [Dper\GL15607-in]; CDS [Dper\GL15607-cds]; CDS [Dper\GL15607-cds]; exon [dper_GLEANR_16849:6]; exon [dper_GLEANR_16849:5]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------##################################################
TGCAATGGATACGACGCCTTTCTCTGAGCTGGCACTAGAGTCGCAGTCCAGTGTTGCCGCAGAAGATCCAGAGCGTCAACCTGAGACAGGTCCAGAGCCAGAGACGGAGCCTGAGTCTTTTGCCGATCCTCAACTCCAAGAAGAT
**************************************************..((((.(((............))).))))...............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M021
embryo
 M042
female body
 V042
embryo
 V111
male body		 V057
head
................................................................GATCCAGAGCGTCAACCTGA............................................................. 20 0 1 13.00 13 13 0 0 0 0
........ATACGACGCCTTTCTCTGAGCT................................................................................................................... 22 0 1 9.00 9 9 0 0 0 0
.......GATACGACGCCTTTCTCTGAGCT................................................................................................................... 23 0 1 8.00 8 8 0 0 0 0
....ATGGATACGACGCCTTTCTCTGAGCT................................................................................................................... 26 0 1 4.00 4 4 0 0 0 0
................................................................GATCCAGAGCGTCAACCTGG............................................................. 20 1 1 4.00 4 4 0 0 0 0
.......GATACGACGCCTTTCTCTGAGCTGG................................................................................................................. 25 0 1 4.00 4 4 0 0 0 0
.................CTTTCTCTGAGCTGGCACTAGAGT........................................................................................................ 24 0 1 4.00 4 4 0 0 0 0
......................................................................................................GACGGAGCCTGAGTCTTTTGCCGATCCT............... 28 0 1 3.00 3 3 0 0 0 0
...................TTCTCTGAGCTGGCACTA............................................................................................................ 18 0 1 3.00 3 3 0 0 0 0
......................................................................................................GACGGAGCCTGAGTCTTTTGCC..................... 22 0 1 3.00 3 3 0 0 0 0
...............GCCTTTCTCTGAGCTGGCACT............................................................................................................. 21 0 1 3.00 3 3 0 0 0 0
.......................................GTCGCAGTCCAGTGTTGC........................................................................................ 18 0 1 3.00 3 2 0 1 0 0
........ATACGACGCCTTTCTCTGAGCTGG................................................................................................................. 24 0 1 3.00 3 3 0 0 0 0
...............................................................AGATCCAGAGCGTCAACCTGA............................................................. 21 0 1 3.00 3 3 0 0 0 0
..................TTTCTCTGAGCTGGCACTA............................................................................................................ 19 0 1 2.00 2 2 0 0 0 0
.................CTTTCTCTGAGCTGGCACTAGAGTC....................................................................................................... 25 0 1 2.00 2 2 0 0 0 0
..........ACGACGCCTTTCTCTGAGCT................................................................................................................... 20 0 1 2.00 2 2 0 0 0 0
..............CGCCTTTCTCTGAGCTGGCACTAGAGT........................................................................................................ 27 0 1 2.00 2 2 0 0 0 0
.....................CTCTGAGCTGGCACTAGAGT........................................................................................................ 20 0 1 2.00 2 2 0 0 0 0
..............CGCCTTTCTCTGAGCTGG................................................................................................................. 18 0 1 2.00 2 2 0 0 0 0
.............ACGCCTTTCTCTGAGCTGGCACTAGG.......................................................................................................... 26 1 1 2.00 2 2 0 0 0 0
........ATACGACGCCTTTCTCTGA...................................................................................................................... 19 0 1 2.00 2 2 0 0 0 0
...AATGGATACGACGCCTTTCTCTGAGCC................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0
....................................................GTTGCCGCAGAAGATCCAGAGC....................................................................... 22 0 1 1.00 1 0 0 1 0 0
......GGATACGACGCCTTTCTCTGAGCTGGC................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0
.................................................................ATCCAGAGCGTCAACCTGG............................................................. 19 1 1 1.00 1 1 0 0 0 0
.....................................................................................................................TTTTGCCGATCCTCAACTCC........ 20 0 1 1.00 1 0 1 0 0 0
........GTACGACGCCTTTCTCTGA...................................................................................................................... 19 1 1 1.00 1 1 0 0 0 0
............GACGCCTTTCTCTGAGCT................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0
.................................................................ATCCAGAGCGTCAACCTGA............................................................. 19 0 1 1.00 1 1 0 0 0 0
.........................................CGCAGTCCAGTGTTGCCGCAGAA................................................................................. 23 0 1 1.00 1 0 1 0 0 0
....................................................................................................GAGACGGAGCCTGAGTCTT.......................... 19 0 1 1.00 1 0 0 0 1 0
........................................................................................................CGGAGCCTGAGTCTTTTGCC..................... 20 0 1 1.00 1 1 0 0 0 0
........ATACGACGCCTTTCTCTGAGCC................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0
.......GATACGACGCCTTTCTCTGAGCTGGCACT............................................................................................................. 29 0 1 1.00 1 1 0 0 0 0
....ATGGATACGACGCCTTTCTCTGATCTGG................................................................................................................. 28 1 1 1.00 1 1 0 0 0 0
........ATACGACGCCTTTCTCTGAGCTGGC................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0
..........ACGACGCCTTTCTCTGAGCTG.................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0
......................TCTGAGCTGGCACTAGAGT........................................................................................................ 19 0 1 1.00 1 1 0 0 0 0
..................................................................................................CAGAGACGGAGCCTGAGT............................. 18 0 1 1.00 1 1 0 0 0 0
..............CGCCTTTCTCTGAGCTGGCACTAGG.......................................................................................................... 25 1 1 1.00 1 1 0 0 0 0
.GCAATGGATACGACGCCTTTCTCTGAGCT................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0
........ATACGACGCCTTGCTCTGAGCTGG................................................................................................................. 24 1 1 1.00 1 1 0 0 0 0
...AATGGATACGACGCCTTTCTCTGAGCT................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
........................................................................................................CGGAGCCTGAGTCTTTTGCCC.................... 21 1 1 1.00 1 1 0 0 0 0
.................CTTTCTCTGAGCTGGCACTAGA.......................................................................................................... 22 0 1 1.00 1 1 0 0 0 0
........ATACGACGCCTTGCTCTGAGCTGGC................................................................................................................ 25 1 1 1.00 1 1 0 0 0 0
...................................................................................................AGAGACGGAGCCTGAGTCT........................... 19 0 1 1.00 1 1 0 0 0 0
.................CTTTCTCTGAGCTGGCACTAGG.......................................................................................................... 22 1 1 1.00 1 1 0 0 0 0
.......................................................................................................ACGGAGCCTGAGTCTTTTGCC..................... 21 0 1 1.00 1 1 0 0 0 0
..............CGCCTTTCTCTGAGCTGGCACTAGAGTCG...................................................................................................... 29 0 1 1.00 1 1 0 0 0 0
..............................................................................................GAGCCAGAGACGGAGCCTGAGT............................. 22 0 1 1.00 1 0 1 0 0 0
........ATACGACGCCTTTCTCTGG...................................................................................................................... 19 1 1 1.00 1 1 0 0 0 0
..........ACGACGCCTTTCTCTGAGCTGGCA............................................................................................................... 24 0 1 1.00 1 1 0 0 0 0
..........ACGACGCCTTTCTCTGAGCTGG................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0
..................................................................................................................GTCTTTTGCCGATCCTCAAC........... 20 0 1 1.00 1 1 0 0 0 0
..................TTTCTCTGAGCTGGCACTAGA.......................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
...........CGACGCCTTTCTCTGAGCT................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0
..................................CTAGAGTCGCAGTCCAGG............................................................................................. 18 1 1 1.00 1 1 0 0 0 0
..........................................................GCAGAAGATCCAGAGCGTCAACCTGAGA........................................................... 28 0 1 1.00 1 1 0 0 0 0
....................................................GTTGCCGCAGAAGATCCAGAGCGT..................................................................... 24 0 1 1.00 1 0 0 1 0 0
..................................................................................................CAGAGACGGAGCCTGAGG............................. 18 1 2 0.50 1 1 0 0 0 0
.........................................................................................................................GCCGATCGTCAACTCCAAA..... 19 2 17 0.18 3 3 0 0 0 0
....ATTGATACGAAGCCTTTGTC......................................................................................................................... 20 3 7 0.14 1 0 0 0 0 1

Anti-sense strand reads

ACGTTACCTATGCTGCGGAAAGAGACTCGACCGTGATCTCAGCGTCAGGTCACAACGGCGTCTTCTAGGTCTCGCAGTTGGACTCTGTCCAGGTCTCGGTCTCTGCCTCGGACTCAGAAAACGGCTAGGAGTTGAGGTTCTTCTA
**************************************************..((((.(((............))).))))...............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 V057
head
.....................................................................................CGTCCAGGTCTCGGTCTCTC........................................ 20 2 9 0.11 1 1 0
...............................................................................................................ACTCGGAAAACGGCAAGG................ 18 2 20 0.05 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_103:33024-33168 + dpe_641 TGC------AATGGATA---CGA------CGCCTT-TCTCTGAGCTGGCACTAGAGTCGCAGTCC---AGT-----------GTTGCCGC----AGAAGATCCAGAG------------------CGTCAACCTGAGACAGGTCCAGAGCCAGAG------------ACGGAGCCTGAGTCTTTTGCCGATCCTCA--ACTCCAA-GAAG-AT
dp5 Unknown_group_8:48425-48569 + dps_2251 TGC------AATGGATA---CGA------CGCCTT-TCTCTGAGCTGGCACTAGAGTCGCAGTCC---AGT-----------GTTGCCGC----AGAAGATCCAGAG------------------CGTCAACCTGAGACAGGTCCAGAGCCAGAG------------ACGGAGCCTGAGTCTTTTGCCGATCCTCA--ACTCCAA-GAAG-AT
droWil2 scf2_1100000004943:723971-724101 + AGC------AACCTTTA-----CATGATGCATCAC-TTGGGGCGCCTAGTAGTGAGCTCCTC---------------------------------GAAGATACGGAAACACAAGAAAAAACATTGCCCCGAGTGAATTCCG------------AG------------GTGGAACTAGAGCCTCGAGCAGACA---------CAGGC---G-AT
droVir3 scaffold_13052:804443-804550 - CGC------AACCGAAAAATCGA------CGCCT------------AGCACCACAGTGGCGACCGT----CCGCCAAGATGTGGTGCCAGACAAAGTGGGTGGTG-------------------------AACAGGAACAAGTCGC--------G------------ACGGCGTCGGA-------------------------------G-TC
droGri2 scaffold_14822:153821-153919 + AAG------AACAAGAA---CAA------GAACAAGACCTGGAGCTGGAGCTGGAGCTGGAGCTT---AAG-----------GAATCAGT----GGGAGAT--------------------------------------------------------------GGAAAGGAGCCTAGAT-------CAAAGA---------CAGTT---GAAC
droFic1 scf7180000454040:528782-528926 + TGTAGATGTTTCA---------AATAATGACTCTA-CAGGCGAACAAGCAACAGAGTCTCTCAAACCGAAT-----------AACGAT----------GACGTAGAT------------------CCTCAGGCTGATGTAAATCCAG------AGCCAAAGCCTGAGGACAACGTTGAC---------GAGAAAAGAATGTCCGCT---A-AT
droEle1 scf7180000491238:229537-229670 + TCC-----------------------------CTA-CTAGGGACTCAACTAATAAACTTCTTTCAACCGAT-----------AACACAGG----AGAAGACGTAGAT------------------CCAAACTCAGAACTAAAGTCTG------AACCAAAGGCAGAGACGAGCCTTGAG---------GAAAATCCCAAATCTACTGATA-GC
droRho1 scf7180000778020:10179-10323 - CGT------TTTA---------GAAAAGGCCCCTA-CTAGGGAGCCAACAAAAGACTTGCTTTCATCGAAT-----------AACACAGA----AGTAGATGTAGAT------------------CGCCAGTCCGATTTAAATTTAG------ACCTAAAGCCAGAGACGGACCTTGAG---------GAAAACGCCAAATCTACT---G-AT
droBia1 scf7180000301495:893926-894031 - AAC------A----------------------------------------ATGGACTCCCTTTTAAAGAAT-----------AATACAGA----TGAGGTTGTAGAA------------------CACCAGTCCGGTACAAGTACAG------ATTCCAAGCCAGAGGAGGACTTGGAG---------GACCG-----ACTCCAG--------
droTak1 scf7180000414054:30359-30466 - TC-------A------------ATAGACGTCACTA-CACAGGAGCCAACAACAGAGTCCCTTTCAACGAAT-----------AATACAGG----GCAGGATGTAGAT------------------CTCCAATCCGATTCAAGTTCGG------ACTCTAAGCCAGAT----------------------------------------------
droEug1 scf7180000408984:287792-287918 + TGT------TTTA---------GATGAAGTCGCTA-CTAATGAGTCACCAACGGAGACCAATTCAACAAAT-----------AACACAGA----CATAGATTTAAAT------------------CTCCAGTTCCCTTTAAAATCAG------ACGAAATGTCAGAGACGGATTTGGAA---------GAT----------------------
dm3 chr4:941152-941263 - TTC------A------------GAAGACATTTCCT-CCAGAGAGTCAGCAATAAAGTCAACTTCTACAAAA-----------AATACAGG----AGTAGATGTAGGT------------------CTCCAAT------------CAG------ATTCTAAGCCAGAGACTACCCTTAAC---------GAT----------------------
droSim2 4:735663-735774 - TTC------A------------GAAGATACTTCCT-CCAGAGAGTCAGCAAAAAAGTCAATTTCAACAAAC-----------AATACAGG----AGTAGATGTAGAT------------------CTG------------AAATCAG------ATTCTAAGTCAGTGACTACCCTTGAC---------GAT----------------------
droSec2 scaffold_30:643269-643380 - TTC------A------------GAAGATACTTCCT-CCAGAGAGTCAGCAAAAAAGTCAATTTCAACAAAC-----------AATACAGG----AGTAGATGTAGAT------------------CTA------------AAATCAG------ATTCTAAGTCAGTGACTACCCTTGAC---------GAT----------------------
droYak3 4:1006752-1006877 - TAT------------------------------CT-CAAGAGAGTCAGCAATAAAGTCAATTCCAACGAAT-----------AATACAGG----AGTAGATGTAGAT------------------CTCCAGTCAGATTCTAATCCAG------ATCCCAAGCCAGAGACTACCCTTGAC---------GATAAACAGGACTCTGA--------
droEre2 scaffold_4512:334900-335032 + TCG--ATGTTTTA---------AAAGACATCTCCT-CAAAAGAGTCAGCAATAAAGTCAATTTCAACGAAT-----------AATACAGG----AGTAGATGTAGAT------------------CTCCAGTCAGACTCTAATCCAG------ATCCTAAGCCAGAGACTACCCTTGAC---------GATAA--------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
TGC------AATGGATA---CGA------CGCCTT-TCTCTGAGCTGGCACTAGAGTCGCAGTCC---AGT-----------GTTGCCGC----AGAAGATCCAGAG------------------CGTCAACCTGAGACAGGTCCAGAGCCAGAG------------ACGGAGCCTGAGTCTTTTGCCGATCCTCA--ACTCCAA-GAAG-ATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................................................................GATCCAGAG------------------CGTCAACCTGA.............................................................................20113.00131300000
..............ATA---CGA------CGCCTT-TCTCTGAGCT.......................................................................................................................................................................2219.009900000
.............GATA---CGA------CGCCTT-TCTCTGAGCT.......................................................................................................................................................................2318.008800000
..........ATGGATA---CGA------CGCCTT-TCTCTGAGCT.......................................................................................................................................................................2614.004400000
..................................................................................................GATCCAGAG------------------CGTCAACCTGG.............................................................................2014.004400000
.............GATA---CGA------CGCCTT-TCTCTGAGCTGG.....................................................................................................................................................................2514.004400000
................................CTT-TCTCTGAGCTGGCACTAGAGT............................................................................................................................................................2414.004400000
..........................................................................................................................................................G------------ACGGAGCCTGAGTCTTTTGCCGATCCT...................2813.003300000
..................................T-TCTCTGAGCTGGCACTA................................................................................................................................................................1813.003300000
..........................................................................................................................................................G------------ACGGAGCCTGAGTCTTTTGCC.........................2213.003300000
..............................GCCTT-TCTCTGAGCTGGCACT.................................................................................................................................................................2113.003300000
.......................................................GTCGCAGTCC---AGT-----------GTTGC..............................................................................................................................1813.003201000
..............ATA---CGA------CGCCTT-TCTCTGAGCTGG.....................................................................................................................................................................2413.003300000
.................................................................................................AGATCCAGAG------------------CGTCAACCTGA.............................................................................2113.003300000
.................................TT-TCTCTGAGCTGGCACTA................................................................................................................................................................1912.002200000
................................CTT-TCTCTGAGCTGGCACTAGAGTC...........................................................................................................................................................2512.002200000
................A---CGA------CGCCTT-TCTCTGAGCT.......................................................................................................................................................................2012.002200000
.............................CGCCTT-TCTCTGAGCTGGCACTAGAGT............................................................................................................................................................2712.002200000
.....................................CTCTGAGCTGGCACTAGAGT............................................................................................................................................................2012.002200000
.............................CGCCTT-TCTCTGAGCTGG.....................................................................................................................................................................1812.002200000
......................A------CGCCTT-TCTCTGAGCTGGCACTAGG..............................................................................................................................................................2612.002200000
..............ATA---CGA------CGCCTT-TCTCTGA..........................................................................................................................................................................1912.002200000
.........AATGGATA---CGA------CGCCTT-TCTCTGAGCC.......................................................................................................................................................................2711.001100000
..................................................................................GTTGCCGC----AGAAGATCCAGAG------------------C.......................................................................................2211.001001000
............GGATA---CGA------CGCCTT-TCTCTGAGCTGGC....................................................................................................................................................................2711.001100000
...................................................................................................ATCCAGAG------------------CGTCAACCTGG.............................................................................1911.001100000
.....................................................................................................................................................................................TTTTGCCGATCCTCA--ACTCC..........2011.001010000
.....................GA------CGCCTT-TCTCTGAGCT.......................................................................................................................................................................1811.001100000
...................................................................................................ATCCAGAG------------------CGTCAACCTGA.............................................................................1911.001100000
.........................................................CGCAGTCC---AGT-----------GTTGCCGC----AGAA...................................................................................................................2311.001010000
........................................................................................................................................................GAG------------ACGGAGCCTGAGTCTT..............................1911.001000001
........................................................................................................................................................................CGGAGCCTGAGTCTTTTGCC.........................2011.001100000
..............ATA---CGA------CGCCTT-TCTCTGAGCC.......................................................................................................................................................................2211.001100000
.............GATA---CGA------CGCCTT-TCTCTGAGCTGGCACT.................................................................................................................................................................2911.001100000
..............ATA---CGA------CGCCTT-TCTCTGAGCTGGC....................................................................................................................................................................2511.001100000
................A---CGA------CGCCTT-TCTCTGAGCTG......................................................................................................................................................................2111.001010000
......................................TCTGAGCTGGCACTAGAGT............................................................................................................................................................1911.001100000
......................................................................................................................................................CAGAG------------ACGGAGCCTGAGT.................................1811.001100000
.............................CGCCTT-TCTCTGAGCTGGCACTAGG..............................................................................................................................................................2511.001100000
.GC------AATGGATA---CGA------CGCCTT-TCTCTGAGCT.......................................................................................................................................................................2911.001100000
.........AATGGATA---CGA------CGCCTT-TCTCTGAGCT.......................................................................................................................................................................2711.001100000
........................................................................................................................................................................CGGAGCCTGAGTCTTTTGCCC........................2111.001100000
................................CTT-TCTCTGAGCTGGCACTAGA..............................................................................................................................................................2211.001100000
.......................................................................................................................................................AGAG------------ACGGAGCCTGAGTCT...............................1911.001100000
................................CTT-TCTCTGAGCTGGCACTAGG..............................................................................................................................................................2211.001100000
.......................................................................................................................................................................ACGGAGCCTGAGTCTTTTGCC.........................2111.001100000
.............................CGCCTT-TCTCTGAGCTGGCACTAGAGTCG..........................................................................................................................................................2911.001100000
..................................................................................................................................................GAGCCAGAG------------ACGGAGCCTGAGT.................................2211.001010000
..............ATA---CGA------CGCCTT-TCTCTGG..........................................................................................................................................................................1911.001100000
................A---CGA------CGCCTT-TCTCTGAGCTGGCA...................................................................................................................................................................2411.001100000
................A---CGA------CGCCTT-TCTCTGAGCTGG.....................................................................................................................................................................2211.001100000
..................................................................................................................................................................................GTCTTTTGCCGATCCTCA--AC.............2011.001100000
.................................TT-TCTCTGAGCTGGCACTAGA..............................................................................................................................................................2111.001100000
....................CGA------CGCCTT-TCTCTGAGCT.......................................................................................................................................................................1911.001100000
..................................................CTAGAGTCGCAGTCC---AGG-----------...................................................................................................................................1811.001100000
........................................................................................GC----AGAAGATCCAGAG------------------CGTCAACCTGAGA...........................................................................2811.001100000
..................................................................................GTTGCCGC----AGAAGATCCAGAG------------------CGT.....................................................................................2411.001001000
......................................................................................................................................................CAGAG------------ACGGAGCCTGAGG.................................1820.501100000
dp5
TGC------AATGGATA---CGA------CGCCTT-TCTCTGAGCTGGCACTAGAGTCGCAGTCC---AGT-----------GTTGCCGC----AGAAGATCCAGAG------------------CGTCAACCTGAGACAGGTCCAGAGCCAGAG------------ACGGAGCCTGAGTCTTTTGCCGATCCTCA--ACTCCAA-GAAG-ATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................................................................................................................GTCAACCTGAGACAGGTCCAGAGCC..............................................................2514.0040400000000
..................................................................................GTTGCCGC----AGAAGATCCAGAG------------------CGT.....................................................................................2413.0030100200000
.......................................................................................................................................................AGAG------------ACGGAGCCTGAGTCTTT.............................2112.0020200000000
.............GATA---CGA------CGCCTT-TCTCTGAGCTGGC....................................................................................................................................................................2612.0020100000001
.........................................................CGCAGTCC---AGT-----------GTTGCCG............................................................................................................................1812.0020200000000
..................................................................................GTTGCCGC----AGAAGATCCAGAG------------------C.......................................................................................2212.0020200000000
................................................................................................................................CAACCTGAGACAGGTCCAGAGCC..............................................................2312.0020200000000
........................................................................................................................................................GAG------------ACGGAGCCTGAGTCT...............................1811.0010100000000
..................................................................................GTTGCCGC----AGAAGATCCAGAG------------------........................................................................................2111.0010010000000
.....................................................GAGTCGCAGTCC---AGT-----------GTTGC..............................................................................................................................2011.0010100000000
.....................GA------CGCCTT-TCTCTGAGCTG......................................................................................................................................................................1911.0010100000000
.....................................................GAGTCGCAGTCC---AGT-----------GTTGCCGC----.......................................................................................................................2311.0010100000000
...................................................................................................ATCCAGAG------------------CGTCAACCTGAGACAGGTCC....................................................................2811.0010010000000
.......................................................................................CGC----AGAAGATCCAGAG------------------CGTCA...................................................................................2111.0010000100000
.............GATA---CGA------CGCCTT-TCTCTGA..........................................................................................................................................................................2011.0010100000000
................................................................................................................................................................................GAGTCTTTTGCCGATCCTCA--ACTCC..........2511.0010001000000
....................................................................................................................................................................................CTTTTGCCGATCCTCA--ACTCCAA-.......2311.0010100000000
...........................................................CAGTCC---AGT-----------GTTGCCGC----A......................................................................................................................1811.0010000100000
TGC------AATGGATA---CGA------CGCCT...................................................................................................................................................................................1911.0010100000000
.....................................................................................GCCGC----AGAAGATCCAGAG------------------CGTC....................................................................................2211.0010000010000
.................................TT-TCTCTGAGCTGGCACTAGAGTCGCA........................................................................................................................................................2711.0010100000000
..................................T-TCTCTGAGCTGGCACTAGAGTCGCAG.......................................................................................................................................................2711.0010100000000
...................................................................................TTGCCGC----AGAAGATCCAGAG------------------C.......................................................................................2111.0010100000000
.....................................................................................GCCGC----AGAAGATCCAGAG------------------C.......................................................................................1911.0010100000000
.......................................................................................................................................................AGAG------------ACGGAGCCTGAGTCTT..............................2011.0010100000000
.......................................................GTCGCAGTCC---AGT-----------GTTGC..............................................................................................................................1811.0010100000000
........................................................TCGCAGTCC---AGT-----------GTTGCCGC----AGAA...................................................................................................................2411.0010000010000
.......................................................................................................AGAG------------------CGTCAACCTGAGACA.........................................................................1911.0010100000000
..................................................CTAGAGTCGCAGTCC---AGT-----------GTTGC..............................................................................................................................2311.0010010000000
.................................................ACTAGAGTCGCAGTCC---AGT-----------...................................................................................................................................1911.0010000100000
.......................................CTGAGCTGGCACTAGAGT............................................................................................................................................................1811.0010100000000
droWil2
AGC------AACCTTTA-----CATGATGCATCAC-TTGGGGCGCCTAGTAGTGAGCTCCTC---------------------------------GAAGATACGGAAACACAAGAAAAAACATTGCCCCGAGTGAATTCCG------------AG------------GTGGAACTAGAGCCTCGAGCAGACA---------CAGGC---G-ATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................................................................................................................................................G------------GTGGAACTAGAGCCTCGAGC..........................21120.0020004160
.....................................................................................................................................GAATTCCG------------AG------------GTGGAACTAGAGCCT...............................2518.00800260
..........................................................................................................................................................G------------GTGGAACTAGAGCCTCGAGCA.........................2216.00600060
.......................................................................................................................................................................GTGGAACTAGAGCCTCGAGC..........................2015.00500050
..........................................................................................................................................................G------------GTGGAACTAGAGCCTCGA............................1913.00300030
...........................................GCCTAGTAGTGAGCTCCTC---------------------------------GAA...................................................................................................................2213.00300030
..........................................................................................................................................................................GAACTAGAGCCTCGAGCAGACA---------CA..........2413.00300120
..........................................................................................................................................................G------------GTGGAACTAGAGCCTCGAGCAGACA---------............2613.00300120
........................................GGCGCCTAGTAGTGAGCTCCTC---------------------------------GAAG..................................................................................................................2612.00200020
..........................................................................................................................................................................GAACTAGAGCCTCGAGCAGACA---------CAGGC---....2712.00200020
....................................TTGGGGCGCCTAGTAGTGAG.............................................................................................................................................................2012.00200110
..........................................CGCCTAGTAGTGAGCTCCT........................................................................................................................................................1912.00200020
...........................................GCCTAGTAGTGAGCTCCTC---------------------------------GAAGAT................................................................................................................2512.00200020
............................................................................................................................................G------------AG------------GTGGAACTAGAGCCT...............................1812.00200020
.......................................................................................................................................ATTCCG------------AG------------GTGGAACTAGAGC.................................2112.00200020
............................................................................................................................................................................ACTAGAGCCTCGAGCAGACA---------CAGGC---....2511.00100010
...........................................................................................................................TGCCCCGAGTGAATTCCG------------A...........................................................1911.00100010
.......................................................GCTCCTC---------------------------------GAAGATACGGAAACACAAG...................................................................................................2611.00100010
............................................CCTAGTAGTGAGCTCCTC---------------------------------G.....................................................................................................................1911.00101000
......................CATGATGCATCAC-TTGGGGCGCCTAGT...................................................................................................................................................................2711.00100010
..........................................................................................................................................................................GAACTAGAGCCTCGAGCAG........................1911.00100010
...................................................................................................................................GTGAATTCCG------------AG------------GTGGAACTAGAGCC................................2611.00100100
.......................................................................................................................................................................GTGGAACTAGAGCCTCGAG...........................1911.00100010
....................................TTGGGGCGCCTAGTAGTGAGCTC..........................................................................................................................................................2311.00110000
...............TA-----CATGATGCATCAC-TTGGG............................................................................................................................................................................2011.00100010
.........................................................................................................................ATTGCCCCGAGTGAATTCG.........................................................................1911.00100010
................................CAC-TTGGGGCGCCTAGTAGTGAGCT...........................................................................................................................................................2511.00100010
...............................................AGTAGTGAGCTCCTC---------------------------------GAAGATACGGA...........................................................................................................2611.00100010
......................................................................................................................................................................................CGAGCAGACA---------CAGGC---G-AT1811.00100010
..........................................................................................................................................................G------------GTGGAACTAGAGCCTCGAGCAGACA---------CA..........2811.00100010
....................................................................................................................................TGAATTCCG------------AG------------GTGGAACTAGAGCC................................2511.00101000
.........................................GCGCCTAGTAGTGAGCTC..........................................................................................................................................................1811.00100010
........................................................................................................................................TTCCG------------AG------------GTGGAACTAGAGC.................................2011.00100010
.............................................CTAGTAGTGAGCTCCTC---------------------------------GAAGAT................................................................................................................2311.00100010
..................................................AGTGAGCTCCTC---------------------------------GAAGATACGGAAACA.......................................................................................................2711.00100010
..................................................AGTGAGCTCCTC---------------------------------GAAGATACGGAAAC........................................................................................................2611.00100010
..................................................AGTGAGCTCCTC---------------------------------GAAGATACGGAA..........................................................................................................2411.00100010
..........................................................................................................................................................G------------GTGGAACTAGAGCCTCGAGCAGACA---------C...........2711.00100010
......................CATGATGCATCAC-TTGGGGC..........................................................................................................................................................................2011.00100010
..........................................................................................................................................................G------------GTGGAACTAGAGCCTCGAGCAGAC......................2511.00100010
.............................................................C---------------------------------GAAGATACGGAAACACA.....................................................................................................1811.00100010
......................................................................................................................................AATTCCG------------AG------------GTGGAACTAGAGCCT...............................2411.00100010
..................................C-TTGGGGCGCCTAGTAGTGAGC............................................................................................................................................................2211.00100010
..............TTA-----CATGATGCATCAC-TTGGGGC..........................................................................................................................................................................2311.00100010
..................................................AGTGAGCTCCTC---------------------------------GAAGAT................................................................................................................1811.00100010
...................................................................................................................................GTGAATTCCG------------AG------------GTGGAACT......................................2011.00100010
.............................CATCAC-TTGGGGCGCCTAGTAGT................................................................................................................................................................2311.00100010
...............................................AGTAGTGAGCTCCTC---------------------------------GAAGA.................................................................................................................2011.00100010
...................................................GTGAGCTCCTC---------------------------------GAAGATAC..............................................................................................................1911.00101000
........................................................................................................................................TTCCG------------AG------------GTGGAACTAGAGCCT...............................2211.00110000
..........................................................CCTC---------------------------------GAAGATACGGAAAC........................................................................................................1811.00100010
............................................................................................................................GCCCCGAGTGAATTCCG------------AG------------..............................................1911.00100010
..........................................................................................................................................................G------------GTGGAACTAGAGCCTCGAGCAG........................2311.00100010
................A-----CATGATGCATCAC-TTGG.............................................................................................................................................................................1811.00100010
................A-----CATGATGCATCAC-TTGGGGCGCCTA.....................................................................................................................................................................2611.00100010
.....................................................GAGCTCCTC---------------------------------GAAGATACGGA...........................................................................................................2011.00100100
..........................................................................................................................TTGCCCCGAGTGAATTCCG------------AG------------GTG...........................................2411.00100010
.GC------AACCTTTA-----CATGATGCATCA...................................................................................................................................................................................2211.00100010
...............................................AGTAGTGAGCTCCTC---------------------------------GAAGATA...............................................................................................................2211.00100100
...........................................................................................................................................................................AACTAGAGCCTCGAGCAGACA---------CAGGC---....2611.00100100
.............TTTA-----CATGATGCATCAC-TTGGGGC..........................................................................................................................................................................2411.00100010
...............................................................................................GAAGATACGGAAACACAAGA..................................................................................................2011.00100010
............................................................................................................................................G------------AG------------GTGGAACTAGAGCCTCGAGCA.........................2411.00100010
...................................................GTGAGCTCCTC---------------------------------GAAGATACG.............................................................................................................2011.00100100
............................................CCTAGTAGTGAGCTCCTC---------------------------------GAAGAT................................................................................................................2411.00100100
...........CCTTTA-----CATGATGCATCAC-T................................................................................................................................................................................2011.00100010
..............................................................................................................................................................................TAGAGCCTCGAGCAGACA---------CAGGC---....2311.00100010
..........................................CGCCTAGTAGTGAGCTCCTC---------------------------------GAA...................................................................................................................2311.00100010
.........................................................................................................................................................AG------------GTGGAACTAGAGCCTCGAG...........................2111.00100100
.......................................................................................................................................ATTCCG------------AG------------GTGGAACTAGAGCCT...............................2311.00101000
...........................................................................................................................TGCCCCGAGTGAATTCCG------------AG------------..............................................2011.00100010
................................CAC-TTGGGGCGCCTAGTAGTGA..............................................................................................................................................................2211.00100010
.........AACCTTTA-----CATGATGCATCAC-T................................................................................................................................................................................2211.00100010
...............................................................................................................................................................................AGAGCCTCGAGCAGACA---------CAGGC---....2211.00100010
................................CAC-TTGGGGCGCCTAGTAG.................................................................................................................................................................1911.00100010
................................................GTAGTGAGCTCCTC---------------------------------GAAGATA...............................................................................................................2111.00100010
................A-----CATGATGCATCAC-TTGGGGC..........................................................................................................................................................................2111.00100010
.......................................................GCTCCTC---------------------------------GAAGATACGGAA..........................................................................................................1911.00100010
...............................................................................................GAAGATACGGAAACACAAGAA.................................................................................................2111.00100010
..............TTA-----CATGATGCATCAC-TTGGG............................................................................................................................................................................2111.00100010
.........AACCTTTA-----CATGATGCAT.....................................................................................................................................................................................1811.00100010
..............TTA-----CATGATGCATCAC-TTGGGG...........................................................................................................................................................................2211.00100010
...........................................GCCTAGTAGTGAGCTCCTC---------------------------------GAAGATA...............................................................................................................2611.00101000
.............................................................................................................................................................................CTAGAGCCTCGAGCAGACA---------CAGGC---....2411.00100010
......................CATGATGCATCAC-TTGGG............................................................................................................................................................................1811.00100010
..................................C-TTGGGGCGCCTAGTAGTGAGCTC..........................................................................................................................................................2411.00100010
.......................................................................................................................................................................GTGGAACTAGAGCCTCGAGCA.........................2111.00100010
droVir3
CGC------AACCGAAAAATCGA------CGCCT------------AGCACCACAGTGGCGACCGT----CCGCCAAGATGTGGTGCCAGACAAAGTGGGTGGTG-------------------------AACAGGAACAAGTCGC--------G------------ACGGCGTCGGA-------------------------------G-TCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................................................GACCGT----CCGCCAAGATGTGGT................................................................................................................................2118.008000001000020001000000000000001000010000000000000000000000002000
........................................................................................................G-------------------------AACAGGAACAAGTCGC--------G------------ACGGC.........................................2312.002000000000000000000000000000000000000100000000000000000000001000
.................................................ACCACAGTGGCGACCGT----CCGC...........................................................................................................................................2112.002000000000000000100000000000000000000000000000000000000000001000
.........................................................................................................................................ACAAGTCGC--------G------------ACGGCGTCGGA-------------------------------....2112.002000000000000000001000000000000000000000000000000000000000001000
.............GAAAAATCGA------CGCCT------------AGCAC..................................................................................................................................................................2011.001000100000000000000000000000000000000000000000000000000000000000
...........................................................................................CAAAGTGGGTGGTG-------------------------AACAGGAA...........................................................................2211.001000000000000000001000000000000000000000000000000000000000000000
..............................................................................................AGTGGGTGGTG-------------------------AACAGGAACAAGTCG....................................................................2611.001000000000000000000000000000000000000100000000000000000000000000
..................................................................................GGTGCCAGACAAAGTGGGTGGTG-------------------------C..................................................................................2411.001000000000000000000000000000000000000000000000000000000000001000
................................CT------------AGCACCACAGTGGCGACCGT----CCGCC..........................................................................................................................................2711.001000100000000000000000000000000000000000000000000000000000000000
.................................T------------AGCACCACAGTGGCGACCGT----CC.............................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................................AACAGGAACAAGTCGC--------G------------ACGGCGT.......................................2411.001000000000000000000000100000000000000000000000000000000000000000
...................................................CACAGTGGCGACCGT----CCGC...........................................................................................................................................1911.001000000001000000000000000000000000000000000000000000000000000000
...........................................................CGACCGT----CCGCCAAGATG....................................................................................................................................1811.001000000000000000000000000000000000000100000000000000000000000000
.............................CGCCT------------AGCACCACAGTGGCGACCGT----CCGCCACA.......................................................................................................................................3311.001000000000000000000000000000000000000000000000000000000000010000
.....................................................................................................................................AGGAACAAGTCGC--------G------------ACGGCGT.......................................2111.001100000000000000000000000000000000000000000000000000000000000000
.......................................................................................CAGACAAAGTGGGTGGTG-------------------------AACAGGA............................................................................2511.001000000000000010000000000000000000000000000000000000000000000000
...........................................................................AAGATGTGGTGCCAGACAAAGTGGGT................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
....................CGA------CGCCT------------AGCACCACAGT............................................................................................................................................................1911.001000000000000000000000000000000001000000000000000000000000000000
........................................................................................................G-------------------------AACAGGAACAAGTCGC--------G------------ACGGCGTC......................................2611.001000000000001000000000000000000000000000000000000000000000000000
..........................................................................CAAGATGTGGTGCCAGACAAAG.....................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................GTG-------------------------AACAGGAACAAGTCGC--------G------------ACGGCGTC......................................2811.001000100000000000000000000000000000000000000000000000000000000000
........................................................................................AGACAAAGTGGGTGGTG-------------------------AAC................................................................................2011.001000100000000000000000000000000000000000000000000000000000000000
................................................................................GTGGTGCCAGACAAAGTGGGTGGC.............................................................................................................2411.001000100000000000000000000000000000000000000000000000000000000000
..........................................................................CAAGATGTGGTGCCAGACAAAGT....................................................................................................................2311.001000000000000000000000000000000000000010000000000000000000000000
.............GAAAAATCGA------CGCCT------------AGCACC.................................................................................................................................................................2111.001000000000000000000100000000000000000000000000000000000000000000
..............................................................................................................................................TCGC--------G------------ACGGCGTCGGA-------------------------------G-T.1811.001010000000000000000000000000000000000000000000000000000000000000
.......................................................................................................TG-------------------------AACAGGAACAAGTCGC--------G------------ACGGC.........................................2411.001001000000000000000000000000000000000000000000000000000000000000
.........................................................GGCGACCGT----CCGCCAAGATGT...................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................GCCAGACAAAGTGGGTGGTG-------------------------...................................................................................2011.001000000000000000000000000000000000001000000000000000000000000000
..................ATCGA------CGCCT------------AGCACCACA..............................................................................................................................................................1911.001000100000000000000000000000000000000000000000000000000000000000
.....................................................................................................GGTG-------------------------AACAGGAACAAGTCGC--------G------------ACGG..........................................2511.001000100000000000000000000000000000000000000000000000000000000000
...................................................................................................................................ACAGGAACAAGTCGC--------G------------ACGGCGTC......................................2411.001000000000000000000000000000000000000000000000000000000000000010
.....................................................................................GCCAGACAAAGTGGGTGGTG-------------------------A..................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.GC------AACCGAAAAATCGA------CGCCT------------AGCACC.................................................................................................................................................................2711.001000000000000000001000000000000000000000000000000000000000000000
....................CGA------CGCCT------------AGCACCACAG.............................................................................................................................................................1811.001000000000000000000000000000000000000010000000000000000000000000
...........................................................CGACCGT----CCGCCAAGATGT...................................................................................................................................1911.001000000000000000000000000000000000001000000000000000000000000000
..................................................CCACAGTGGCGACCGT----CCGC...........................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000001000
droGri2
AAG------AACAAGAA---CAA------GAACAAGACCTGGAGCTGGAGCTGGAGCTGGAGCTT---AAG-----------GAATCAGT----GGGAGAT--------------------------------------------------------------GGAAAGGAGCCTAGAT-------CAAAGA---------CAGTT---GAACSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.............................GAACAAGACCTGGAGCTGGA....................................................................................................................................................................2011.00101
........................................................................................................................................................................GGAGCCTAGAT-------CAAAGA---------CAGTT---GAAC2620.50110
................................................................................................GAGAT--------------------------------------------------------------GGAAAGGAGCCTAGAT-------C..........................2220.50101
.................................AAGACCTGGAGCTGGAGCT.................................................................................................................................................................1920.50101
......................................................................................CAGT----GGGAGAT--------------------------------------------------------------GGAAAGGAGCCTAGAT-------C..........................2820.50101
.....................................................................................TCAGT----GGGAGAT--------------------------------------------------------------GGAAAGGAGCCT......................................2420.50101
..................................................CTGGAGCTGGAGCTT---AAG-----------G..................................................................................................................................1920.50101
....................................................................AAG-----------GAATCAGT----GGGAGAT--------------------------------------------------------------G.................................................1920.50101
.....................................CCTGGAGCTGGAGCTGGA..............................................................................................................................................................1850.20110
droFic1
TGTAGATGTTTCA---------AATAATGACTCTA-CAGGCGAACAAGCAACAGAGTCTCTCAAACCGAAT-----------AACGAT----------GACGTAGAT------------------CCTCAGGCTGATGTAAATCCAG------AGCCAAAGCCTGAGGACAACGTTGAC---------GAGAAAAGAATGTCCGCT---A-ATSizeHit CountTotal NormTotal
No Reads
droEle1
TCC-----------------------------CTA-CTAGGGACTCAACTAATAAACTTCTTTCAACCGAT-----------AACACAGG----AGAAGACGTAGAT------------------CCAAACTCAGAACTAAAGTCTG------AACCAAAGGCAGAGACGAGCCTTGAG---------GAAAATCCCAAATCTACTGATA-GCSizeHit CountTotal NormTotal
No Reads
droRho1
CGT------TTTA---------GAAAAGGCCCCTA-CTAGGGAGCCAACAAAAGACTTGCTTTCATCGAAT-----------AACACAGA----AGTAGATGTAGAT------------------CGCCAGTCCGATTTAAATTTAG------ACCTAAAGCCAGAGACGGACCTTGAG---------GAAAACGCCAAATCTACT---G-ATSizeHit CountTotal NormTotal
No Reads
droBia1
AAC------A----------------------------------------ATGGACTCCCTTTTAAAGAAT-----------AATACAGA----TGAGGTTGTAGAA------------------CACCAGTCCGGTACAAGTACAG------ATTCCAAGCCAGAGGAGGACTTGGAG---------GACCG-----ACTCCAG--------SizeHit CountTotal NormTotal
No Reads
droTak1
TC-------A------------ATAGACGTCACTA-CACAGGAGCCAACAACAGAGTCCCTTTCAACGAAT-----------AATACAGG----GCAGGATGTAGAT------------------CTCCAATCCGATTCAAGTTCGG------ACTCTAAGCCAGAT----------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
TGT------TTTA---------GATGAAGTCGCTA-CTAATGAGTCACCAACGGAGACCAATTCAACAAAT-----------AACACAGA----CATAGATTTAAAT------------------CTCCAGTTCCCTTTAAAATCAG------ACGAAATGTCAGAGACGGATTTGGAA---------GAT----------------------SizeHit CountTotal NormTotal
No Reads
dm3
TTC------A------------GAAGACATTTCCT-CCAGAGAGTCAGCAATAAAGTCAACTTCTACAAAA-----------AATACAGG----AGTAGATGTAGGT------------------CTCCAAT------------CAG------ATTCTAAGCCAGAGACTACCCTTAAC---------GAT----------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................................................................................AGG----AGTAGATGTAGGT------------------CTCCAAT------------C....................................................................24119.001900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000100602000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................ACAGG----AGTAGATGTAGGT------------------CTCCAAT------------C....................................................................2619.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000700000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................AAAA-----------AATACAGG----AGTAGATGT..............................................................................................................2118.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................TACAGG----AGTAGATGTAGGT------------------CTCC....................................................................................2316.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000130010000
................................................................TACAAAA-----------AATACAGG----AGTAGATGTAGG...........................................................................................................2715.0050000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................ACAGG----AGTAGATGTAGGT------------------CTCC....................................................................................2215.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000010010010
....................................................................................TACAGG----AGTAGATGTAGGT------------------CTCCAAT------------C....................................................................2714.0040000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000000000000000000000000
...................................................................................................................................T------------CAG------ATTCTAAGCCAGAGACTACCCT......................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................TCCT-CCAGAGAGTCAGCAATAAAGTC...........................................................................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...............................................................................................GTAGATGTAGGT------------------CTCCAAT------------CA...................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................TAGATGTAGGT------------------CTCCAAT------------CAG------ATTC........................................................2514.0040000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000
.......................................................................................AGG----AGTAGATGTAGGT------------------CTCCAAT------------.....................................................................2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001201000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................AGAGAGTCAGCAATAAAGTCAACT.......................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................GACATTTCCT-CCAGAGAGTC.......................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................ATTTCCT-CCAGAGAGTCAGC....................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................AGATGTAGGT------------------CTCCAAT------------CAG------ATT.........................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................AGG----AGTAGATGTAGGT------------------CTC.....................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
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...........................................................................................................................................................TCTAAGCCAGAGACTACCCTTAAC---------GA.......................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................CAG------ATTCTAAGCCAGAGAC............................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
................................................................................................................................................CAG------ATTCTAAGCCAGAGACTAC.........................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................AAT------------CAG------ATTCTAAGCCAGAGA.............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................T------------CAG------ATTCTAAGCCAGAGACTACCCTT.....................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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droSim2
TTC------A------------GAAGATACTTCCT-CCAGAGAGTCAGCAAAAAAGTCAATTTCAACAAAC-----------AATACAGG----AGTAGATGTAGAT------------------CTG------------AAATCAG------ATTCTAAGTCAGTGACTACCCTTGAC---------GAT----------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................AGG----AGTAGATGTAGAT------------------CT......................................................................................1814.00400400000000000000
.........................................................................................G----AGTAGATGTAGAT------------------CTG------------AAATC....................................................................2213.00300300000000000000
.....................................................................................ACAGG----AGTAGATGTAGAT------------------........................................................................................1813.00301200000000000000
.....................................................................................ACAGG----AGTAGATGTAGAT------------------C.......................................................................................1913.00301200000000000000
...................................................................................ATACAGG----AGTAGATGTAGAT------------------C.......................................................................................2112.00201100000000000000
.TC------A------------GAAGATACTTCCT-CCAGAGAGTCA......................................................................................................................................................................2712.00200000001000100000
.............................................................................................................................................................TAAGTCAGTGACTACCCT......................................1812.00220000000000000000
...............................................................................................................................G------------AAATCAG------ATTCTAAGTCAGTGACT...........................................2511.00100010000000000000
.................................................................................................AGATGTAGAT------------------CTG------------AAATCAG------ATT.........................................................2311.00101000000000000000
......................................................................C-----------AATACAGG----AGTAGATGTAGAT------------------CT......................................................................................2411.00100100000000000000
..................................................................................................................................................G------ATTCTAAGTCAGTGACTACCCTTGAC---------.........................2711.00100010000000000000
........................................................TCAATTTCAACAAAC-----------AATACAGG----AGTAGA.................................................................................................................2911.00100000001000000000
...............................................GCAAAAAAGTCAATTTCAACAAAC-----------AATA...............................................................................................................................2811.00100010000000000000
.............................................................TTCAACAAAC-----------AATACAGG----AGTAGATGT..............................................................................................................2711.00100000001000000000
...............................................................CAACAAAC-----------AATACAGG----AGTAGATGTA.............................................................................................................2611.00100100000000000000
...........................................GTCAGCAAAAAAGTCAATTTCAACAAAC-----------A..................................................................................................................................2911.00100010000000000000
...................................................................................................ATGTAGAT------------------CTG------------AAATCAG------ATT.........................................................2111.00100100000000000000
..............................................................................................................................TG------------AAATCAG------ATTCTAAGT...................................................1811.00100010000000000000
.............................................................................................................................................AATCAG------ATTCTAAGTCAGTGACT...........................................2311.00100010000000000000
...................................................................................ATACAGG----AGTAGATGTAGAT------------------CT......................................................................................2211.00101000000000000000
...............................................................................................................................G------------AAATCAG------ATTCTAAGTCAGTGA.............................................2311.00100100000000000000
...................................................................................ATACAGG----AGTAGATGTAGAT------------------CTG------------AAATCA...................................................................2911.00101000000000000000
............................................................................................................................................................CTAAGTCAGTGACTACCCT......................................1911.00101000000000000000
...............................................................CAACAAAC-----------AATACAGG----AGT....................................................................................................................1911.00100010000000000000
............................................................................................................................................................CTAAGTCAGTGACTACCCTTGA...................................2211.00100010000000000000
..........................................................................................................T------------------CTG------------AAATCAG------ATTCTAAGTCAGTG..............................................2511.00100000000000100000
...................................................................................ATACAGG----AGTAGATGTAGAT------------------........................................................................................2011.00101000000000000000
...................................................................AAAC-----------AATACAGG----AGTAGATGTAGAT------------------CT......................................................................................2711.00100010000000000000
..........................................................................................................................................................TTCTAAGTCAGTGACTACC........................................1911.00110000000000000000
.................................................................................................AGATGTAGAT------------------CTG------------AAATCAG------ATTCTA......................................................2611.00100100000000000000
...............................................................................................................................G------------AAATCAG------ATTCTAAGTCAGTGACTACC........................................2811.00100100000000000000
.................................................................................................AGATGTAGAT------------------CTG------------AAATCAG------ATTCTAA.....................................................2711.00100010000000000000
......................................................................................CAGG----AGTAGATGTAGAT------------------C.......................................................................................1811.00100100000000000000
....................................................................................TACAGG----AGTAGATGTAGAT------------------........................................................................................1911.00100000010000000000
..C------A------------GAAGATACTTCCT-CCAGAGAGTCAGCA...................................................................................................................................................................2911.00100000001000000000
.............................................................................................................................CTG------------AAATCAG------ATTCTAAGTC..................................................2011.00100100000000000000
...................................................................................ATACAGG----AGTAGATGTAGAT------------------CTG------------AAA......................................................................2611.00100000000001000000
...................................................................................ATACAGG----AGTAGATGTAGAT------------------CTG------------AAATC....................................................................2811.00101000000000000000
....................................................AAAGTCAATTTCAACAAAC-----------AATACAGG----A......................................................................................................................2811.00100000010000000000
......................GAAGATACTTCCT-CCAGAGAGTCA......................................................................................................................................................................2411.00100010000000000000
..................................................................................................................................................G------ATTCTAAGTCAGTGACA...........................................1811.00100000000010000000
...........................................................................................................................................................TCTAAGTCAGTGACTACCCTTG....................................2211.00100000000000001000
....................................................................................TACAGG----AGTAGATGTAGAT------------------CT......................................................................................2111.00100100000000000000
droSec2
TTC------A------------GAAGATACTTCCT-CCAGAGAGTCAGCAAAAAAGTCAATTTCAACAAAC-----------AATACAGG----AGTAGATGTAGAT------------------CTA------------AAATCAG------ATTCTAAGTCAGTGACTACCCTTGAC---------GAT----------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................................................................................................AT------------------CTA------------AAATCAG------ATTCTAAGT...................................................2116.0060240
.............................................................................................................................CTA------------AAATCAG------ATTCTAAGT...................................................1913.0031020
................................................................AACAAAC-----------AATACAGG----AGT....................................................................................................................1812.0020020
...................................................................................ATACAGG----AGTAGATGTAGAT------------------CT......................................................................................2212.0020020
.....................................................................AC-----------AATACAGG----AGTAGATGTAGAT------------------........................................................................................2311.0010100
..........................ATACTTCCT-CCAGAGAGT........................................................................................................................................................................1811.0010010
....................................................................AAC-----------AATACAGG----AGTAGATGTAGAT------------------CT......................................................................................2611.0010010
TTC------A------------GAAGATACTTCCT-CCAGAGA..........................................................................................................................................................................2411.0010010
...................................................................AAAC-----------AATACAGG----AGTAGATGTA.............................................................................................................2211.0010010
...................................................................AAAC-----------AATACAGG----AGTAGATGTAG............................................................................................................2311.0010010
.....................................................................................ACAGG----AGTAGATGTAGAT------------------........................................................................................1811.0010010
......................................................................C-----------AATACAGG----AGTAGATGT..............................................................................................................1811.0010010
...................................................................................ATACAGG----AGTAGATGTAGAT------------------........................................................................................2011.0010010
.......................AAGATACTTCCT-CCAGAGA..........................................................................................................................................................................1911.0010010
......................................................................................CAGG----AGTAGATGTAGAT------------------C.......................................................................................1811.0010010
............................ACTTCCT-CCAGAGAGTCAGCAAAA................................................................................................................................................................2411.0010100
.........................................................................................................AT------------------CTA------------AAATCAG------ATTCTAAGTCAGT...............................................2511.0010010
...................................................................................................ATGTAGAT------------------CTA------------AAATCAG------ATTCTAAGT...................................................2711.0010010
..C------A------------GAAGATACTTCCT-CCAGAG...........................................................................................................................................................................2111.0010010
......................................................................C-----------AATACAGG----AGTAGATGTAGAT------------------CT......................................................................................2411.0010010
..........................ATACTTCCT-CCAGAGAGTC.......................................................................................................................................................................1911.0010010
..................................................................CAAAC-----------AATACAGG----AGTAGATGTA.............................................................................................................2311.0010100
...............................................................................................................................A------------AAATCAG------ATTCTAAGTC..................................................1811.0010010
...................................................................................ATACAGG----AGTAGATGTAGAT------------------CTA------------.........................................................................2311.0010100
...........................TACTTCCT-CCAGAGAGTCAGCA...................................................................................................................................................................2211.0010010
......................GAAGATACTTCCT-CCAGAGAGTC.......................................................................................................................................................................2311.0010100
droYak3
TAT------------------------------CT-CAAGAGAGTCAGCAATAAAGTCAATTCCAACGAAT-----------AATACAGG----AGTAGATGTAGAT------------------CTCCAGTCAGATTCTAATCCAG------ATCCCAAGCCAGAGACTACCCTTGAC---------GATAAACAGGACTCTGA--------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................................................................AT-----------AATACAGG----AGTAGATGT..............................................................................................................1912.00200100010000
...............................................................................................GTAGATGTAGAT------------------CTCCAGTCAG..............................................................................2212.00200000020000
.AT------------------------------CT-CAAGAGAGTCAGCAAT.................................................................................................................................................................2012.00200000020000
..............................................................................................AGTAGATGTAGAT------------------CTCCAGTCAGATT...........................................................................2611.00110000000000
.........................................................................................................................................................ATCCCAAGCCAGAGACTACCCTTGAC---------.........................2611.00101000000000
...........................................GTCAGCAATAAAGTCAATTCCAACGAA...............................................................................................................................................2711.00101000000000
...............................................................................................GTAGATGTAGAT------------------CTCCAGTCAGATTCT.........................................................................2711.00101000000000
.....................................................................................ACAGG----AGTAGATGTAGAT------------------CTCC....................................................................................2211.00101000000000
.................................................................................................AGATGTAGAT------------------CTCCAGTCAGATTCT.........................................................................2511.00101000000000
......................................................................................................................................GATTCTAATCCAG------ATCCCAAGCC..................................................2311.00101000000000
..........................................................................................................................................CTAATCCAG------ATCCCAAGCCAGA...............................................2211.00100000010000
..................................................................................AATACAGG----AGTAGATGTAGAT------------------CTCCAGTCA...............................................................................3011.00100000010000
..............................................................................................................................TCCAGTCAGATTCTAATCCAG------ATCC........................................................2511.00101000000000
.........................................................................................G----AGTAGATGTAGAT------------------CTCCAGTCAGATT...........................................................................2711.00100100000000
.................................................................................................AGATGTAGAT------------------CTCCAGTCAGA.............................................................................2111.00101000000000
..........................................................................................................................................CTAATCCAG------ATCCCAAGCCAGAGACT...........................................2611.00100100000000
......................................................................................................................................GATTCTAATCCAG------ATCCCAAGCCAG................................................2511.00100000010000
..................................................................................................GATGTAGAT------------------CTCCAGTCAGATTC..........................................................................2311.00101000000000
.....................................................................AT-----------AATACAGG----AGTAGATGTAGAT------------------C.......................................................................................2411.00101000000000
.......................................................................................................................................ATTCTAATCCAG------ATCCCAAGCCAGA...............................................2511.00101000000000
.....................................................................AT-----------AATACAGG----AGTAGATGTAGAT------------------CTCC....................................................................................2711.00100100000000
...................................................................................................................................................................AGAGACTACCCTTGAC---------GAT......................1911.00100000010000
......................................................................................................................................................................GACTACCCTTGAC---------GATAAACAGGAC.............2511.00100100000000
.....................................AAGAGAGTCAGCAATAAAGT............................................................................................................................................................2011.00100000010000
................................................................AACGAAT-----------AATACAGG----AGTAGATGTA.............................................................................................................2511.00101000000000
...........................................GTCAGCAATAAAGTCAATTCCAAC..................................................................................................................................................2411.00101000000000
...............................................................................................GTAGATGTAGAT------------------CTCCAGTCAGATT...........................................................................2511.00101000000000
...............................................................................................................................................CCAG------ATCCCAAGCCAGAG..............................................1811.00100100000000
.................................................................................................AGATGTAGAT------------------CTCCAGTCAGATT...........................................................................2311.00101000000000
................................................................................................TAGATGTAGAT------------------CTCCAGTCAG..............................................................................2111.00101000000000
..........................................................................................................................................................................ACCCTTGAC---------GATAAACAGGA..............2011.00101000000000
...............................................................................................GTAGATGTAGAT------------------CTCCAGTCA...............................................................................2111.00101000000000
..............................................................CCAACGAAT-----------AATACAGG----A......................................................................................................................1811.00101000000000
.....................................................................................................GTAGAT------------------CTCCAGTCAGATT...........................................................................1911.00100100000000
droEre2
TCG--ATGTTTTA---------AAAGACATCTCCT-CAAAAGAGTCAGCAATAAAGTCAATTTCAACGAAT-----------AATACAGG----AGTAGATGTAGAT------------------CTCCAGTCAGACTCTAATCCAG------ATCCTAAGCCAGAGACTACCCTTGAC---------GATAA--------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......................................................................................AGG----AGTAGATGTAGAT------------------CTCCAGTCAGACT...........................................................................29112.001200000012
...........................................GTCAGCAATAAAGTCAATTT......................................................................................................................................................2012.0020001010
............................................................................................................................................AATCCAG------ATCCTAAGCCAGAGA.............................................2211.0010100000
...................................................................GAAT-----------AATACAGG----AGTAGATGTA.............................................................................................................2211.0010000010
.............................................................................................................................................ATCCAG------ATCCTAAGCCAGA...............................................1911.0010000010
...................................................................................ATACAGG----AGTAGATGTAGAT------------------C.......................................................................................2111.0010001000
............A---------AAAGACATCTCCT-CAAAAGA..........................................................................................................................................................................2111.0010001000
.....................................................................................................GTAGAT------------------CTCCAGTCAGACTCT.........................................................................2111.0011000000
....................................CAAAAGAGTCAGCAATAAAGTCAATTTC.....................................................................................................................................................2811.0011000000
...........................................GTCAGCAATAAAGTCAATTTCAACGAAT-----------...................................................................................................................................2811.0010100000
.............................................CAGCAATAAAGTCAATTTCAACG.................................................................................................................................................2311.0010000010
...............................................................................................GTAGATGTAGAT------------------CTCCAGTCAGAC............................................................................2411.0010000010
................................................................AACGAAT-----------AATACAGG----AGTAGATGTAGA...........................................................................................................2711.0010001000
.......GTTTTA---------AAAGACATCTCCT-CAAAAGA..........................................................................................................................................................................2611.0010001000
........................................................................................................................................CTCTAATCCAG------ATCCTAAGCC..................................................2111.0010000100
..........................................................................................................................................CTAATCCAG------ATCCTAAGCCA.................................................2011.0010000010
.......................................................................................AGG----AGTAGATGTAGAT------------------CTCC....................................................................................2011.0010000010
.............................................................................................................................................................TAAGCCAGAGACTACCCTTGAC---------GAT......................2511.0011000000
........................................................................................................................................CTCTAATCCAG------ATCCTAAGCCAGA...............................................2411.0010001000
..................................................................CGAAT-----------AATACAGG----AGTAGATGTAG............................................................................................................2411.0010000100
..............................................................................................AGTAGATGTAGAT------------------CTCCAGTCAGACTCT.........................................................................2811.0011000000
..............................................................................................................................................TCCAG------ATCCTAAGCCAGAGACTACCCT......................................2711.0011000000
.....................................................................................ACAGG----AGTAGATGTAGAT------------------........................................................................................1811.0010001000
.......................................................................................................................................ACTCTAATCCAG------ATCCTAAGC...................................................2111.0010000100
...............................................................CAACGAAT-----------AATACAGG----AGTAGATGT..............................................................................................................2511.0011000000
...................................................................................................ATGTAGAT------------------CTCCAGTCAGA.............................................................................1911.0010000100
..................................................................................................GATGTAGAT------------------CTCCAGTCAGACT...........................................................................2211.0011000000

Generated: 06/08/2015 at 02:57 PM