ID:

dpe_632

 Coordinate:

scaffold_10:3363361-3363620 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-26.4 -26.1

Flybase annnotation

CDS [Dper\GL26708-cds]; exon [dper_GLEANR_9215:1]; CDS [Dper\GL26708-cds]; exon [dper_GLEANR_9215:2]; intron [Dper\GL26708-in]

No Repeatable elements found

Sense Strand Reads

--------##########################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CTGTGACAATGTCTGTGGCCGACTGCTGCAAGCGGCCAGAAGACTTTCAGGTGAGTGGAAAGACACGATATCTGCCCAAATTTTTAAACTAACAATGTCCTACTCCACCTTCCCTCAGCTTTGCATCGGCCGCCATGCTCTGCGATGTCTGGGAACTGTGCCGATGGTGCGAACGATTCGTTCGATATTTTTTTTGCAGGGCGACGCATGGCCAACCTTTTAAGGTGCCCCTTACTGCTCGTCCTCCATAGCCTCTGAAAACGGCGCTTGGTGAAGGACCGGTGAAGGCATCTCAGGAGCCGATCTTCAGGAATCGGAGCCGGGTTCTGCTCCGGAGCTGAAGAAGGTACTGTCGGTTGC
***************************************************************************************************************************************************************((..((((..((((((...)))))).............(((((((.(((.(((..((((....)))))))......)))))))))))))).))************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 M021
embryo
 V111
male body		 V042
embryo
 V057
head
...............................................................................................................................................................GCCGATGGTGCGAACGATTCGTT.................................................................................................................................................................................. 23 0 1 8.00 8 8 0 0 0 0
...............................................................................................................................................................GCCGATGGTGCGAACGATTCGT................................................................................................................................................................................... 22 0 1 3.00 3 2 0 0 1 0
........................................................................................................................................................................................................................................TACTGCTCGTCCTCCATAGC............................................................................................................ 20 0 1 3.00 3 0 3 0 0 0
....................................................................................................................................................................................................................................................TCCATAGCCTCTGAAAACGGCGCTT........................................................................................... 25 0 1 3.00 3 3 0 0 0 0
...............................................................................................................................................................GCCGATGGTGCGAACGATTCG.................................................................................................................................................................................... 21 0 1 3.00 3 2 0 1 0 0
..............................................................................................................................................................................GATTCGTTCGATATTTTTTTTGCAGGGC.............................................................................................................................................................. 28 0 1 2.00 2 0 2 0 0 0
.............................................................................................................................................................................................................................................................................................................................................GGAGCTGAAGAAGGTACTGTCGGT... 24 0 1 2.00 2 0 0 2 0 0
....................................................................................................................................................CTGGGAACTGTGCCGATGGTGCGAA........................................................................................................................................................................................... 25 0 1 2.00 2 1 0 0 1 0
...TGACAATGTCTGTGGCCGACTGC.............................................................................................................................................................................................................................................................................................................................................. 23 0 1 2.00 2 2 0 0 0 0
................................................................................................................................................................................................TTTGCAGGGCGACGCATGGCCAACCTT............................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0
..............................................................................................................ACTTTCAGCTTTGCATCGGCCGCCA................................................................................................................................................................................................................................. 25 3 1 1.00 1 1 0 0 0 0
...........................................................................................................................CATCGGCCGCCATGCTCTGCG........................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0
.TGTGACAATGTCTGTGGCCGACTGCT............................................................................................................................................................................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................TGCTCCGGAGCTGAAGAAGGTACTGT....... 26 0 1 1.00 1 1 0 0 0 0
............................................................................................................................................................................................TTTTTTTGCAGGGCGACGCATGGC.................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0
....................................................................................................................................CCATGCTCTGCGATGTCTGGGA.............................................................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0
.............................................................................................................................................................................................................................AAGGTGCCCCTTACTGCTCGTCC.................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0
..........................................................................................................................................................................................................................TTTAAGGTGCCCCTTACTGCTCGTCC.................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
.......................................................................................................................................................................................................................................TTACTGCTCGTCCTCCATAGCCT.......................................................................................................... 23 0 1 1.00 1 1 0 0 0 0
...............................................................................................................................................................................................................................................CGTCCTCCATAGCCTCTGAAAACG................................................................................................. 24 0 1 1.00 1 1 0 0 0 0
.........................................................................................................................................................................................TATTTTTTTTGCAGGGCGACGCA........................................................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0
.TGTGACAAGGTCTGTGGCCGACTGC.............................................................................................................................................................................................................................................................................................................................................. 25 1 1 1.00 1 1 0 0 0 0
.......................................................................................................................................TGCTCTGCGATGTCTGGGAACTGT......................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0
.......................................................................................................................................TGCTCTGCGATGTCTGGGAACTG.......................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0
....................................................................................................................................................................................................................................................TCCATAGCCTCTGAAAACGGCGCTTG.......................................................................................... 26 0 1 1.00 1 1 0 0 0 0
...TGACAATGTCTGTGGCCGACTGCTG............................................................................................................................................................................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0
......CAATGTCTGTGGCCGACTGCTGCAAA........................................................................................................................................................................................................................................................................................................................................ 26 1 1 1.00 1 1 0 0 0 0
...................................................................................................................................................................................GTTCGATATTTTTTTTGCAGGGCGACG.......................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
..........................................................................................................................................................................................TATTTTTTAGCAGGGCGACGCATGGC.................................................................................................................................................... 26 3 1 1.00 1 1 0 0 0 0
........................................................................................................................................................................................................................................................................CGCTTGGTGAAGGACCGGTGAAGGC....................................................................... 25 0 1 1.00 1 1 0 0 0 0
................................................................................................................................................................................................................................................................................................CATCTCAGGAGCCGATCTTCAGGAA............................................... 25 0 1 1.00 1 1 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................TCTGCTCCGGAGCTGAAGAAGGTACT......... 26 0 1 1.00 1 1 0 0 0 0
..............................................................................................................ACTTTCAGCTTTGCATCGGCCGC................................................................................................................................................................................................................................... 23 3 2 1.00 2 2 0 0 0 0
..............................................................................................................................................................................................................................................................................................GGCATCTCAGGAGCCGATCTTCAGGAA............................................... 27 0 1 1.00 1 1 0 0 0 0
...TGACAATGTCTGTGGCCGACTGCT............................................................................................................................................................................................................................................................................................................................................. 24 0 1 1.00 1 0 1 0 0 0
...........................................................................................................................................................................................TTTTTTTTGCAGGGCGACGCATG...................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................TTCTGCTCCGGAGCTGAAGAAGG............. 23 0 1 1.00 1 1 0 0 0 0
.............................................................................................................................................................................................................................................................................GGTGAAGGACCGGTGAAGGCATC.................................................................... 23 0 1 1.00 1 1 0 0 0 0
............................................................................................................................................TGCGATGTCTGGGAACTGTG........................................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0
.................................................................................................................................................................................................................................................................................................ATCTCAGGAGCCGATCTTCAGGAATCGG........................................... 28 0 1 1.00 1 1 0 0 0 0
............................................................................................................................................TGCGATGTCTGGGAACTGTGCCGATGG................................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0
....................................................................................TAAACTAACAATGTCCTA.................................................................................................................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0
............................................................................................................................................................................................................................TAAGGTGCCCCTTACTGCTCGTCC.................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0
.........................................................................................................................................................................................................................TTTTAAGGTGCCCCTTACTGCTCGTCC.................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
............................................................................................................................................................................................................................TAAGGTGCCCCTTACTGCTCGTT..................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0
......CAATGTCTGTGGCCGACTGCTG............................................................................................................................................................................................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................TCCGGAGCAGAAGAAGGTACTGTCGGT... 27 1 1 1.00 1 1 0 0 0 0
.................................................................................................................................CCGCCATGCTCTGCGATGTC................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0
........................................................................................................................................................................................................................................................TAGCCTCTGAAAACGGCGCTTG.......................................................................................... 22 0 1 1.00 1 1 0 0 0 0
............................................................................................................................................................................................................................TAAGGTGCCCCTTACTGCTCGTCCTCC................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0
...............................................................................................................................................................GCCGATGGTGCGAACGATTCGTTC................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0
............................CAAGCGGCCAGAAGACTTTCAGCT.................................................................................................................................................................................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0
...............................................................................................................................................................GCCGATGGTGCGAACGATTCGTTCG................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0
...........................................................................................................................................................................................TTTTTTTTGCAGGGCGACGCATGGCCA.................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0
............................CAAGCGGCCAGAAGACTTTCAGCTT................................................................................................................................................................................................................................................................................................................... 25 2 4 0.75 3 3 0 0 0 0
..................CCGACTGCTGCAAGCGGCCAG................................................................................................................................................................................................................................................................................................................................. 21 0 12 0.50 6 6 0 0 0 0
.TGTGACAATGTCTGTGGCCGACTG............................................................................................................................................................................................................................................................................................................................................... 24 0 2 0.50 1 1 0 0 0 0
.TGTGACAATGTCTGTGGCCGAC................................................................................................................................................................................................................................................................................................................................................. 22 0 2 0.50 1 1 0 0 0 0
................................................................................................................................................................CCGATGGTGCGAACGATTCGT................................................................................................................................................................................... 21 0 2 0.50 1 1 0 0 0 0
................................................................................................................................................................CCGATGGTGCGAACGATTCGTTC................................................................................................................................................................................. 23 0 2 0.50 1 1 0 0 0 0
..............................................................................................................ACTTTCAGCTTTGCATCGGCCGCC.................................................................................................................................................................................................................................. 24 3 2 0.50 1 1 0 0 0 0
................................................................................................................................................................CCGATGGTGCGAACGATTCGTT.................................................................................................................................................................................. 22 0 2 0.50 1 1 0 0 0 0
..............................................................................................................................................................................................................................................................................GTGAAGGCGCGGTGAAGG........................................................................ 18 2 4 0.25 1 0 0 1 0 0
..................CCGACTGCTGCAAGCGGCCA.................................................................................................................................................................................................................................................................................................................................. 20 0 14 0.21 3 3 0 0 0 0
...............................................................................................................CTTTCAGCTTTGCATCGGC...................................................................................................................................................................................................................................... 19 2 5 0.20 1 0 1 0 0 0
..................................................................................................................................................................................................................................................................AAACGTCGCATGGTAAAGGA.................................................................................. 20 3 5 0.20 1 0 0 0 0 1
..................................................................................................................................................................................................................................................................................................................TCAGAAACCGGAGCCGGG.................................... 18 2 5 0.20 1 0 0 0 0 1
.................................................................CGATATCTGCCCAAATTATTAGACT.............................................................................................................................................................................................................................................................................. 25 2 12 0.17 2 2 0 0 0 0
.....................................................................................................................................................................................................................................................................................ACCGCTGAAAGCATCTAAG................................................................ 19 3 14 0.14 2 2 0 0 0 0
..........................................................................................................................................................................................................................................................................CTTAGTGGCGGACCGGTG............................................................................ 18 3 20 0.10 2 0 0 0 0 2
..........................................................................................................................................................................................................................................................................CTTAGTGGAGGACGGGTGA........................................................................... 19 3 11 0.09 1 0 0 1 0 0
...................................................................................................................CAGCTTTGCATCGGCCGCC.................................................................................................................................................................................................................................. 19 0 12 0.08 1 1 0 0 0 0
..................CCGACTTCTGCAAGCGGCCAG................................................................................................................................................................................................................................................................................................................................. 21 1 13 0.08 1 1 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................................AGTAGGTACGGTCGGGTGC 19 3 15 0.07 1 0 0 0 0 1
...................CGACTGCTGCAAGCGGCCA.................................................................................................................................................................................................................................................................................................................................. 19 0 17 0.06 1 1 0 0 0 0
..................CCGACTGCTGCAAGCGGCC................................................................................................................................................................................................................................................................................................................................... 19 0 17 0.06 1 1 0 0 0 0
................................................................................................................CCTCAGCTCTGCAGCGGGC..................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0
..................................................................................................................CAAGCTTTGCATCGGCCGT................................................................................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

GACACTGTTACAGACACCGGCTGACGACGTTCGCCGGTCTTCTGAAAGTCCACTCACCTTTCTGTGCTATAGACGGGTTTAAAAATTTGATTGTTACAGGATGAGGTGGAAGGGAGTCGAAACGTAGCCGGCGGTACGAGACGCTACAGACCCTTGACACGGCTACCACGCTTGCTAAGCAAGCTATAAAAAAAACGTCCCGCTGCGTACCGGTTGGAAAATTCCACGGGGAATGACGAGCAGGAGGTATCGGAGACTTTTGCCGCGAACCACTTCCTGGCCACTTCCGTAGAGTCCTCGGCTAGAAGTCCTTAGCCTCGGCCCAAGACGAGGCCTCGACTTCTTCCATGACAGCCAACG
************************************************************************************************************((..((((..((((((...)))))).............(((((((.(((.(((..((((....)))))))......)))))))))))))).))*************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 V111
male body		 M021
embryo
 V057
head
 V042
embryo
.................................................CCACTCACCTTTCTGTGCTATAGACG............................................................................................................................................................................................................................................................................................. 26 0 18 3.39 61 58 1 0 0 2
................................................TCCACTCACCTTTCTGTGCTATAGACG............................................................................................................................................................................................................................................................................................. 27 0 17 0.53 9 8 0 1 0 0
....................................................................................................................................................................ACCGCGCGTGCTAAGCAA.................................................................................................................................................................................. 18 2 10 0.50 5 0 0 5 0 0
.................................................CCACTCACCTTTCTGTGCTATAGAC.............................................................................................................................................................................................................................................................................................. 25 0 18 0.50 9 9 0 0 0 0
.................................................................................................................................................................GCTACCACGCTTGCTAAGCA................................................................................................................................................................................... 20 0 2 0.50 1 1 0 0 0 0
....................................................................................................................................................................ACCACGCTTGCTAAGCAAGCTATA............................................................................................................................................................................ 24 0 2 0.50 1 1 0 0 0 0
.......................................................................................................................AAACGTAGGCGTCGGTAAGAG............................................................................................................................................................................................................................ 21 3 5 0.40 2 0 2 0 0 0
.............................................................................................................................................................................................................................................GAGGAGGAGGTATCGGAG......................................................................................................... 18 1 3 0.33 1 0 1 0 0 0
...................................................ACTCACCTTTCTGTGCTATAGACG............................................................................................................................................................................................................................................................................................. 24 0 18 0.28 5 5 0 0 0 0
......................................................................................................................................................................................................................CGGAAAATTCCAGGGGGAAGG............................................................................................................................. 21 3 4 0.25 1 0 0 0 1 0
.............................................................................................................AAGGCAGTGGAAACGTCGCCG...................................................................................................................................................................................................................................... 21 3 5 0.20 1 1 0 0 0 0
..................................................CACTCACCTTTCTGTGCTATAGACG............................................................................................................................................................................................................................................................................................. 25 0 18 0.17 3 3 0 0 0 0
............................................................................................................................................................................................................................................CGAGGAGGAGGTATCGGAGG........................................................................................................ 20 2 9 0.11 1 0 1 0 0 0
.................................................CCACTCACCTTTCTGTGTTATAGACG............................................................................................................................................................................................................................................................................................. 26 1 19 0.11 2 2 0 0 0 0
.....................................................................................TCGGATTGCTACAGGATGA................................................................................................................................................................................................................................................................ 19 3 19 0.11 2 0 1 1 0 0
.......................................................................................................................................................................................................................GGAAAAATCCAGGGGGAAGG............................................................................................................................. 20 3 11 0.09 1 0 0 0 1 0
...............................................GTCCACTCACCTTTCTGTGCTAT.................................................................................................................................................................................................................................................................................................. 23 0 11 0.09 1 1 0 0 0 0
...............................................GTCCACTCACCTATCTGTGCT.................................................................................................................................................................................................................................................................................................... 21 1 11 0.09 1 1 0 0 0 0
...............................................GTCCACTCACCTGTCTGTGCT.................................................................................................................................................................................................................................................................................................... 21 1 11 0.09 1 1 0 0 0 0
...............................................GTCCACTCACCTTTCTGTGCT.................................................................................................................................................................................................................................................................................................... 21 0 11 0.09 1 1 0 0 0 0
..................GGCTGACGACGTTCGCCGGT.................................................................................................................................................................................................................................................................................................................................. 20 0 14 0.07 1 1 0 0 0 0
................................................TCCACTCACCTTTCTGTGCTATAGAC.............................................................................................................................................................................................................................................................................................. 26 0 17 0.06 1 1 0 0 0 0
................................................TCCACTCACCTTTCTGTGCTA................................................................................................................................................................................................................................................................................................... 21 0 17 0.06 1 1 0 0 0 0
.................................................CCACTCGCCTTTCTGTGCTATAGACG............................................................................................................................................................................................................................................................................................. 26 1 18 0.06 1 1 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................TGGCCCAAGACAAGGCCTT....................... 19 3 19 0.05 1 0 0 0 0 1
............................................................TCTTTGCTATAAACGGGTCT........................................................................................................................................................................................................................................................................................ 20 3 20 0.05 1 0 0 0 1 0
.........................................................................................................................................................................................................................................TGCCGAGCAGGAAGTATG............................................................................................................. 18 3 20 0.05 1 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_10:3363311-3363670 + dpe_632 CTGTGACAATGTCTGTGGCCGACTGCTGCAAGCGGCCAGAAGACTTTCAG---------------GTGAGTGGA-A-----A--GACACGATATCTGCCC---------AAA---TT-TTT--AA-ACTAACAATGTCCT----ACTC-----C-A-CCTTCCCTCAGCTTTGCAT--CGGCCGCCATGCTCTGCGATGTCTGGG--AACTGTGCCGATGGTGCGAACGATTCGTTCGATATTTTTTTTGCAGGGCGACGCATGGCC-----AACCTTTTAAGGTG-CCCCTTACTGCTCGTCCTCCATAGCCTCTGAAAACGGCGCTTGGTGAAGGACCGGTGAAGGCATCTC------AGGAGCCGAT---CTTCAGGAATCGGAGCC-GGGT--------TCTGCTCCGGAGCTGAAGAAGGTACTGTCGGTTGC
dp5 4_group4:4320814-4321173 + CTGTGACAATGCCTGTGGCCGACTGCTGCAAGCGGCCAGAAGACTTTCAG---------------GTGAGTGGA-A-----A--GACACGATATCTGCCC---------AAA---TT-CTT--AA-ACTAACAATATCCT----ACTC-----C-A-CCTTCCCTCAGCTTTGCAT--CGGCCGCCCTGCTCTGCGATGGCTGGG--AACTGTGCCGATGGTGCGAACGATTCGTTCGATATTTTTTTTGCAGGGCCACGCATGGCCCAT---ACGCA-TAAGGTG------TACTGCTCGTCCTTCATAGCCTCTGAAAACGGCGCGTGGTGAAGGACCGGTGAAGGCATCTCCGCCAGAGGCGCCGG-----TTGAGGAATCAGAGCC-GGGG--------CCTGCTCCGGAGCTGAAGAAGGTACTGTCGGTTGC
droWil2 scf2_1100000004514:2831651-2831892 + -------------TGAGGCTGACTGCTGCAAGAGACCTGGGGAGTTCCAGTGTCCCATCAATAAGGTAAGACTA-A-----A--AAAGAGGTGTCCTATG---------AAA---TG-CA-------AAAAGATTAATG--CAATTTT--CGCC-A-TTCTCCTTTAGCTATGCATTCCCGCCGCCTTGCTCTGTGATAACTGGGAGAATTGTGCCGATGGTGCTGATGAATCACCTGACATTTG-CCTACAA--CGTCGCATGGCTCCAGCTTCGGA-TAAGCTGGCC-TTTA------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12963:15917654-15917810 - -------------AACAAT---------------------------TTAAAGCTCCGCCAACAGCGC--GTCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCGTCGCCACTAAACACGGGACGGGTCGA--GTCCAAGACCAAAATCGA------AGAAGCGGCTGTGCCCCAAGAGACGGAGACCGAGATGGATATGGGTGCACCGGAGGTAAAAATAGCGACAGCTCCTGA
droMoj3 scaffold_6496:26315418-26315617 + -------------TGAAGCAGACTGCTGCAAGCGACCAGGTGAATTTCAATGTCCCATAAATAAGGTAAGGAAA-CGAGTG-CC-----------TTTTTA---TCAAGG--A---TT-----------------AT-------TGTAAA---A-A-GCTTTTTGTAGCTTTGCATCTCAGCGGCCCTACTCTGTGATGGCTGGGAAAACTGTGCTGATGGAGCTGATGAATCTGTGGACATTTG-CCTACAG--CGACGTATGGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15112:4826282-4826494 + --------------GAAGCAGACTGCTGCAAGAGGCCGGGTGAATTTCAGTGTCCCATCAATAAGGTGGGTATA--------TATGTG--------TATGT------CGAAA---CT-TGT--AT-ATAAATATTAACA--TTAATTT--C--G-AATAATCCAACAGCTTTGCATTTCGACTGCGCTTCTTTGCGATGGTTGGGAGAACTGCGCAGATGGTGCCGACGAGTCTGCGGATATTTG-TGTGCAG--CGTCGTATGGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13266:16645310-16645514 - --------------GAAGCGGACTGTTGCAAGCGTCCTGGCGAGTTCCAGTGTCCCATCAATAAGGTGAGTTCCATGGACT-TT-----------CTTCTA---GGAAGG--A---TC---A------G-TCA--------TTAATGT--C--C-C-ATATCCTTTAGCTTTGTATATCCGCCGAATTGCTCTGCGATGGCTGGGAGAACTGTGCCGATGGAGCTGACGAATCCTCGGAGATCTG-CCTGCAA--CGCCGCATGGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396384:753848-754049 - --------------GAAGCGGACTGTTGCAAGCGTCCGGGAGAGTTCCAGTGTCCCATTAATAAGGTGAGTTTG--------TAG-TC-------CTTTCA------AGA--GACGTT---A------T-GTA---CTAA----TCTT-----C-C-CCATCCTTCAGCTTTGTATATCCGCCGATCTGCTCTGCGATGGCTGGGAGAACTGTGCCGATGGAGCTGATGAGTCCTCGGAAATCTG-CCTCCAA--CGACGCATGGCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302277:493255-493291 + -------------TGAGGCGGATTGCTGCAAGAGGCCAGGGGAGTTTCAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000454039:150809-151011 - --------------GAAGCCGATTGCTGCAAGCGACCAGGGGAGTTCCAGTGTCCCATTAATAAGGTAAGTGTA--------TT-----------ATATCAATA---C-AAT---ATA---ACAA-ATT-GTAATAATTT-------------A-T-ATCTATTTCAGCTGTGTATTTCCGCCGCCTTGCTTTGCGATGGCTGGGAGAACTGCGCCGATGGAGCCGATGAATCCTCGGACATTTG-CCTGCAG--CGTCGCATGGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000491282:573720-573930 - --------------GAGGCGGATTGCTGTAAGCGCCCGGGGGAGTTCCAGTGCCCCATTAATAAGGTGAGTGTG-TGTGTG-TT-----------TTAGTG------CGA--A-TG-----ACGAA-CT-TTGTTAACTC----TGTTAA---T-A-CACTCCTACAGCTGTGTATTTCGGCCGCCCTGCTCTGCGATGGCTGGGAAAACTGCGCCGATGGAGCCGACGAATCCTCGGACATTTG-CCTGCAG--CGTCGCATGGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000759836:22256-22459 + ----------------GGCGGATTGTTGTAAGCGCCCAGGGGAGTTTCAATGTCCCATTAATAAGGTGAGAGTG--------ATG-TT--------TAACT------CGA--AGTA-----AAGAA-CT-TCTTTGACAC----AGCT-----A-T-AATTCTTTCAGCTGTGTATTTCGGCCGCCCTGCTATGTGATGGCTGGGAGAACTGCGCCGATGGAGCCGATGAATCCTCCGACATTTG-CCTGCAG--CGTCGCATGGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302291:830846-831046 + --------------GAAGCGGATTGTTGTAAGCGGCCAGGGGAGTTTCAGTGTCCCATTAATAAGGTGAGTTCG--------CT-----------TTACCA------CAA--AGGG-----GAGAAAT--TGTATAACTC----AGTA-----A-T-AA---TTCTAGCTCTGTATATCGGCTGCCCTCCTCTGCGATGGCTGGGAAAATTGCGCCGATGGAGCCGACGAATCCTCAGACATTTG-CCTGCAG--CGTCGCATGGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415379:514376-514580 - -------------TGAGGCCGACTGTTGTAAGCGGCCAGGGGAGTTTCAGTGTCCCATCAATAAGGTGAGTCTG--------TT-----------TAACCA------GAA--AGAG-----GTGAA-CT-TTTATAACAT----AGTT-----T-T-AACTCTTTTAGCTCTGCATCTCCGCCGCCCTGCTCTGCGATGGCTGGGAGAATTGCGCCGACGGAGCCGATGAATCCTCAGACATTTG-CATGCAG--CGTCGCATGGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409758:384901-385106 + -------------TGAGGCGGATTGTTGTAAGCGGTCAGGCGAGTTTCAATGTCCTATTAATAAGGTGAGTGTT--------TT-----------TGTTTA------AAA--CTTT-----ATGAAAT--TGATTAATGT----AGTT-----ATA-AATTCATTTAGCTCTGCATCTCTGCCGCCTTGCTCTGCGATGGTTGGGAAAACTGTGCCGATGGAGCCGATGAATCCTCCGATATTTG-CCTGCAG--CGTCGCATGGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chr2R:9342647-9342852 - -------------TGAAGCCGATTGTTGCAAGCGACCAGGGGAGTTCCAGTGTCCCATTAACAAGGTATGTTG---------TTA-GT--------TACCA------CAA--ACAG-----CTGAA-TT-GCTTTAACTC----ATTT-----G-A-AAATCTTTTAGCTCTGCATCTCGGCCGCACTGCTCTGCGATGGATGGGAGAACTGCGCCGATGGAGCTGATGAATCCTCGGATATCTG-CCTGCAA--CGCCGCATGGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 2r:10005618-10005848 - -------------TGAAGCCGATTGTTGCAAGCGGCCAGGGGAGTTCCAGTGTCCCATTAACAAGGTAAGTTGG--------TAT-TT--------TAACA------CCA--ACAC-----CTGAG-TT-ACA-TAATTA----ATTT-----G-A-AAATCTTTTAGCTCTGCATCTCGGCCGCCTTGCTCTGCGATGGCTGGGAGAACTGCGCCGATGGAGCCGATGAATCCTCGGATATCTG-CCTACAG--CGTCGCATGGCACCTGCAACCGACAAACGTG-CC-TT-------------------------------------------------------------------------------------------------------------------------------------------------T
droSec2 scaffold_1:6861743-6861951 - -------------TGAAGCCGATTGTTGCAAGCGGCCAGGGGAGTTCCAGTGTCCCATTAACAAGGTAAGTTTG--------TCT-TT--------TATCA------CCA---CAC-----ATGAG-TT-GCA-TAATTAATTAATTT-----G-A-AAATCTTTTAGCTCTGCATCTCGGCCGCCTTGCTCTGCGATGGCTGGGAGAACTGCGCCGATGGAGCCGATGAATCCTCGGATATCTG-CCTGCAG--CGTCGCATGGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 2R:7615960-7616166 + -------------TGAAGCGGATTGTTGCAAACGGCCAGGGGAGTTCCAGTGTCCCATTAATAAGGTAAGTTTC--------TCA-TT--------TACCA------ACA--GCCG-----TTGAA-TT-GTTTTAACTG----ATTT-----T-T-AAATCTTTTAGCTCTGCATCTCGGCCGCCTTGCTCTGTGATGGCTGGGAGAACTGCGCCGACGGAGCCGATGAATCCTCGGATATCTG-CCTTCAG--CGCCGCATGGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4845:16474119-16474328 + -------------TGAAGCGGATTGTTGCAAGCGGCCAGGGGAGTTCCAGTGCCCTATTAATAAGGTAAGTTTG--------TCG-TA--------TACCG------CCA--ACAG-----CTGAG-TT-GCA-TATTAAACGCTTTT-----G-A-AAACCATTTAGCTCTGCATCTCGGCCGCCTTGCTCTGTGATGGCTGGGAGAACTGCGCCGATGGAGCCGATGAATCCTCCGATATCTG-CCAGCAG--CGCCGCATGGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
CTGTGACAATGTCTGTGGCCGACTGCTGCAAGCGGCCAGAAGACTTTCAG---------------GTGAGTGGA-A-----A--GACACGATATCTGCCC---------AAA---TT-TTT--AA-ACTAACAATGTCCT----ACTC-----C-A-CCTTCCCTCAGCTTTGCAT--CGGCCGCCATGCTCTGCGATGTCTGGG--AACTGTGCCGATGGTGCGAACGATTCGTTCGATATTTTTTTTGCAGGGCGACGCATGGCC-----AACCTTTTAAGGTG-CCCCTTACTGCTCGTCCTCCATAGCCTCTGAAAACGGCGCTTGGTGAAGGACCGGTGAAGGCATCTC------AGGAGCCGAT---CTTCAGGAATCGGAGCC-GGGT--------TCTGCTCCGGAGCTGAAGAAGGTACTGTCGGTTGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................................................................................................................................................................................................GCCGATGGTGCGAACGATTCGTT..........................................................................................................................................................................................................2318.008080000
.....................................................................................................................................................................................................................GCCGATGGTGCGAACGATTCGT...........................................................................................................................................................................................................2213.003021000
....................................................................................................................................................................................................................................................................................................TACTGCTCGTCCTCCATAGC..............................................................................................................................2013.003300000
................................................................................................................................................................................................................................................................................................................TCCATAGCCTCTGAAAACGGCGCTT.............................................................................................................2513.003030000
.....................................................................................................................................................................................................................GCCGATGGTGCGAACGATTCG............................................................................................................................................................................................................2113.003020001
....................................................................................................................................................................................................................................GATTCGTTCGATATTTTTTTTGCAGGGC......................................................................................................................................................................................2812.002200000
...........................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCTGAAGAAGGTACTGTCGGT...2412.002000002
........................................................................................................................................................................................................CTGGG--AACTGTGCCGATGGTGCGAA...................................................................................................................................................................................................................2512.002011000
...TGACAATGTCTGTGGCCGACTGC............................................................................................................................................................................................................................................................................................................................................................................................................................2312.002020000
......................................................................................................................................................................................................................................................TTTGCAGGGCGACGCATGGCC-----AACCTT................................................................................................................................................................2711.001010000
.............................................................................................................................................................................CAT--CGGCCGCCATGCTCTGCG..................................................................................................................................................................................................................................................2111.001010000
.TGTGACAATGTCTGTGGCCGACTGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................TGCTCCGGAGCTGAAGAAGGTACTGT.......2611.001010000
..................................................................................................................................................................................................................................................TTTTTTTGCAGGGCGACGCATGGC............................................................................................................................................................................2411.001010000
........................................................................................................................................................................................CCATGCTCTGCGATGTCTGGG--A......................................................................................................................................................................................................................................2211.001010000
........................................................................................................................................................................................................................................................................................AAGGTG-CCCCTTACTGCTCGTCC......................................................................................................................................2311.001010000
.....................................................................................................................................................................................................................................................................................TTTAAGGTG-CCCCTTACTGCTCGTCC......................................................................................................................................2611.001010000
...................................................................................................................................................................................................................................................................................................TTACTGCTCGTCCTCCATAGCCT............................................................................................................................2311.001010000
...........................................................................................................................................................................................................................................................................................................CGTCCTCCATAGCCTCTGAAAACG...................................................................................................................2411.001010000
...............................................................................................................................................................................................................................................TATTTTTTTTGCAGGGCGACGCA................................................................................................................................................................................2311.001010000
...........................................................................................................................................................................................TGCTCTGCGATGTCTGGG--AACTGT.................................................................................................................................................................................................................................2411.001010000
...........................................................................................................................................................................................TGCTCTGCGATGTCTGGG--AACTG..................................................................................................................................................................................................................................2311.001010000
................................................................................................................................................................................................................................................................................................................TCCATAGCCTCTGAAAACGGCGCTTG............................................................................................................2611.001010000
...TGACAATGTCTGTGGCCGACTGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
......CAATGTCTGTGGCCGACTGCTGCAAA......................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
.........................................................................................................................................................................................................................................GTTCGATATTTTTTTTGCAGGGCGACG..................................................................................................................................................................................2711.001010000
....................................................................................................................................................................................................................................................................................................................................CGCTTGGTGAAGGACCGGTGAAGGC.........................................................................................2511.001010000
............................................................................................................................................................................................................................................................................................................................................................CATCTC------AGGAGCCGAT---CTTCAGGAA........................................................2511.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCTCCGGAGCTGAAGAAGGTACT.........2611.001010000
..........................................................................................................................................................................................................................................................................................................................................................GGCATCTC------AGGAGCCGAT---CTTCAGGAA........................................................2711.001010000
...TGACAATGTCTGTGGCCGACTGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
.................................................................................................................................................................................................................................................TTTTTTTTGCAGGGCGACGCATG..............................................................................................................................................................................2311.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................................T--------TCTGCTCCGGAGCTGAAGAAGG.............2311.001010000
.........................................................................................................................................................................................................................................................................................................................................GGTGAAGGACCGGTGAAGGCATC......................................................................................2311.001010000
................................................................................................................................................................................................TGCGATGTCTGGG--AACTGTG................................................................................................................................................................................................................................2011.001010000
.............................................................................................................................................................................................................................................................................................................................................................ATCTC------AGGAGCCGAT---CTTCAGGAATCGG....................................................2811.001010000
................................................................................................................................................................................................TGCGATGTCTGGG--AACTGTGCCGATGG.........................................................................................................................................................................................................................2711.001010000
........................................................................................................................T--AA-ACTAACAATGTCCT----A.....................................................................................................................................................................................................................................................................................................1811.001010000
.......................................................................................................................................................................................................................................................................................TAAGGTG-CCCCTTACTGCTCGTCC......................................................................................................................................2411.001010000
....................................................................................................................................................................................................................................................................................TTTTAAGGTG-CCCCTTACTGCTCGTCC......................................................................................................................................2711.001010000
.......................................................................................................................................................................................................................................................................................TAAGGTG-CCCCTTACTGCTCGTT.......................................................................................................................................2311.001010000
......CAATGTCTGTGGCCGACTGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
.....................................................................................................................................................................................CCGCCATGCTCTGCGATGTC.............................................................................................................................................................................................................................................2011.001010000
....................................................................................................................................................................................................................................................................................................................TAGCCTCTGAAAACGGCGCTTG............................................................................................................2211.001010000
.......................................................................................................................................................................................................................................................................................TAAGGTG-CCCCTTACTGCTCGTCCTCC...................................................................................................................................2711.001010000
.....................................................................................................................................................................................................................GCCGATGGTGCGAACGATTCGTTC.........................................................................................................................................................................................................2411.001010000
.....................................................................................................................................................................................................................GCCGATGGTGCGAACGATTCGTTCG........................................................................................................................................................................................................2511.001010000
.................................................................................................................................................................................................................................................TTTTTTTTGCAGGGCGACGCATGGCC-----A.....................................................................................................................................................................2711.001010000
..................CCGACTGCTGCAAGCGGCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................21120.506060000
.TGTGACAATGTCTGTGGCCGACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................2420.501010000
.TGTGACAATGTCTGTGGCCGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................2220.501010000
......................................................................................................................................................................................................................CCGATGGTGCGAACGATTCGT...........................................................................................................................................................................................................2120.501010000
......................................................................................................................................................................................................................CCGATGGTGCGAACGATTCGTTC.........................................................................................................................................................................................................2320.501010000
......................................................................................................................................................................................................................CCGATGGTGCGAACGATTCGTT..........................................................................................................................................................................................................2220.501010000
..................CCGACTGCTGCAAGCGGCCA................................................................................................................................................................................................................................................................................................................................................................................................................20140.213030000
.....................................................................................................................................................................CAGCTTTGCAT--CGGCCGCC............................................................................................................................................................................................................................................................19120.081010000
...................CGACTGCTGCAAGCGGCCA................................................................................................................................................................................................................................................................................................................................................................................................................19170.061010000
..................CCGACTGCTGCAAGCGGCC.................................................................................................................................................................................................................................................................................................................................................................................................................19170.061010000
dp5
CTGTGACAATGCCTGTGGCCGACTGCTGCAAGCGGCCAGAAGACTTTCAG---------------GTGAGTGGA-A-----A--GACACGATATCTGCCC---------AAA---TT-CTT--AA-ACTAACAATATCCT----ACTC-----C-A-CCTTCCCTCAGCTTTGCAT--CGGCCGCCCTGCTCTGCGATGGCTGGG--AACTGTGCCGATGGTGCGAACGATTCGTTCGATATTTTTTTTGCAGGGCCACGCATGGCCCAT---ACGCA-TAAGGTG------TACTGCTCGTCCTTCATAGCCTCTGAAAACGGCGCGTGGTGAAGGACCGGTGAAGGCATCTCCGCCAGAGGCGCCGG-----TTGAGGAATCAGAGCC-GGGG--------CCTGCTCCGGAGCTGAAGAAGGTACTGTCGGTTGCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................................................................................................................................................................................................................................................................................................................ATCTCCGCCAGAGGCGCCGG-----TTGAGGA.........................................................2711.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................G-----TTGAGGAATCAGAGCC-GGGG--------C..................................2211.0010000001000
.....................................................................................................................................................................................................TGGCTGGG--AACTGTGCCGATGG.........................................................................................................................................................................................................................2211.0010000000010
droWil2
-------------TGAGGCTGACTGCTGCAAGAGACCTGGGGAGTTCCAGTGTCCCATCAATAAGGTAAGACTA-A-----A--AAAGAGGTGTCCTATG---------AAA---TG-CA-------AAAAGATTAATG--CAATTTT--CGCC-A-TTCTCCTTTAGCTATGCATTCCCGCCGCCTTGCTCTGTGATAACTGGGAGAATTGTGCCGATGGTGCTGATGAATCACCTGACATTTG-CCTACAA--CGTCGCATGGCTCCAGCTTCGGA-TAAGCTGGCC-TTTA------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............................CAAGAGACCTGGGGAGTTCCAGTGTCC...............................................................................................................................................................................................................................................................................................................................................................................................2711.00100100
..............................AGAGACCTGGGGAGTTCCAGTGT.................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
.......................................................................................................................................................................................................................................................CTACAA--CGTCGCATGGCTCCAG.......................................................................................................................................................................2211.00100010
.....................................................................................................................................................................................................................................................................ATGGCTCCAGCTTCGGA-TAAGCT.........................................................................................................................................................2311.00100100
...........................................................................................................................................................................................TGCTCTGTGATAACTGGGA........................................................................................................................................................................................................................................1911.00100100
......................................................................................................................................................................................CGCCTTGCTCTGTGATAACTGGGAG.......................................................................................................................................................................................................................................2511.00100010
.......................................................................................................................................................................................................................................................CTACAA--CGTCGCATGGCTC..........................................................................................................................................................................1911.00110000
...............................................................................................................................................................................................................................................................................CTTCGGA-TAAGCTGGCC-TT..................................................................................................................................................1911.00100010
................................................................................................................................................................................................................................................................GTCGCATGGCTCCAGCTTCGGA-TAAGCT.........................................................................................................................................................2811.00101000
droVir3
-------------AACAAT---------------------------TTAAAGCTCCGCCAACAGCGC--GTCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCGTCGCCACTAAACACGGGACGGGTCGA--GTCCAAGACCAAAATCGA------AGAAGCGGCTGTGCCCCAAGAGACGGAGACCGAGATGGATATGGGTGCACCGGAGGTAAAAATAGCGACAGCTCCTGASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................CCAACAGCGC--GTCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCGTCGCC.............................................................................................................................2312.002000002000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................AAATCGA------AGAAGCGGCTGTGC................................................................2111.001100000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................AGACCAAAATCGA------AGAAGCGG......................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
................................................AAAGCTCCGCCAACAGCGC--GTT..............................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000100000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................AAACACGGGACGGGTCGA--GT....................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
................................................AAAGCTCCGCCAACAGCGC--.................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000010000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................CGAGATGGATATGGGTGCACC...........................2111.001000000000000000000000000000000000000000000000000000000000000010
......................................................................................................................................................................................................................................................................................................................GCCACTAAACACGGGACGGGT...........................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................AAGAGACGGAGACCGAGA...........................................1811.001000000000000000000000000000000000000000000000000000000000100000
...................................................................................................................................................................................................................................................................................................................................................................................................GACCGAGATGGATATGGGT................................1911.001000000010000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................AGATGGATATGGGTGCACCGG.........................2111.001000000000000000000000000000000100000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................TGGGTGCACCGGAGGTAA...................1811.001000000000000000000000000000010000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................AGACGGAGACCGAGATGGAT......................................2011.001000000001000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................AAGAGACGGAGACCGAGATG.........................................2011.001000000000000000001000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................GCTGTGCCCCAAGAGACGGAG..................................................2111.001000000000000000000000000000100000000000000000000000000000000000
droMoj3
-------------TGAAGCAGACTGCTGCAAGCGACCAGGTGAATTTCAATGTCCCATAAATAAGGTAAGGAAA-CGAGTG-CC-----------TTTTTA---TCAAGG--A---TT-----------------AT-------TGTAAA---A-A-GCTTTTTGTAGCTTTGCATCTCAGCGGCCCTACTCTGTGATGGCTGGGAAAACTGTGCTGATGGAGCTGATGAATCTGTGGACATTTG-CCTACAG--CGACGTATGGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................................................................................................................................................................................................GATGGCTGGGAAAACTGTGCTGATGG.........................................................................................................................................................................................................................2611.001000001
............................................................................................................GG--A---TT-----------------AT-------TGTAAA---A-A-GCTT.....................................................................................................................................................................................................................................................................................1911.001000010
..............................................................................................................................................................................................TCTGTGATGGCTGGGAAAACTGTGC...............................................................................................................................................................................................................................2511.001001000
...................................................................................C-----------TTTTTA---TCAAGG--A---TT-----------------AT-------TGTA..................................................................................................................................................................................................................................................................................................2211.001010000
.......................................GTGAATTTCAATGTCCCATAA..........................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
......................................................................................................................................................................................................GGCTGGGAAAACTGTGCTGATGGA........................................................................................................................................................................................................................2411.001000001
............................................................................................................................................................................................................GAAAACTGTGCTGATGGAGCT.....................................................................................................................................................................................................................2111.001000100
droGri2
--------------GAAGCAGACTGCTGCAAGAGGCCGGGTGAATTTCAGTGTCCCATCAATAAGGTGGGTATA--------TATGTG--------TATGT------CGAAA---CT-TGT--AT-ATAAATATTAACA--TTAATTT--C--G-AATAATCCAACAGCTTTGCATTTCGACTGCGCTTCTTTGCGATGGTTGGGAGAACTGCGCAGATGGTGCCGACGAGTCTGCGGATATTTG-TGTGCAG--CGTCGTATGGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...........................GCAAGAGGCCGGGTGAATTTCAGTGTCC...............................................................................................................................................................................................................................................................................................................................................................................................2811.00101
droAna3
--------------GAAGCGGACTGTTGCAAGCGTCCTGGCGAGTTCCAGTGTCCCATCAATAAGGTGAGTTCCATGGACT-TT-----------CTTCTA---GGAAGG--A---TC---A------G-TCA--------TTAATGT--C--C-C-ATATCCTTTAGCTTTGTATATCCGCCGAATTGCTCTGCGATGGCTGGGAGAACTGTGCCGATGGAGCTGACGAATCCTCGGAGATCTG-CCTGCAA--CGCCGCATGGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................................................................................................................................................................................................AGCTGACGAATCCTCGGAGATC...................................................................................................................................................................................................2211.001010000
............................................................................................................................................................................................................................................GGAGATCTG-CCTGCAA--CGCCGCATGG.............................................................................................................................................................................2611.001010000
..............................................................................................................................................................................................................GAACTGTGCCGATGGAGCTGAC..................................................................................................................................................................................................................2211.001000010
...........................................GTTCCAGTGTCCCATCAATA.......................................................................................................................................................................................................................................................................................................................................................................................2011.001001000
.....................................................................................................................................................................................................TGGCTGGGAGAACTGTGGG..............................................................................................................................................................................................................................1940.251000100
droBip1
--------------GAAGCGGACTGTTGCAAGCGTCCGGGAGAGTTCCAGTGTCCCATTAATAAGGTGAGTTTG--------TAG-TC-------CTTTCA------AGA--GACGTT---A------T-GTA---CTAA----TCTT-----C-C-CCATCCTTCAGCTTTGTATATCCGCCGATCTGCTCTGCGATGGCTGGGAGAACTGTGCCGATGGAGCTGATGAGTCCTCGGAAATCTG-CCTCCAA--CGACGCATGGCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
-------------TGAGGCGGATTGCTGCAAGAGGCCAGGGGAGTTTCAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
--------------GAAGCCGATTGCTGCAAGCGACCAGGGGAGTTCCAGTGTCCCATTAATAAGGTAAGTGTA--------TT-----------ATATCAATA---C-AAT---ATA---ACAA-ATT-GTAATAATTT-------------A-T-ATCTATTTCAGCTGTGTATTTCCGCCGCCTTGCTTTGCGATGGCTGGGAGAACTGCGCCGATGGAGCCGATGAATCCTCGGACATTTG-CCTGCAG--CGTCGCATGGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
--------------GAGGCGGATTGCTGTAAGCGCCCGGGGGAGTTCCAGTGCCCCATTAATAAGGTGAGTGTG-TGTGTG-TT-----------TTAGTG------CGA--A-TG-----ACGAA-CT-TTGTTAACTC----TGTTAA---T-A-CACTCCTACAGCTGTGTATTTCGGCCGCCCTGCTCTGCGATGGCTGGGAAAACTGCGCCGATGGAGCCGACGAATCCTCGGACATTTG-CCTGCAG--CGTCGCATGGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
----------------GGCGGATTGTTGTAAGCGCCCAGGGGAGTTTCAATGTCCCATTAATAAGGTGAGAGTG--------ATG-TT--------TAACT------CGA--AGTA-----AAGAA-CT-TCTTTGACAC----AGCT-----A-T-AATTCTTTCAGCTGTGTATTTCGGCCGCCCTGCTATGTGATGGCTGGGAGAACTGCGCCGATGGAGCCGATGAATCCTCCGACATTTG-CCTGCAG--CGTCGCATGGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
--------------GAAGCGGATTGTTGTAAGCGGCCAGGGGAGTTTCAGTGTCCCATTAATAAGGTGAGTTCG--------CT-----------TTACCA------CAA--AGGG-----GAGAAAT--TGTATAACTC----AGTA-----A-T-AA---TTCTAGCTCTGTATATCGGCTGCCCTCCTCTGCGATGGCTGGGAAAATTGCGCCGATGGAGCCGACGAATCCTCAGACATTTG-CCTGCAG--CGTCGCATGGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
-------------TGAGGCCGACTGTTGTAAGCGGCCAGGGGAGTTTCAGTGTCCCATCAATAAGGTGAGTCTG--------TT-----------TAACCA------GAA--AGAG-----GTGAA-CT-TTTATAACAT----AGTT-----T-T-AACTCTTTTAGCTCTGCATCTCCGCCGCCCTGCTCTGCGATGGCTGGGAGAATTGCGCCGACGGAGCCGATGAATCCTCAGACATTTG-CATGCAG--CGTCGCATGGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
-------------TGAGGCGGATTGTTGTAAGCGGTCAGGCGAGTTTCAATGTCCTATTAATAAGGTGAGTGTT--------TT-----------TGTTTA------AAA--CTTT-----ATGAAAT--TGATTAATGT----AGTT-----ATA-AATTCATTTAGCTCTGCATCTCTGCCGCCTTGCTCTGCGATGGTTGGGAAAACTGTGCCGATGGAGCCGATGAATCCTCCGATATTTG-CCTGCAG--CGTCGCATGGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
-------------TGAAGCCGATTGTTGCAAGCGACCAGGGGAGTTCCAGTGTCCCATTAACAAGGTATGTTG---------TTA-GT--------TACCA------CAA--ACAG-----CTGAA-TT-GCTTTAACTC----ATTT-----G-A-AAATCTTTTAGCTCTGCATCTCGGCCGCACTGCTCTGCGATGGATGGGAGAACTGCGCCGATGGAGCTGATGAATCCTCGGATATCTG-CCTGCAA--CGCCGCATGGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................TTGTTGCAAGCGACCAGGGGAGTTCCA.....................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
............................................................................................................................................................................................GCTCTGCGATGGATGGGAGAACTGC.................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000001000000000000000000000000000000000
...............................................CAGTGTCCCATTAACAAG.....................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................TGGAGCTGATGAATCCTCGG........................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..............................................................................................................................................................................................................GAACTGCGCCGATGGAGCT.....................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................CGATTGTTGCAAGCGACCAGGGGA...........................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
......................................................................................................................................................................................................................................ATCCTCGGATATCTG-CCTGCAA--CGCA...................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TTGTTGCAAGCGACCAGGGGAGT.........................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................TCCTCGGATATCTG-CCTGCAA--CGCC...................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................CGATGGAGCTGATGAATCCTCGGA.......................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.......................................................................................................................................................................................................GATGGGAGAACTGCGCCGAT...........................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...................................................................................................................................................................................................GATGGATGGGAGAACTGCGCCGATGG.........................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................TCTGCGATGGATGGGAGAACTGCGCC..............................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................GGATGGGAGAACTGCGCCGATGG.........................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
................................................................................................................................................................................................................ACTGCGCCGATGGAGCTGATGAA...............................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................TGGAGCTGATGAATCCTCGGATATCT..................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................ATCTCGGCCGCACTGCTCTGC...................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................CGATGGATGGGAGAACTGCGCCGATG..........................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................GAGAACTGCGCCGATGGAGCT.....................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..................CCGATTGTTGCAAGCGACCAGG..............................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................CAAGCGACCAGGGGAGTTC.......................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................TGGAGCTGATGAATCCTCG.........................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................ATGGGAGAACTGCGCCGATG..........................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................TGCGCCGATGGAGCTGATGG................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.............................................................................................................................................................................CATCTCGGCCGCACTGCTCTGCGATG...............................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................TGCGCCGATGGAGCTGATG.................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
............................................................................................................................................................................................................................GAGCTGATGAATCCTCGGATATC...................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................CCTCGGATATCTG-CCTGC...........................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................GATGGAGCTGATGAATCCTC..........................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.............................................................................................................................................................................................CTCTGCGATGGATGGGAGAACTG..................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................GGCCGCACTGCTCTGCGATGG..............................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................CAGGGGAGTTCCAGTGTCC...............................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..........................................................................................................................................................................................CTGCTCTGCGATGGATGGGA........................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................GATGGGAGAACTGCGCCGATG..........................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.......................................................................................................................................................................................................GATGGGAGAACTGCGCCGATGGA........................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................AACTGCGCCGATGGAGCTGATGAATC.............................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...................................................................................................................................CTTTAACTC----ATTT-----G-A-AAATCTTTTAG..............................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................TCTGCATCTCGGCCGCACTGCTC......................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
-------------TGAAGCCGATTGTTGCAAGCGGCCAGGGGAGTTCCAGTGTCCCATTAACAAGGTAAGTTGG--------TAT-TT--------TAACA------CCA--ACAC-----CTGAG-TT-ACA-TAATTA----ATTT-----G-A-AAATCTTTTAGCTCTGCATCTCGGCCGCCTTGCTCTGCGATGGCTGGGAGAACTGCGCCGATGGAGCCGATGAATCCTCGGATATCTG-CCTACAG--CGTCGCATGGCACCTGCAACCGACAAACGTG-CC-TT-------------------------------------------------------------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................................................................................................................................................................................CGATGAATCCTCGGATATCTG-CCTACAG--C......................................................................................................................................................................................2911.00101000000000000000
.......................TGTTGCAAGCGGCCAGGGGAGT.........................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000001000000
...................................................................................................................................................................................................GATGGCTGGGAGAACTGC.................................................................................................................................................................................................................................1811.00101000000000000000
......................................................................................................................................................................................CGCCTTGCTCTGCGATGG..............................................................................................................................................................................................................................................1811.00100010000000000000
..........................................................................................................................................................................................................................................TCGGATATCTG-CCTACAG--CGT....................................................................................................................................................................................2111.00100000000001000000
droSec2
-------------TGAAGCCGATTGTTGCAAGCGGCCAGGGGAGTTCCAGTGTCCCATTAACAAGGTAAGTTTG--------TCT-TT--------TATCA------CCA---CAC-----ATGAG-TT-GCA-TAATTAATTAATTT-----G-A-AAATCTTTTAGCTCTGCATCTCGGCCGCCTTGCTCTGCGATGGCTGGGAGAACTGCGCCGATGGAGCCGATGAATCCTCGGATATCTG-CCTGCAG--CGTCGCATGGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................................................................................................................................................................................CGCCTTGCTCTGCGATGGCTGGGAGA......................................................................................................................................................................................................................................2611.0010010
.................................................................................................................................................................................................................................GATGAATCCTCGGATATCTG-C...............................................................................................................................................................................................2111.0010010
........................................................................................................................................................................................................CTGGGAGAACTGCGCCGATGGAGCCG....................................................................................................................................................................................................................2611.0010010
...................................................................................................................................................................................................................GCGCCGATGGAGCCGATGAAT..............................................................................................................................................................................................................2111.0010001
droYak3
-------------TGAAGCGGATTGTTGCAAACGGCCAGGGGAGTTCCAGTGTCCCATTAATAAGGTAAGTTTC--------TCA-TT--------TACCA------ACA--GCCG-----TTGAA-TT-GTTTTAACTG----ATTT-----T-T-AAATCTTTTAGCTCTGCATCTCGGCCGCCTTGCTCTGTGATGGCTGGGAGAACTGCGCCGACGGAGCCGATGAATCCTCGGATATCTG-CCTTCAG--CGCCGCATGGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................................................................................................................................................................AACTGCGCCGACGGAGCCG....................................................................................................................................................................................................................1911.00101000000000
......................................................................................................................................................................................................GGCTGGGAGAACTGCGCC..............................................................................................................................................................................................................................1811.00100000010000
..............................................................................................................................................................................................................................GCCGATGAATCCTCGGATATCT..................................................................................................................................................................................................2211.00101000000000
...............................................................................................................................................................................................CTGTGATGGCTGGGAGAACT...................................................................................................................................................................................................................................2011.00100000010000
......................................................................................................................................................................................CGCCTTGCTCTGTGATGGCTGGGA........................................................................................................................................................................................................................................2411.00110000000000
droEre2
-------------TGAAGCGGATTGTTGCAAGCGGCCAGGGGAGTTCCAGTGCCCTATTAATAAGGTAAGTTTG--------TCG-TA--------TACCG------CCA--ACAG-----CTGAG-TT-GCA-TATTAAACGCTTTT-----G-A-AAACCATTTAGCTCTGCATCTCGGCCGCCTTGCTCTGTGATGGCTGGGAGAACTGCGCCGATGGAGCCGATGAATCCTCCGATATCTG-CCAGCAG--CGCCGCATGGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................................................................................................................................................................................GTGATGGCTGGGAGAACTGCGCC..............................................................................................................................................................................................................................2311.0010000100
..............................................................................................................................................................................................TCTGTGATGGCTGGGAGAACTGCGC...............................................................................................................................................................................................................................2511.0010100000
...................................................................................................................................................................................................GATGGCTGGGAGAACTGCGCC..............................................................................................................................................................................................................................2111.0010000100
........................................................................................................................................................................................................................GATGGAGCCGATGAATCCTCC.........................................................................................................................................................................................................2111.0010000010

Generated: 06/08/2015 at 02:56 PM