ID:

dpe_63

 Coordinate:

scaffold_4:2566985-2567069 +

 Confidence:

Known Ortholog

 Class:

Testes-restricted

 Genomic Locale:

intergenic

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-26.9 -26.9 -26.8

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
(CATATA)nSimple_repeatSimple_repeat+

Sense Strand Reads

TGTATGTATGTGTAGTGCGGAACAATTAAAATTTCTGCCCATCTATTTTCTGGACGGAGTTTGCACAATACGTATTTATATACATACATATATACATATGTAATTTGTTAACATATTGGCAGTCTTCGGCCTGAAAATGTTTGTACATTCCTACTGATTCGATTTATAACTGAAAGTTCTGAGAT

***********************************....((..(((((((.((.(((((.((((.(((((.((....(((....(((((((....)))))))...)))..)).))))))))).))))).)).)))))))..))......************************************ 		Read size # Mismatch Hit Count Total Norm Total M042

female body

 V111

male body		 V042

embryo

 M021

embryo

 V050

head

 V057

head
..................................................TGGACGGAGTTTGCACAATACGT................................................................................................................ 23 0 1 772.00 772 342 305 117 8 0 0
..................................................TGGACGGAGTTTGCACAATACG................................................................................................................. 22 0 1 491.00 491 168 312 11 0 0 0
................................................................................................................ATATTGGCAGTCTTCGGCCTGA................................................... 22 0 1 195.00 195 153 9 1 32 0 0
................................................................................................................ATATTGGCAGTCTTCGGCCTG.................................................... 21 0 1 61.00 61 40 3 2 15 1 0
................................................................................................................ATATTGGCAGTCTTCGGCCT..................................................... 20 0 1 38.00 38 27 2 1 8 0 0
..................................................TGGACGGAGTTTGCACAATAC.................................................................................................................. 21 0 1 38.00 38 10 25 1 0 2 0
..................................................TGGACGGAGTTTGCACAATA................................................................................................................... 20 0 1 37.00 37 1 36 0 0 0 0
................................................................................................................ATATTGGCAGTCTTCGGCCTGAAA................................................. 24 0 1 34.00 34 28 0 0 6 0 0
...................................................GGACGGAGTTTGCACAATACGT................................................................................................................ 22 0 1 30.00 30 30 0 0 0 0 0
...................................................GGACGGAGTTTGCACAATACG................................................................................................................. 21 0 1 19.00 19 19 0 0 0 0 0
..................................................TGGACGGAGTTTGCACAATACGTT............................................................................................................... 24 1 1 17.00 17 2 15 0 0 0 0
................................................................................................................ATATTGGCAGTCTTCGGCCTGAA.................................................. 23 0 1 15.00 15 9 0 0 6 0 0
.................................................................................................................TATTGGCAGTCTTCGGCCTGA................................................... 21 0 1 13.00 13 13 0 0 0 0 0
..................................................TGGACGGAGTTTGCACAATACGA................................................................................................................ 23 1 1 12.00 12 11 0 1 0 0 0
................................................................................................................ATATTGGCAGTCTTCGGCC...................................................... 19 0 1 10.00 10 5 0 0 5 0 0
..................................................TGGACGGAGTTTGCACAATACGTAA.............................................................................................................. 25 1 1 10.00 10 8 2 0 0 0 0
................................................................................................................ATATTGGCGGTCTTCGGCCTGA................................................... 22 1 1 9.00 9 9 0 0 0 0 0
..................................................TGGACGGAGTTTGCACAAT.................................................................................................................... 19 0 1 8.00 8 1 7 0 0 0 0
..................................................TGGACGGAGTTTGCACAATACGTAAA............................................................................................................. 26 2 1 8.00 8 8 0 0 0 0 0
..................................................TGGACGGAGTTTGCACAATACGTA............................................................................................................... 24 0 1 7.00 7 7 0 0 0 0 0
.................................................................................................................TATTGGCAGTCTTCGGCCTGAAA................................................. 23 0 1 7.00 7 7 0 0 0 0 0
..................................................TGGACGGAGTTTGCACAATAA.................................................................................................................. 21 1 1 7.00 7 0 7 0 0 0 0
..................................................TGGACGGAATTTGCACAATACGT................................................................................................................ 23 1 1 6.00 6 6 0 0 0 0 0
................................................................................................................ATATTGGCAGTCTTCGGC....................................................... 18 0 1 6.00 6 2 0 0 4 0 0
................................................................................................................ATATTGGCAGTCTTCGGCCTGAAAA................................................ 25 0 1 6.00 6 5 0 0 1 0 0
................................................................................................................ATATTGGCAGTCTTCGGCCTGT................................................... 22 1 1 5.00 5 3 1 0 1 0 0
..................................................TGGACGGACTTTGCACAATACGT................................................................................................................ 23 1 1 5.00 5 5 0 0 0 0 0
................................................................................................................ATATTGGCAGTCTTCGGCCTGG................................................... 22 1 1 5.00 5 1 0 0 4 0 0
..................................................TGGACGGAGTTTGCACAATACGTC............................................................................................................... 24 1 1 4.00 4 0 4 0 0 0 0
..................................................TGGACGGAGTTTGCACAATACGG................................................................................................................ 23 1 1 4.00 4 1 0 1 2 0 0
.................................................................................................................TATTGGCAGTCTTCGGCCTG.................................................... 20 0 1 4.00 4 4 0 0 0 0 0
...................................................GGACGGAGTTTGCACAATACGA................................................................................................................ 22 1 1 4.00 4 4 0 0 0 0 0
................................................................................................................ATATTGGCAGTCTTCGGCCTGAAAAA............................................... 26 1 1 4.00 4 3 0 0 1 0 0
................................................................................................................ATATTGGCAGTCTTCGGCCC..................................................... 20 1 1 3.00 3 0 1 0 2 0 0
..................................................TGGACGGAGTTTTCACAATACGT................................................................................................................ 23 1 1 3.00 3 2 1 0 0 0 0
................................................................................................................ATATTGGCCGTCTTCGGCCTGA................................................... 22 1 1 3.00 3 3 0 0 0 0 0
................................................................................................................ATATTGGCAGTCTTCGGCCA..................................................... 20 1 1 3.00 3 3 0 0 0 0 0
....................................................GACGGAGTTTGCACAATACGT................................................................................................................ 21 0 1 3.00 3 3 0 0 0 0 0
..................................................TGGACGGATTTTGCACAATACGT................................................................................................................ 23 1 1 3.00 3 3 0 0 0 0 0
...............................................................................................................CATATTGGCAGTCTTCGGCC...................................................... 20 0 1 3.00 3 0 0 0 3 0 0
..................................................TGGACGGAGTTTGCACAATACA................................................................................................................. 22 1 1 3.00 3 2 0 1 0 0 0
..................................................TGGACGGAGTTTGCACCATACGT................................................................................................................ 23 1 1 3.00 3 0 0 3 0 0 0
.................................................................................................................TATTGGCAGTCTTCGGCCT..................................................... 19 0 1 2.00 2 2 0 0 0 0 0
.................................................................................................................TATTGGCAGTCTTCGGCCTGAA.................................................. 22 0 1 2.00 2 2 0 0 0 0 0
..................................................TGGACGGAGTTCGCACAATACGT................................................................................................................ 23 1 1 2.00 2 0 1 1 0 0 0
................................................................................................................ATATTTGCAGTCTTCGGCCT..................................................... 20 1 1 2.00 2 1 0 0 1 0 0
................................................................................................................ATATTGGCTGTCTTCGGCCTGA................................................... 22 1 1 2.00 2 2 0 0 0 0 0
..................................................CGGACGGAGTTTGCACAATACG................................................................................................................. 22 1 1 2.00 2 0 2 0 0 0 0
................................................................................................................ATATTGGCAGTCTTCGGCCTTT................................................... 22 2 1 2.00 2 0 1 0 0 0 1
..................................................TGGACGGAGTTTGCACAATACGTAAAA............................................................................................................ 27 3 1 2.00 2 2 0 0 0 0 0
................................................................................................................ATATTGGCAGTCTTCGGCCTGTAA................................................. 24 1 1 2.00 2 0 0 0 2 0 0
................................................................................................................ATATTGGCAGTCTTCGGCCTGAAT................................................. 24 1 1 2.00 2 0 0 0 2 0 0
................................................................................................................ATATTGGCAGTCTTCGGCA...................................................... 19 1 1 2.00 2 2 0 0 0 0 0
..................................................TGGACGGAGCTTGCACAATACG................................................................................................................. 22 1 1 2.00 2 1 1 0 0 0 0
................................................TCTGGACGGAGTTTGCACAATACA................................................................................................................. 24 1 1 2.00 2 0 0 0 2 0 0
..................................................TGGACGGAGTTTGCACAATACCT................................................................................................................ 23 1 1 1.00 1 1 0 0 0 0 0
................................................................................................................ATATTGGCAGTCTTCGGCAA..................................................... 20 2 1 1.00 1 1 0 0 0 0 0
................................................................................................................ATATTGGCAGTCCTCGGCCT..................................................... 20 1 1 1.00 1 0 0 0 1 0 0
................................................................................................................ATATTGGCAGACTTCGGCCTGAA.................................................. 23 1 1 1.00 1 1 0 0 0 0 0
..................................................TGGACGGAGTTTGCACAATACGC................................................................................................................ 23 1 1 1.00 1 0 1 0 0 0 0
................................................................................................................ATATTGGCAGTCTTCGGCAAAAAA................................................. 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TGGACGGAGTTTGCACAATACC................................................................................................................. 22 1 1 1.00 1 0 1 0 0 0 0
...................................................GGACGGAGTTTGCACAAT.................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................................AATATTGGCAGTCTTCGGCCTGAA.................................................. 24 1 1 1.00 1 1 0 0 0 0 0
................................................................................................................ATATTGGCAGTCTTCGGCCTAAAA................................................. 24 1 1 1.00 1 1 0 0 0 0 0
..................................................TGGACGGAGTTTGCACACTACGT................................................................................................................ 23 1 1 1.00 1 0 0 1 0 0 0
..................................................................................................................ATTGGCAGTCTTCGGCCTGAA.................................................. 21 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................ATATTGGCAGTCTTCGGCCCG.................................................... 21 1 1 1.00 1 0 0 0 1 0 0
...............................................................................................................GATATTGGCAGTCTTCGGCCTGA................................................... 23 1 1 1.00 1 1 0 0 0 0 0
................................................................................................................ATATTGGCAGTCTTCGGCCCGT................................................... 22 2 1 1.00 1 0 0 0 0 1 0
..................................................TGGACGGAGTTTGCATAATACG................................................................................................................. 22 1 1 1.00 1 0 1 0 0 0 0
................................................................................................................ATATAGGCAGTCTTCGGCCCG.................................................... 21 2 1 1.00 1 0 0 1 0 0 0
..................................................TGGACGGAGTTTGCACAATACGTCTTTAAGTA....................................................................................................... 32 3 1 1.00 1 0 0 1 0 0 0
..................................................TGGACGGAGTTTGTTCAATACGT................................................................................................................ 23 2 1 1.00 1 0 0 1 0 0 0
..................................................TGGGCGGAGTTTGCACAATACGT................................................................................................................ 23 1 1 1.00 1 1 0 0 0 0 0
..................................................TGGACGGCGTTTGCACACTCCGT................................................................................................................ 23 3 1 1.00 1 0 0 1 0 0 0
...................................................GGACGGAGTTTGCACAATAC.................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0
.................................................AGGGACGGAGTTTGCACAATACGT................................................................................................................ 24 2 1 1.00 1 1 0 0 0 0 0
...................................................GGACGGAGTTTGCACAATACGTAAA............................................................................................................. 25 2 1 1.00 1 1 0 0 0 0 0
................................................................................................................ATATTGGCAGTCTTCGGCCTGAGA................................................. 24 1 1 1.00 1 1 0 0 0 0 0
................................................................................................................ATATTGGCAGTCTTCGGCCAC.................................................... 21 2 1 1.00 1 1 0 0 0 0 0
...................................................TGACGGAGTTTGCACAATACGT................................................................................................................ 22 1 1 1.00 1 0 1 0 0 0 0
..................................................TGGACGGAGTTTCCACAATACG................................................................................................................. 22 1 1 1.00 1 0 1 0 0 0 0
..................................................TTGACGGAGTTTGCACAATACGTAAA............................................................................................................. 26 3 1 1.00 1 1 0 0 0 0 0
...................................................GGACGGAGCTTGCACAATACG................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................................TATTGGCAATCTTCGGCCTGAA.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
................................................................................................................ATATTGGCAGTCTTCTGCCTG.................................................... 21 1 2 1.00 2 1 0 1 0 0 0
...................................................GGGCGGAGTTTGCACAATACGT................................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
..................................................TGGACGGAGTGTGCACAATACG................................................................................................................. 22 1 1 1.00 1 0 0 1 0 0 0
.....................................................ACGGAGTTTGCACAATACG................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0
.....................................................ACGGAGTTTGCACAATACGT................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................ATATTGGCAGTCTTCGGCCTGTTAA................................................ 25 2 1 1.00 1 1 0 0 0 0 0
.........................................................................................................TGTTAACATATTGGCAGTCTTCG......................................................... 23 0 1 1.00 1 0 1 0 0 0 0
..................................................TGGACGGAGTTTGCACAATACGTTG.............................................................................................................. 25 2 1 1.00 1 1 0 0 0 0 0
..................................................TGGACGGAGTATGCACAATACGT................................................................................................................ 23 1 1 1.00 1 0 1 0 0 0 0
................................................................................................................ATATTGGCAGTCTTCGGCCTGAAAAT............................................... 26 0 1 1.00 1 0 0 0 1 0 0
..................................................AGGACGGAGTTTGCACAATACG................................................................................................................. 22 1 1 1.00 1 0 1 0 0 0 0
..................................................TGGACGGAGTTTGCCCAATACGT................................................................................................................ 23 1 1 1.00 1 0 0 1 0 0 0
.................................................................................................................TATTGGCAGTCTTCGGCCTGATG................................................. 23 2 1 1.00 1 1 0 0 0 0 0
................................................................................................................ATATTGGCAGTCTTCGGCCTC.................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..................................................GGGACGGAGCTTGCACCATACGT................................................................................................................ 23 3 1 1.00 1 0 0 1 0 0 0
..................................................TGGACGGAGTTTGCACAATG................................................................................................................... 20 1 1 1.00 1 0 1 0 0 0 0
................................................................................................................ATATTGGCAGTCTTCGGCG...................................................... 19 1 1 1.00 1 0 1 0 0 0 0
..................................................TGGACGGACTTTGCACAATACG................................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0
................................................................................................................ATATTGGCAGTCTTCGGCCTGAAG................................................. 24 1 1 1.00 1 0 0 0 1 0 0
................................................................................................................ATATTGGCGGTCTTCGGCCTGCAA................................................. 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TGGACGGAGTTTGTACAATTCGT................................................................................................................ 23 2 1 1.00 1 0 0 1 0 0 0
..................................................AGGACGGAGTTTGCACAATACGT................................................................................................................ 23 1 1 1.00 1 0 1 0 0 0 0
....................................................GACGGAGTTTGCACAATACG................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................ATATTGGCGGTCTTCGGCCTGAAAA................................................ 25 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................................GATATTGGCAGTCTTCGGCCTGG................................................... 23 2 1 1.00 1 0 0 0 1 0 0
................................................................................................................ATATTGGTCGTCTTCGGCCTGA................................................... 22 2 1 1.00 1 1 0 0 0 0 0
................................................................................................................ATATTGGCAGTCTTCGGCCTGAG.................................................. 23 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................................GATTGGCAGTCTTCGGCCTG.................................................... 20 1 1 1.00 1 1 0 0 0 0 0
..................................................TGGACGGAGTTTGCACAATACGTTT.............................................................................................................. 25 1 1 1.00 1 0 1 0 0 0 0
................................................................................................................ATATTGGCCGTCTTCGGCCTGAAA................................................. 24 1 1 1.00 1 1 0 0 0 0 0
..................................................TGGACGGAGCTTGCACAATACGT................................................................................................................ 23 1 1 1.00 1 0 0 1 0 0 0
..................................................TGGACGGCGTTTGCCCAAGACGT................................................................................................................ 23 3 1 1.00 1 0 0 1 0 0 0
..................................................TGGACGGAGTTTGCACAATAAG................................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0
..................................................TGGACGGAGTTTGCACAATATGT................................................................................................................ 23 1 1 1.00 1 1 0 0 0 0 0
..................................................TGGACGGAGTTTATACAATA................................................................................................................... 20 2 1 1.00 1 0 0 1 0 0 0
................................................................................................................ATATTGGCAGTCTTCGGCCTGAAAAAAA............................................. 28 3 1 1.00 1 1 0 0 0 0 0
................................................TCTGGACGGAGTTTGCACAATACGT................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0
..................................................TGGACGGAGTTTGCACAAAA................................................................................................................... 20 1 1 1.00 1 0 1 0 0 0 0
..................................................TGGACGGAGATTGCACAATACG................................................................................................................. 22 1 1 1.00 1 0 1 0 0 0 0
..................................................TGGACGGATTTTGCACAATACG................................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................................TATTGGCAGTCTTCGGCC...................................................... 18 0 1 1.00 1 1 0 0 0 0 0
..................................................TAGACGGAGTTTGCACAATACG................................................................................................................. 22 1 1 1.00 1 0 1 0 0 0 0
..................................................TGGACGGAGTATGCACAATACG................................................................................................................. 22 1 1 1.00 1 0 0 1 0 0 0
..................................................TGGACGGAGCTGGCACAATACGT................................................................................................................ 23 2 1 1.00 1 0 0 0 0 0 1
..................................................TGGACGGAGTTTGCACAATT................................................................................................................... 20 1 1 1.00 1 0 1 0 0 0 0
..................................................TGGACGGAGTTTGCACAAA.................................................................................................................... 19 1 1 1.00 1 0 1 0 0 0 0
................................................................................................................ATATTGGCAGTCTTCGGCCTA.................................................... 21 1 1 1.00 1 0 0 0 0 1 0
................................................................................................................ATATTGGCAGTCTTCGGAC...................................................... 19 1 1 1.00 1 0 0 0 1 0 0
................................................................................................................ATATTGGCAGTCCTCGGCCTGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
................................................................................................................ATATTGGCTGTCTTCGGCCTG.................................................... 21 1 1 1.00 1 1 0 0 0 0 0
................................................................................................................CTATTGGCAGTCTTCGGCCTGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
................................................................................................................ATATTGGCAGTCTTCGGTCTGA................................................... 22 1 1 1.00 1 0 1 0 0 0 0
.............................................................................................................AACATATTGGCAGTCTTCGGC....................................................... 21 0 1 1.00 1 0 0 0 1 0 0
................................................................................................................ATATTGGCGGTCTTCGGCCTG.................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................................AATATTGGCAGTCTTCGGCCTG.................................................... 22 1 1 1.00 1 1 0 0 0 0 0
................................................................................................................ATATTCGCAGTCTTCGGCCT..................................................... 20 1 1 1.00 1 0 0 0 1 0 0
................................................................................................................ATATCGGCAGTCTTCGGCCTG.................................................... 21 1 1 1.00 1 0 1 0 0 0 0
..................................................................................................................ATTGGCAGTCTTCGGCCTGAAA................................................. 22 0 1 1.00 1 1 0 0 0 0 0
..................................................TGGACGGAGATTGCACCATACTT................................................................................................................ 23 3 1 1.00 1 0 0 1 0 0 0
................................................................................................................ATATTGGCAGTCTTCGGCCTGTT.................................................. 23 2 1 1.00 1 1 0 0 0 0 0
..................................................TGGACGGGGTTTGCACAATACG................................................................................................................. 22 1 1 1.00 1 0 1 0 0 0 0
..................................................TGGACGGAGCTTGCTCAATACGT................................................................................................................ 23 2 1 1.00 1 0 0 1 0 0 0
..................................................TGGACGGAGTTTGCACAATACGTTC.............................................................................................................. 25 2 1 1.00 1 0 0 0 0 1 0
..................................................TGGACGGAATTTGCACAATAC.................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0
................................................................................................................ATATTGGCAGTCTTCGGCCGG.................................................... 21 1 1 1.00 1 0 0 0 1 0 0
...................................................................................................................TTGGCAGTCTTCGGCCTGA................................................... 19 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................ATATTGGCAGTCTTCCGCCTTG................................................... 22 3 1 1.00 1 0 0 1 0 0 0
................................................................................................................GTATTGGCAGTCTTCGGCCTA.................................................... 21 2 1 1.00 1 1 0 0 0 0 0
..................................................TGGACGGAGTTTGCACAATCTTT................................................................................................................ 23 3 1 1.00 1 0 1 0 0 0 0
..................................................TGGACGGAATTTGCACAATACG................................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................................TATTGGCAGTCTTCGACCTGA................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..................................................TGGGCGGAGTTTGCACAATACG................................................................................................................. 22 1 1 1.00 1 0 1 0 0 0 0
...............................................................................................................TATATTGGCAGTCTTCGGCCTGA................................................... 23 1 1 1.00 1 1 0 0 0 0 0
................................................................................................................ATATTGGCAGTCTTCGGCCCC.................................................... 21 2 1 1.00 1 1 0 0 0 0 0
................................................................................................................ATATTGGCAGTCTTCGGTT...................................................... 19 2 5 0.80 4 0 4 0 0 0 0
................................................................................................................ATATTGGCAGTCTTCGTCTT..................................................... 20 2 2 0.50 1 0 1 0 0 0 0
................................................................................................................ATATTGGCAGTCTTCGGAA...................................................... 19 2 2 0.50 1 0 1 0 0 0 0
................................................................................................................ATATTGGCAGTCTTCGGCAAAA................................................... 22 3 2 0.50 1 1 0 0 0 0 0
...............................................TTCTGGAGGGAGTATGCACG...................................................................................................................... 20 3 3 0.33 1 0 0 0 0 0 1
................................................................................................................ATATTGGCTGTCTTCGGCCAA.................................................... 21 3 3 0.33 1 1 0 0 0 0 0
..................................................TGGACGGAGTTTGCAAAAA.................................................................................................................... 19 2 4 0.25 1 0 1 0 0 0 0
................................................................................................................ATATTGGCAGTCTTCGGTTT..................................................... 20 2 4 0.25 1 0 1 0 0 0 0
.................................................................................................................TATTGGCAGGCTTTTGCCTGA................................................... 21 3 5 0.20 1 0 0 1 0 0 0
................................................................................................................ATATTGGCAGTCTTCGGAAA..................................................... 20 3 11 0.09 1 0 1 0 0 0 0

Anti-sense strand reads

ACATACATACACATCACGCCTTGTTAATTTTAAAGACGGGTAGATAAAAGACCTGCCTCAAACGTGTTATGCATAAATATATGTATGTATATATGTATACATTAAACAATTGTATAACCGTCAGAAGCCGGACTTTTACAAACATGTAAGGATGACTAAGCTAAATATTGACTTTCAAGACTCTA

************************************....((..(((((((.((.(((((.((((.(((((.((....(((....(((((((....)))))))...)))..)).))))))))).))))).)).)))))))..))......*********************************** 		Read size # Mismatch Hit Count Total Norm Total M021

embryo

 V042

embryo

 V057

head
............................TTTAAAGGCGGGTAGATGA.......................................................................................................................................... 19 2 4 0.50 2 2 0 0
............................TTTAAAGGCGGGTAGATG........................................................................................................................................... 18 2 10 0.20 2 0 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droPer2 scaffold_4:2566935-2567119 + dpe_63 confident TGTATGTATGTGTAGTGCGGAACAATTAAAATTTCTGCCCATCTATTTTCTGGACGGAGTTTGCACAATACGTATTTA----TATACATACATATATACATATGTAATTTGTTAACATATTGGCAGTCTTCGGCCTGAAAATGTTTGTACATTCCTACTGATTCGATTTATAACTGAAAGTTCTGAGAT
dp5 3:8680153-8680341 + dps-mir-2506 Known_mirbase TGTATGTATGTGTAGTGCGGAACAATTAAAATTTCTGCCCATCTATTTTCTGGACGGAGTTTGCACAATACGTATTTATATACATACATACATATGTATATATGTAATTTGTTAACATATTGGCAGTCTTCGGCCTGAAAATGTTTGTACATTCCTACTGATTCGATTTATAACTGAAAGTTCTGAGAT
droEle1 scf7180000491201:738201-738234 - TACA--------------------------------------------------------------------TATGTA----CATACATACATACATACATATGTA-----------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
TGTATGTATGTGTAGTGCGGAACAATTAAAATTTCTGCCCATCTATTTTCTGGACGGAGTTTGCACAATACGTATTTA----TATACATACATATATACATATGTAATTTGTTAACATATTGGCAGTCTTCGGCCTGAAAATGTTTGTACATTCCTACTGATTCGATTTATAACTGAAAGTTCTGAGATSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
..................................................TGGACGGAGTTTGCACAATACGT....................................................................................................................231772.00772834211700305
..................................................TGGACGGAGTTTGCACAATACG.....................................................................................................................221491.0049101681100312
....................................................................................................................ATATTGGCAGTCTTCGGCCTGA...................................................221195.00195321531009
....................................................................................................................ATATTGGCAGTCTTCGGCCTG....................................................21161.006115402103
....................................................................................................................ATATTGGCAGTCTTCGGCCT.....................................................20138.00388271002
..................................................TGGACGGAGTTTGCACAATAC......................................................................................................................21138.003801012025
..................................................TGGACGGAGTTTGCACAATA.......................................................................................................................20137.00370100036
....................................................................................................................ATATTGGCAGTCTTCGGCCTGAAA.................................................24134.00346280000
...................................................GGACGGAGTTTGCACAATACGT....................................................................................................................22130.00300300000
...................................................GGACGGAGTTTGCACAATACG.....................................................................................................................21119.00190190000
..................................................TGGACGGAGTTTGCACAATACGTT...................................................................................................................24117.00170200015
....................................................................................................................ATATTGGCAGTCTTCGGCCTGAA..................................................23115.0015690000
.....................................................................................................................TATTGGCAGTCTTCGGCCTGA...................................................21113.00130130000
..................................................TGGACGGAGTTTGCACAATACGA....................................................................................................................23112.00120111000
....................................................................................................................ATATTGGCAGTCTTCGGCC......................................................19110.0010550000
..................................................TGGACGGAGTTTGCACAATACGTAA..................................................................................................................25110.0010080002
..................................................TGGACGGAGTTTGCACAAT........................................................................................................................1918.008010007
..................................................TGGACGGAGTTTGCACAATACGTAAA.................................................................................................................2618.008080000
..................................................TGGACGGAGTTTGCACAATACGTA...................................................................................................................2417.007070000
.....................................................................................................................TATTGGCAGTCTTCGGCCTGAAA.................................................2317.007070000
..................................................TGGACGGAGTTTGCACAATAA......................................................................................................................2117.007000007
....................................................................................................................ATATTGGCAGTCTTCGGC.......................................................1816.006420000
....................................................................................................................ATATTGGCAGTCTTCGGCCTGAAAA................................................2516.006150000
....................................................................................................................ATATTGGCAGTCTTCGGCCTGT...................................................2215.005130001
....................................................................................................................ATATTGGCAGTCTTCGGCCTGG...................................................2215.005410000
..................................................TGGACGGAGTTTGCACAATACGTC...................................................................................................................2414.004000004
..................................................TGGACGGAGTTTGCACAATACGG....................................................................................................................2314.004211000
.....................................................................................................................TATTGGCAGTCTTCGGCCTG....................................................2014.004040000
...................................................GGACGGAGTTTGCACAATACGA....................................................................................................................2214.004040000
....................................................................................................................ATATTGGCAGTCTTCGGCCTGAAAAA...............................................2614.004130000
....................................................................................................................ATATTGGCAGTCTTCGGCCC.....................................................2013.003200001
....................................................................................................................ATATTGGCAGTCTTCGGCCA.....................................................2013.003030000
....................................................GACGGAGTTTGCACAATACGT....................................................................................................................2113.003030000
...................................................................................................................CATATTGGCAGTCTTCGGCC......................................................2013.003300000
..................................................TGGACGGAGTTTGCACAATACA.....................................................................................................................2213.003021000
.....................................................................................................................TATTGGCAGTCTTCGGCCT.....................................................1912.002020000
.....................................................................................................................TATTGGCAGTCTTCGGCCTGAA..................................................2212.002020000
....................................................................................................................ATATTGGCAGTCTTCGGCCTTT...................................................2212.002000011
..................................................TGGACGGAGTTTGCACAATACGTAAAA................................................................................................................2712.002020000
....................................................................................................................ATATTGGCAGTCTTCGGCCTGAAT.................................................2412.002200000
....................................................................................................................ATATTGGCAGTCTTCGGCA......................................................1912.002020000
................................................TCTGGACGGAGTTTGCACAATACA.....................................................................................................................2412.002200000
....................................................................................................................ATATTGGCAGTCTTCGGCAA.....................................................2011.001010000
..................................................TGGACGGAGTTTGCACAATACGC....................................................................................................................2311.001000001
..................................................TGGACGGAGTTTGCACAATACC.....................................................................................................................2211.001000001
...................................................GGACGGAGTTTGCACAAT........................................................................................................................1811.001010000
......................................................................................................................ATTGGCAGTCTTCGGCCTGAA..................................................2111.001010000
...................................................GGACGGAGTTTGCACAATAC......................................................................................................................2011.001010000
...................................................GGACGGAGTTTGCACAATACGTAAA.................................................................................................................2511.001010000
....................................................................................................................ATATTGGCAGTCTTCGGCCAC....................................................2111.001010000
.....................................................ACGGAGTTTGCACAATACG.....................................................................................................................1911.001010000
.....................................................ACGGAGTTTGCACAATACGT....................................................................................................................2011.001010000
.............................................................................................................TGTTAACATATTGGCAGTCTTCG.........................................................2311.001000001
..................................................TGGACGGAGTTTGCACAATACGTTG..................................................................................................................2511.001010000
....................................................................................................................ATATTGGCAGTCTTCGGCCTGAAAAT...............................................2611.001100000
.....................................................................................................................TATTGGCAGTCTTCGGCCTGATG.................................................2311.001010000
....................................................................................................................ATATTGGCAGTCTTCGGCCTC....................................................2111.001010000
..................................................TGGACGGAGTTTGCACAATG.......................................................................................................................2011.001000001
....................................................................................................................ATATTGGCAGTCTTCGGCG......................................................1911.001000001
....................................................................................................................ATATTGGCAGTCTTCGGCCTGAAG.................................................2411.001100000
....................................................GACGGAGTTTGCACAATACG.....................................................................................................................2011.001010000
....................................................................................................................ATATTGGCAGTCTTCGGCCTGAG..................................................2311.001010000
....................................................................................................................ATATTGGCAGTCTTCGGCCTGAAAAAAA.............................................2811.001010000
................................................TCTGGACGGAGTTTGCACAATACGT....................................................................................................................2511.001010000
.....................................................................................................................TATTGGCAGTCTTCGGCC......................................................1811.001010000
..................................................TGGACGGAGTTTGCACAATT.......................................................................................................................2011.001000001
..................................................TGGACGGAGTTTGCACAAA........................................................................................................................1911.001000001
....................................................................................................................ATATTGGCAGTCTTCGGCCTA....................................................2111.001000100
.................................................................................................................AACATATTGGCAGTCTTCGGC.......................................................2111.001100000
......................................................................................................................ATTGGCAGTCTTCGGCCTGAAA.................................................2211.001010000
....................................................................................................................ATATTGGCAGTCTTCGGCCTGTT..................................................2311.001010000
..................................................TGGACGGAGTTTGCACAATACGTTC..................................................................................................................2511.001000100
.......................................................................................................................TTGGCAGTCTTCGGCCTGA...................................................1911.001010000
....................................................................................................................ATATTGGCAGTCTTCGGCCCC....................................................2111.001010000
....................................................................................................................ATATTGGCAGTCTTCGGTT......................................................1950.804000004
....................................................................................................................ATATTGGCAGTCTTCGGAA......................................................1920.501000001
....................................................................................................................ATATTGGCAGTCTTCGGAAA.....................................................20110.091000001
dp5
TGTATGTATGTGTAGTGCGGAACAATTAAAATTTCTGCCCATCTATTTTCTGGACGGAGTTTGCACAATACGTATTTATATACATACATACATATGTATATATGTAATTTGTTAACATATTGGCAGTCTTCGGCCTGAAAATGTTTGTACATTCCTACTGATTCGATTTATAACTGAAAGTTCTGAGATSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
..................................................TGGACGGAGTTTGCACAATACG.....................................................................................................................2217558.00755831677678541379435145829
..................................................TGGACGGAGTTTGCACAATACGT....................................................................................................................2316837.006837340754595647156745164430
....................................................................................................................ATATTGGCAGTCTTCGGCCTGA...................................................2211704.0017041414289551121262750
..................................................TGGACGGAGTTTGCACAATAC......................................................................................................................211813.008130751031795225991
....................................................................................................................ATATTGGCAGTCTTCGGCCTG....................................................211585.00585225121836094110
..................................................TGGACGGAGTTTGCACAATA.......................................................................................................................201520.00520010302212353750
...................................................GGACGGAGTTTGCACAATACGT....................................................................................................................221360.00360035900000100
....................................................................................................................ATATTGGCAGTCTTCGGCCT.....................................................201295.0029511259143530000
...................................................GGACGGAGTTTGCACAATACG.....................................................................................................................211200.00200018900000560
..................................................TGGACGGAGTTTGCACAATACGA....................................................................................................................231198.0019801091022913620
....................................................................................................................ATATTGGCAGTCTTCGGCCTGAAA.................................................241192.001920166190000610
.....................................................................................................................TATTGGCAGTCTTCGGCCTGA...................................................211188.00188017950001210
..................................................TGGACGGAGTTTGCACAATAA......................................................................................................................211173.001730300003901310
..................................................TGGACGGAGTTTGCACAATACGC....................................................................................................................231157.001570211031000410
..................................................TGGACGGAGTTTGCACAATACGTC...................................................................................................................24192.0092050100250610
....................................................................................................................ATATTGGCAGTCTTCGGCCTGT...................................................22190.0090352208001240
..................................................TGGACGGAGTTTGCACAATACGTAA..................................................................................................................25187.008706900201960
..................................................TGGACGGAGTTTGCACAATACGTAAA.................................................................................................................26176.007607200200110
................................................TCTGGACGGAGTTTGCACAATACG.....................................................................................................................24169.00690111030225270
....................................................................................................................ATATTGGCAGTCTTCGGCC......................................................19164.0064235261000000
..................................................TGGACGGAGTTTGCACAATT.......................................................................................................................20160.0060010100130450
....................................................................................................................ATATTGGCAGTCTTCGGCCTGAA..................................................23156.005604620100340
....................................................................................................................ATATTGGCAGTCTTCGGCCTGAAAA................................................25153.005305120000000
..................................................TGGACGGAGTTTGCACAAT........................................................................................................................19151.0051060000105300
..................................................TGGACGGAGTTTGCACAATACGTT...................................................................................................................24148.00480182120111130
..................................................TGGACGGAGTTTGCACAATACGTA...................................................................................................................24146.004602720215360
..................................................TGGACGGAGTTTGCACAATACT.....................................................................................................................22145.004504101010380
.....................................................................................................................TATTGGCAGTCTTCGGCCTG....................................................20142.004224000000000
..................................................TGGACGGAGTTTGCACAATACA.....................................................................................................................22129.002901500104090
....................................................................................................................ATATTGGCAGTCTTCGGCCA.....................................................20129.002902900000000
.....................................................................................................................TATTGGCAGTCTTCGGCCT.....................................................19127.002702700000000
..................................................TGGACGGAGTTTGCACAATACC.....................................................................................................................22126.002600110140190
.................................................CTGGACGGAGTTTGCACAATACG.....................................................................................................................23126.002601000104290
....................................................................................................................ATATTGGCAGTCTTCGGCAA.....................................................20122.002202110000000
.....................................................................................................................TATTGGCAGTCTTCGGCCTGAA..................................................22121.002101910001000
..................................................TGGACGGAGTTTGCACAATAAA.....................................................................................................................22121.002100000020190
..................................................TGGACGGAGTTTGCACAATACGTATT.................................................................................................................26118.001800000023130
................................................TCTGGACGGAGTTTGCACAATAC......................................................................................................................23118.00180360000360
..................................................TGGACGGAGTTTGCACAATACGTAT..................................................................................................................25117.001703000010130
.................................................CTGGACGGAGTTTGCACAATACGT....................................................................................................................24117.00170920203100
..................................................TGGACGGAGTTTGCACAA.........................................................................................................................18117.001700000002150
....................................................GACGGAGTTTGCACAATACGT....................................................................................................................21116.001601600000000
...................................................GGACGGAGTTTGCACAATAC......................................................................................................................20115.001501000000050
.....................................................................................................................TATTGGCAGTCTTCGGCCTGAAA.................................................23114.001401400000000
...................................................GGACGGAGTTTGCACAATACGA....................................................................................................................22114.001401400000000
....................................................................................................................ATATTGGCAGTCTTCGGCCC.....................................................20113.001320110000000
......................................................................................................................ATTGGCAGTCTTCGGCCTGA...................................................20111.001101100000000
....................................................................................................................ATATTGGCAGTCTTCGGCCTGAAAAA...............................................26111.001101000000100
....................................................................................................................ATATTGGCAGTCTTCGGCCTGTT..................................................23111.00110600000050
..................................................TGGACGGAGTTTGCACAATACGG....................................................................................................................23111.00110020601110
..................................................TGGACGGAGTTTGCACAATACGTAAAA................................................................................................................27110.00100800200000
....................................................................................................................ATATTGGCAGTCTTCGGCA......................................................19110.00100910000000
...................................................GGACGGAGTTTGCACAATACGTAAA.................................................................................................................2519.0090900000000
................................................TCTGGACGGAGTTTGCACAA.........................................................................................................................2019.0090200004030
................................................TCTGGACGGAGTTTGCACAAT........................................................................................................................2119.0090400100040
....................................................GACGGAGTTTGCACAATACG.....................................................................................................................2018.0080800000000
....................................................................................................................ATATTGGCAGTCTTCGGCCTGAAAAAA..............................................2718.0080800000000
....................................................................................................................ATATTGGCAGTCTTCGGCCTGC...................................................2218.0080121310000
....................................................................................................................ATATTGGCAGTCTTCGGCCTGAAG.................................................2418.0080710000000
..................................................TGGACGGAGTTTGCACAATTT......................................................................................................................2117.0070000004030
.....................................................................................................................TATTGGCAGTCTTCGGCCTGT...................................................2116.0060600000000
..................................................TGGACGGAGTTTGCACAATAT......................................................................................................................2116.0060000000060
....................................................................................................................ATATTGGCAGTCTTCGGC.......................................................1816.0062110001010
..................................................TGGACGGAGTTTGCACAATACGTTA..................................................................................................................2516.0060300100020
................................................TCTGGACGGAGTTTGCACAATA.......................................................................................................................2216.0060100000230
....................................................................................................................ATATTGGCAGTCTTCGGCCTT....................................................2116.0061410000000
..................................................TGGACGGAGTTTGCACAATAAAA....................................................................................................................2325.501101000000100
..................................................TGGACGGAGTTTGCACAATACGTTAA.................................................................................................................2615.0050400000010
.....................................................................................................................TATTGGCAGTCTTCGGCCTGAAAA................................................2415.0050500000000
................................................TCTGGACGGAGTTTGCACAATACGA....................................................................................................................2515.0050100000310
..................................................TGGACGGAGTTTGCACAATTTT.....................................................................................................................2215.0050000001040
....................................................................................................................ATATTGGCAGTCTTCGGCCTA....................................................2115.0050410000000
..................................................TGGACGGAGTTTGCACAATACCC....................................................................................................................2314.0040010000030
..................................................TGGACGGAGTTTGCACAATATT.....................................................................................................................2214.0040000000040
..................................................TGGACGGAGTTTGCACAATACGTAG..................................................................................................................2514.0040000000130
...................................................................................................................CATATTGGCAGTCTTCGGCCTGA...................................................2314.0040301000000
................................................................................................................TAACATATTGGCAGTCTTCG.........................................................2014.0040100003000
.....................................................ACGGAGTTTGCACAATACGT....................................................................................................................2014.0040400000000
....................................................................................................................ATATTGGCAGTCTTCGGCCTGAT..................................................2314.0040300000010
..................................................TGGACGGAGTTTGCACAATG.......................................................................................................................2014.0040000001030
..................................................TGGACGGAGTTTGCACAAA........................................................................................................................1914.0040000001030
....................................................................................................................ATATTGGCAGTCTTCGGCCTTT...................................................2214.0040210000010
..................................................TGGACGGAGTTTGCACAATTA......................................................................................................................2114.0040000000040
...................................................GGACGGAGTTTGCACAATACGTAA..................................................................................................................2414.0040400000000
................................................TCTGGACGGAGTTTGCACAATAA......................................................................................................................2313.0030000001020
....................................................GACGGAGTTTGCACAATACGA....................................................................................................................2113.0030300000000
..................................................TGGACGGAGTTTGCACAATACGGT...................................................................................................................2413.0030000000030
......................................................CGGAGTTTGCACAATACGT....................................................................................................................1913.0030300000000
................................................................................................................TAACATATTGGCAGTCTTCGG........................................................2113.0030000003000
.....................................................................................................................TATTGGCAGTCTTCGGCC......................................................1813.0030300000000
......................................................................................................................ATTGGCAGTCTTCGGCCTGAAA.................................................2213.0030300000000
..................................................TGGACGGAGTTTGCACAATACGTATTT................................................................................................................2713.0030300000000
.......................................................................................................................TTGGCAGTCTTCGGCCTGA...................................................1913.0030200000100
..................................................TGGACGGAGTTTGCACAATC.......................................................................................................................2013.0030100001010
......................................................................................................................ATTGGCAGTCTTCGGCCT.....................................................1813.0030300000000
..................................................TGGACGGAGTTTGCACAATACGTG...................................................................................................................2413.0030300000000
..................................................TGGACGGAGTTTGCACAATACAA....................................................................................................................2322.5050300000020
....................................................................................................................ATATTGGCAGTCTTCGGCCTGAG..................................................2312.0020200000000
.....................................................ACGGAGTTTGCACAATACG.....................................................................................................................1912.0020200000000
....................................................................................................................ATATTGGCAGTCTTCGGCCTGAC..................................................2312.0020110000000
.......................................................................................................................TTGGCAGTCTTCGGCCTGAAA.................................................2112.0020200000000
....................................................................................................................ATATTGGCAGTCTTCGGCCCC....................................................2112.0020100100000
.....................................................................................................................TATTGGCAGTCTTCGGCCTGAT..................................................2212.0020200000000
....................................................................................................................ATATTGGCAGTCTTCGGCCTCT...................................................2212.0020100000010
..................................................TGGACGGAGTTTGCACAATACGTATTTA...............................................................................................................2812.0020000001010
..................................................TGGACGGAGTTTGCACAATACGTGAG.................................................................................................................2612.0020000000200
..................................................TGGACGGAGTTTGCACAATCG......................................................................................................................2112.0020000000020
.....................................................................................................................TATTGGCAGTCTTCGGCCA.....................................................1912.0020200000000
....................................................................................................................ATATTGGCAGTCTTCGGCCTGG...................................................2212.0021000100000
................................................................................................................TAACATATTGGCAGTCTTCGGC.......................................................2212.0020100000010
................................................TCTGGACGGAGTTTGCACAATACGT....................................................................................................................2512.0020100000010
.....................................................................................................................TATTGGCAGTCTTCGGCCTGAAAAA...............................................2512.0020200000000
..................................................TGGACGGAGTTTGCACAATCT......................................................................................................................2112.0020000001010
....................................................................................................................ATATTGGCAGTCTTCGGCTC.....................................................2012.0020000002000
...................................................GGACGGAGTTTGCACAATACGC....................................................................................................................2212.0020200000000
..................................................TGGACGGAGTTTGCACAATACGTCA..................................................................................................................2512.0020000000200
....................................................................................................................ATATTGGCAGTCTTCGGCCTGTC..................................................2312.0021000100000
......................................................................................................................ATTGGCAGTCTTCGGCCTGAA..................................................2111.0010100000000
..................................................TGGACGGAGTTTGCACAATACGTGA..................................................................................................................2511.0010000001000
..................................................TGGACGGAGTTTGCACA..........................................................................................................................1711.0010000000010
..................................................TGGACGGAGTTTGCACAATACGGC...................................................................................................................2411.0010000000010
....................................................................................................................ATATTGGCAGTCTTCGGCCTGAAGT................................................2511.0010000000100
...........................................................................................................TTTGTTAACATATTGGCAGTCTTCGGC.......................................................2711.0010000001000
....................................................GACGGAGTTTGCACAATACGTC...................................................................................................................2211.0010100000000
.................................................CTGGACGGAGTTTGCACAATACGTC...................................................................................................................2511.0010000001000
....................................................................................................................ATATTGGCAGTCTTCGGCT......................................................1911.0010000010000
...................................................GGACGGAGTTTGCACAATACGTAAAA................................................................................................................2611.0010100000000
....................................................................................................................ATATTGGCAGTCTTCGGCCTGAAAC................................................2511.0010100000000
.....................................................................................................................TATTGGCAGTCTTCGGCCTA....................................................2011.0010100000000
..................................................TGGACGGAGTTTGCACAATACTA....................................................................................................................2311.0010000000010
....................................................................................................................ATATTGGCAGTCTTCGGCCAC....................................................2111.0010100000000
droEle1
TACA--------------------------------------------------------------------TATGTA----CATACATACATACATACATATGTA-----------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads

Generated: 10/20/2015 at 07:45 PM