ID:

dpe_586

 Coordinate:

scaffold_1:7493536-7493686 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dper\GL19510-cds]; exon [dper_GLEANR_21647:2]; intron [Dper\GL19510-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GGGTAGCATAGCCATGGAAAATTGAATTGTTCATTCTGGTTATAATATTGATCCGATCTGATCCAGACGCGATATGTATTTGTGCAACCTTTCTTGAGGTCTGCCTAAAATTTGTGTAGGAAACAGGTGCGATTAAAATGATTACATTCTTTGTATTCATACATAATTTTTTAGTAATATGAACTTATTTATGTCTTTTAGATCTGTCCGAATTTGTTCGCCCCAATTATCTCTTTAAGCGCGTCCATGAG
**************************************************(((..(((((.(((..((((((......((((.((((((((....))))).))).))))..)))))).)))..)))))..)))....((((.((((.....)))).))))((((((...((((......)))).....)))))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total V057
head
 M042
female body
 V111
male body
...................................................................................................................CTAGGGAACAGGTGCGAT...................................................................................................................... 18 2 1 1.00 1 1 0 0
....................................................................................................................................................................AATTTGTTAGTGATATGAA.................................................................... 19 2 12 0.08 1 0 1 0
....................................................................................................................................................................AATTTGTTAGTGATATGA..................................................................... 18 2 20 0.05 1 0 0 1

Anti-sense strand reads

CCCATCGTATCGGTACCTTTTAACTTAACAAGTAAGACCAATATTATAACTAGGCTAGACTAGGTCTGCGCTATACATAAACACGTTGGAAAGAACTCCAGACGGATTTTAAACACATCCTTTGTCCACGCTAATTTTACTAATGTAAGAAACATAAGTATGTATTAAAAAATCATTATACTTGAATAAATACAGAAAATCTAGACAGGCTTAAACAAGCGGGGTTAATAGAGAAATTCGCGCAGGTACTC
**************************************************(((..(((((.(((..((((((......((((.((((((((....))))).))).))))..)))))).)))..)))))..)))....((((.((((.....)))).))))((((((...((((......)))).....)))))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total V042
embryo
.........................................................................................................................................................................................................................AGCGGGGTTAATTGATACA............... 19 3 20 0.05 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_1:7493486-7493736 + dpe_586 GGGTAGCATAGCCATGGAAAATTGAATTGTTCATTCTGGTTATAATATTGATCCGATCTGATCCAGACGCGATATGTATTTGTGCAACCTTTCTTGAGGTCTGCCTAAAATTTGTGTAGGAAACAGGTGCGATTAAAATGATTACATTCTTTGTATTCATACATAATTTTTTAGTAATATGAACTTATTTATGTCTTTTAGATCTGTCCGAATTTGTTCGCCCCAATTATCTCTTTAAGCGCGTCCATGAG
dp5 4_group3:5999531-5999724 + --------------------------------------------------ATCCGATCCGATCT------GATATGTATTTG-GCTACCTTTCTTGAGGTCTGCCTAAAATTTGTGTAGGAAACAGGTGCGATTAAAATGATTATATTCTTTGTATTCATACATAATTTTTTAGTAATATGAATTTATTTATGTCTATTCGATATGTCCAAATTGGTTCGGTCCAATTATATCCTTAAGCGCGTCCTTGAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
GGGTAGCATAGCCATGGAAAATTGAATTGTTCATTCTGGTTATAATATTGATCCGATCTGATCCAGACGCGATATGTATTTGTGCAACCTTTCTTGAGGTCTGCCTAAAATTTGTGTAGGAAACAGGTGCGATTAAAATGATTACATTCTTTGTATTCATACATAATTTTTTAGTAATATGAACTTATTTATGTCTTTTAGATCTGTCCGAATTTGTTCGCCCCAATTATCTCTTTAAGCGCGTCCATGAGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
dp5
--------------------------------------------------ATCCGATCCGATCT------GATATGTATTTG-GCTACCTTTCTTGAGGTCTGCCTAAAATTTGTGTAGGAAACAGGTGCGATTAAAATGATTATATTCTTTGTATTCATACATAATTTTTTAGTAATATGAATTTATTTATGTCTATTCGATATGTCCAAATTGGTTCGGTCCAATTATATCCTTAAGCGCGTCCTTGAGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads

Generated: 06/08/2015 at 02:54 PM