dpe_579

CDS [Dper\GL19489-cds]; exon [dper_GLEANR_21624:2]; exon [dper_GLEANR_21624:3]; CDS [Dper\GL19489-cds]; intron [Dper\GL19489-in]

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## AAGGCCAAGAATGAGAACTCAAACTTTAACGACCTATCCTACTTGAATATGTGGGAGTATTGGAAGCAGCAGTTGCACGCTTCCGTTCGATCAGTCGAACACATCACAAAAACAAAAGGAAAAAAATCAGAAAAATTCAGAAATAAAAAAAAACCAAACCAAATTTCAATTTGGATTTTTGTTATCTACTGCGTTGTTAACCAAGTGTGAAAGAATTGAATTCCTGTTAGTATGGCAGAACTAATGAACCGAAGGAGTAAGGCTCGCAAAATCAGGGATCTCCACCATACCACGGATAAAGATA *******************************************************************************************************************************************************************************************..(((((((..(((.........((((...)))).........)))...))).))))....****************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M042 female body	V111 male body
.............................................................................................................................................................................................TGCGTTGTTAACCAAGTGTGAAAG...........................................................................................	24	0	1	1.00	1	0	1
.............................................................................................................................................................................................................................................GAACTAATGAACCGAAGGAGT..............................................	21	0	1	1.00	1	0	1
.................................................................................................................................................................................................................................................................TAAGGCTCGCAAAATCAGGGATCTCCAC...................	28	0	1	1.00	1	1	0
...............................................................................................................................................................................................................................CTGTTAGTATGGCAGAACTAATGAACC......................................................	27	0	1	1.00	1	1	0
..................TCAAACTTTAACGACCTATCCTACT.....................................................................................................................................................................................................................................................................	25	0	1	1.00	1	1	0
........................................................................................................................................................................................................................TGAATTCCTGTTAGTATGGCAGAACTAA............................................................	28	0	1	1.00	1	0	1
........................................................................................................................................................................................................CCAAGTGTGAAAGAATTGAATTCCT...............................................................................	25	0	1	1.00	1	1	0
.............................................................................................................................................................................................TGCGTTGTGAACCAAGTGTGAAAGAAT........................................................................................	27	1	1	1.00	1	1	0
....................................................................................................................................................................................................................................................TGAACCGAAGGAGTAAGGT.........................................	19	1	1	1.00	1	0	1
..............................................ATATGTGGGAGGCTTTGAAGCA............................................................................................................................................................................................................................................	22	3	3	0.67	2	1	1
..............................................ATAGGTGGGAGGATTTGAAGCA............................................................................................................................................................................................................................................	22	3	3	0.33	1	0	1
................................................ATGTGGGAGGCTTTGAAGCA............................................................................................................................................................................................................................................	20	3	15	0.07	1	1	0
..................................................GTGGGAGGCTTTGAAGCAGC..........................................................................................................................................................................................................................................	20	3	16	0.06	1	0	1

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AAGGCCAAGAATGAGAACTCAAACTTTAACGACCTATCCTACTTGAATATGTGGGAGTATTGGAAGCAGCAGTTGCACGCTTCCGTTCGATCAGTCGAACACATCACAAAAACAAAAGGAAAAAAATCAGAAAAATTCAGAAATAAAAAAAAACCAAACCAAATTTCAATTTGGATTTTTGTTATCTACTGCGTTGTTAACCAAGTGTGAAAGAATTGAATTCCTGTTAGTATGGCAGAACTAATGAACCGAAGGAGTAAGGCTCGCAAAATCAGGGATCTCCACCATACCACGGATAAAGATA
*********************************************************************************************************************************************************************************************..(((((((..(((.........((((...)))).........)))...))).))))....******************************************************

Read size

# Mismatch

Hit Count

Total Norm

Total

M042
female body

V111
male body

.............................................................................................................................................................................................TGCGTTGTTAACCAAGTGTGAAAG...........................................................................................

1.00

.............................................................................................................................................................................................................................................GAACTAATGAACCGAAGGAGT..............................................

1.00

.................................................................................................................................................................................................................................................................TAAGGCTCGCAAAATCAGGGATCTCCAC...................

1.00

...............................................................................................................................................................................................................................CTGTTAGTATGGCAGAACTAATGAACC......................................................

1.00

..................TCAAACTTTAACGACCTATCCTACT.....................................................................................................................................................................................................................................................................

1.00

........................................................................................................................................................................................................................TGAATTCCTGTTAGTATGGCAGAACTAA............................................................

1.00

........................................................................................................................................................................................................CCAAGTGTGAAAGAATTGAATTCCT...............................................................................

1.00

.............................................................................................................................................................................................TGCGTTGTGAACCAAGTGTGAAAGAAT........................................................................................

1.00

....................................................................................................................................................................................................................................................TGAACCGAAGGAGTAAGGT.........................................

1.00

..............................................ATATGTGGGAGGCTTTGAAGCA............................................................................................................................................................................................................................................

0.67

..............................................ATAGGTGGGAGGATTTGAAGCA............................................................................................................................................................................................................................................

0.33

................................................ATGTGGGAGGCTTTGAAGCA............................................................................................................................................................................................................................................

0.07

..................................................GTGGGAGGCTTTGAAGCAGC..........................................................................................................................................................................................................................................

0.06

Anti-sense strand reads

TTCCGGTTCTTACTCTTGAGTTTGAAATTGCTGGATAGGATGAACTTATACACCCTCATAACCTTCGTCGTCAACGTGCGAAGGCAAGCTAGTCAGCTTGTGTAGTGTTTTTGTTTTCCTTTTTTTAGTCTTTTTAAGTCTTTATTTTTTTTTGGTTTGGTTTAAAGTTAAACCTAAAAACAATAGATGACGCAACAATTGGTTCACACTTTCTTAACTTAAGGACAATCATACCGTCTTGATTACTTGGCTTCCTCATTCCGAGCGTTTTAGTCCCTAGAGGTGGTATGGTGCCTATTTCTAT ****************************************************..(((((((..(((.........((((...)))).........)))...))).))))....*******************************************************************************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V111 male body	M042 female body	V050 head	V042 embryo	V057 head
..............................................................................................................................................................................................................................................................................TAGTCTCTAGAGGTGGTATGGTGCCTAT......	28	1	4	5.00	20	15	5	0	0	0
................................................................................................................................................................................................................................................................................GTCTCTAGAGGTGGTATGGTGCCTAT......	26	1	4	4.25	17	1	15	0	1	0
..................................................................................................................................................................................................................................................................................CTCTAGAGGTGGTATGGTGCCTAT......	24	1	4	4.00	16	3	13	0	0	0
...................................................................TCGTCAACGTGCGAAGGCAAGCTAG....................................................................................................................................................................................................................	25	0	1	3.00	3	3	0	0	0	0
.........CTACTCTTGAGTTTGAAATTGCTGGATAG..........................................................................................................................................................................................................................................................................	29	1	1	3.00	3	3	0	0	0	0
....................................................................................CAAGCTAGTCAGCTTGTGTAGTGT....................................................................................................................................................................................................	24	0	1	3.00	3	0	3	0	0	0
.................................................................................................................................................................................................................................................................................TCTCTAGAGGTGGTATGGTGCCTAT......	25	1	4	2.75	11	3	7	0	1	0
...............................................................................................................................................................................................................................................................................AGTCTCTAGAGGTGGTATGGTGCCTAT......	27	1	4	2.00	8	1	7	0	0	0
.....................TTGAAATTGCTGGATAGGATGAACT..................................................................................................................................................................................................................................................................	25	0	1	2.00	2	2	0	0	0	0
.................GAGTTTGAAATTGCTGGATAG..........................................................................................................................................................................................................................................................................	21	0	1	2.00	2	2	0	0	0	0
........................................................................................CTAGTCAGCTTGTGTAGTGTTTTTGTT.............................................................................................................................................................................................	27	0	1	2.00	2	2	0	0	0	0
......................TGAAATTGCTGGATAGGATGAACT..................................................................................................................................................................................................................................................................	24	0	1	2.00	2	2	0	0	0	0
........................................................................................CTAGTCAGCTTGTGTAGTGTTTTTGT..............................................................................................................................................................................................	26	0	1	2.00	2	2	0	0	0	0
........................................................................................CTAGTCAGCTTGTGTAGTGTTTTT................................................................................................................................................................................................	24	0	1	2.00	2	1	0	1	0	0
.................................................................................................................................................................................................................................................................................TCCCTAGAGGTGGTATGGTGCCTAT......	25	0	4	1.25	5	2	3	0	0	0
.......................................................................................................................................................................................................................................................................................GAGGTGGTATGGTGCCTAT......	19	0	4	1.25	5	5	0	0	0	0
.................................................................................................TTGTGTAGTGTTTTTGTTTTC..........................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0
..........................................................................................AGTCAGCTTGTGTAGTATTTTTGTT.............................................................................................................................................................................................	25	1	1	1.00	1	0	1	0	0	0
.................GAGTTTGAAATTGCTGGATAGGATGAAC...................................................................................................................................................................................................................................................................	28	0	1	1.00	1	1	0	0	0	0
........................................................................................ATAGTCAGCTTGTGTAGTGTTTT.................................................................................................................................................................................................	23	1	1	1.00	1	1	0	0	0	0
..................................................................................GGCAAGCTAGTCAGCTTGTGTAGTGT....................................................................................................................................................................................................	26	0	1	1.00	1	0	1	0	0	0
......................................................................................CCCTAGTCAGCTTGTGTAGTGTTTT.................................................................................................................................................................................................	25	2	1	1.00	1	1	0	0	0	0
.TCCGGTTCTTACTCTTGAGTTTGAAAT....................................................................................................................................................................................................................................................................................	27	0	1	1.00	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................TGGCTTCCTCATTCCGAGCGTTTT.................................	24	0	1	1.00	1	0	1	0	0	0
..........................................................................CGTGCGAAGGCAAGCTAGTCAGCTTGTGT.........................................................................................................................................................................................................	29	0	1	1.00	1	1	0	0	0	0
......................................................................................................................................................................................................................................................TTGTCTTCCTCATTCCGAGCGTTTT.................................	25	1	1	1.00	1	0	1	0	0	0
............................................................................................................................................................................................................CACACTTTCTTAACTTAAGGACAATCAT........................................................................	28	0	1	1.00	1	0	1	0	0	0
................TGAGTTTGAAATTGCTGGATAGGAT.......................................................................................................................................................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0
........................................................................................CTAGTCAGCTTGTGTAGTGTTTTTGTTT............................................................................................................................................................................................	28	0	1	1.00	1	1	0	0	0	0
.....................................................................................................................................................TTTTGGTTTGGTTTAAAGTT.......................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0
................TGAGTTTGAAATTGCTGGATAGGATG......................................................................................................................................................................................................................................................................	26	0	1	1.00	1	1	0	0	0	0
...................................................................................................................................................................................................................................................TACTTGGCTTCCTCATTCCGAGCGT....................................	25	0	1	1.00	1	0	1	0	0	0
..................................................................GTCGTCAACGTGCGAAGGCAAGCTAGT...................................................................................................................................................................................................................	27	0	1	1.00	1	1	0	0	0	0
.......................................................................................................................................................................................................................................................................AGCGTTTTAGTCCCTAGAGGTGGT.................	24	0	1	1.00	1	1	0	0	0	0
..................................................................GTCGTCAACGTGCGAAGACAAGCTAGT...................................................................................................................................................................................................................	27	1	1	1.00	1	1	0	0	0	0
.........................................................................................TAGTCAGCTTGTGTAGTGTTT..................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0
......................................................................................AGCTAGTCAGCTTGTGTAGTGTTT..................................................................................................................................................................................................	24	0	1	1.00	1	1	0	0	0	0
........................................................................................................................................................................TAAACCTAAAAACAATAGATGACGCA..............................................................................................................	26	0	1	1.00	1	0	1	0	0	0
...................................................................................GCAAGCTAGTCAGCTTGTGTAGTGT....................................................................................................................................................................................................	25	0	1	1.00	1	0	1	0	0	0
.........................................................................................TAGTCAGCTTGTGTAGTGTTTTTGTT.............................................................................................................................................................................................	26	0	1	1.00	1	1	0	0	0	0
......................................................................................................................................................................................................................................................................................AGAGGTGGTATGGTGCCTAT......	20	0	4	0.75	3	3	0	0	0	0
................................................................................................................................................................................................................................................................................TTCTCTAGAGGTGGTATGGTGCCTAT......	26	2	4	0.75	3	1	2	0	0	0
..............................................................................................................................................................................................................................................................................TAGTCTCTAGAGGTGGTATGGTGCCT........	26	1	4	0.75	3	0	3	0	0	0
.................................................................................................................................................................................................................................................................................TCTCTAGAGGTGGTATGGTGCCTA.......	24	1	4	0.50	2	0	2	0	0	0
................................................................................................................................................................................................................................................................................CTCCCTAGAGGTGGTATGGTGCCTAT......	26	1	4	0.50	2	2	0	0	0	0
...................................................................................................................................................................................................................................................................................TCTAGAGGTGGTATGGTGCCTAT......	23	1	4	0.50	2	0	2	0	0	0
................................................................................................................................................................................................................................................................................GTCCCTAGAGGTGGTATGGTGCCTAT......	26	0	4	0.50	2	1	1	0	0	0
.................................................................................................................................................................................................................................................................................TCTCCAGAGGTGGTATGGTGCCTA.......	24	2	4	0.25	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................TAGAGGTGGTATGGTGCCTAT......	21	0	4	0.25	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................GTCTCTAGAGGTGGTATGGTGCCTA.......	25	1	4	0.25	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................GAGGTGGTATGGTGCCTATT.....	20	0	4	0.25	1	1	0	0	0	0
......................................................................................................................................................................................................................................................................................AGAGGTGGTATGGTGCCTATT.....	21	0	4	0.25	1	1	0	0	0	0
..................................................................................................................................................................................................................................................................................CCCTAGAGGTGGTATGTTGCCTAT......	24	1	4	0.25	1	1	0	0	0	0
...................................................................................................................................................................................................................................................................................TCTAGAGGTGGTATGGTGCCTA.......	22	1	4	0.25	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................ATCTAGAGGTGGTATGGTGCCTAT......	24	2	4	0.25	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................AGTCCCTAGAGGTGGTATGGTGCCTAT......	27	0	4	0.25	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................GTCTCTAGAGGTGGTATGGTGCCTTT......	26	2	4	0.25	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................AGTCTCTAGAGGTGGTATGGTGCCTA.......	26	1	4	0.25	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................AGGTGGTATGGTGCCTATTT....	20	0	4	0.25	1	1	0	0	0	0
.................................................................................................................................................................................................................................................................................TCTCTAGAGGTGGTATGGTGCCTATGTG...	28	3	4	0.25	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................TTGTCTCTAGAGGTGGTATGGTGCCTAT......	28	2	4	0.25	1	1	0	0	0	0
................................................................................................................................................................................................................................................................................GTCCCTAGAGGTGGTATGGT............	20	0	5	0.20	1	1	0	0	0	0
.........................................................................................................................TCTGTAGTCTTTTTAAGTC....................................................................................................................................................................	19	2	7	0.14	1	0	1	0	0	0
................TGAGTTTGAAGGTGCTGG..............................................................................................................................................................................................................................................................................	18	2	7	0.14	1	0	0	0	0	1
.........................................................................................................................TCTGTAGTCTTTTTAAGTCC...................................................................................................................................................................	20	3	16	0.13	2	0	2	0	0	0
................................................................TCGTCGTCAGCGTGCGAGGTC...........................................................................................................................................................................................................................	21	3	10	0.10	1	0	0	0	0	1
..........................................................................................................................................................................................................................................................................GTTTTGGTCACGAGAGGTGG..................	20	3	10	0.10	1	0	1	0	0	0
.......................................................................................AAAAGTCAGCTTGTGTAGTGT....................................................................................................................................................................................................	21	3	11	0.09	1	1	0	0	0	0

TTCCGGTTCTTACTCTTGAGTTTGAAATTGCTGGATAGGATGAACTTATACACCCTCATAACCTTCGTCGTCAACGTGCGAAGGCAAGCTAGTCAGCTTGTGTAGTGTTTTTGTTTTCCTTTTTTTAGTCTTTTTAAGTCTTTATTTTTTTTTGGTTTGGTTTAAAGTTAAACCTAAAAACAATAGATGACGCAACAATTGGTTCACACTTTCTTAACTTAAGGACAATCATACCGTCTTGATTACTTGGCTTCCTCATTCCGAGCGTTTTAGTCCCTAGAGGTGGTATGGTGCCTATTTCTAT
******************************************************..(((((((..(((.........((((...)))).........)))...))).))))....*********************************************************************************************************************************************************************************************

Read size

# Mismatch

Hit Count

Total Norm

Total

V111
male body

M042
female body

V050
head

V042
embryo

V057
head

..............................................................................................................................................................................................................................................................................TAGTCTCTAGAGGTGGTATGGTGCCTAT......

5.00

................................................................................................................................................................................................................................................................................GTCTCTAGAGGTGGTATGGTGCCTAT......

4.25

..................................................................................................................................................................................................................................................................................CTCTAGAGGTGGTATGGTGCCTAT......

4.00

...................................................................TCGTCAACGTGCGAAGGCAAGCTAG....................................................................................................................................................................................................................

3.00

.........CTACTCTTGAGTTTGAAATTGCTGGATAG..........................................................................................................................................................................................................................................................................

3.00

....................................................................................CAAGCTAGTCAGCTTGTGTAGTGT....................................................................................................................................................................................................

3.00

.................................................................................................................................................................................................................................................................................TCTCTAGAGGTGGTATGGTGCCTAT......

2.75

...............................................................................................................................................................................................................................................................................AGTCTCTAGAGGTGGTATGGTGCCTAT......

2.00

.....................TTGAAATTGCTGGATAGGATGAACT..................................................................................................................................................................................................................................................................

2.00

.................GAGTTTGAAATTGCTGGATAG..........................................................................................................................................................................................................................................................................

2.00

........................................................................................CTAGTCAGCTTGTGTAGTGTTTTTGTT.............................................................................................................................................................................................

2.00

......................TGAAATTGCTGGATAGGATGAACT..................................................................................................................................................................................................................................................................

2.00

........................................................................................CTAGTCAGCTTGTGTAGTGTTTTTGT..............................................................................................................................................................................................

2.00

........................................................................................CTAGTCAGCTTGTGTAGTGTTTTT................................................................................................................................................................................................

2.00

.................................................................................................................................................................................................................................................................................TCCCTAGAGGTGGTATGGTGCCTAT......

1.25

.......................................................................................................................................................................................................................................................................................GAGGTGGTATGGTGCCTAT......

1.25

.................................................................................................TTGTGTAGTGTTTTTGTTTTC..........................................................................................................................................................................................

1.00

..........................................................................................AGTCAGCTTGTGTAGTATTTTTGTT.............................................................................................................................................................................................

1.00

.................GAGTTTGAAATTGCTGGATAGGATGAAC...................................................................................................................................................................................................................................................................

1.00

........................................................................................ATAGTCAGCTTGTGTAGTGTTTT.................................................................................................................................................................................................

1.00

..................................................................................GGCAAGCTAGTCAGCTTGTGTAGTGT....................................................................................................................................................................................................

1.00

......................................................................................CCCTAGTCAGCTTGTGTAGTGTTTT.................................................................................................................................................................................................

1.00

.TCCGGTTCTTACTCTTGAGTTTGAAAT....................................................................................................................................................................................................................................................................................

1.00

.......................................................................................................................................................................................................................................................TGGCTTCCTCATTCCGAGCGTTTT.................................

1.00

..........................................................................CGTGCGAAGGCAAGCTAGTCAGCTTGTGT.........................................................................................................................................................................................................

1.00

......................................................................................................................................................................................................................................................TTGTCTTCCTCATTCCGAGCGTTTT.................................

1.00

............................................................................................................................................................................................................CACACTTTCTTAACTTAAGGACAATCAT........................................................................

1.00

................TGAGTTTGAAATTGCTGGATAGGAT.......................................................................................................................................................................................................................................................................

1.00

........................................................................................CTAGTCAGCTTGTGTAGTGTTTTTGTTT............................................................................................................................................................................................

1.00

.....................................................................................................................................................TTTTGGTTTGGTTTAAAGTT.......................................................................................................................................

1.00

................TGAGTTTGAAATTGCTGGATAGGATG......................................................................................................................................................................................................................................................................

1.00

...................................................................................................................................................................................................................................................TACTTGGCTTCCTCATTCCGAGCGT....................................

1.00

..................................................................GTCGTCAACGTGCGAAGGCAAGCTAGT...................................................................................................................................................................................................................

1.00

.......................................................................................................................................................................................................................................................................AGCGTTTTAGTCCCTAGAGGTGGT.................

1.00

..................................................................GTCGTCAACGTGCGAAGACAAGCTAGT...................................................................................................................................................................................................................

1.00

.........................................................................................TAGTCAGCTTGTGTAGTGTTT..................................................................................................................................................................................................

1.00

......................................................................................AGCTAGTCAGCTTGTGTAGTGTTT..................................................................................................................................................................................................

1.00

........................................................................................................................................................................TAAACCTAAAAACAATAGATGACGCA..............................................................................................................

1.00

...................................................................................GCAAGCTAGTCAGCTTGTGTAGTGT....................................................................................................................................................................................................

1.00

.........................................................................................TAGTCAGCTTGTGTAGTGTTTTTGTT.............................................................................................................................................................................................

1.00

......................................................................................................................................................................................................................................................................................AGAGGTGGTATGGTGCCTAT......

0.75

................................................................................................................................................................................................................................................................................TTCTCTAGAGGTGGTATGGTGCCTAT......

0.75

..............................................................................................................................................................................................................................................................................TAGTCTCTAGAGGTGGTATGGTGCCT........

0.75

.................................................................................................................................................................................................................................................................................TCTCTAGAGGTGGTATGGTGCCTA.......

0.50

................................................................................................................................................................................................................................................................................CTCCCTAGAGGTGGTATGGTGCCTAT......

0.50

...................................................................................................................................................................................................................................................................................TCTAGAGGTGGTATGGTGCCTAT......

0.50

................................................................................................................................................................................................................................................................................GTCCCTAGAGGTGGTATGGTGCCTAT......

0.50

.................................................................................................................................................................................................................................................................................TCTCCAGAGGTGGTATGGTGCCTA.......

0.25

.....................................................................................................................................................................................................................................................................................TAGAGGTGGTATGGTGCCTAT......

0.25

................................................................................................................................................................................................................................................................................GTCTCTAGAGGTGGTATGGTGCCTA.......

0.25

.......................................................................................................................................................................................................................................................................................GAGGTGGTATGGTGCCTATT.....

0.25

......................................................................................................................................................................................................................................................................................AGAGGTGGTATGGTGCCTATT.....

0.25

..................................................................................................................................................................................................................................................................................CCCTAGAGGTGGTATGTTGCCTAT......

0.25

...................................................................................................................................................................................................................................................................................TCTAGAGGTGGTATGGTGCCTA.......

0.25

..................................................................................................................................................................................................................................................................................ATCTAGAGGTGGTATGGTGCCTAT......

0.25

...............................................................................................................................................................................................................................................................................AGTCCCTAGAGGTGGTATGGTGCCTAT......

0.25

................................................................................................................................................................................................................................................................................GTCTCTAGAGGTGGTATGGTGCCTTT......

0.25

...............................................................................................................................................................................................................................................................................AGTCTCTAGAGGTGGTATGGTGCCTA.......

0.25

........................................................................................................................................................................................................................................................................................AGGTGGTATGGTGCCTATTT....

0.25

.................................................................................................................................................................................................................................................................................TCTCTAGAGGTGGTATGGTGCCTATGTG...

0.25

..............................................................................................................................................................................................................................................................................TTGTCTCTAGAGGTGGTATGGTGCCTAT......

0.25

................................................................................................................................................................................................................................................................................GTCCCTAGAGGTGGTATGGT............

0.20

.........................................................................................................................TCTGTAGTCTTTTTAAGTC....................................................................................................................................................................

0.14

................TGAGTTTGAAGGTGCTGG..............................................................................................................................................................................................................................................................................

0.14

.........................................................................................................................TCTGTAGTCTTTTTAAGTCC...................................................................................................................................................................

0.13

................................................................TCGTCGTCAGCGTGCGAGGTC...........................................................................................................................................................................................................................

0.10

..........................................................................................................................................................................................................................................................................GTTTTGGTCACGAGAGGTGG..................

0.10

.......................................................................................AAAAGTCAGCTTGTGTAGTGT....................................................................................................................................................................................................

0.09

Re-alignment of all predicted orthologs

Species	Coordinate	ID	Alignment
droPer2	scaffold_1:6974253-6974556 +	dpe_579	AAGGCCAAGAATGAGAACTCAAACTTTAACGACCTATCCTACTTGAATATGTGGGAGTATTGGAAGCAGCAGTTGCACGCTTCCGTTCGATCAGTCGAACACATCACAAAAACAAAAGGAAAAAAATCAGAAAAATTCAGAAATAAAAAAAAACCAAACCAAATTTCAATTTGGATTTTTGTTATCTACTGCGTTGTTAACCAAGTGTGAAAGAATTGAATTCCTGTTAGTATGGCAGAACTAATGAACCGAAGGAGTAAGGCTCGCAAAATCAGGGATCTCCACCATACCACGGATAAAGATA
dp5	XL_group1e:5813353-5813442 -		-----------CGACAACTCCAACTTTAATGACCTGTCTTACCTAAATATGTGGGAGTACTGGAAGCAGCAATTACACGCTTCCGTTCAAAAAACCAAATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droPer2

AAGGCCAAGAATGAGAACTCAAACTTTAACGACCTATCCTACTTGAATATGTGGGAGTATTGGAAGCAGCAGTTGCACGCTTCCGTTCGATCAGTCGAACACATCACAAAAACAAAAGGAAAAAAATCAGAAAAATTCAGAAATAAAAAAAAACCAAACCAAATTTCAATTTGGATTTTTGTTATCTACTGCGTTGTTAACCAAGTGTGAAAGAATTGAATTCCTGTTAGTATGGCAGAACTAATGAACCGAAGGAGTAAGGCTCGCAAAATCAGGGATCTCCACCATACCACGGATAAAGATA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.............................................................................................................................................................................................TGCGTTGTTAACCAAGTGTGAAAG...........................................................................................	24	1	1.00	1	0	0	0	0	0	1
.............................................................................................................................................................................................................................................GAACTAATGAACCGAAGGAGT..............................................	21	1	1.00	1	0	0	0	0	0	1
.................................................................................................................................................................................................................................................................TAAGGCTCGCAAAATCAGGGATCTCCAC...................	28	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................CTGTTAGTATGGCAGAACTAATGAACC......................................................	27	1	1.00	1	0	1	0	0	0	0
..................TCAAACTTTAACGACCTATCCTACT.....................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................................TGAATTCCTGTTAGTATGGCAGAACTAA............................................................	28	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................................................................................CCAAGTGTGAAAGAATTGAATTCCT...............................................................................	25	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................TGAACCGAAGGAGTAAGGT.........................................	19	1	1.00	1	0	0	0	0	0	1

dp5

-----------CGACAACTCCAACTTTAATGACCTGTCTTACCTAAATATGTGGGAGTACTGGAAGCAGCAATTACACGCTTCCGTTCAAAAAACCAAATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

Total

M022
Male-body

M040
Female-body

M059
Embryo

M062
Head

V043
Embryo

V051
Head

V112
Male-body

SRR902010
Ovary

SRR902011
Testis

SRR902012
CNS imaginal disc

No Reads

dpe_579

scaffold_1:6974303-6974506 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-3.5	-3.5	-3.5