ID:

dpe_575

 Coordinate:

scaffold_1:6744172-6744322 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-7.1 -7.0 -7.0 -6.5

Flybase annnotation

CDS [Dper\GL19475-cds]; exon [dper_GLEANR_21610:14]; intron [Dper\GL19475-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AACCGAAAATGGGAGGCAACTCCAAAAAGATTTATCTAAGCACTTTTATTTCTTGGTTTCTTAAGATTTCTTTTTCAAGATATCGTTGGAACTTTTTTTGGATGCAAATTATGCTTAGATTTTGGGCTGGGTTTTATTTTTTTTTGTTCGTTTGGGGTCTTGTGAAGATTGTTTCTCATGATGTTCTCATGATTATTGCAGCGACAATGGTTCGGTGGCTTCCGATCTGACGCGAATGTATGTGAGCGATG
************************************************************************.......(((.......................(((((..(((((.....)))))..))))))))****************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 V111
male body		 V057
head
 V050
head
 V042
embryo
.....AAAATGGGAGGCAACTCCAAAAAG.............................................................................................................................................................................................................................. 24 0 1 1.00 1 0 0 1 0 0
........................................................................TTTCAAGATATCGTTGGAA................................................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0
...................................................................................CGTTGGAACTCTTTTTGGATGCA................................................................................................................................................. 23 1 1 1.00 1 0 1 0 0 0
.................................................................................................................CTTAGATTTTGGGCTGGGTTTTAT.................................................................................................................. 24 0 1 1.00 1 0 1 0 0 0
...................................................................................................................................................................................GATGTTCTCATGATTATTGC.................................................... 20 0 1 1.00 1 1 0 0 0 0
.................................ATCTAAGCACTTTTATTTCTTGGTTTCTT............................................................................................................................................................................................. 29 0 1 1.00 1 1 0 0 0 0
...............................................................................................................................................................................................................................GATCTGACGCGAATGTATGTGAGC.... 24 0 1 1.00 1 1 0 0 0 0
.................................................................................................................................................GTTCGTTTGGGGTCTTGTGAG..................................................................................... 21 1 1 1.00 1 0 1 0 0 0
..................................................................................................................................................TTCGTTTGGGGTCTTGTGAAGAT.................................................................................. 23 0 1 1.00 1 0 0 0 1 0
...............................................................................ATATCGTTGGAACTTTTTTTGG...................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0
..............................................................................................................................................TTTGTTCGTGTGGCGTCTGGT........................................................................................ 21 3 5 0.20 1 0 0 1 0 0
.......................................................................................................................................................................................................AAAGACAATGGTTCGGTTGC................................ 20 3 18 0.06 1 0 0 0 0 1
........................................................................................................................................................TGGGGTCTTGACAAGAATG................................................................................ 19 3 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

TTGGCTTTTACCCTCCGTTGAGGTTTTTCTAAATAGATTCGTGAAAATAAAGAACCAAAGAATTCTAAAGAAAAAGTTCTATAGCAACCTTGAAAAAAACCTACGTTTAATACGAATCTAAAACCCGACCCAAAATAAAAAAAAACAAGCAAACCCCAGAACACTTCTAACAAAGAGTACTACAAGAGTACTAATAACGTCGCTGTTACCAAGCCACCGAAGGCTAGACTGCGCTTACATACACTCGCTAC
******************************************************************************************************************.......(((.......................(((((..(((((.....)))))..))))))))************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M042
female body
..................................................................................................................................................................ACATCAAACAAAGAGCACTA..................................................................... 20 3 14 0.07 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_1:6744122-6744372 + dpe_575 AACCGA---AAATGGGAGGCAACTCCAAA-AA-----------------GA-TTTATC------T--------------------AAGCACTTTTATTTCTTGGTTTCTTAAGATTTCTTTTTCAAGATATCGTTGGAACTT--TTTTTGG-AT-GC-----------------------------------------------------------A-------------AA-------------T---TATGCTTAGATT----TTGGGCTG-------------------------------------------------------------GGTT--------T-TATTTTTTTTT----GTTCG--TT------------------------------------TGGGGT-CTTGTGAAGA---------------------------TTGTTTCTCATGA-------T---G---------TTCTCAT--G--------------------------------------ATT-ATT----GCAGCGACAATGGTTCGGTGGCTTCCGATCTGACGCGAATGTATGTGAGCGATG
dp5 4_group3:5253429-5253677 + AACCGA---AAATGGGAGGCAACTCCAAA-AA-----------------GA-TTTATC------T--------------------AAGCACTTTTATTTCTTGGTTTCTTAAGATTTCTTTTTCAAGATATCGTTGGAACTCTT-T-TTGG-AT-GC-----------------------------------------------------------A-------------AA-------------T---TATGCTTAGATT----TTGGGCTG-------------------------------------------------------------GGTT--------T-TATTTT--TTT----CTTCG--TT------------------------------------TGGGGT-CTTGTGAAGA---------------------------TTGTTTCTCATGA-------T---G---------TTCTCAT--G--------------------------------------ATT-ATT----GCAGCGACAATGTTTCGGTGGCTTCCGATCTGACGCGAATGTATGTGAGCGATG
droWil2 scf2_1100000004521:8966312-8966524 - AAACAA---AAATCCAAACAAAATAAAAA-ATTT-------------------------------------------------------------------------------------TT--TGGGGTTTGTT-------------TTGC-G-----------------------------------------------------------------------------TTTTACGATTGGAATT---TGTTGTTGTTTTGGTT-------------------------------------------------------------------------------TTTT-----T-----TATTTTT---------------------------------------------------------------------------C--ATATGTT-----TGCTA------------------------------TGGGGCTACATTCAACATTTAACGTAAATCCAAATCTTTGATTCTTAATCGCCAGCAACGACAATGTTTCGGTGGCTTCCGATTTGACGCGAATGTATGTCAGCGATG
droVir3 scaffold_12963:15288928-15289210 + dvi_12023 ATCCAACCAAAATTGGAGGCGGTTGCATG-T-----CCAACTCTAATATTA-TTTATT------TCCATTAGGCTACCTT--TAAAGGCGC----------------------------------------------GA--CT-ATTTGAA-AT-GCA----------------------------------------------------------A-------------AA-------------T---ACTTATCGG-----------GCGG-------------------------------------------------------------TATTTTGCTTGTTT-----T-----TCTTTTTCA--TTTTGAACA-----AATCGATTTTCATTCAATTTCGT-CGGGTT-TCTA-------------CCAAGTTAA---------------TGCTTATGTTTGCCGATGA------CTTTAACATC------------------------------------TTCAATTTTA-ATC-GCAGCAGCGACAATGTGTCAGTGGCCTCGGACTTGACCCGCATGTATGTCAGCGATG
droMoj3 scaffold_6500:18266823-18267137 + AGCCAA---AT-TTGGAGGCGGTTGCTTG-T-----CCAACTCTAATATTAATTTATTTATCTATCCATCGGGCGGTCTCAAAAAAGGCGC----------------------------------------------GT--CT-ATTTGGA-AT-GC-----------------------------------------------------------A-------------AA-------------T---CGG-----------------GTGCATTTGTATTTGGACACTGAAATTCTGTTAACTGATTTTATTTCAGATTATTTATTTATTTACATTTTGTTTGTTT-----T-----GCTTTTTTG--TT-----------------------------------------------------TGGGCTTGTTATTT--A--CCCAGTT-----TGCTAATGCTTGCCGATGT------CTTTTACATC------------------------------------TTCAATTCTC-ATC-GCAGCAGTGACAATGTCTCAGTGGCTTCCGACTTGACCCGCATGTATGTCAGCGATG
droGri2 scaffold_15126:4124489-4124753 - AATCCA---AAATTGGAGGCGGTTGCATG-T-----CGAACTCTAATATTA-TTTAAT------TGTGTGGTGCTGCCGT--TAAAGGCGC----------------------------------------------GG--CT-ATTTGGG-AT-GGAAATTACTAACAGGGTTCTTCATTTATGCTTAGTATAAATGTTGTTTTTTTTTGTTGTTACAAGTTAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAC--CGATGTT-----TGCTAATGTTTGCCGATGT------CTTTAACATC------------------------------------TTCAATTCTT-ATC-GCAGCAGCGACAATGTTTCAGTGGCTTCGGACTTGACCCGCATGTATGTCAGTGATG
droAna3 scaffold_12916:5541922-5542084 - GGCTTT---AAATGGAAGGCGGCTCCAAG-CATT----------------------------------------------------------TG-TTACCAA----------A-ATTTTTA--------------------------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------------------------------------TTTTCCTATTTTTGGCAAATGAATGCGATTTT-----------------------------------------------A--ATGCAAA-----TTTTCTTG---------------------------------------------------------------TT---TTATT-TTT-GCAGCAGCGATAATGTCTCAGTGGCCTCGGATCTGACCAGAATGTATGTAAGCGATG
droBip1 scf7180000396568:1296427-1296588 + GGCTTT---AAATGGAAGGCGGCTCCAAG-CATT----------------------------------------------------------TT-TCACCAA----------A-TTTTTT--------------T------------------------------------------------------------------------------------------------------------------------A----------------------------------------------------------------------------------------------------------TTTTCCTATTTTTGGCAAACGAATGCGATTTT-----------------------------------------------A--ATG-------------CAAATTTT-----GT------G---------------------------------------------TT---TTATT-TTT-GCAGCAGCGATAATGTCTCTGTGGCCTCGGATCTAACCAGAATGTATGTGAGCGATG
droKik1 scf7180000302270:1148743-1148911 + AACTGA---AAATGG-----------------TTAG-------------------------------------------------------------GACTTT-T------------TATA--TA-GATTTCTTTGT-------------------------------------------------------------------------------------------------------------------------TTTTTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGTGGGTAATTTAAT--GTGTGTGT----TGCTCATGTTTC-----CA------CTTTTGGCTCATTGG-------------------------------CT---CCATT-GCA-GCAGCAACGACAATGTCTCGGTGGCCTCCGACCTGACCCGCATGTATGTAAGCGATG
droFic1 scf7180000453924:1479916-1480108 - G------------------CGGCTCCGATTCAGT----------------------------------------------------------TT-TTGTTCA----------ATTTTTTTTTCGACGACTTCAGTGG--------------CCA----------------------------------------------------------------------GTGGA-AA-------------T---TGTTCTTGGCCTTTATT---------------------------------------------------------------------------------------------------------------------------------------------------------------TGGGCGGGTAATTTGAT--GTGTGTGT----TGCTCATGTTTC-----GA------CTTTTGGCTCGT--G--------------------------------------ATC-ATT-GCAGCAGCGACAATGTGTCCATAGCCTCCGACCTGACCAGAATGTATGTGAGCGATG
droEle1 scf7180000490728:166595-166762 - T-------------------------------------------------------------------------------------------------------T------------TTAA--CTCAATTTCATTGG--CTGTT-T-TTGGCCG-GG-----------------------------------------------------------A-------------AA---------------------CTTGGCCTTTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------TGGGCGGGTAATTTGAT--GTGTGTGT----TGCTCATGTTTC-----GA------CTTTTGGCTCATTGG--------------------------------------ATC-ATT-GCAGCAGCGACAATGTCTCATTGGCCTCGGATCTGACCAGAATGTATGTGAGTGATG
droRho1 scf7180000779523:173876-174082 - GGCTGGCAA--------------------ACATT----------------------------------------------------------TT-ATCCCAATTT------------TTTA--CTCGGTTCCAATGG--CTGCT-T-TTGGCCA-CG-----------------------------------------------------------A--ACTCAATCGAAAA-------------T---CATTCTTGGCCTTTT-T---------------------------------------------------------------------------------------------------------------------------------------------------------------TGGGCGGGTAATTTGAT--GTGTGTGT----TGCTCATGTTTC-----GA------CTTTTGGCTCATTGG--------------------------------------ATC-ATT-GCAGCAGCGACAATGTCTCATTGGCCTCGGACCTGACCAGAATGTATGTGAGCGATG
droBia1 scf7180000302261:1043478-1043688 - GGCTGCCAA--------------------ACATT----------------------------------------------------------TG-CTCCCAG----------A-CTTCTTA--TTCGATTCCAATGG--CTGTT-T-TTGGCCA-CG-----------------------------------------------------------A--ACCCAATGGA-AA-------------TCGTCGTTCTTGGCCTTTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------TGGGCGGGTATTTTCATAAGTGTGTCT----TGCTCATGTTTC-----GA------CTTTTGGCTCAT--G--------------------------------------ATC-ATT-GCAGCAGCGATAATGTCTCTCTGGCCTCGGACCTGACCAGAATGTATGTGAGCGACG
droTak1 scf7180000415438:411745-411953 + GGCTGCCGA--------------------ACATT----------------------------------------------------------TTGATCCCGTTTT------------TTTG--TGCGATTTCAATGG--CTTTT-T-TTGGCCA-CC-----------------------------------------------------------AAAAATCAATGGA-AA-------------T---CGTTCTTGGCCTTTT-T---------------------------------------------------------------------------------------------------------------------------------------------------------------TGGGCGGGTAATTTCTTAAGTGTGTTT----TGCTCATGTCTC-----GA------CTTTTGGCTCAT--G--------------------------------------ATC-ATT-GCAGCAGCGATAATGTCTCTTTGGCCTCGGACCTAACCAGAATGTATGTGAGCGATG
droEug1 scf7180000409554:2593954-2594158 + GGCTACCAA--------------------GCATT----------------------------------------------------------TT-ATCCCAT--------------------------TTTCGATGC--CTTTT-T-TTGGCCA-CA-----------------------------------------------------------A--ACTCAATGGA-AA-------------T---TGTTCTTGGCCTTTTTT----------------------------------------------------------------------------------------------------------TT---------------------------------------------------TTGGCGGCTAATCTTAT--GTGTGTGTTTGTTGCTCATGTTTC-----GATTTTCGCTTTTGGCTCAT--G--------------------------------------ATC-ATT-GCAGCAGCGACAATGTCTCTTTGACCTCGGACCTGACCAGAATGTATGTGAGCGACG
dm3 chr2L:3494569-3494747 - GGCTGGCAA--------------------ACGTTTT-------------------------------------------------------------C-CAGT-T------------CGTATGCGCGATTTCAATGG--CTCTTTT-TTGGCCA-CC-----------------------------------------------------------A-------------AA-------------T---TGTTCTTGGCCTTTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT--GTGTGTG-----TGCTCATGTTTC-----GT------CTTTTGGCTCAT--G--------------------------------------ATC-ATT-GCAGCAGCGACAATGTCTCTTTGGCCTCGGACCTGACCAGAATGTATGTGAGCGATG
droSim2 2l:3354180-3354375 - GGCTGGCAA--------------------ACATATT-------------------------------------------------------------CACAGT-T------------TGTA--TGCGATTTCAATGG--CTCTTTT-TTGGCCA-CC-----------------------------------------------------------A-------------AA-------------T---TGTTCTTGTCCTTTTTT-----------------------------------------------------------------------------------------------------------TCT-------------------------------G-----------------TGGGCGAGTATTCTTTT--GTGTGTG-----TGCTCATGTTTC-----GT------CTTTTGGCTCAT--G--------------------------------------ATC-ATT-GCAGCAGCGACAATGTCTCTTTGGCCTCGGACCTGACCAGAATGTATGTGAGCGATG
droSec2 scaffold_5:1596851-1597047 - GGCTGGCGA--------------------ACATTTT-------------------------------------------------------------CACAGT-T------------TGTA--TGCGATTTCAATGG--CTCTTTT-TTGGCCA-CC-----------------------------------------------------------A-------------AA-------------T---TGTTCTTGTCCTTTTTT----------------------------------------------------------------------------------------------------------TTCT-------------------------------G-----------------TGGGCGAGTATTCTTTT--GTGTGTG-----TGCTCATGTTTC-----GT------CTTTTGGCTCAT--G--------------------------------------ATC-ATT-GCAGCAGCGACAATGTCTCTTTGGCCTCGGACCTGACCAGAATGTATGTGAGCGATG
droYak3 2L:3482831-3483064 - GGCTGGCAA--------------------ACATTTT-------------------------------------------------------------CCCAGT-T------------TGTA--TGCGATTTCAATGC--CTCTTTT-TTGGCCA-CC-----------------------------------------------------------A-------------AA-------------T---TGTTCTTGGCCATTTTT------------------------------------------------------------------------TTGATTTTTTGATT-TGTTTT----TTTTG--TT------------------------------------TGTGGTTGTTGT-----TAGGCGAGTAATCTTTT--GTGTGTGC-TG-TGCTCATGTTTC-----GT------CTTTTGGCTCAC--G--------------------------------------ATC-ATT-GCAGCAGCGACAATGTCTCTTTGGCCTCGGACCTGACCAGAATGTATGTGAGCGATG
droEre2 scaffold_4929:3529482-3529675 - GGCTGGCAA--------------------TGATTTT-------------------------------------------------------------CCCAGT-T------------TGTA--TGCGATTTGTATGG--CTCTT-T-TTGGCCCGCC-----------------------------------------------------------A-------------TT-------------T---TTTTTTTTTGGTTTTTT-------------------------------------------------------------------------------------------------------------G-------------------------------G-----------------TGGGCGAGTTATCATTT--GAGAGTG-----TGCTCATGTTTC-----GT------CTTTTGGCTCAT--G--------------------------------------ATC-ATT-GCAGCAGCGACAATGTCTCTTTGGCCTCGGACCTGACCAGAATGTATGTGAGCGATG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
AACCGA---AAATGGGAGGCAACTCCAAA-AA-----------------GA-TTTATC------T--------------------AAGCACTTTTATTTCTTGGTTTCTTAAGATTTCTTTTTCAAGATATCGTTGGAACTT--TTTTTGG-AT-GC-----------------------------------------------------------A-------------AA-------------T---TATGCTTAGATT----TTGGGCTG-------------------------------------------------------------GGTT--------T-TATTTTTTTTT----GTTCG--TT------------------------------------TGGGGT-CTTGTGAAGA---------------------------TTGTTTCTCATGA-------T---G---------TTCTCAT--G--------------------------------------ATT-ATT----GCAGCGACAATGGTTCGGTGGCTTCCGATCTGACGCGAATGTATGTGAGCGATGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....A---AAATGGGAGGCAACTCCAAA-AA-----------------G.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000010
........................................................................................................................TTTCAAGATATCGTTGGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
.............................................................................................................................................................................................................................................................CTTAGATT----TTGGGCTG-------------------------------------------------------------GGTT--------T-TAT........................................................................................................................................................................................................................................................2411.001000001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-------T---G---------TTCTCAT--G--------------------------------------ATT-ATT----GC....................................................2011.001010000
.......................................................ATC------T--------------------AAGCACTTTTATTTCTTGGTTTCTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTGACGCGAATGTATGTGAGC....2411.001010000
...........................................................................................................................................................................................................................................................................................................................................................................GTTCG--TT------------------------------------TGGGGT-CTTGTGAG................................................................................................................................................................................2111.001000001
............................................................................................................................................................................................................................................................................................................................................................................TTCG--TT------------------------------------TGGGGT-CTTGTGAAGA---------------------------T..................................................................................................................................................2311.001000100
...............................................................................................................................ATATCGTTGGAACTT--TTTTTGG-...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
dp5
AACCGA---AAATGGGAGGCAACTCCAAA-AA-----------------GA-TTTATC------T--------------------AAGCACTTTTATTTCTTGGTTTCTTAAGATTTCTTTTTCAAGATATCGTTGGAACTCTT-T-TTGG-AT-GC-----------------------------------------------------------A-------------AA-------------T---TATGCTTAGATT----TTGGGCTG-------------------------------------------------------------GGTT--------T-TATTTT--TTT----CTTCG--TT------------------------------------TGGGGT-CTTGTGAAGA---------------------------TTGTTTCTCATGA-------T---G---------TTCTCAT--G--------------------------------------ATT-ATT----GCAGCGACAATGTTTCGGTGGCTTCCGATCTGACGCGAATGTATGTGAGCGATGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................................................CTTTTTCAAGATATCGTTGGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030300000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGTGGCTTCCGATCTGACG...................2212.0020200000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTTCCGATCTGACGC..................1812.0020200000000
...................................................................................................................TTCTTTTTCAAGATATCGTTGGAACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTCGGTGGCTTCCGATCTGAC....................2611.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGCGAATGTATGTGAGC....1911.0010100000000
....................................................................................................................................................TGG-AT-GC-----------------------------------------------------------A-------------AA-------------T---TATGCTTAGATT----TTGGG.........................................................................................................................................................................................................................................................................................................................................2811.0010100000000
......................................................................................................GGTTTCTTAAGATTTCTTTTTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
...............................................................................................................................ATATCGTTGGAACTCTT-T-TTGG-AT-GC-----------------------------------------------------------A-------------A................................................................................................................................................................................................................................................................................................................................................................................2811.0011000000000
.........................................................................................................................................................T-GC-----------------------------------------------------------A-------------AA-------------T---TATGCTTAGATT----TTGGGC........................................................................................................................................................................................................................................................................................................................................2511.0010100000000
...............................................................................................................................ATATCGTTGGAACTCTT-T-TTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATT----GCAGCGACAATGTTTCGGTGGCT...............................2611.0010100000000
.....................................................................................................................CTTTTTCAAGATATCGTTGGAACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGAAGA---------------------------TTGTTTCTCATGA-------T---G---------TT...............................................................................................................2511.0010000001000
.........................................................................................................................TTCAAGATATCGTTGGAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
...............................................................................................................................ATATCGTTGGAACTCTT-T-TTGG-AT-GC-----------------------------------------------------------...............................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
..........AATGGGAGGCAACTCCAAA-AA-----------------G.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.......................................................................................................................................................................................................................................A-------------T---TATGCTTAGATT----TTGGGCTG-------------------------------------------------------------.........................................................................................................................................................................................................................................................................2211.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................GGGT-CTTGTGAAGA---------------------------TTGTTTCT...........................................................................................................................................2211.0010100000000
...................................................................................................................TTCTTTTTCAAGATATCGTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................TT------------------------------------TGGGGT-CTTGTGAAGA---------------------------TT.................................................................................................................................................2011.0010000001000
...............................................................................................................................ATATCGTTGGAACTCTT-T-TTGG-...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------------------TTGTTTCTCATGA-------T---G---------TTCTCAT--G--------------------------------------.................................................................2411.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGACGCGAATGTATGTGAGC....2311.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................CG--TT------------------------------------TGGGGT-CTTGTGAAGA---------------------------TTGTTTCT...........................................................................................................................................2811.0010000001000
.......................................................................................................................TTTTCAAGATATCGTTGGAACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................GGT-CTTGTGAAGA---------------------------TTGTTTCTCAT........................................................................................................................................2411.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAATGTTTCGGTGGCTTCCGATC........................2511.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................TTCG--TT------------------------------------TGGGGT-CTTGTGAAGA---------------------------TTGTT..............................................................................................................................................2711.0010100000000
............................................................................................................................AAGATATCGTTGGAACTCTT-......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTCCGATCTGACGCGAATGTATGT........2711.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................TT----CTTCG--TT------------------------------------TGGGGT-CTTGA...................................................................................................................................................................................2011.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTGACGCGAATGTATGTGAGCGA..2611.0010000001000
...............................................................................................ATTTCTTGGTTTCTTAAGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.......................................................................................................................................GGAACTCTT-T-TTGG-AT-GC-----------------------------------------------------------...............................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGATCTGACGCGAATG.............1911.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGATCTGACGCGAATGT............1911.0010100000000
.............................................................................................................................................................................................................................................................CTTAGATT----TTGGGCTG-------------------------------------------------------------GGTT--------.............................................................................................................................................................................................................................................................2011.0010001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTCGGTGGCTTCCGATCTGACGC..................2811.0010100000000
droWil2
AAACAA---AAATCCAAACAAAATAAAAA-ATTT-------------------------------------------------------------------------------------TT--TGGGGTTTGTT-------------TTGC-G-----------------------------------------------------------------------------TTTTACGATTGGAATT---TGTTGTTGTTTTGGTT-------------------------------------------------------------------------------TTTT-----T-----TATTTTT---------------------------------------------------------------------------C--ATATGTT-----TGCTA------------------------------TGGGGCTACATTCAACATTTAACGTAAATCCAAATCTTTGATTCTTAATCGCCAGCAACGACAATGTTTCGGTGGCTTCCGATTTGACGCGAATGTATGTCAGCGATGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................................................................................................................................................................................................................................................................................................................................................................ATTTTT---------------------------------------------------------------------------C--ATATGTT-----TGCTA------------------------------TGGGG.......................................................................................................2411.00101000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTAATCGCCAGCAACGA...............................................2111.00100100
...................................................................................................................................GTT-------------TTGC-G-----------------------------------------------------------------------------TTTTACGATTGGAATT---..............................................................................................................................................................................................................................................................................................................................................................2411.00100100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTTCCGATTTGACGC..................1911.00100001
droVir3
ATCCAACCAAAATTGGAGGCGGTTGCATG-T-----CCAACTCTAATATTA-TTTATT------TCCATTAGGCTACCTT--TAAAGGCGC----------------------------------------------GA--CT-ATTTGAA-AT-GCA----------------------------------------------------------A-------------AA-------------T---ACTTATCGG-----------GCGG-------------------------------------------------------------TATTTTGCTTGTTT-----T-----TCTTTTTCA--TTTTGAACA-----AATCGATTTTCATTCAATTTCGT-CGGGTT-TCTA-------------CCAAGTTAA---------------TGCTTATGTTTGCCGATGA------CTTTAACATC------------------------------------TTCAATTTTA-ATC-GCAGCAGCGACAATGTGTCAGTGGCCTCGGACTTGACCCGCATGTATGTCAGCGATGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGACTTGACCCGCATGTATGT........2212.002000000000000000000000010000000100000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................TCAATTTCGT-CGGGTT-TCTA-------------CCAAGT.................................................................................................................................................................2612.002000000000000000000000001001000000000000000000000000000000000000
.............................................................................................................................................................A----------------------------------------------------------A-------------AA-------------T---ACTTATCGG-----------GCGG-------------------------------------------------------------T........................................................................................................................................................................................................................................................................1912.002000000000000000000000000000010000000000000000000000000000000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAA---------------TGCTTATGTTTGCCGATGA------CTTT..................................................................................................................2712.002000000000000000000000000002000000000000000000000000000000000000
................................................................................................................................................ATTTGAA-AT-GCA----------------------------------------------------------A-------------AA-------------T---ACTTATCGG-----------GC........................................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
................................................................TCCATTAGGCTACCTT--TAAAGGCGC----------------------------------------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000100000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCGACAATGTGTCAGTGGCCT..............................2411.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTA-ATC-GCAGCAGCGACAATGTGTC......................................2711.001000000000000000000000000001000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAATGTGTCAGTGGCCTC.............................2011.001000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCCGATGA------CTTTAACATC------------------------------------TTCAATT.................................................................2811.001000000000000000000000000001000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTA-ATC-GCAGCAGCGACAATGTGTCAGT...................................2811.001000000000000000000000000000100000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................T-----TCTTTTTCA--TTTTGAACA-----A......................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TA-------------CCAAGTTAA---------------TGCTTATGTTTGCCGA...............................................................................................................................2711.001000000000000000000000000001000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTA-ATC-GCAGCAGCGACAATGTGTCA.....................................2611.001000000000000000000000000001000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................TTCGT-CGGGTT-TCTA-------------CCAAGTTAA---------------TGCT...........................................................................................................................................2811.001000000000000000000000000000100000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGTTAA---------------TGCTTATGTT.....................................................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................GAACA-----AATCGATTTTCATT.........................................................................................................................................................................................................1911.001000000000000000000100000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................TTTCATTCAATTTCGT-CGGGTT-TCTA-------------C......................................................................................................................................................................2711.001000000000000000000000000001000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AA---------------TGCTTATGTTTGCCGATGA------C.....................................................................................................................2211.001000000000000000010000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACAATGTGTCAGTGGCCTCGGAC.........................2611.001000000000000000000000000000000000000000000000000000000000000001
....................................................................TTAGGCTACCTT--TAAAGGCGC----------------------------------------------GA--CT-.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000001000000000000000000000000000000000000000000000000
..................................................................................TAAAGGCGC----------------------------------------------GA--CT-ATTTGAA-AT-GCA----------------------------------------------------------A-------------.................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000001000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCCGATGA------CTTTAACATC------------------------------------TTCAAT..................................................................2611.001000000000000000000000000001000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................CGT-CGGGTT-TCTA-------------CCAAGTTAA---------------TGCTT..........................................................................................................................................2711.001000000000000000000000000000001000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTAA---------------TGCTTATGTTTGC..................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................TT-TCTA-------------CCAAGTTAA---------------TGCTTATGTTT....................................................................................................................................2611.001000000000000000000000000001000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA---------------TGCTTATGTTTGCCGATGA------CTT...................................................................................................................2511.001000000000000000000000000100000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTTA-ATC-GCAGCAGCGACAATG..........................................2511.001000000000100000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACATC------------------------------------TTCAATTTTA-ATC-GCAGCAG..................................................2711.001000010000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA---------------TGCTTATGTTTGCCGATGA------CTTT..................................................................................................................2611.001000000000000000000000000001000000000000000000000000000000000000
........................................................................................................................................................AT-GCA----------------------------------------------------------A-------------AA-------------T---ACTTATCGG-----------GCGG-------------------------------------------------------------TAT......................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATTTTA-ATC-GCAGCAGCGACAATG..........................................2711.001000000000000000000000000010000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCTCGGACTTGACCCGCATGT............2311.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACATC------------------------------------TTCAATTTTA-ATC-GCAGCAGC.................................................2811.001000010000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGTGGCCTCGGACTT.......................1811.001000000000000000000000100000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTCGGACTTGACCCGCAT..............2011.001000000000000000000000100000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTA-ATC-GCAGCAGCGACAATGTGTCAG....................................2711.001000000000000000000000000000100000000000000000000000000000000000
......................................................................................................................................................A-AT-GCA----------------------------------------------------------A-------------AA-------------T---ACTTATCGG-----------GCGG-------------------------------------------------------------T........................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................CGG-------------------------------------------------------------TATTTTGCTTGTTT-----T-----TCTTTT..........................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
ATCCAACCAAAATTGGAGGCGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000100000000000000000000000000000000000000000
droMoj3
AGCCAA---AT-TTGGAGGCGGTTGCTTG-T-----CCAACTCTAATATTAATTTATTTATCTATCCATCGGGCGGTCTCAAAAAAGGCGC----------------------------------------------GT--CT-ATTTGGA-AT-GC-----------------------------------------------------------A-------------AA-------------T---CGG-----------------GTGCATTTGTATTTGGACACTGAAATTCTGTTAACTGATTTTATTTCAGATTATTTATTTATTTACATTTTGTTTGTTT-----T-----GCTTTTTTG--TT-----------------------------------------------------TGGGCTTGTTATTT--A--CCCAGTT-----TGCTAATGCTTGCCGATGT------CTTTTACATC------------------------------------TTCAATTCTC-ATC-GCAGCAGTGACAATGTCTCAGTGGCTTCCGACTTGACCCGCATGTATGTCAGCGATGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAATGTCTCAGTGGCTTCCGACT........................2616.006600000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACATC------------------------------------TTCAATTCTC-ATC-GCAGCAG..................................................2812.002200000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAATTCTC-ATC-GCAGCAGTGACA.............................................2512.002200000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTC-ATC-GCAGCAGTGACA.............................................2111.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTT--A--CCCAGTT-----TGCTAATGCT.....................................................................................................................................2411.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................T--A--CCCAGTT-----TGCTAATGCTTGCCGATGT------......................................................................................................................2811.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTCTCAGTGGCTTCCGA..........................2011.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTC-ATC-GCAGCAGTGACAATGTCTCAG....................................2911.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................T--A--CCCAGTT-----TGCTAATGCTTGCCGATG.............................................................................................................................2711.001100000
................................................................TCCATCGGGCGGTCTCAAAAAAGGCGC----------------------------------------------G.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGTCTCAGTGGCTTCCGA..........................2211.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCAGTGGCTTCCGACTTGACCCG.................2511.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--A--CCCAGTT-----TGCTAATGCTTGCCGAT..............................................................................................................................2711.001100000
......................................................................................................................................................................................................................................................................................................................................TTTATTTACATTTTGTTTGTTT-----T-----GCT.............................................................................................................................................................................................................................................2611.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT--A--CCCAGTT-----TGCTAATGCTTGCCGATG.............................................................................................................................2911.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCAGTGGCTTCCGACT........................1911.001100000
.......................................................ATTTATCTATCCATCGGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
..............................................................................................................................................................................................................................................................................................................................................CATTTTGTTTGTTT-----T-----GCTTTTTTG--T....................................................................................................................................................................................................................................2511.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGACTTGACCCGCATGTATGTC.......2411.001100000
droGri2
AATCCA---AAATTGGAGGCGGTTGCATG-T-----CGAACTCTAATATTA-TTTAAT------TGTGTGGTGCTGCCGT--TAAAGGCGC----------------------------------------------GG--CT-ATTTGGG-AT-GGAAATTACTAACAGGGTTCTTCATTTATGCTTAGTATAAATGTTGTTTTTTTTTGTTGTTACAAGTTAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAC--CGATGTT-----TGCTAATGTTTGCCGATGT------CTTTAACATC------------------------------------TTCAATTCTT-ATC-GCAGCAGCGACAATGTTTCAGTGGCTTCGGACTTGACCCGCATGTATGTCAGTGATGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
GGCTTT---AAATGGAAGGCGGCTCCAAG-CATT----------------------------------------------------------TG-TTACCAA----------A-ATTTTTA--------------------------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------------------------------------TTTTCCTATTTTTGGCAAATGAATGCGATTTT-----------------------------------------------A--ATGCAAA-----TTTTCTTG---------------------------------------------------------------TT---TTATT-TTT-GCAGCAGCGATAATGTCTCAGTGGCCTCGGATCTGACCAGAATGTATGTAAGCGATGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGACCAGAATGTATGTAAGCGAT.2411.001000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGCCTCGGATCTGACC...................1911.001000001
droBip1
GGCTTT---AAATGGAAGGCGGCTCCAAG-CATT----------------------------------------------------------TT-TCACCAA----------A-TTTTTT--------------T------------------------------------------------------------------------------------------------------------------------A----------------------------------------------------------------------------------------------------------TTTTCCTATTTTTGGCAAACGAATGCGATTTT-----------------------------------------------A--ATG-------------CAAATTTT-----GT------G---------------------------------------------TT---TTATT-TTT-GCAGCAGCGATAATGTCTCTGTGGCCTCGGATCTAACCAGAATGTATGTGAGCGATGSizeHit CountTotal NormTotal
No Reads
droKik1
AACTGA---AAATGG-----------------TTAG-------------------------------------------------------------GACTTT-T------------TATA--TA-GATTTCTTTGT-------------------------------------------------------------------------------------------------------------------------TTTTTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGTGGGTAATTTAAT--GTGTGTGT----TGCTCATGTTTC-----CA------CTTTTGGCTCATTGG-------------------------------CT---CCATT-GCA-GCAGCAACGACAATGTCTCGGTGGCCTCCGACCTGACCCGCATGTATGTAAGCGATGSizeHit CountTotal NormTotal
No Reads
droFic1
G------------------CGGCTCCGATTCAGT----------------------------------------------------------TT-TTGTTCA----------ATTTTTTTTTCGACGACTTCAGTGG--------------CCA----------------------------------------------------------------------GTGGA-AA-------------T---TGTTCTTGGCCTTTATT---------------------------------------------------------------------------------------------------------------------------------------------------------------TGGGCGGGTAATTTGAT--GTGTGTGT----TGCTCATGTTTC-----GA------CTTTTGGCTCGT--G--------------------------------------ATC-ATT-GCAGCAGCGACAATGTGTCCATAGCCTCCGACCTGACCAGAATGTATGTGAGCGATGSizeHit CountTotal NormTotal
No Reads
droEle1
T-------------------------------------------------------------------------------------------------------T------------TTAA--CTCAATTTCATTGG--CTGTT-T-TTGGCCG-GG-----------------------------------------------------------A-------------AA---------------------CTTGGCCTTTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------TGGGCGGGTAATTTGAT--GTGTGTGT----TGCTCATGTTTC-----GA------CTTTTGGCTCATTGG--------------------------------------ATC-ATT-GCAGCAGCGACAATGTCTCATTGGCCTCGGATCTGACCAGAATGTATGTGAGTGATGSizeHit CountTotal NormTotal
No Reads
droRho1
GGCTGGCAA--------------------ACATT----------------------------------------------------------TT-ATCCCAATTT------------TTTA--CTCGGTTCCAATGG--CTGCT-T-TTGGCCA-CG-----------------------------------------------------------A--ACTCAATCGAAAA-------------T---CATTCTTGGCCTTTT-T---------------------------------------------------------------------------------------------------------------------------------------------------------------TGGGCGGGTAATTTGAT--GTGTGTGT----TGCTCATGTTTC-----GA------CTTTTGGCTCATTGG--------------------------------------ATC-ATT-GCAGCAGCGACAATGTCTCATTGGCCTCGGACCTGACCAGAATGTATGTGAGCGATGSizeHit CountTotal NormTotal
No Reads
droBia1
GGCTGCCAA--------------------ACATT----------------------------------------------------------TG-CTCCCAG----------A-CTTCTTA--TTCGATTCCAATGG--CTGTT-T-TTGGCCA-CG-----------------------------------------------------------A--ACCCAATGGA-AA-------------TCGTCGTTCTTGGCCTTTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------TGGGCGGGTATTTTCATAAGTGTGTCT----TGCTCATGTTTC-----GA------CTTTTGGCTCAT--G--------------------------------------ATC-ATT-GCAGCAGCGATAATGTCTCTCTGGCCTCGGACCTGACCAGAATGTATGTGAGCGACGSizeHit CountTotal NormTotal
No Reads
droTak1
GGCTGCCGA--------------------ACATT----------------------------------------------------------TTGATCCCGTTTT------------TTTG--TGCGATTTCAATGG--CTTTT-T-TTGGCCA-CC-----------------------------------------------------------AAAAATCAATGGA-AA-------------T---CGTTCTTGGCCTTTT-T---------------------------------------------------------------------------------------------------------------------------------------------------------------TGGGCGGGTAATTTCTTAAGTGTGTTT----TGCTCATGTCTC-----GA------CTTTTGGCTCAT--G--------------------------------------ATC-ATT-GCAGCAGCGATAATGTCTCTTTGGCCTCGGACCTAACCAGAATGTATGTGAGCGATGSizeHit CountTotal NormTotal
No Reads
droEug1
GGCTACCAA--------------------GCATT----------------------------------------------------------TT-ATCCCAT--------------------------TTTCGATGC--CTTTT-T-TTGGCCA-CA-----------------------------------------------------------A--ACTCAATGGA-AA-------------T---TGTTCTTGGCCTTTTTT----------------------------------------------------------------------------------------------------------TT---------------------------------------------------TTGGCGGCTAATCTTAT--GTGTGTGTTTGTTGCTCATGTTTC-----GATTTTCGCTTTTGGCTCAT--G--------------------------------------ATC-ATT-GCAGCAGCGACAATGTCTCTTTGACCTCGGACCTGACCAGAATGTATGTGAGCGACGSizeHit CountTotal NormTotal
No Reads
dm3
GGCTGGCAA--------------------ACGTTTT-------------------------------------------------------------C-CAGT-T------------CGTATGCGCGATTTCAATGG--CTCTTTT-TTGGCCA-CC-----------------------------------------------------------A-------------AA-------------T---TGTTCTTGGCCTTTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT--GTGTGTG-----TGCTCATGTTTC-----GT------CTTTTGGCTCAT--G--------------------------------------ATC-ATT-GCAGCAGCGACAATGTCTCTTTGGCCTCGGACCTGACCAGAATGTATGTGAGCGATGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAT--G--------------------------------------ATC-ATT-GCAGCAGCGACAATG..........................................26112.001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATT-GCAGCAGCGACAATGTC........................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGGCTCAT--G--------------------------------------ATC-ATT-GCAGCAGC.................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-----GT------CTTTTGGCTCAT--G--------------------------------------ATC-ATT-GCAGC....................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------CTTTTGGCTCAT--G--------------------------------------ATC-ATT-GCAGC....................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTC-----GT------CTTTTGGCTCAT--G--------------------------------------ATC-ATT-.........................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......AA--------------------ACGTTTT-------------------------------------------------------------C-CAGT-T------------CGTATGCGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................C-CAGT-T------------CGTATGCGCGATTTCAATGG--C...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-GCAGCAGCGACAATGTCTCTTTGGC................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTG-----TGCTCATGTTTC-----GT------CTTTTGGC..............................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTC-----GT------CTTTTGGCTCAT--G--------------------------------------ATC-A............................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-ATT-GCAGCAGCGACAATGTCTCT.....................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................T--GTGTGTG-----TGCTCATGTTTC-----GT------CT....................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTCAT--G--------------------------------------ATC-ATT-GCAGCAGCGACAA............................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGGCCTCGGACCTGAC....................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................A-CC-----------------------------------------------------------A-------------AA-------------T---TGTTCTTGGCCTTTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT--...........................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAATGTCTCTTTGGCCTCGGACCTGA.....................2811.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAT--G--------------------------------------ATC-ATT-GCAGCAGC.................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-----GT------CTTTTGGCTCAT--G--------------------------------------ATC-ATT-GCA......................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAGAATGTATGTGAGCG...1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...............................................................................................................................ATTTCAATGG--CTCTTTT-TTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGTCTCTTTGGCCTCGGACC........................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTCATGTTTC-----GT------CTAGG.................................................................................................................19160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
droSim2
GGCTGGCAA--------------------ACATATT-------------------------------------------------------------CACAGT-T------------TGTA--TGCGATTTCAATGG--CTCTTTT-TTGGCCA-CC-----------------------------------------------------------A-------------AA-------------T---TGTTCTTGTCCTTTTTT-----------------------------------------------------------------------------------------------------------TCT-------------------------------G-----------------TGGGCGAGTATTCTTTT--GTGTGTG-----TGCTCATGTTTC-----GT------CTTTTGGCTCAT--G--------------------------------------ATC-ATT-GCAGCAGCGACAATGTCTCTTTGGCCTCGGACCTGACCAGAATGTATGTGAGCGATGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTGGCCTCGGACCTGACCAGAA...............2513.00300000020000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCTCTTTGGCCTCGGACCTGACCAGAA...............2913.00300000030000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGTTTC-----GT------CTTTTGGCT.............................................................................................................2012.00220000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGTTTC-----GT------CTTTTGGCTC............................................................................................................2111.00110000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTCAT--G--------------------------------------ATC-ATT-GCAGCAGCGACAA............................................2811.00100000000000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCGAGTATTCTTTT--GTGTGTG-----TGC............................................................................................................................................2711.00100000000001000000
.................................................................................................CACAGT-T------------TGTA--TGCGATTTCAATGG--C...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCCTCGGACCTGACCAGAATG.............2511.00100000000001000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTGGCCTCGGACCTGACCAGA................2411.00100000010000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGACAATGTCTCTTTGGCCTCG............................2411.00100000000000001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC-----GT------CTTTTGGCTCAT--G--------------------------------------ATC-ATT-GC.......................................................2611.00100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-GCAGCAGCGACAATGTCTCTTTGGC................................2711.00100000010000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGTATGTGAGCGATG1811.00100001000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................T--GTGTGTG-----TGCTCATGTTTC-----GT------CTT...................................................................................................................2511.00100000000000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTG-----TGCTCATGTTTC-----GT------CTTTTGGC..............................................................................................................2611.00100000010000000000
droSec2
GGCTGGCGA--------------------ACATTTT-------------------------------------------------------------CACAGT-T------------TGTA--TGCGATTTCAATGG--CTCTTTT-TTGGCCA-CC-----------------------------------------------------------A-------------AA-------------T---TGTTCTTGTCCTTTTTT----------------------------------------------------------------------------------------------------------TTCT-------------------------------G-----------------TGGGCGAGTATTCTTTT--GTGTGTG-----TGCTCATGTTTC-----GT------CTTTTGGCTCAT--G--------------------------------------ATC-ATT-GCAGCAGCGACAATGTCTCTTTGGCCTCGGACCTGACCAGAATGTATGTGAGCGATGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCTTTGGCCTCGGACCTGACCAG.................2611.0011000
..................................TT-------------------------------------------------------------CACAGT-T------------TGTA--TGCGATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC-----GT------CTTTTGGCTCAT--G--------------------------------------ATC-ATT-GCAG.....................................................2811.0011000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCCTCGGACCTGACC...................1911.0010100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTC-----GT------CTTTTGGCTCAT--G--------------------------------------ATC-AT...........................................................2611.0011000
droYak3
GGCTGGCAA--------------------ACATTTT-------------------------------------------------------------CCCAGT-T------------TGTA--TGCGATTTCAATGC--CTCTTTT-TTGGCCA-CC-----------------------------------------------------------A-------------AA-------------T---TGTTCTTGGCCATTTTT------------------------------------------------------------------------TTGATTTTTTGATT-TGTTTT----TTTTG--TT------------------------------------TGTGGTTGTTGT-----TAGGCGAGTAATCTTTT--GTGTGTGC-TG-TGCTCATGTTTC-----GT------CTTTTGGCTCAC--G--------------------------------------ATC-ATT-GCAGCAGCGACAATGTCTCTTTGGCCTCGGACCTGACCAGAATGTATGTGAGCGATGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCTCTTTGGCCTCGGAC.........................2013.00321000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGTCTCTTTGGCCTCGGAC.........................2211.00110000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCGACAATGTCTCTTTGGCCTCG............................2511.00101000000000
.....................................................................................................................................................................................................................................................................................................................................................................TT----TTTTG--TT------------------------------------TGTGGTTGTTGT-----TAGGC.........................................................................................................................................................................2611.00100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCTTTGGCCTCGGACCT.......................2011.00101000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCTTTGGCCTCGGACCTGACCA..................2511.00101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCTTTGGCCTCGGACCT.......................1911.00101000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGGCCTCGGACCTGACCAGA................2311.00101000000000
.................................................................................................................................................................................................................................................................................................................................................................TGTTTT----TTTTG--TT------------------------------------TGTGGTTGTTGT-----T.............................................................................................................................................................................2611.00100000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCCTCGGACCTGACC...................1911.00101000000000
...................................................................................................................................................................................................................................................................................................................................................................................T------------------------------------TGTGGTTGTTGT-----TAGGCG........................................................................................................................................................................1911.00100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTTTC-----GT------CTTTTGGCTC............................................................................................................2011.00110000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGGCTCAC--G--------------------------------------ATC-ATT-GCAGC....................................................2311.00101000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCTTTGGCCTCGGACCTGACCAGAAT..............2911.00110000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAATGTCTCTTTGGCCTCGGAC.........................2411.00110000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGTCTCTTTGGCCTCGGACCT.......................2411.00101000000000
..................................TT-------------------------------------------------------------CCCAGT-T------------TGTA--TGCGATTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001000000
droEre2
GGCTGGCAA--------------------TGATTTT-------------------------------------------------------------CCCAGT-T------------TGTA--TGCGATTTGTATGG--CTCTT-T-TTGGCCCGCC-----------------------------------------------------------A-------------TT-------------T---TTTTTTTTTGGTTTTTT-------------------------------------------------------------------------------------------------------------G-------------------------------G-----------------TGGGCGAGTTATCATTT--GAGAGTG-----TGCTCATGTTTC-----GT------CTTTTGGCTCAT--G--------------------------------------ATC-ATT-GCAGCAGCGACAATGTCTCTTTGGCCTCGGACCTGACCAGAATGTATGTGAGCGATGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCTCTTTGGCCTCGGACCTGACC...................2611.0010000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGGACCTGACCAGAATGTATGTGAGC....2811.0010000100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGACCTGACCAGAATGTATGT........2211.0010000100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGGACCTGACCAGAATGTATGTGAG.....2711.0010000010

Generated: 06/08/2015 at 02:52 PM