ID:

dpe_57

 Coordinate:

scaffold_5:3483486-3483549 -

 Confidence:

Known Ortholog

 Class:

Canonical miRNA

 Genomic Locale:

intron

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-37.5 -37.0 -36.9

Flybase annnotation

intron [Dper\GL25684-in]

No Repeatable elements found

Sense Strand Reads

TGTGCGATTAGAGTTATCAATAGGCAGGTCCTCTCAAAATAATCGGGCACCTAAGTAGTTGATACAAGGGCGATAATGTAAAAGAACTTTCGCATTGTGTGACCTACTTAAATGCCCGATTGTTTCAAGCAACCTCTAAAATCTACCTGGAGTAGCCCCAAATT

***********************************.(((((((((((((..(((((((...((((((..((((....((......))..)))).))))))...)))))))..)))))))))))))...************************************ 		Read size # Mismatch Hit Count Total Norm Total M021

embryo

 V042

embryo

 M042

female body

 V057

head

 V050

head
..................................................CTAAGTAGTTGATACAAGGGCGA........................................................................................... 23 0 1 877.00 877 391 440 23 22 1
..................................................CTAAGTAGTTGATACAAGGGC............................................................................................. 21 0 1 138.00 138 121 17 0 0 0
...........................................................................................GCATTGTGTGACCTACTTAAAT................................................... 22 0 1 98.00 98 31 63 4 0 0
..................................................CTAAGTAGTTGATACAAGGGCG............................................................................................ 22 0 1 63.00 63 49 12 1 1 0
..................................................CTAAGTAGTTGATACAAGGGCGG........................................................................................... 23 1 1 55.00 55 54 1 0 0 0
...............................TCTCAAAATAATCGGGCAC.................................................................................................................. 19 0 1 22.00 22 19 2 1 0 0
...................................................TAAGTAGTTGATACAAGGGCGA........................................................................................... 22 0 1 18.00 18 4 12 2 0 0
..................................................CTAAGTAGTTGATACAAGGGCGC........................................................................................... 23 1 1 15.00 15 10 5 0 0 0
..............................CTCTCAAAATAATCGGGCAC.................................................................................................................. 20 0 1 9.00 9 9 0 0 0 0
.................................................CCTAAGTAGTTGATACAAGGGCG............................................................................................ 23 0 1 7.00 7 4 0 2 1 0
...................................................TAAGTAGTTGATACAAGGGCGAT.......................................................................................... 23 0 1 6.00 6 4 2 0 0 0
..................................................CTAATTAGTTGATACAAGGGCGAT.......................................................................................... 24 1 1 5.00 5 5 0 0 0 0
...........................................................................................GCATTGTGTGACCTACTTAAA.................................................... 21 0 1 5.00 5 2 3 0 0 0
.........................................................................TAATGTAAAAGAACTTTC......................................................................... 18 0 1 4.00 4 4 0 0 0 0
..................................................CTAAGTAGTTGATACAAGGGAGA........................................................................................... 23 1 1 4.00 4 0 4 0 0 0
..................................................CTAAGTAGTTGATACAAGG............................................................................................... 19 0 1 4.00 4 1 3 0 0 0
..................................................CTAAGTAGTTGATACAAGGG.............................................................................................. 20 0 1 4.00 4 1 2 1 0 0
..................................................CTAAGTATTTGATACAAGGGCGA........................................................................................... 23 1 1 4.00 4 4 0 0 0 0
..................................................CTAAGTAGTTGATACAAGGGCGAC.......................................................................................... 24 1 1 4.00 4 4 0 0 0 0
.........................................................................................TCGCATTGTGTGACCTACTTAAA.................................................... 23 0 1 3.00 3 0 3 0 0 0
..................................................CTAAGTAGTTGATACAAGGGCGT........................................................................................... 23 1 1 3.00 3 1 2 0 0 0
............................................................................................CATTGTGTGACCTACTTAAATG.................................................. 22 0 1 3.00 3 3 0 0 0 0
..................................................TTAAGTAGTTGATACAAGGGCGA........................................................................................... 23 1 1 3.00 3 0 3 0 0 0
..................................................CTAAGTAGTTGATAAAAGGGCGA........................................................................................... 23 1 1 3.00 3 0 3 0 0 0
..................................................CTAAGGAGTTGATACAAGGGCGA........................................................................................... 23 1 1 2.00 2 0 2 0 0 0
.................................................CCTAAGTAGTTGATACAAGGGC............................................................................................. 22 0 1 2.00 2 2 0 0 0 0
................................CTCAAAATAATCGGGCAC.................................................................................................................. 18 0 1 2.00 2 2 0 0 0 0
..................................................CTAAGCAGTTGATACAAGGGCGA........................................................................................... 23 1 1 2.00 2 0 2 0 0 0
........................................................................................TTCGCATTGTGTGACCTACTTAAA.................................................... 24 0 1 2.00 2 0 2 0 0 0
..................................................CTAAGTAGTTGATACAAGGGTGG........................................................................................... 23 2 1 2.00 2 2 0 0 0 0
..................................................CTAAGTAGTTGATACAAGGGG............................................................................................. 21 1 1 2.00 2 2 0 0 0 0
........................................................................................TTCGCATTGTGTGACCTACTTA...................................................... 22 0 1 2.00 2 0 2 0 0 0
.......................................................TAGTTGATACAAGGGCGA........................................................................................... 18 0 1 2.00 2 1 1 0 0 0
..................................................CTAAGTAGTTGATTCAAGGGCGA........................................................................................... 23 1 1 2.00 2 0 2 0 0 0
..................................................CTAAGTAGTTAATACAAGGGCGA........................................................................................... 23 1 1 1.00 1 0 1 0 0 0
..................................................CTAAGGAGTTGATACAAGGGC............................................................................................. 21 1 1 1.00 1 1 0 0 0 0
..................................................CTAACTAGTTGATACAAGGGCGA........................................................................................... 23 1 1 1.00 1 0 1 0 0 0
..................................................CTAAGTAGTCGATACAAGGGCGA........................................................................................... 23 1 1 1.00 1 1 0 0 0 0
..................................................CTAAGTAGTTGATACAAGGAC............................................................................................. 21 1 1 1.00 1 1 0 0 0 0
..................................................CTAAGTAGTTTATACAAGGGCGA........................................................................................... 23 1 1 1.00 1 0 1 0 0 0
..................................................ATAAGTAGTTGATACAAGGGCGA........................................................................................... 23 1 1 1.00 1 0 1 0 0 0
..................................................CTAAGTAGTTGATGCAAGGGC............................................................................................. 21 1 1 1.00 1 1 0 0 0 0
...........................................................................................GCATTGTGTGGCCTACTTAAAT................................................... 22 1 1 1.00 1 0 1 0 0 0
...............................TCTCGAAATAATCGGGCAC.................................................................................................................. 19 1 1 1.00 1 1 0 0 0 0
..................................................CTAAGTAGTTGATACAAGTGCCA........................................................................................... 23 2 1 1.00 1 0 1 0 0 0
..................................................TTAAGTAGTTGATACAAGGGCTT........................................................................................... 23 3 1 1.00 1 0 0 0 1 0
..................................................CTAAGTAGTTGATACAAGGGCGAA.......................................................................................... 24 1 1 1.00 1 0 1 0 0 0
..................................................CTAAGTAGTTGATACCAGGGCGA........................................................................................... 23 1 1 1.00 1 0 1 0 0 0
..................................................CTAAGGAGTTGATACAAGGGCG............................................................................................ 22 1 1 1.00 1 1 0 0 0 0
...........................................................................................GCATGGTGTGACCTACTTGAAT................................................... 22 2 1 1.00 1 0 1 0 0 0
........................................................................................TTCGCATTGTGTGACCTACTTAA..................................................... 23 0 1 1.00 1 0 1 0 0 0
..................................................CTAAGTAGTTGATACAAGGGCGCC.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0
..................................................CTGAGTAGGTGATACAAGGGCCA........................................................................................... 23 3 1 1.00 1 0 0 0 1 0
..................................................CTAAGATGTTGCTACAAGGGCGA........................................................................................... 23 3 1 1.00 1 0 1 0 0 0
..................................................CTAAGTAGTTGATACAACGGCGA........................................................................................... 23 1 1 1.00 1 0 1 0 0 0
..................................................CTAAGTAGTTGATTCAAGGGCGG........................................................................................... 23 2 1 1.00 1 0 1 0 0 0
..................................................CTAAGCAGTTGATACAAGGGCGAC.......................................................................................... 24 2 1 1.00 1 0 1 0 0 0
..................................................GTAAGTAGGTGATACAAGGGCGA........................................................................................... 23 2 1 1.00 1 0 1 0 0 0
..................................................CTAAGTAGGTGATACAAGGGCGA........................................................................................... 23 1 1 1.00 1 0 0 1 0 0
..................................................CAAAGTAGTTGATACAAGGGCGA........................................................................................... 23 1 1 1.00 1 0 1 0 0 0
..................................................CTAAGGAGTTGATAAAAGGGCGA........................................................................................... 23 2 1 1.00 1 0 1 0 0 0
..................................................CTAAGTAGTTGATACAAAGGCGA........................................................................................... 23 1 1 1.00 1 0 1 0 0 0
..................................................CTACGTAGTTGATACGAGGGCGA........................................................................................... 23 2 1 1.00 1 0 1 0 0 0
..................................................CTAAGCAGGTGATACAAGGGCGA........................................................................................... 23 2 1 1.00 1 0 1 0 0 0
.....................................................AGTAGTTGATACAAGGGCG............................................................................................ 19 0 1 1.00 1 0 1 0 0 0
..................................................CTAAGTAGTTGATACAAGGGCAA........................................................................................... 23 1 1 1.00 1 1 0 0 0 0
..................................................CTAAGTAGTTGATACACGGGCGA........................................................................................... 23 1 1 1.00 1 0 1 0 0 0
..................................................CTAAGAAGGTGATACAAGGGCGA........................................................................................... 23 2 1 1.00 1 0 1 0 0 0
..................................................CTAAGTAGTTGATACTAGGGCGA........................................................................................... 23 1 1 1.00 1 0 1 0 0 0
..................................................CTAGGTAGTTGATACAAGGGCGA........................................................................................... 23 1 1 1.00 1 1 0 0 0 0
...........................................................................................GCATTGTGTGACCTACTTCAAT................................................... 22 1 1 1.00 1 0 1 0 0 0
..................................................CTAAGTAGTTGAGACAAGGGCG............................................................................................ 22 1 1 1.00 1 1 0 0 0 0
..................................................CTACGTAGTTGATACAAGGGCGA........................................................................................... 23 1 1 1.00 1 0 1 0 0 0
..................................................CTAAGTAGTTGATCCACGGGCGC........................................................................................... 23 3 1 1.00 1 0 1 0 0 0
..................................................CTAAGTAGTTGATTAAAGGGCGA........................................................................................... 23 2 1 1.00 1 0 1 0 0 0
..................................................CTAAGTAGTTGACACAAGGGC............................................................................................. 21 1 1 1.00 1 1 0 0 0 0
..................................................CTAAGTAGTTGATACAAGGGCA............................................................................................ 22 1 1 1.00 1 0 1 0 0 0
.....................................................AGTAGTTGATACAAGGGCGA........................................................................................... 20 0 1 1.00 1 1 0 0 0 0
..................................................CGAAGTAGTTGATACACGGGCGA........................................................................................... 23 2 1 1.00 1 0 1 0 0 0
...........................................................................................GCATTGTATGACCTACTTAAAT................................................... 22 1 1 1.00 1 0 1 0 0 0
.........................................................................................TCGCATTCTCTGACCTACTTAAA.................................................... 23 2 1 1.00 1 0 1 0 0 0
...........................................................................................GCATTGTATGGCCTACTTAACT................................................... 22 3 1 1.00 1 0 1 0 0 0
..................................................CTAAGTAGTTGATACAGGGGCGA........................................................................................... 23 1 1 1.00 1 1 0 0 0 0
.........................................................................................TCGCATTGTGTAACCTACTTAA..................................................... 22 1 1 1.00 1 0 1 0 0 0
...........................................................................................GCATTGTGGGGCCTACTTAAA.................................................... 21 2 1 1.00 1 0 1 0 0 0
..................................................CTAAGTAGTTGATACAAGGACGA........................................................................................... 23 1 1 1.00 1 0 1 0 0 0
..................................................CTAAGTAGATGATACAAGGGCGA........................................................................................... 23 1 1 1.00 1 0 1 0 0 0
.....................................................AGTAGTTGATACAAGGGCGATAATG...................................................................................... 25 0 1 1.00 1 0 1 0 0 0
............................................................................................CATTGTGTGACCTACTTAAAT................................................... 21 0 1 1.00 1 0 1 0 0 0
..................................................CTAAGTATTTGATACAAGTGCGA........................................................................................... 23 2 1 1.00 1 0 1 0 0 0
..................................................CTAAGTAGTTGATACAAGGGTGT........................................................................................... 23 2 1 1.00 1 0 1 0 0 0
...........................................................................................GCATTGTGGGACCTACTTAAAT................................................... 22 1 1 1.00 1 1 0 0 0 0
..................................................CTAAGTAGTTCATACAAAGGCGA........................................................................................... 23 2 1 1.00 1 0 1 0 0 0
..................................................CTAAGTAGTTGAGACAAGGGC............................................................................................. 21 1 1 1.00 1 1 0 0 0 0
..................................................CTAAGTAGTTGATACAATGGCGT........................................................................................... 23 2 1 1.00 1 0 0 0 1 0
..................................................CTAAGTAGTTTATACAAGTGCGA........................................................................................... 23 2 1 1.00 1 0 1 0 0 0
..................................................CTGAGTAGTTGATACAAGGGCGA........................................................................................... 23 1 1 1.00 1 0 1 0 0 0
..................................................CTAAGTAGTTGATCCAAGGGCGA........................................................................................... 23 1 1 1.00 1 0 1 0 0 0
..................................................CTAAGGGGTTGATACAAGGGCGA........................................................................................... 23 2 1 1.00 1 0 1 0 0 0
..................................................CTAAGTAGTTGATACAAGGAATA........................................................................................... 23 3 1 1.00 1 0 1 0 0 0
...........................................................................................TCATTGTGTGACTTACTTAAAT................................................... 22 2 1 1.00 1 0 1 0 0 0
..................................................TTAAGTAGTTGATACAATGGCGT........................................................................................... 23 3 1 1.00 1 0 0 0 1 0
..................................................CTAAGTAGTTGATACAAATGCGA........................................................................................... 23 2 1 1.00 1 0 1 0 0 0
.............................................................................................ATTGTGTGACCTACTTAAAT................................................... 20 0 1 1.00 1 0 1 0 0 0
.............................CCTCTCAAAATAATCGGGCAC.................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0
..................................................CTAAGTATTTGATACAAGGGCGG........................................................................................... 23 2 1 1.00 1 1 0 0 0 0
........................................................................................................................................TAAAAACTCCCTGGAGGAGCC....... 21 3 2 0.50 1 0 0 0 1 0
........................................................................................................................................TAAAAACCTCCTGGAGTAGCC....... 21 3 2 0.50 1 0 0 0 1 0
...........................................................................................ACATTGTGTGTCCTACTTATAT................................................... 22 3 3 0.33 1 0 1 0 0 0

Anti-sense strand reads

ACACGCTAATCTCAATAGTTATCCGTCCAGGAGAGTTTTATTAGCCCGTGGATTCATCAACTATGTTCCCGCTATTACATTTTCTTGAAAGCGTAACACACTGGATGAATTTACGGGCTAACAAAGTTCGTTGGAGATTTTAGATGGACCTCATCGGGGTTTAA

************************************.(((((((((((((..(((((((...((((((..((((....((......))..)))).))))))...)))))))..)))))))))))))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total M021

embryo

 M042

female body

 V057

head

 V042

embryo
......................CTGTCCAGGAGAGTTTAA............................................................................................................................ 18 2 5 11.60 58 49 4 3 2
.......................CGTCCAGGAGAGTTTAAA........................................................................................................................... 18 2 3 0.67 2 2 0 0 0
............................................................................................GTAACACACTAGAAGAAT...................................................... 18 2 10 0.10 1 0 0 1 0
...........................................................................................................................................TTAGATGGTCCTCATCGTAG..... 20 3 13 0.08 1 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droPer2 scaffold_5:3483436-3483599 - dpe_57 confident TGTGCG------------ATTA-----------GAGT-TA-------------TC-A-AT-AG-GCAGGTCC-----T-----CTCAAAATAATCGGGCACCTAAGTAGTTGATACAA-GGGCGATAATGTAAAAGAA---CTTTCGCATTGTGTGACCTACTTAAATGCCCGATTGTTTCAAGCAACCTCTAA---AATCTACCTGGAG-------------------TAGCCCCAAATT
dp5 4_group1:1722894-1723057 + dps-mir-1002 Known_mirbase TGTGCG------------ATTA-----------GAGT-TA-------------TC-A-AT-AG-GCAGGTCC-----T-----CTCAAAATAATCGGGCACCTAAGTAGTTGATACAA-GGGCGATAATGTAAAAGAA---CTTTCGCATTGTGTGACCTACTTAAATGCTCGATTGTTTCAAGCAACCTCTAA---AATCTACCTGGAG-------------------TAGCCCCAAAGT
droWil2 scf2_1100000004585:545421-545553 + dwi_25 confident AGTATT------------GAAA----------AAGTG-T--------------TC-A-TTTGA-T-----CT-----GG-TCATT--GAAAAATGTTACACTTAAGTAGTTAATACAA-TGGCGATTCGTA-TTCCATTGTACATCGCATTGTGTGAGTTACTTTGTTGAGAGATTTTTCCAAACAAC-----------------------------------------------------
droVir3 scaffold_12723:5043891-5044013 - dvi-mir-1002 Known_mirbase TAAAAA------------ATTT-----------AAAT-CA-------------TT-G-CT-AA-GGC---TT-----GC-T--GCAATGAAAATTGAACGCTTAAGTAGTTAATACAA-GGGCGAGTTTTTT--CTT----GCATCGCATTGTGTGACCTACTTAAATGACAAATTTT--CAAG---------------------------------------------------------
droAna3 scaffold_12943:1815387-1815541 - dan_30 confident TAAGTTTCA---------A--------------GCAT-TTCAAGCCAAAGTTTTC-A-TA--A---ATATCT-----GT----GCAAACTAAATCATGTGTTTAAGTAGGCAATACAT-GGGCGACTAAATAAAAT-A---TACTCGCAATGTATAGCCTACATAACTAGTTGATTTTTGCAAGCATCCATTAC---AAATTA--------------------------------------
droBip1 scf7180000396728:1424321-1424459 + CTTCCA------------AACA-----------ATAT-TA-------------TC--T-----TC-----TTAATATA------CAACTTAAATCATGTGTTTAAGTAGGCAATACAT-GGGCGATTCATTA---------CATTCGCAATGTATGGCTTACATAACTAGTTGATTTTTGAAGTCATCCATTCC------------------AAAG-------------------TTAATT
droKik1 scf7180000302236:232127-232265 + TTCCTG------------ACCT-----------AAAA-TA-------------AG-G-AC-AT-ACATATCT-----GTTA--ATTAAGAAAATCGTATGTTTAAGTAGTGGATACAA-CGGCGATTGAACACAATAA---TCTTCGCAGTGTGTTACCTACTTAATTAGTCGATTTTTACAAGCGTCGTC--------------------------------------------------
droFic1 scf7180000453925:244782-244936 + TATACA------------AGAA----------AAGTG-T--------------TTTAT-----TT-----TTA-----ACATATT--AAAAAATCATACGTTTAAGTAGTGGATACAAAAGGCGATTTAT-ATAAAAA---AGTTCGCATTGTATGTCCTACTTAAGTGGCTGATTTTTTCAAGCAACATCAAA---AA----ATTGTT-TTAAAG--------------------TAAAT
droEle1 scf7180000491338:1356955-1357134 - GTGTTT----------AAAATA----CAATAAAAGA---------TTAT--------------GT-----TT-------TG--TTTAAAAAAATCATGTATTTAAGTAGTGGATACAAAAGGCGATTTACAAAATAAA---TGTTCGCATTGTATGCCCTACTTAACTAGCAGGTTTTTCCAAGCAACAACAACTTA------ATTGTT-TTAGAATTTATATTCGATCTTATTTAAAATT
droRho1 scf7180000780107:332599-332762 + GTTTAA------------AGTA-----------GATT-AA-------------TA-A-CT-AA-AATT--CT-----GTT---ATAAAAAAAATCATATGTTTAAGTAGTGGATACAAATGGCGACTTGCAAACGAAA---TGTTCGCATTGTATGTCCTACTTAAGTAGCTGATTTTTCCAAGCGTCATTAAAGTA------ATTGGTGTTAGT---------------G--TGTTGAAA
droBia1 scf7180000302408:2583548-2583702 + AGAACA------------ATTT-----------CAATAT--------------TT-T-AA-AA-TAT---TT-----AG-A--ATTTAGAAAATCATTTGTTTAAGTAGTGCATACAAAAGGCGATTTGCTATCAA-A---CGTTCGCATTGTATGCCCTACTTAACTAGTTGGTTTTTCTAAGCAACATTAAAATT------ATTGAT------------------------TACTAATT
droTak1 scf7180000414072:20294-20464 + TCTTTTACATTTATTAGTAA---ATTG--GA--AAA---------TTGT--------------TT-----TTG-----AAATTTC--AAAAAATCATACATTTAAGTAGTGGATACAAAAGGCGATTTGCTAATAAAA---TGTTCGCATTGTATGGCCTACTTAACTAACTGATTTTTTTTAACAACATTAAAATA------ACTGCTG-------------------AATACAAAAGAT
droEug1 scf7180000409452:319625-319729 - TATATA------------CAA--A-------------------------------------------------TT--AA-T--TTTACAAAAATCATATACTTAAGTAGTGGATACAAATTGCGATTTTAA--AAT-A---TACTCGCATTGTATGGCCTACTTAGTTAGTTGATTTTT--------------------------------------------------------------
dm3 chr2L:13747613-13747736 - dme-mir-1002 Known_mirbase TAAGTAGTG-------ATAATG----CAAGA--GTA---------TTGT--------------AT-----CGG-----AATTAAT--TAGAAATTATATATTTAAGTAGTGGATACAAAGGGCGATTTGATATAAAA----GTGTCGCATTGTATGACCTACTTAACTAGCTGATT-----------------------------------------------------------------
droSim2 2l:13334161-13334279 - dsi-mir-1002 Known_mirbase TGTCGG------------AATA-----------AATA-TA-------------AT-A-AT-AA-T-----CGG-----AAATATT--TAGAAATTATATATTTAAGTAGTGGATACAAAAGGCGATTTGATATAAAA----GTATCGCATTGTATGGCCTACTTAACTAGCTGATT-----------------------------------------------------------------
droSec2 scaffold_3:14458-14576 - dse_11 confident TGTCGG------------AATA-----------AATA-TA-------------AT-A-AT-AA-T-----CGG-----AAATATT--TAGAAATTATATATTTAAGTAGTGGATACAAAAGGCGATTTGATATAAAA----GTATCGCATTGTATGGCCTACTTAACTAGCTGATT-----------------------------------------------------------------
droYak3 2L:10159931-10160054 - dya_24 confident ATTAGT------------TATTTATTGAAGA--GCA---------TTAT-------GC-----TT-----CGA-----AGT--TTTAAAAAAATTATATATTTAAGTAGTGGATACAAAAGGCGATTG-ATATAAAA----ATGTCGCATTGTATGGCCTACTTAACTAGCTGATT-----------------------------------------------------------------
droEre2 scaffold_4929:11719016-11719120 + der_145 confident ATTAGT------------TCTATA-------------------------------------------------TT--AA-T---TGATCAAAATTATATATCTAAGTAGTGGATACAAACGGCGATTTGGTATAAAA----ATGTCGCATTGTATGACCTGCTTAACTAGCTGATT-----------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
TGTGCG------------ATTA-----------GAGT-TA-------------TC-A-AT-AG-GCAGGTCC-----T-----CTCAAAATAATCGGGCACCTAAGTAGTTGATACAA-GGGCGATAATGTAAAAGAA---CTTTCGCATTGTGTGACCTACTTAAATGCCCGATTGTTTCAAGCAACCTCTAA---AATCTACCTGGAG-------------------TAGCCCCAAATTSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
.....................................................................................................CTAAGTAGTTGATACAA-GGGCGA....................................................................................................................231877.00877391234401220
.....................................................................................................CTAAGTAGTTGATACAA-GGGC......................................................................................................................211138.00138121017000
..................................................................................................................................................GCATTGTGTGACCTACTTAAAT.........................................................................22198.009831463000
.....................................................................................................CTAAGTAGTTGATACAA-GGGCG.....................................................................................................................22163.006349112010
.....................................................................................................CTAAGTAGTTGATACAA-GGGCGG....................................................................................................................23155.00555401000
.............................................................................T-----CTCAAAATAATCGGGCAC............................................................................................................................................19122.00221912000
......................................................................................................TAAGTAGTTGATACAA-GGGCGA....................................................................................................................22118.00184212000
.....................................................................................................CTAAGTAGTTGATACAA-GGGCGC....................................................................................................................23115.00151005000
.......................................................................C-----T-----CTCAAAATAATCGGGCAC............................................................................................................................................2019.009900000
....................................................................................................CCTAAGTAGTTGATACAA-GGGCG.....................................................................................................................2317.007420010
......................................................................................................TAAGTAGTTGATACAA-GGGCGAT...................................................................................................................2316.006402000
..................................................................................................................................................GCATTGTGTGACCTACTTAAA..........................................................................2115.005203000
.............................................................................................................................TAATGTAAAAGAA---CTTTC...............................................................................................1814.004400000
.....................................................................................................CTAAGTAGTTGATACAA-GG........................................................................................................................1914.004103000
.....................................................................................................CTAAGTAGTTGATACAA-GGG.......................................................................................................................2014.004112000
.....................................................................................................CTAAGTAGTTGATACAA-GGGCGAC...................................................................................................................2414.004400000
................................................................................................................................................TCGCATTGTGTGACCTACTTAAA..........................................................................2313.003003000
.....................................................................................................CTAAGTAGTTGATACAA-GGGCGT....................................................................................................................2313.003102000
...................................................................................................................................................CATTGTGTGACCTACTTAAATG........................................................................2213.003300000
....................................................................................................CCTAAGTAGTTGATACAA-GGGC......................................................................................................................2212.002200000
...................................................................................CTCAAAATAATCGGGCAC............................................................................................................................................1812.002200000
...............................................................................................................................................TTCGCATTGTGTGACCTACTTAAA..........................................................................2412.002002000
.....................................................................................................CTAAGTAGTTGATACAA-GGGG......................................................................................................................2112.002200000
...............................................................................................................................................TTCGCATTGTGTGACCTACTTA............................................................................2212.002002000
..........................................................................................................TAGTTGATACAA-GGGCGA....................................................................................................................1812.002101000
.....................................................................................................CTAAGTAGTTGATACAA-GGGCGAA...................................................................................................................2411.001001000
...............................................................................................................................................TTCGCATTGTGTGACCTACTTAA...........................................................................2311.001001000
.....................................................................................................CTAAGTAGTTGATACAA-GGGCGCC...................................................................................................................2411.001100000
........................................................................................................AGTAGTTGATACAA-GGGCG.....................................................................................................................1911.001001000
.....................................................................................................CTAAGTAGTTGATACAA-GGGCA.....................................................................................................................2211.001001000
........................................................................................................AGTAGTTGATACAA-GGGCGA....................................................................................................................2011.001100000
........................................................................................................AGTAGTTGATACAA-GGGCGATAATG...............................................................................................................2511.001001000
...................................................................................................................................................CATTGTGTGACCTACTTAAAT.........................................................................2111.001001000
....................................................................................................................................................ATTGTGTGACCTACTTAAAT.........................................................................2011.001001000
......................................................................CC-----T-----CTCAAAATAATCGGGCAC............................................................................................................................................2111.001100000
dp5
TGTGCG------------ATTA-----------GAGT-TA-------------TC-A-AT-AG-GCAGGTCC-----T-----CTCAAAATAATCGGGCACCTAAGTAGTTGATACAA-GGGCGATAATGTAAAAGAA---CTTTCGCATTGTGTGACCTACTTAAATGCTCGATTGTTTCAAGCAACCTCTAA---AATCTACCTGGAG-------------------TAGCCCCAAAGTSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
.....................................................................................................CTAAGTAGTTGATACAA-GGGCGA....................................................................................................................2315183.005183068728120168400000
..................................................................................................................................................GCATTGTGTGACCTACTTAAAT.........................................................................221711.00711051470018910000
......................................................................................................TAAGTAGTTGATACAA-GGGCGA....................................................................................................................221528.00528090215022300000
......................................................................................................TAAGTAGTTGATACAA-GGGCGAT...................................................................................................................231472.00472025293015400000
.....................................................................................................CTAAGTAGTTGATACAA-GGGC......................................................................................................................211198.001980886010400000
....................................................................................................CCTAAGTAGTTGATACAA-GGGCG.....................................................................................................................231167.0016703611601500000
.....................................................................................................CTAAGTAGTTGATACAA-GGGCG.....................................................................................................................221130.001300355504000000
......................................................................................................TAAGTAGTTGATACAA-GGGCGAC...................................................................................................................23178.007800770100000
.....................................................................................................CTAAGTAGTTGATACAA-GGG.......................................................................................................................20166.0066022803600000
..................................................................................................................................................GCATTGTGTGACCTACTTAAA..........................................................................21160.0060063601800000
......................................................................................................TAAGTAGTTGATACAA-GGGC......................................................................................................................20150.0050001903100000
.................................................................................................................................................CGCATTGTGTGACCTACTTAAA..........................................................................22146.004602703700000
..................................................................................................................................................GCATTGTGTGACCTACTTAAAC.........................................................................22146.004600460000000
.....................................................................................................CTAAGTAGTTGATACAA-GGGCGAT...................................................................................................................24128.002806170500000
.....................................................................................................CTAAGTAGTTGATACAA-GGGCGC....................................................................................................................23126.002600701900000
......................................................................................................TAAGTAGTTGATACAA-GGGCG.....................................................................................................................21126.002605801300000
................................................................................................................................................TCGCATTGTGTGACCTACTTAAA..........................................................................23118.001800601200000
.....................................................................................................CTAAGTAGTTGATACAA-GGGCGT....................................................................................................................23118.001801601100000
.....................................................................................................CTAAGTAGTTGATACAA-GGGCGG....................................................................................................................23117.00170080900000
......................................................................................................TAAGTAGTTGATACAA-GGGCGATT..................................................................................................................24114.001402110100000
....................................................................................................CCTAAGTAGTTGATACAA-GGGC......................................................................................................................22113.001301110100000
.....................................................................................................CTAAGTAGTTGATACAA-GG........................................................................................................................19112.00120030900000
...............................................................................................................................................TTCGCATTGTGTGACCTACTTA............................................................................22111.001101001000000
.......................................................................................................AAGTAGTTGATACAA-GGGCGA....................................................................................................................21111.00110820100000
.....................................................................................................CTAAGTAGTTGATACAA-GGGCGAC...................................................................................................................24110.00100080200000
....................................................................................................CCTAAGTAGTTGATACAA-GGG.......................................................................................................................2118.0080080000000
...............................................................................................................................................TTCGCATTGTGTGACCTACTTAAA..........................................................................2418.0080010700000
.....................................................................................................CTAAGTAGTTGATACAA-GGGCGAA...................................................................................................................2417.0070230200000
................................................................................................................................................TCGCATTGTGTGACCTACTTAA...........................................................................2217.0070010600000
.....................................................................................................CTAAGTAGTTGATACAA-GGGCGATA..................................................................................................................2517.0070060100000
....................................................................................................CCTAAGTAGTTGATACAA-GGGCGA....................................................................................................................2417.0070230200000
...................................................................................................................................................CATTGTGTGACCTACTTAAAT.........................................................................2117.0070330100000
...................................................................................................................................................CATTGTGTGACCTACTTAAATG........................................................................2216.0060020400000
......................................................................................................TAAGTAGTTGATACAA-GGG.......................................................................................................................1916.0060000600000
......................................................................................................TAAGTAGTTGATACAA-GGGCGATC..................................................................................................................2415.0050050000000
..................................................................................................................................................GCATTGTGTGACCTACTTAA...........................................................................2015.0050110300000
.................................................................................................................................................CGCATTGTGTGACCTACTTAA...........................................................................2115.0050000500000
......................................................................................................TAAGTAGTTGATACAA-GGGCGATA..................................................................................................................2414.0040020200000
........................................................................................................AGTAGTTGATACAA-GGGCGA....................................................................................................................2014.0040200200000
......................................................................................................TAAGTAGTTGATACAA-GGGCGG....................................................................................................................2213.0030010200000
.......................................................................C-----T-----CTCAAAATAATCGGGCAC............................................................................................................................................2013.0030030000000
....................................................................................................................................................ATTGTGTGACCTACTTAAAT.........................................................................2013.0030010200000
...............................................................................................................................................TTCGCATTGTGTGACCTACTTAA...........................................................................2313.0030100200000
.............................................................................T-----CTCAAAATAATCGGGCAC............................................................................................................................................1913.0030030000000
......................................................................................................TAAGTAGTTGATACAA-GGGCGC....................................................................................................................2213.0030030000000
.......................................................................................................AAGTAGTTGATACAA-GGGCGAT...................................................................................................................2213.0030210000000
........................................................................................................AGTAGTTGATACAA-GGGCGATAATG...............................................................................................................2513.0030010200000
......................................................................................................TAAGTAGTTGATACAA-GGGCGATTT.................................................................................................................2512.0020010100000
.....................................................................................................CTAAGTAGTTGATACAA-GGGCGAG...................................................................................................................2412.0020200000000
.....................................................................................................CTAAGTAGTTGATACAA-GGGCGATC..................................................................................................................2512.0020020000000
......................................................................................................TAAGTAGTTGATACAA-GGGCGT....................................................................................................................2211.0010000100000
......................................................................................................TAAGTAGTTGATACAA-GGGCCT....................................................................................................................2211.0010000100000
..................................................................................................................................................GCATTGTGTGACCTACTTAAATA........................................................................2311.0010010000000
.....................................................................................................CTAAGTAGTTGATACAA-GGGG......................................................................................................................2111.0010010000000
.........................................................................................................GTAGTTGATACAA-GGGCGA....................................................................................................................1911.0010000100000
.....................................................................TCC-----T-----CTCAAAATAATCGGGCA.............................................................................................................................................2111.0010100000000
..................................................................................................................................................GCATTGTGTGACCTACTTAAATG........................................................................2311.0010000100000
droWil2
AGTATT------------GAAA----------AAGTG-T--------------TC-A-TTTGA-T-----CT-----GG-TCATT--GAAAAATGTTACACTTAAGTAGTTAATACAA-TGGCGATTCGTA-TTCCATTGTACATCGCATTGTGTGAGTTACTTTGTTGAGAGATTTTTCCAAACAAC-----------------------------------------------------SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
.....................................................................................................TTAAGTAGTTAATACAA-TGGCGA....................................................................................................................23125007.0025007014902483820
.....................................................................................................TTAAGTAGTTAATACAA-TGGCG.....................................................................................................................2211805.00180506017981
.....................................................................................................TTAAGTAGTTAATACAA-TGGCGAT...................................................................................................................241762.007620707541
......................................................................................................TAAGTAGTTAATACAA-TGGCGAT...................................................................................................................231592.005920605860
..................................................................................................................................................GCATTGTGTGAGTTACTTTGTT.........................................................................22196.0096000960
......................................................................................................TAAGTAGTTAATACAA-TGGCGA....................................................................................................................22191.00910120790
....................................................................................................CTTAAGTAGTTAATACAA-TGGCG.....................................................................................................................23164.0064000640
....................................................................................................CTTAAGTAGTTAATACAA-TGGCGA....................................................................................................................24135.0035000350
.....................................................................................................TTAAGTAGTTAATACAA-TGGCGAA...................................................................................................................24128.0028000280
.....................................................................................................TTAAGTAGTTAATACAA-TGG.......................................................................................................................20119.0019010180
.....................................................................................................TTAAGTAGTTAATACAA-TGGCGG....................................................................................................................23115.0015000150
.....................................................................................................TTAAGTAGTTAATACAA-TGGCGATT..................................................................................................................25112.0012000120
.....................................................................................................TTAAGTAGTTAATACAA-TGGCA.....................................................................................................................22112.0012000120
......................................................................................................TAAGTAGTTAATACAA-TGGCGATT..................................................................................................................24110.0010000100
......................................................................................................TAAGTAGTTAATACAA-TGGCG.....................................................................................................................21110.0010000100
.....................................................................................................TTAAGTAGTTAATACAA-TGGC......................................................................................................................2119.00900090
.......................................................................................................AAGTAGTTAATACAA-TGGCGA....................................................................................................................2119.00901080
.....................................................................................................TTAAGTAGTTAATACAA-TGGCGC....................................................................................................................2319.00900090
.................................................................................................................................................CGCATTGTGTGAGTTACTTTGTT.........................................................................2318.00800080
........................................................................................................AGTAGTTAATACAA-TGGCGA....................................................................................................................2016.00600060
.....................................................................................................TTAAGTAGTTAATACAA-TGGCGAC...................................................................................................................2415.00500050
.......................................................................................................AAGTAGTTAATACAA-TGGCGAT...................................................................................................................2215.00503020
.....................................................................................................TTAAGTAGTTAATACAA-TGGCT.....................................................................................................................2214.00400040
.............................................................................................................................TTCGTA-TTCCATTGTACATC...............................................................................................2014.00400040
..................................................................................................................................................GCATTGTGTGAGTTACTTTG...........................................................................2013.00300030
.................................................................................................................................................CGCATTGTGTGAGTTACTTTG...........................................................................2113.00300030
.....................................................................................................TTAAGTAGTTAATACAA-TGGCGT....................................................................................................................2313.00300030
......................................................................................................TAAGTAGTTAATACAA-TGGC......................................................................................................................2013.00300030
......................................................................................................TAAGTAGTTAATACAA-TGGCGATA..................................................................................................................2412.00200020
................................................................................................................................................TCGCATTGTGTGAGTTACTTTG...........................................................................2212.00200020
...................................................................................................................................................CATTGTGTGAGTTACTTTGTTG........................................................................2212.00200020
.....................................................................................................TTAAGTAGTTAATACAA-TGCGA.....................................................................................................................2231.67500050
..........................................................................................................TAGTTAATACAA-TGGCGA....................................................................................................................1811.00100010
.....................................................................................................TTAAGTAGTTAATACAA-T.........................................................................................................................1811.00101000
..................................................................................................................................................GCATTGTGTGAGTTACTTTGTTA........................................................................2311.00100010
.................................................................................................................................................CGCATTGTGTGAGTTACTTTGT..........................................................................2211.00100010
.....................................................................................................TTAAGTAGTTAATACAA-TGGCGATA..................................................................................................................2511.00100010
.....................................................................................................TTAAGTAGTTAATACAA-TGGCC.....................................................................................................................2211.00100010
......................................................................................................TAAGTAGTTAATACAA-TGG.......................................................................................................................1911.00100010
........................................................................................................AGTAGTTAATACAA-TGGCGAT...................................................................................................................2111.00100010
.....................................................................................................TTAAGTAGTTAATACAA-TGA.......................................................................................................................2011.00100010
..........................................................................................................TAGTTAATACAA-TGGCGATT..................................................................................................................2011.00100010
....................................................................................................CTTAAGTAGTTAATACAA-TGGCGAT...................................................................................................................2511.00100010
.....................................................................................................TTAAGTAGTTAATACAA-TGCG......................................................................................................................2111.00100010
.....................................................................................................TTAAGTAGTTAATACAA-TGGCGATC..................................................................................................................2511.00100010
droVir3
TAAAAA------------ATTT-----------AAAT-CA-------------TT-G-CT-AA-GGC---TT-----GC-T--GCAATGAAAATTGAACGCTTAAGTAGTTAATACAA-GGGCGAGTTTTTT--CTT----GCATCGCATTGTGTGACCTACTTAAATGACAAATTTT--CAAG---------------------------------------------------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.....................................................................................................TTAAGTAGTTAATACAA-GGGCGA....................................................................................................................2318526.0085261113826010100000000000000001000102625927390010102185611061711623362491921861750004692049270021312510010112975674551
.....................................................................................................TTAAGTAGTTAATACAA-GGGCG.....................................................................................................................221517.005170011200000000000001000001000001000000000000001079143430513719242300045890000000100000013500
......................................................................................................TAAGTAGTTAATACAA-GGGCGA....................................................................................................................221474.004740001650000000000000000000000110000002180000010173371217171910700048107010001220000002101351
..................................................................................................................................................GCATTGTGTGACCTACTTAAAT.........................................................................221406.004060001000000000000000000000000000000000010000000213141231181811101712000213100000112700000033141513
.....................................................................................................TTAAGTAGTTAATACAA-GGGC......................................................................................................................21187.0087000380000000000000000000000000000000000000000000133584410001060000020000000000002
.....................................................................................................TTAAGTAGTTAATACAA-GGG.......................................................................................................................20176.0076000160000000000000000000000000000000000000000021262929870001020000000000000000000
.....................................................................................................TTAAGTAGTTAATACAA-GGGCGAT...................................................................................................................24167.006700028000000000000000000000000000000000000000000201075135000560000010000000002100
.....................................................................................................TTAAGTAGTTAATACAA-GGGCGAA...................................................................................................................24153.0053000250000000000000000000000000001000000000000000011221300003110000000100000010001
......................................................................................................TAAGTAGTTAATACAA-GGGCG.....................................................................................................................21132.00320015000000000000000000000000000000000000000000131122513000050000000000000000110
..................................................................................................................................................GCATTGTGTGACCTACTTAAA..........................................................................21129.00290005000000000000000000000000000000011000000001013050120000340000000100000010000
.....................................................................................................TTAAGTAGTTAATACAA-GGGCGC....................................................................................................................23127.002700040000000000000000000000000000000000000000000000101110001180000000000000000000
.....................................................................................................TTAAGTAGTTAATACAA-GGGCGT....................................................................................................................23126.002600012000000000000000000000000000000000000000000001041000000260000000000000000000
.....................................................................................................TTAAGTAGTTAATACAA-GGGCGG....................................................................................................................23126.00260007000000000000000000000000000000000000000000000031121000470000000000000000000
.....................................................................................................TTAAGTAGTTAATACAA-GGGCGAC...................................................................................................................24125.00250006000000000000000000000000000000000000000001001140220000710000000000000000000
..................................................................................................................................................GCATTGTGTGACCTACTTAAATT........................................................................23123.00230005000000000000000000000000000000000000000002014020001000030000001100000002100
....................................................................................................CTTAAGTAGTTAATACAA-GGGCGA....................................................................................................................24113.00130008000000000000000000000000000000000000000000000000000000050000000000000000000
.....................................................................................................TTAAGTAGTTAATACAA-GGGCGATC..................................................................................................................25112.00120000000000000000000000000000000000000000000000012141011000100000000000000000000
.......................................................................................................AAGTAGTTAATACAA-GGGCGA....................................................................................................................2116.0060004000000000000000000000000000000000000000000000000000000010000000000000000001
.....................................................................................................TTAAGTAGTTAATACAA-GGGCGAAA..................................................................................................................2516.0060004000000000000000000000000000000000000000000000000000000110000000000000000000
.....................................................................................................TTAAGTAGTTAATACAA-GG........................................................................................................................1915.0050001000000000000000000000000000000000000000000001002000000100000000000000000000
......................................................................................................TAAGTAGTTAATACAA-GGGCGAT...................................................................................................................2315.0050002000000000000000000000000000000000000000000000000100000000000000000000001100
......................................................................................................TAAGTAGTTAATACAA-GGG.......................................................................................................................1914.0040001000000000000000000000000000000000000000000000110010000000000000000000000000
......................................................................................................TAAGTAGTTAATACAA-GGGCGC....................................................................................................................2214.0040002000000000000000000000000000000000000000000000000000000020000000000000000000
......................................................................................................TAAGTAGTTAATACAA-GGGCGT....................................................................................................................2213.0030000000000000000000000000000000000000000000000010001100000000000000000000000000
.....................................................................................................TTAAGTAGTTAATACAA-GGGCT.....................................................................................................................2213.0030000000000000000000000000000000000000000000000100000001000100000000000000000000
...................................................................................................................................................CATTGTGTGACCTACTTAAAT.........................................................................2113.0030001000000000000000000000000000000000000000000000001000000010000000000000000000
..................................................................................................................................................GCATTGTGTGACCTACTT.............................................................................1812.0020002000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................GCATTGTGTGACCTACTTAAAC.........................................................................2212.0020002000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................GTTTTTT--CTT----GCATCGCATTGTGTGACCTACTTAAAT.........................................................................3712.0020000000000000000000000000000000000000000000000000000011000000000000000000000000
.....................................................................................................TTAAGTAGTTAATACAA-GGGCGTT...................................................................................................................2412.0020001000000000000000000000000000000000000000000000000000000010000000000000000000
..................................................................................................................................................GCATTGTGTGACCTACTTAA...........................................................................2012.0020000000000000000000000000000000000000000000000000010000000010000000000000000000
......................................................................................................TAAGTAGTTAATACAA-GGGCGAG...................................................................................................................2312.0020002000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................TTAAGTAGTTAATACAA-GGGCA.....................................................................................................................2212.0020001000000000000000000000000000000000000000000000000001000000000000000000000000
.....................................................................................................TTAAGTAGTTAATACAA-GGGCGATA..................................................................................................................2512.0020000000000000000000000000000000000000000000000000001010000000000000000000000000
......................................................................................................TAAGTAGTTAATACAA-GGGC......................................................................................................................2012.0020001000000000000000000000000000000000000000000000000100000000000000000000000000
.....................................................................................................TTAAGTAGTTAATACAA-GGGCC.....................................................................................................................2212.0020002000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................GCATTGTGTGACCTACTTAAATA........................................................................2312.0020000000000000000000000000000000000000000000001000010000000000000000000000000000
.....................................................................................................TTAAGTAGTTAATACAA-GGGCGAAAC.................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000010000000000000000100
......................................................................................................TAAGTAGTTAATACAA-GGGCGAGT..................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000100
......................................................................................................TAAGTAGTTAATACAA-GGGCGAC...................................................................................................................2311.0010000000000000000000000000000000000000000000000010000000000000000000000000000000
.............................................................................................................................................GCATCGCATTGTGTGACCTACTTAA...........................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000010
.............................................................................................................................GTTTTTT--CTT----GCATC...............................................................................................1511.0010000000000000000000000000000000000000000000000000001000000000000000000000000000
........................................................................................................AGTAGTTAATACAA-GGGCGA....................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
.................................................................................................................................................CGCATTGTGTGACCTACTTAA...........................................................................2111.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................TTAAGTAGTTAATACAA-GGGCGAAC..................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000100000000000
..................................................................................................................................................GCATTGTGTGACCTACTTAAATTT.......................................................................2411.0010000000000000000000000000000000000000000000000000000001000000000000000000000000
................................................................................................................................................TCGCATTGTGTGACCTACTTAA...........................................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
.................................................................................................................................................CGCATTGTGTGACCTACTTA............................................................................2011.0010000000000000000000000000000000000000000000000100000000000000000000000000000000
.......................................................................................................AAGTAGTTAATACAA-GGGCGAGT..................................................................................................................2311.0010000000000000000000000000000000000000000000001000000000000000000000000000000000
.....................................................................................................TTAAGTAGTTAATACAA-GGA.......................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
.....................................................................................................TTAAGTAGTTAATACAA-GGGCGTC...................................................................................................................2411.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................TAAGTAGTTAATACAA-GGGCGTT...................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000100000000000000000000
..............................................................................................................................TTTTTT--CTT----GCATCGCATTGTGTGACCT.................................................................................2811.0010000000000000000000000000000000000000000000000000010000000000000000000000000000
droAna3
TAAGTTTCA---------A--------------GCAT-TTCAAGCCAAAGTTTTC-A-TA--A---ATATCT-----GT----GCAAACTAAATCATGTGTTTAAGTAGGCAATACAT-GGGCGACTAAATAAAAT-A---TACTCGCAATGTATAGCCTACATAACTAGTTGATTTTTGCAAGCATCCATTAC---AAATTA--------------------------------------SizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.....................................................................................................TTAAGTAGGCAATACAT-GGGCGA....................................................................................................................2316998.0069985595510025724
.....................................................................................................TTAAGTAGGCAATACAT-GGG.......................................................................................................................201371.003710191177003
.....................................................................................................TTAAGTAGGCAATACAT-GGGC......................................................................................................................211299.00299022967021
.....................................................................................................TTAAGTAGGCAATACAT-GGGCG.....................................................................................................................221257.00257119557022
......................................................................................................TAAGTAGGCAATACAT-GGGCGA....................................................................................................................22178.007806216000
.....................................................................................................TTAAGTAGGCAATACAT-GG........................................................................................................................19148.004803018000
.....................................................................................................TTAAGTAGGCAATACAT-GGGCGAC...................................................................................................................24144.00440440000
....................................................................................................TTTAAGTAGGCAATACAT-GGGCGA....................................................................................................................24142.00420384000
..................................................................................................................................................GCAATGTATAGCCTACATAACT.........................................................................22139.00390345000
.....................................................................................................TTAAGTAGGCAATACAT-GGGCGG....................................................................................................................23121.00210129000
.....................................................................................................TTAAGTAGGCAATACAT-GGGCGAA...................................................................................................................24115.00150132000
.....................................................................................................TTAAGTAGGCAATACAT-GGGCGAT...................................................................................................................24114.00140140000
.......................................................................................................AAGTAGGCAATACAT-GGGCGA....................................................................................................................21113.00130103000
..................................................................................................................................................GCAATGTATAGCCTACATAACC.........................................................................22111.00110110000
.....................................................................................................TTAAGTAGGCAATACAT-GGGCGC....................................................................................................................23110.0010019000
......................................................................................................TAAGTAGGCAATACAT-GGGCGAC...................................................................................................................23110.00100100000
.....................................................................................................TTAAGTAGGCAATACAT-GGGCGT....................................................................................................................2316.006032010
.....................................................................................................TTAAGTAGGCAATACAT-GGGCGACT..................................................................................................................2516.006060000
.....................................................................................................TTAAGTAGGCAATACAT-G.........................................................................................................................1816.006033000
......................................................................................................TAAGTAGGCAATACAT-GGGCG.....................................................................................................................2114.004022000
..................................................................................................................................................GCAATGTATAGCCTACATAAC..........................................................................2114.004040000
....................................................................................................TTTAAGTAGGCAATACAT-GGG.......................................................................................................................2114.004022000
.....................................................................................................TTAAGTAGGCAATACAT-GGGCC.....................................................................................................................2214.004040000
......................................................................................................TAAGTAGGCAATACAT-GGGC......................................................................................................................2014.004040000
........................................................................................................AGTAGGCAATACAT-GGGCGACTA.................................................................................................................2313.003030000
.......................................................................................................AAGTAGGCAATACAT-GGG.......................................................................................................................1813.003012000
.....................................................................................................TTAAGTAGGCAATACAT-GGT.......................................................................................................................2013.003012000
.......................................................................................................AAGTAGGCAATACAT-GGGC......................................................................................................................1913.003030000
.......................................................................................................AAGTAGGCAATACAT-GGGCGACT..................................................................................................................2313.003021000
...............................................................................................................................................CTCGCAATGTATAGCCTACATA............................................................................2213.003021000
.....................................................................................................TTAAGTAGGCAATACAT-GGGCGAAA..................................................................................................................2512.002020000
....................................................................................................TTTAAGTAGGCAATACAT-GGGCG.....................................................................................................................2312.002011000
......................................................................................................TAAGTAGGCAATACAT-GGG.......................................................................................................................1912.002002000
..........................................................................................................TAGGCAATACAT-GGGCGA....................................................................................................................1812.002011000
.....................................................................................................TTAAGTAGGCAATACAT-GGGCGATA..................................................................................................................2512.002020000
..................................................................................................................................................GCAATGTATAGCCTACATAACTT........................................................................2311.001010000
....................................................................................................TTTAAGTAGGCAATACAT-..........................................................................................................................1811.001001000
.....................................................................................................TTAAGTAGGCAATACAT-GGGCGAG...................................................................................................................2411.001010000
........................................................................................................AGTAGGCAATACAT-GGGCGA....................................................................................................................2011.001010000
.....................................................................................................TTAAGTAGGCAATACAT-GGGCCC....................................................................................................................2311.001001000
........................................................................................................AGTAGGCAATACAT-GGGCGACC..................................................................................................................2211.001010000
....................................................................................................TTTAAGTAGGCAATACAT-GG........................................................................................................................2011.001001000
......................................................................................................TAAGTAGGCAATACAT-GGGCGAA...................................................................................................................2311.001010000
....................................................................................................TTTAAGTAGGCAATACAT-GGGC......................................................................................................................2211.001010000
......................................................................................................TAAGTAGGCAATACAT-GGGCGAT...................................................................................................................2311.001010000
.....................................................................................................TTAAGTAGGCAATACAT-GGGT......................................................................................................................2111.001000010
......................................................................................................TAAGTAGGCAATACAT-GGGCGACC..................................................................................................................2411.001010000
....................................................................................................TTTAAGTAGGCAATACAT-GGGCGAA...................................................................................................................2511.001010000
droBip1
CTTCCA------------AACA-----------ATAT-TA-------------TC--T-----TC-----TTAATATA------CAACTTAAATCATGTGTTTAAGTAGGCAATACAT-GGGCGATTCATTA---------CATTCGCAATGTATGGCTTACATAACTAGTTGATTTTTGAAGTCATCCATTCC------------------AAAG-------------------TTAATTSizeHit CountTotal NormTotal
No Reads
droKik1
TTCCTG------------ACCT-----------AAAA-TA-------------AG-G-AC-AT-ACATATCT-----GTTA--ATTAAGAAAATCGTATGTTTAAGTAGTGGATACAA-CGGCGATTGAACACAATAA---TCTTCGCAGTGTGTTACCTACTTAATTAGTCGATTTTTACAAGCGTCGTC--------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
TATACA------------AGAA----------AAGTG-T--------------TTTAT-----TT-----TTA-----ACATATT--AAAAAATCATACGTTTAAGTAGTGGATACAAAAGGCGATTTAT-ATAAAAA---AGTTCGCATTGTATGTCCTACTTAAGTGGCTGATTTTTTCAAGCAACATCAAA---AA----ATTGTT-TTAAAG--------------------TAAATSizeHit CountTotal NormTotal
No Reads
droEle1
GTGTTT----------AAAATA----CAATAAAAGA---------TTAT--------------GT-----TT-------TG--TTTAAAAAAATCATGTATTTAAGTAGTGGATACAAAAGGCGATTTACAAAATAAA---TGTTCGCATTGTATGCCCTACTTAACTAGCAGGTTTTTCCAAGCAACAACAACTTA------ATTGTT-TTAGAATTTATATTCGATCTTATTTAAAATTSizeHit CountTotal NormTotal
No Reads
droRho1
GTTTAA------------AGTA-----------GATT-AA-------------TA-A-CT-AA-AATT--CT-----GTT---ATAAAAAAAATCATATGTTTAAGTAGTGGATACAAATGGCGACTTGCAAACGAAA---TGTTCGCATTGTATGTCCTACTTAAGTAGCTGATTTTTCCAAGCGTCATTAAAGTA------ATTGGTGTTAGT---------------G--TGTTGAAASizeHit CountTotal NormTotal
No Reads
droBia1
AGAACA------------ATTT-----------CAATAT--------------TT-T-AA-AA-TAT---TT-----AG-A--ATTTAGAAAATCATTTGTTTAAGTAGTGCATACAAAAGGCGATTTGCTATCAA-A---CGTTCGCATTGTATGCCCTACTTAACTAGTTGGTTTTTCTAAGCAACATTAAAATT------ATTGAT------------------------TACTAATTSizeHit CountTotal NormTotal
No Reads
droTak1
TCTTTTACATTTATTAGTAA---ATTG--GA--AAA---------TTGT--------------TT-----TTG-----AAATTTC--AAAAAATCATACATTTAAGTAGTGGATACAAAAGGCGATTTGCTAATAAAA---TGTTCGCATTGTATGGCCTACTTAACTAACTGATTTTTTTTAACAACATTAAAATA------ACTGCTG-------------------AATACAAAAGATSizeHit CountTotal NormTotal
No Reads
droEug1
TATATA------------CAA--A-------------------------------------------------TT--AA-T--TTTACAAAAATCATATACTTAAGTAGTGGATACAAATTGCGATTTTAA--AAT-A---TACTCGCATTGTATGGCCTACTTAGTTAGTTGATTTTT--------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
TAAGTAGTG-------ATAATG----CAAGA--GTA---------TTGT--------------AT-----CGG-----AATTAAT--TAGAAATTATATATTTAAGTAGTGGATACAAAGGGCGATTTGATATAAAA----GTGTCGCATTGTATGACCTACTTAACTAGCTGATT-----------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.....................................................................................................TTAAGTAGTGGATACAAAGGGCGA....................................................................................................................24112964.00129640000100135210100000000000000000000000100010000010000000000100000000000000000000000020182422000001000030000012000030010522101600000000200000000000000030030706000000000000000000001100004000000000000030000000000700000110000000000003030003205720039000058228510000000020000002000000000141061100000000000000120635935053130000000000010000202095410111047892312000000
.....................................................................................................TTAAGTAGTGGATACAAAGGG.......................................................................................................................2112968.00296800000000000000000000000000000000003840000100000000000000000000000000000000000000000000100000000000000000000000000010000000000000000000000000040011030000200000001000000000000000000000000000000010000000000000000000000001130000010132040000221500000000020000000000000000071076000000000000030001892238004000000000000000010003210000002660001000
.....................................................................................................TTAAGTAGTGGATACAAAGGGCG.....................................................................................................................2311844.00184400000000500000000000000000000000000000000000000000000000000000000000000000000000010622300000000010000000000000000310001000000000000000000000070023000000000000000000000000000000000000000000000000001000000000000000000001000100020118011700006541000000000000000000000400000100250000000000000220070174000300000000000000003000512100010911310000000
..................................................................................................................................................GCATTGTATGACCTACTTAACT.........................................................................2211834.001834000000052710000000000000000000000000000000000000000000000000000000000000000000000007340649676700120300100350010000100001443702100000000200000000000000012532000000000000000000000010000000000000000000000000000000000000000000000000000000150720130000590000000000000000000000000001000000000000000000000531400000000000000000000000100000000010000000
.....................................................................................................TTAAGTAGTGGATACAAAGGGC......................................................................................................................2211769.001769000000001000000000000000000000000000000000000000000000000000000000000000000000000001110000000000000000000000000000000000000000000000000000001000300200000000000000000000100000000000000000000000000000000000000000000000000010000000412120000380000000000000000000000000001001000000000000001101496952005000000000000002000008220120842314830003000
.....................................................................................................TTAAGTAGTGGATACAAAGG........................................................................................................................2011041.00104100000000000000000000000000000000004430000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000010060000000000000000000000000000000000000000000000000020000000000000000000000100000000310700007400000000000000000000000000020022000000000000000004550500000000100001000100000400000000000000000
......................................................................................................TAAGTAGTGGATACAAAGGGCGAT...................................................................................................................241963.009630000000041000000000000000000000000000000000000000000000000000000000000000000000004068150000000000000000000000000050000000000000000000000000000004600000000000000000000000000001000000000000000000000000000000000000000000000000000013001000060330000000000000000000000000000000000000000000000000506196010000000000000000000005000000012100000000
......................................................................................................TAAGTAGTGGATACAAAGGGC......................................................................................................................211472.004720000000000000000000000000000000000000000000000000000007000000000000000000000000001001000000000000000000000000000000000000000000000000000000200180000000000000000000000000000000000000000000000000000100000000000000100000000000000100700000000000000000000000000000000010011000000000000000002161490000000000000000000000029301220047170000000
......................................................................................................TAAGTAGTGGATACAAAGGGCG.....................................................................................................................221329.0032900000000100000000000000000000000000000000000000000000000000000000000000000000000000233000000000000000000000000003000000000000000000000000000300600000000000000000000000000000000000000000000000000000000000000000000000000000001014003000091400000000010000000000000000000001000000000000000001895500000000100000000000000100001102240000000
......................................................................................................TAAGTAGTGGATACAAAGGGCGA....................................................................................................................231266.00266000000001000000000000000000000000000000000000000000000000000000000000000000000000001480000000000000000000001000001000000000000000000000000001000000000000000000000000002000000000000000000000000000000000000000000000000000000000130000000221400000000000000000000000000000000000000000000000001256000000000000000000000000210000003250000000
.....................................................................................................TTAAGTAGTGGATACAAAGGGCGG....................................................................................................................241246.00246000000000000000000000000000000000000000000000000000000000000000000000000000000000001867000000000000000000000000003460200000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006129001000000000000000000000000000000000000000000000022300000000000000000000000000000000010000000
.....................................................................................................TTAAGTAGTGGATACAAAG.........................................................................................................................191179.00179000000000000000000000000000000000012000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000210000000000000000000000000000000000000000000000000116000000000000000100000000000000000000000000
.................................................................................................................................................CGCATTGTATGACCTACTTAAC..........................................................................221175.0017500000000310000000000000000000000000000000000000000000000000000000000000000000000080216800000000000000000000000000178000000000000000000000000001220500000000000000000000000000000000000000000000000000000000000000000000000000000050001010000370000000001000000000000000000000000000000000000000111000000000000000000000000000000000000000000
......................................................................................................TAAGTAGTGGATACAAAGGG.......................................................................................................................201150.00150000000000000000000000000000000000065000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000220000000000000000000000000000000200000000000000000145800100000000000000000000300000001000000000
.....................................................................................................TTAAGTAGTGGATACAAAGGGCGC....................................................................................................................241136.0013600000000000000000000000000000000000000000000000000000000000000000000000000000000020612000000000100000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000022130000000000000000000000000000000100000000000000000413400000000000000000000000000000000000000000
.................................................................................................................................................CGCATTGTATGACCTACTTAACT.........................................................................231108.00108000000010200000000000000000000000000000000000000000000000000000000000000000000000150621900001000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000002200000000000000000000000000000000000000000
.....................................................................................................TTAAGTAGTGGATACAAAGGGCGAT...................................................................................................................251100.0010000000000010000000000000000000000000000000000000000000000000000000000000000000000000620000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020010000720000000000000000000000000001000200000000000000000402400000000000000000000000800000000040000000
.....................................................................................................TTAAGTAGTGGATACAAA..........................................................................................................................18192.00920000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000016000000000000000000000000000000000000000000000000008300000000000000000000000000000000000000000
...................................................................................................................................................CATTGTATGACCTACTTAACT.........................................................................21187.008700000001500000000000000000000000000000000000000000000000000000000000000000000000040193100000000010000000000000000760000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000002000000000000000001000000000000000000000000000000001800000000000000000000000000000000000000000
.....................................................................................................TTAAGTAGTGGATACAAAGGGG......................................................................................................................22153.005300000000000000000000000000000000001000000000000000000000000000000000000000000000000150000000000000000000000000020000000000000000000000000000002000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000101900000000030000001000000000000002000000000000000000200000000000000000000000300000000010000000
.....................................................................................................TTAAGTAGTGGATACAAAGGGCGT....................................................................................................................24137.00370000000000000000000000000000000000000000000000000000000000000000000000000000000001011200000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000100000002100000000000000000000000000000010000000000000000008600000000000000000000000000000000010000000
.......................................................................................................AAGTAGTGGATACAAAGGG.......................................................................................................................19136.00360000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013500000000000000000000000000000000000000000
......................................................................................................TAAGTAGTGGATACAAAGG........................................................................................................................19130.00300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000062100000000000000000000000100000000000000000
......................................................................................................TAAGTAGTGGATACAAAG.........................................................................................................................18124.00240000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000001800000000000000000000000000000000000000000
.................................................................................................................................................CGCATTGTATGACCTACTTAA...........................................................................21122.00220000000000000000000000000000000000000000000000000000000000000000000000000000000001012000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004100000000000000000000000000000000000000000000000001200000000000000000000000000000000000000000
......................................................................................................TAAGTAGTGGATACAAAGGGG......................................................................................................................21122.0022000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001300000000040000000000000000040006000000000000000000100000000000000000000000000000000000000000
.......................................................................................................AAGTAGTGGATACAAAGGGCGA....................................................................................................................22115.0015000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000009500000000000000000000000000000000000000000
..................................................................................................................................................GCATTGTATGACCTACTTAAC..........................................................................21115.0015000000000000000000000000000000000000000000000000000000000000000000000000000000000014300000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000100100200000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000
.....................................................................................................TTAAGTAGTGGATACAAAGGGCGAA...................................................................................................................25115.0015000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007300000000000000000000000400000000000000000
.....................................................................................................TTAAGTAGTGGATACAAAGGGA......................................................................................................................22110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000010001400000000000000000000000100010100000000000
.....................................................................................................TTAAGTAGTGGATACAAAGGCGA.....................................................................................................................2319.009000000003000000000000000000000000000000000000000000000000000000000000000000000000001300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000
.....................................................................................................TTAAGTAGTGGATACAAAGT........................................................................................................................2019.009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000800000000000000000000000000000000000000000
.....................................................................................................TTAAGTAGTGGATACAAAGGGCGAC...................................................................................................................2519.009000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004300000000000000000000000000000000000000000
......................................................................................................TAAGTAGTGGATACAAAGGGCGATT..................................................................................................................2519.009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006200000000000000000000000000000000010000000
.....................................................................................................TTAAGTAGTGGATACAAAGGGT......................................................................................................................2217.007000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000100000000000000000
.......................................................................................................AAGTAGTGGATACAAAGG........................................................................................................................1817.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000700000000000000000000000000000000000000000
.....................................................................................................TTAAGTAGTGGATACAAAGGT.......................................................................................................................2116.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000500000000000000000000000000000000000000000
.....................................................................................................TTAAGTAGTGGATACAAAGGGCC.....................................................................................................................2316.006000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001300000000000000000000000000000000000000000
.....................................................................................................TTAAGTAGTGGATACAAAGGGCT.....................................................................................................................2316.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000010000000000000000001200000000000000000000000000000000000000000
.....................................................................................................TTAAGTAGTGGATACAAAGGC.......................................................................................................................2115.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000000000000000
......................................................................................................TAAGTAGTGGATACAAAGGGCGG....................................................................................................................2315.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................AAGTAGTGGATACAAAGGGC......................................................................................................................2015.005000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001300000000000000000000000000000000000000000
..................................................................................................................................................GCATTGTATGACCTACTTAACC.........................................................................2215.005000000000000000000000000000000000000000000000000000000000000000000000000000000000001300000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................TTAAGTAGTGGATACAAAGGGCGATT..................................................................................................................2615.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000002200000000000000000000000000000000000000000
.....................................................................................................TTAAGTAGTGGATACAAAGGA.......................................................................................................................2114.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000300000000000000000000000000000000000000000
droSim2
TGTCGG------------AATA-----------AATA-TA-------------AT-A-AT-AA-T-----CGG-----AAATATT--TAGAAATTATATATTTAAGTAGTGGATACAAAAGGCGATTTGATATAAAA----GTATCGCATTGTATGGCCTACTTAACTAGCTGATT-----------------------------------------------------------------SizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
.....................................................................................................TTAAGTAGTGGATACAAAAGGCGA....................................................................................................................2415566.005566001401020012911308810328102000
..................................................................................................................................................GCATTGTATGGCCTACTTAACT.........................................................................221695.0069500616200000007700000
.................................................................................................................................................CGCATTGTATGGCCTACTTAACT.........................................................................231307.0030710296000000001000000
.....................................................................................................TTAAGTAGTGGATACAAAAGGCGG....................................................................................................................241289.0028900590000062022200000
.....................................................................................................TTAAGTAGTGGATACAAAAGGCG.....................................................................................................................231289.0028900352000087023601000
.....................................................................................................TTAAGTAGTGGATACAAAAGGCGAT...................................................................................................................251275.002750017300002316021600000
.................................................................................................................................................CGCATTGTATGGCCTACTTAAC..........................................................................221271.0027100219001000005100000
......................................................................................................TAAGTAGTGGATACAAAAGGCGAT...................................................................................................................241140.0014000040000311009500000
.....................................................................................................TTAAGTAGTGGATACAAAAGGCGC....................................................................................................................241139.001390030000046012600000
...................................................................................................................................................CATTGTATGGCCTACTTAACT.........................................................................21181.0081007600000000500000
......................................................................................................TAAGTAGTGGATACAAAAGGCGA....................................................................................................................23174.007400040000181104100000
.....................................................................................................TTAAGTAGTGGATACAAAAGGC......................................................................................................................22165.0065006001001005700000
.....................................................................................................TTAAGTAGTGGATACAAAAGG.......................................................................................................................21132.0032001006000701800000
..................................................................................................................................................GCATTGTATGGCCTACTTAACC.........................................................................22123.0023002300000000000000
.....................................................................................................TTAAGTAGTGGATACAAAAGGCGT....................................................................................................................24121.0021000000000002100000
.................................................................................................................................................CGCATTGTATGGCCTACTTAACC.........................................................................23118.0018001800000000000000
..................................................................................................................................................GCATTGTATGGCCTACTTAAC..........................................................................21117.0017001100000000600000
......................................................................................................TAAGTAGTGGATACAAAAGGCGATA..................................................................................................................25114.0014000000000201200000
.....................................................................................................TTAAGTAGTGGATACAAAAG........................................................................................................................20113.001300100900000300000
......................................................................................................TAAGTAGTGGATACAAAAGGCGATT..................................................................................................................25113.0013000000001001200000
..................................................................................................................................................GCATTGTATGGCCTACTTAACTT........................................................................2318.00800800000000000000
......................................................................................................TAAGTAGTGGATACAAAAGGCGG....................................................................................................................2318.00800000000000800000
..................................................................................................................................................GCATTGTATGGCCTACTTAACG.........................................................................2218.00800800000000000000
.....................................................................................................TTAAGTAGTGGATACAAAAGGCGAA...................................................................................................................2518.00800000001400300000
...............................................................................................................................................ATCGCATTGTATGGCCTACTTAACT.........................................................................2518.00800700000000100000
.....................................................................................................TTAAGTAGTGGATACAAAA.........................................................................................................................1918.00800000800000000000
......................................................................................................TAAGTAGTGGATACAAAAGGC......................................................................................................................2118.00800000000000800000
...............................................................................................................................................ATCGCATTGTATGGCCTACTT.............................................................................2117.00700700000000000000
.......................................................................................................AAGTAGTGGATACAAAAGGCGA....................................................................................................................2216.00600020000210100000
..............................................................................................................................................TATCGCATTGTATGGCCTACTTAACT.........................................................................2615.00500500000000000000
.....................................................................................................TTAAGTAGTGGATACAAA..........................................................................................................................1815.00500000300000200000
...................................................................................................................................................CATTGTATGGCCTACTTAACTT........................................................................2215.00500500000000000000
.......................................................................................................AAGTAGTGGATACAAAAGGCGAT...................................................................................................................2315.00500000100210100000
...............................................................................................................................................ATCGCATTGTATGGCCTACTTAAC..........................................................................2415.00500300000000200000
.................................................................................................................................................CGCATTGTATGGCCTACT..............................................................................1814.00400400000000000000
...........................................................................................................AGTGGATACAAAAGGCGA....................................................................................................................1814.00400000000011200000
......................................................................................................TAAGTAGTGGATACAAAAGGCG.....................................................................................................................2214.00400100000000300000
.....................................................................................................TTAAGTAGTGGATACAAAAGGCGATT..................................................................................................................2613.00300000000000300000
........................................................................................................................................A----GTATCGCATTGTATGGCC..................................................................................1913.00300200000000100000
.......................................................................................................................................AA----GTATCGCATTGTATGGCC..................................................................................2013.00300300000000000000
.................................................................................................................................................CGCATTGTATGGCCTACTT.............................................................................1913.00300300000000000000
...............................................................................................................................................ATCGCATTGTATGGCCTACT..............................................................................2013.00300300000000000000
..............................................................................................................GGATACAAAAGGCGA....................................................................................................................1513.00300000000120000000
.....................................................................................................TTAAGTAGTGGATACAAAAGGCGGA...................................................................................................................2512.00200000000000200000
.....................................................................................................TTAAGTAGTGGATACAAAAGGCCG....................................................................................................................2412.00200000000000200000
.....................................................................................................TTAAGTAGTGGATACAAAAA........................................................................................................................2012.00200100000000100000
.................................................................................................................................................CGCATTGTATGGCCTACTTAACG.........................................................................2312.00200200000000000000
..............................................................................................................................................TATCGCATTGTATGGCCTACT..............................................................................2112.00200200000000000000
...................................................................................................................................ATAAAA----GTATCGCATTGTATGGCC..................................................................................2412.00200200000000000000
....................................................................................................................................TAAAA----GTATCGCATTGTATGGCC..................................................................................2312.00200200000000000000
............................................................................................................GTGGATACAAAAGGCGAT...................................................................................................................1812.00200000000010100000
..................................................................................................................................TATAAAA----GTATCGCATTGTATGGCC..................................................................................2512.00200200000000000000
.....................................................................................................TTAAGTAGTGGATACAAAAGGCTC....................................................................................................................2412.00200100000000100000
..............................................................................................................................................TATCGCATTGTATGGCCTACTTAAC..........................................................................2512.00200200000000000000
...................................................................................................................................................CATTGTATGGCCTACTTAAC..........................................................................2012.00200100000000100000
......................................................................................................TAAGTAGTGGATACAAAAGGCGATC..................................................................................................................2512.00200000000000200000
......................................................................................................TAAGTAGTGGATACAAAAGGCGC....................................................................................................................2311.00100000000000100000
..................................................................................................................................................GCATTGTATGGCCTACTTAACTC........................................................................2311.00100100000000000000
......................................................................................................TAAGTAGTGGATACAAAAGG.......................................................................................................................2011.00100000000000100000
......................................................................................................TAAGTAGTGGATACAAAA.........................................................................................................................1811.00100000000000100000
......................................................................................................TAAGTAGTGGATACAAAAG........................................................................................................................1911.00100000100000000000
.....................................................................................................TTAAGTAGTGGATACAAAAGGCCC....................................................................................................................2411.00100000000000100000
..................................................................................................................................................GCATTGTATGGCCTACTTACT..........................................................................2111.00100100000000000000
..........................................................................................................TAGTGGATACAAAAGGCGA....................................................................................................................1911.00100010000000000000
...........................................................................................................AGTGGATACAAAAGGCGG....................................................................................................................1811.00100100000000000000
droSec2
TGTCGG------------AATA-----------AATA-TA-------------AT-A-AT-AA-T-----CGG-----AAATATT--TAGAAATTATATATTTAAGTAGTGGATACAAAAGGCGATTTGATATAAAA----GTATCGCATTGTATGGCCTACTTAACTAGCTGATT-----------------------------------------------------------------SizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
.....................................................................................................TTAAGTAGTGGATACAAAAGGCGA....................................................................................................................24129096.00290969922892669
.....................................................................................................TTAAGTAGTGGATACAAAAGGCGAT...................................................................................................................2512710.00271011026927
.....................................................................................................TTAAGTAGTGGATACAAAAGGCG.....................................................................................................................2312196.0021965021838
......................................................................................................TAAGTAGTGGATACAAAAGGCGAT...................................................................................................................2411998.0019985019894
......................................................................................................TAAGTAGTGGATACAAAAGGCGA....................................................................................................................231460.004601404451
.....................................................................................................TTAAGTAGTGGATACAAAAGGC......................................................................................................................221370.00370003682
.....................................................................................................TTAAGTAGTGGATACAAAAGG.......................................................................................................................211245.00245002441
......................................................................................................TAAGTAGTGGATACAAAAGGCG.....................................................................................................................22199.009900981
.....................................................................................................TTAAGTAGTGGATACAAAAGGCGAA...................................................................................................................25196.009600960
......................................................................................................TAAGTAGTGGATACAAAAGGCGATT..................................................................................................................25183.008300830
.....................................................................................................TTAAGTAGTGGATACAAAAGGCGG....................................................................................................................24179.007910780
.....................................................................................................TTAAGTAGTGGATACAAAAGGCGATT..................................................................................................................26174.007400740
......................................................................................................TAAGTAGTGGATACAAAAGGCGATA..................................................................................................................25163.006300630
......................................................................................................TAAGTAGTGGATACAAAAGGC......................................................................................................................21162.006200611
.....................................................................................................TTAAGTAGTGGATACAAAAGGCGC....................................................................................................................24151.005100510
..................................................................................................................................................GCATTGTATGGCCTACTTAACT.........................................................................22135.003540310
.......................................................................................................AAGTAGTGGATACAAAAGGCGA....................................................................................................................22130.003000300
.....................................................................................................TTAAGTAGTGGATACAAAAGGCGATA..................................................................................................................26129.002900290
.....................................................................................................TTAAGTAGTGGATACAAAAGGCGT....................................................................................................................24124.002400240
.....................................................................................................TTAAGTAGTGGATACAAAA.........................................................................................................................19122.002200220
.....................................................................................................TTAAGTAGTGGATACAAAAG........................................................................................................................20120.002000200
.....................................................................................................TTAAGTAGTGGATACAAAAGGCA.....................................................................................................................23117.001700170
.......................................................................................................AAGTAGTGGATACAAAAGGCGAT...................................................................................................................23115.001500150
.....................................................................................................TTAAGTAGTGGATACAAA..........................................................................................................................18112.001200120
.................................................................................................................................................CGCATTGTATGGCCTACTTAAC..........................................................................22111.001100110
.....................................................................................................TTAAGTAGTGGATACAAAAGGCGAC...................................................................................................................25111.001100110
...........................................................................................................AGTGGATACAAAAGGCGA....................................................................................................................18110.001000100
....................................................................................................TTTAAGTAGTGGATACAAAAGGCG.....................................................................................................................2419.0090090
......................................................................................................TAAGTAGTGGATACAAAAGG.......................................................................................................................2018.0080080
.....................................................................................................TTAAGTAGTGGATACAAAAGCGA.....................................................................................................................2318.0080080
.....................................................................................................TTAAGTAGTGGATACAAAAGGCGAAA..................................................................................................................2617.0070070
.................................................................................................................................................CGCATTGTATGGCCTACTTAACT.........................................................................2316.0060060
........................................................................................................AGTAGTGGATACAAAAGGCGA....................................................................................................................2116.0060060
..........................................................................................................TAGTGGATACAAAAGGCGA....................................................................................................................1914.0040040
......................................................................................................TAAGTAGTGGATACAAAA.........................................................................................................................1814.0040040
.....................................................................................................TTAAGTAGTGGATACAAAAGGCC.....................................................................................................................2314.0040040
..................................................................................................................................................GCATTGTATGGCCTACTTAAC..........................................................................2113.0030030
.....................................................................................................TTAAGTAGTGGATACAAAAGGCGATTT.................................................................................................................2713.0030030
...................................................................................................................................................CATTGTATGGCCTACTTAACT.........................................................................2112.0020020
...........................................................................................................AGTGGATACAAAAGGCGAT...................................................................................................................1912.0020020
.......................................................................................................AAGTAGTGGATACAAAAGGC......................................................................................................................2012.0020020
.....................................................................................................TTAAGTAGTGGATACAAAAGGCGATC..................................................................................................................2612.0020020
......................................................................................................TAAGTAGTGGATACAAAAGGCGATC..................................................................................................................2512.0020020
......................................................................................................TAAGTAGTGGATACAAAAGGCGAC...................................................................................................................2412.0020020
.........................................................................................................GTAGTGGATACAAAAGGCGA....................................................................................................................2012.0020020
.......................................................................................................AAGTAGTGGATACAAAAGG.......................................................................................................................1912.0020020
..........................................................................................................TAGTGGATACAAAAGGCGAT...................................................................................................................2012.0020020
......................................................................................................TAAGTAGTGGATACAAAAGGCGG....................................................................................................................2311.0010010
......................................................................................................TAAGTAGTGGATACAAAAGGCGATTC.................................................................................................................2611.0010010
......................................................................................................TAAGTAGTGGATACAAAAGGCAT....................................................................................................................2311.0010010
.....................................................................................................TTAAGTAGTGGATACAAAAGGCGACC..................................................................................................................2611.0010010
............................................................................................................GTGGATACAAAAGGCGAT...................................................................................................................1811.0010010
droYak3
ATTAGT------------TATTTATTGAAGA--GCA---------TTAT-------GC-----TT-----CGA-----AGT--TTTAAAAAAATTATATATTTAAGTAGTGGATACAAAAGGCGATTG-ATATAAAA----ATGTCGCATTGTATGGCCTACTTAACTAGCTGATT-----------------------------------------------------------------SizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
.....................................................................................................TTAAGTAGTGGATACAAAAGGCGA....................................................................................................................24124940.00249400182249824172500000
..................................................................................................................................................GCATTGTATGGCCTACTTAACT.........................................................................2213854.003854103794590000000
.....................................................................................................TTAAGTAGTGGATACAAAAGGCG.....................................................................................................................2311165.0011650210351270100000
..................................................................................................................................................GCATTGTATGGCCTACTTAACC.........................................................................221937.009370093700000000
......................................................................................................TAAGTAGTGGATACAAAAGGCGA....................................................................................................................231474.0047402428440000000
.....................................................................................................TTAAGTAGTGGATACAAAAGGC......................................................................................................................221293.0029300280130000000
.....................................................................................................TTAAGTAGTGGATACAAAAGG.......................................................................................................................211194.0019400178160000000
......................................................................................................TAAGTAGTGGATACAAAAGGCGAT...................................................................................................................241160.0016000146130100000
..................................................................................................................................................GCATTGTATGGCCTACTTAAC..........................................................................211156.001560015510000000
.....................................................................................................TTAAGTAGTGGATACAAAAGGCGG....................................................................................................................241140.0014000291110000000
.....................................................................................................TTAAGTAGTGGATACAAAAGGCGAT...................................................................................................................25194.0094008860000000
.....................................................................................................TTAAGTAGTGGATACAAAAGGCGC....................................................................................................................24183.00830014690000000
......................................................................................................TAAGTAGTGGATACAAAAGGCG.....................................................................................................................22148.0048003990000000
.....................................................................................................TTAAGTAGTGGATACAAAAGGCGAC...................................................................................................................25140.0040003730000000
.................................................................................................................................................CGCATTGTATGGCCTACTTAAC..........................................................................22130.0030002910000000
......................................................................................................TAAGTAGTGGATACAAAAGGCGAC...................................................................................................................24128.0028002800000000
.....................................................................................................TTAAGTAGTGGATACAAAAGGCGT....................................................................................................................24127.00270017100000000
......................................................................................................TAAGTAGTGGATACAAAAGGC......................................................................................................................21122.0022002020000000
.....................................................................................................TTAAGTAGTGGATACAAAAGGCGAA...................................................................................................................25122.0022002200000000
....................................................................................................................................................ATTGTATGGCCTACTTAACT.........................................................................20117.0017001700000000
.......................................................................................................AAGTAGTGGATACAAAAGGCGA....................................................................................................................22116.0016001510000000
.....................................................................................................TTAAGTAGTGGATACAAAAG........................................................................................................................20116.0016001510000000
...................................................................................................................................................CATTGTATGGCCTACTTAACT.........................................................................21115.0015001320000000
..................................................................................................................................................GCATTGTATGGCCTACTTAACTT........................................................................23115.0015001500000000
......................................................................................................TAAGTAGTGGATACAAAAGGCGATT..................................................................................................................25112.0012001200000000
.....................................................................................................TTAAGTAGTGGATACAAAAGGCC.....................................................................................................................23110.0010001000000000
.........................................................................................................GTAGTGGATACAAAAGGCGA....................................................................................................................2018.00800700100000
.................................................................................................................................................CGCATTGTATGGCCTACTTAACT.........................................................................2317.00710600000000
..................................................................................................................................................GCATTGTATGGCCTACTTAACA.........................................................................2216.00600600000000
.....................................................................................................TTAAGTAGTGGATACAAAAGGCA.....................................................................................................................2316.00600600000000
...........................................................................................................AGTGGATACAAAAGGCGA....................................................................................................................1816.00600420000000
.....................................................................................................TTAAGTAGTGGATACAAAAGGCGATT..................................................................................................................2616.00600600000000
...................................................................................................................................................CATTGTATGGCCTACTTAACC.........................................................................2116.00600600000000
..........................................................................................................TAGTGGATACAAAAGGCGA....................................................................................................................1915.00500500000000
......................................................................................................TAAGTAGTGGATACAAAAGGCGG....................................................................................................................2315.00500050000000
.....................................................................................................TTAAGTAGTGGATACAAAAGGCT.....................................................................................................................2313.00300300000000
................................................................................................................................................TCGCATTGTATGGCCTACTTAACT.........................................................................2413.00300300000000
.......................................................................................................AAGTAGTGGATACAAAAGGCG.....................................................................................................................2113.00300300000000
......................................................................................................TAAGTAGTGGATACAAAAGG.......................................................................................................................2013.00300300000000
..............................................................................................................................................TGTCGCATTGTATGGCCTACTTAACT.........................................................................2612.00200020000000
.......................................................................................................AAGTAGTGGATACAAAAGG.......................................................................................................................1912.00200200000000
.......................................................................................................................................AA----ATGTCGCATTGTATGGC...................................................................................1912.00200200000000
.....................................................................................................TTAAGTAGTGGATACAAAAGGCGAG...................................................................................................................2512.00200200000000
......................................................................................................TAAGTAGTGGATACAAAAGGCGATA..................................................................................................................2512.00200200000000
.................................................................................................................................................CGCATTGTATGGCCTACTTAACC.........................................................................2312.00200200000000
.....................................................................................................TTAAGTAGTGGATACAAAAGGG......................................................................................................................2212.00200110000000
....................................................................................................................................................ATTGTATGGCCTACTTAACC.........................................................................2012.00200200000000
.....................................................................................................................................AAAA----ATGTCGCATTGTATGGCCTACT..............................................................................2612.00200200000000
.....................................................................................................TTAAGTAGTGGATACAAAAGGCCT....................................................................................................................2412.00200020000000
droEre2
ATTAGT------------TCTATA-------------------------------------------------TT--AA-T---TGATCAAAATTATATATCTAAGTAGTGGATACAAACGGCGATTTGGTATAAAA----ATGTCGCATTGTATGACCTGCTTAACTAGCTGATT-----------------------------------------------------------------SizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.....................................................................................................CTAAGTAGTGGATACAAACGGCGA....................................................................................................................2411431.00143115310420235010
..................................................................................................................................................GCATTGTATGACCTGCTTAACT.........................................................................221327.0032719296012000
.....................................................................................................CTAAGTAGTGGATACAAACGGCG.....................................................................................................................231131.001312062049000
.....................................................................................................CTAAGTAGTGGATACAAACGGC......................................................................................................................221102.00102378020010
...................................................................................................................................................CATTGTATGACCTGCTTAACT.........................................................................21162.006235009000
..................................................................................................................................................GCATTGTATGACCTGCTTAACC.........................................................................22148.004804800000
......................................................................................................TAAGTAGTGGATACAAACGGCGAT...................................................................................................................24147.0047136010000
.....................................................................................................CTAAGTAGTGGATACAAACGGCGG....................................................................................................................24130.003012027000
.....................................................................................................CTAAGTAGTGGATACAAACGGCGAT...................................................................................................................25129.002932303000
......................................................................................................TAAGTAGTGGATACAAACGGCGA....................................................................................................................23118.001810701000
.....................................................................................................CTAAGTAGTGGATACAAACGG.......................................................................................................................21112.00123702000
.....................................................................................................CTAAGTAGTGGATACAAACGGCGC....................................................................................................................2419.0090306000
..................................................................................................................................................GCATTGTATGACCTGCTTAAC..........................................................................2118.0080701000
.....................................................................................................CTAAGTAGTGGATACAAACGGCGAC...................................................................................................................2518.0080404000
......................................................................................................TAAGTAGTGGATACAAACGGCGAC...................................................................................................................2417.0070700000
.................................................................................................................................................CGCATTGTATGACCTGCTTAACT.........................................................................2316.0060501000
...................................................................................................................................................CATTGTATGACCTGCTTAACC.........................................................................2115.0050500000
.....................................................................................................CTAAGTAGTGGATACAAAC.........................................................................................................................1914.0040301000
......................................................................................................TAAGTAGTGGATACAAACGGCG.....................................................................................................................2213.0030201000
.....................................................................................................CTAAGTAGTGGATACAAACGGCGT....................................................................................................................2413.0031101000
....................................................................................................................................................ATTGTATGACCTGCTTAACT.........................................................................2013.0031200000
.....................................................................................................CTAAGTAGTGGATACAAACGGCGATT..................................................................................................................2612.0020101000
.....................................................................................................CTAAGTAGTGGATACAAACGGCC.....................................................................................................................2312.0020002000
......................................................................................................TAAGTAGTGGATACAAACGGC......................................................................................................................2112.0020101000
.....................................................................................................CTAAGTAGTGGATACAAACGGCGAA...................................................................................................................2512.0020200000
...................................................................................................................................................CATTGTATGACCTGCTTAACTT........................................................................2211.0010100000
...................................................................................................................................................CATTGTATGACCTGCTTAAC..........................................................................2011.0010100000
.....................................................................................................CTAAGTAGTGGATACAAACGA.......................................................................................................................2111.0011000000
.................................................................................................................................................CGCATTGTATGACCTGCTTAAC..........................................................................2211.0010100000
.......................................................................................................AAGTAGTGGATACAAACGGCGA....................................................................................................................2211.0011000000
..................................................................................................................................................GCATTGTATGACCTGCTTAA...........................................................................2011.0010001000
......................................................................................................TAAGTAGTGGATACAAACGGCGATT..................................................................................................................2511.0010001000
..................................................................................................................................................GCATTGTATGACCTGCTTAAT..........................................................................2111.0010001000
.....................................................................................................CTAAGTAGTGGATACAAACGCGA.....................................................................................................................2311.0011000000
...................................................................................................................................................CATTGTATGACCTGCTTAACG.........................................................................2111.0011000000
..................................................................................................................................................GCATTGTATGACCTGCTTAACA.........................................................................2211.0010100000
.....................................................................................................CTAAGTAGTGGATACAAACGGCGAGA..................................................................................................................2611.0010100000
.....................................................................................................CTAAGTAGTGGATACAAACGT.......................................................................................................................2111.0010001000

Generated: 10/20/2015 at 06:54 PM