dpe_562

CDS [Dper\GL19350-cds]; exon [dper_GLEANR_21490:2]; exon [dper_GLEANR_21490:1]; CDS [Dper\GL19350-cds]; intron [Dper\GL19350-in]

##################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------#################################----------------- TTCGACACTCCACCGAGCACCGTAAAGCTATTTTGTTGGAACTGTCACCGGTACGTGTCCGTCGCAGAGGCGTCAGTCGCTTTTGCTTTTGGTTAAAAAATTTGAAATTTATTTTGCTAAATTTTGTTCCAACTCGAACGAAATACTTTGAATTTTGAGGTGTTGTTCGTACAAAATGTGGGAGTGGAATGAAATTTTTGCTACGAAAGATTATCGTCGTTTGTTTTCATAAATCTAAGATTTTTGAAAATATCAAATGCCAAAAAAGCCTTTGATTTCTCCATCTAATCTAGTAGTTTCTTAGTTATTCTTATTATTTGTACAGTCTGTGGACTTCTGGAGGCAGTCACAAATCTAGCCCTTCTCAAGACCCAC ************************************************(((((...(((..(((((((((.....)))))))))...))).............((((((......))))))((((((......))))))((((((((((...))))))))))...)))))....((((.(((((((((((.......(((((...((((((.........(((((((.(((((...))))).)))))))((((((.((.......)).)))))).........)))))).))))).......)))))))....)))).)))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V111 male body	V050 head	V057 head
.......................AAAGCTATTTTGTTGGAACTG...........................................................................................................................................................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0
......................................GAACTGTCACCGGTACGTGT.............................................................................................................................................................................................................................................................................................................................	20	0	1	1.00	1	1	0	0
.......................................................................................................................................................................CGTACAAATTATGGGAGTGTAA..........................................................................................................................................................................................	22	3	2	0.50	1	1	0	0
.........................................................................................................................................................................................................................................................................................................TGCTTAGTTATTCTTATT............................................................	18	1	2	0.50	1	0	1	0
.......................................................................................................................................................................CGTACAAATTATGGGAGTGTA...........................................................................................................................................................................................	21	3	5	0.20	1	0	0	1

AAGCTGTGAGGTGGCTCGTGGCATTTCGATAAAACAACCTTGACAGTGGCCATGCACAGGCAGCGTCTCCGCAGTCAGCGAAAACGAAAACCAATTTTTTAAACTTTAAATAAAACGATTTAAAACAAGGTTGAGCTTGCTTTATGAAACTTAAAACTCCACAACAAGCATGTTTTACACCCTCACCTTACTTTAAAAACGATGCTTTCTAATAGCAGCAAACAAAAGTATTTAGATTCTAAAAACTTTTATAGTTTACGGTTTTTTCGGAAACTAAAGAGGTAGATTAGATCATCAAAGAATCAATAAGAATAATAAACATGTCAGACACCTGAAGACCTCCGTCAGTGTTTAGATCGGGAAGAGTTCTGGGTG ************************************************(((((...(((..(((((((((.....)))))))))...))).............((((((......))))))((((((......))))))((((((((((...))))))))))...)))))....((((.(((((((((((.......(((((...((((((.........(((((((.(((((...))))).)))))))((((((.((.......)).)))))).........)))))).))))).......)))))))....)))).)))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V111 male body	V057 head	V050 head	M042 female body	V042 embryo
....TGTGAGGTGGCTCGTGGCAT...............................................................................................................................................................................................................................................................................................................................................................	20	0	1	2.00	2	2	0	0	0	0
.......GAGGTGGCTCGTGGCATTTCGAT.........................................................................................................................................................................................................................................................................................................................................................	23	0	1	1.00	1	1	0	0	0	0
.....GTGAGGTGGCTCGTGGCAT...............................................................................................................................................................................................................................................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0
....AAAGAGGTGGCTCGTGGCATTTCG...........................................................................................................................................................................................................................................................................................................................................................	24	3	1	1.00	1	1	0	0	0	0
..............................................TGGCCAAGCACAGCCAGCGTTT...................................................................................................................................................................................................................................................................................................................	22	3	2	0.50	1	0	0	1	0	0
..............................................TGGGCAAGCACAGCCAGCGTCT...................................................................................................................................................................................................................................................................................................................	22	3	2	0.50	1	0	1	0	0	0
....................................AGCTTCACAGTGGGCATGC................................................................................................................................................................................................................................................................................................................................	19	3	6	0.17	1	0	1	0	0	0
....................................ACGTTGACAGTGGGCATGTA...............................................................................................................................................................................................................................................................................................................................	20	3	10	0.10	1	0	0	1	0	0
.......................................................................................................................................................................................................................................................................GTTTCTGAAACTAAAGAG..............................................................................................	18	2	15	0.07	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................CGAAAAGTAAAGAGGCAGAT........................................................................................	20	3	19	0.05	1	0	1	0	0	0
....................................ACCTTGACACTTGCCATCC................................................................................................................................................................................................................................................................................................................................	19	3	20	0.05	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................AGATCATCCAATAATGAAT....................................................................	19	3	20	0.05	1	0	0	0	0	1
.........GGTCGGTCGTGGCATTCCG...........................................................................................................................................................................................................................................................................................................................................................	19	3	20	0.05	1	0	0	0	1	0

Species	Coordinate	ID	Alignment
droPer2	scaffold_1:4752494-4752868 +	dpe_562	TTCGACACTCCACCGAGCACCGTAAAGCTATTTTGTTGGAACTGTCACCGGTACGTGTCCGTCGCAGAGGCGTCAGTCGCTTTTGCTTTTGGTTAAAAAATTTGAAATTTATTTTGCTAAATTTTGTTCCAACTCGAACGAAATACTTTGAATTTTGAGGTGTTGTTCGTACAAAATGTGGGAGTGGAATGAAATTTTTGCTACGAAAGATTATCGTCGTTTGTTTTCATAAATCTAAGATTTT---TGAAAATATCAAATGCCAAAAAAGCCTTTGATTTCTCCATCTAATCTAGTAGTTTCTTAGTTATTCTTATTATTTGTACAGTCTGTG-----------------------GACTTCTGGAGGCAGTCACAAATCTAGCCCTTCTCAAGACCCAC
dp5	4_group3:3271012-3271398 +		TTCGACACTCCAACGAGCACCGTAAAGCTATTTTGTTGGAACTGTCACCGGTACGTGTCCGTCGCAGAGGCGTCAGTCGCTTTTGCCTTTGGTTAAAAAATTTGAAATTTATTTTGCTAAATTTTGTTCCAACTCGAACGAAATATTTTTAATTTTGAGGTGTTGTTCGTACAAAAGGTGGGAGTGGAATGAAATTTTTGCTATGAAAGTTTATT---GTTTGTTTTCATAAATCCGAGATTTCGAACGAAAATATCAAATGCCAAAAAAGCCTTTGATTTCTTAATATATTCTAGCAGTTTCTTAGTTATTCTTATTATTTGTTCAGCCTGTGATTGTTACCTCCACAGTGGAAGCGAATTCAAGAGGCAGTC-----------TCTTCTTGGGACCCAC
droBip1	scf7180000396580:683217-683279 -		T-----------------------------------------------------------------------------------------------------------TTATTTTGGAAATTTTGTTTCAAACTTGGAGAGACTCCATCGGATTCTGGGATGCCTTCCGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droPer2

TTCGACACTCCACCGAGCACCGTAAAGCTATTTTGTTGGAACTGTCACCGGTACGTGTCCGTCGCAGAGGCGTCAGTCGCTTTTGCTTTTGGTTAAAAAATTTGAAATTTATTTTGCTAAATTTTGTTCCAACTCGAACGAAATACTTTGAATTTTGAGGTGTTGTTCGTACAAAATGTGGGAGTGGAATGAAATTTTTGCTACGAAAGATTATCGTCGTTTGTTTTCATAAATCTAAGATTTT---TGAAAATATCAAATGCCAAAAAAGCCTTTGATTTCTCCATCTAATCTAGTAGTTTCTTAGTTATTCTTATTATTTGTACAGTCTGTG-----------------------GACTTCTGGAGGCAGTCACAAATCTAGCCCTTCTCAAGACCCAC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.......................AAAGCTATTTTGTTGGAACTG.....................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
......................................GAACTGTCACCGGTACGTGT.......................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1

dp5

TTCGACACTCCAACGAGCACCGTAAAGCTATTTTGTTGGAACTGTCACCGGTACGTGTCCGTCGCAGAGGCGTCAGTCGCTTTTGCCTTTGGTTAAAAAATTTGAAATTTATTTTGCTAAATTTTGTTCCAACTCGAACGAAATATTTTTAATTTTGAGGTGTTGTTCGTACAAAAGGTGGGAGTGGAATGAAATTTTTGCTATGAAAGTTTATT---GTTTGTTTTCATAAATCCGAGATTTCGAACGAAAATATCAAATGCCAAAAAAGCCTTTGATTTCTTAATATATTCTAGCAGTTTCTTAGTTATTCTTATTATTTGTTCAGCCTGTGATTGTTACCTCCACAGTGGAAGCGAATTCAAGAGGCAGTC-----------TCTTCTTGGGACCCAC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
................................................................................................................................................................TGTTGTTCGTACAAAAGGTGG............................................................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	3	0
.....................................................................................................................................................TAATTTTGAGGTGTTGTTCG........................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	2	0
...........................CTATTTTGTTGGAACTGTCAC.................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	2	0
.............................................................................................................................................................AGGTGTTGTTCGTACAAAAGA...............................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	2	0
..............................TTTTGTTGGAACTGTCACCGG..............................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0
...................................TTGGAACTGTCACCGGTACG..........................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.......................AAAGCTATTTTGTTGGAACTG.....................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..................................GTTGGAACTGTCACCGGTACG..........................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
...................CCGTAAAGCTATTTTGTTGG..........................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	1	0
................................TTGTTGGAACTGTCACCGG..............................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	1	0
...........................CTATTTTGTTGGAACTGTCACCGGTA............................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.......................................................................................................................................................................CGTACAAAAGGTGGGAGTGGAATG..................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	1	0
..CGACACTCCAACGAGCACCG...........................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.................CACCGTAAAGCTATTTTGTTG...........................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0
......................................GAACTGTCACCGGTACGTGTC......................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.................................................GGTACGTGTCCGTCGCAGAG............................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.......................................................TGTCCGTCGCAGAGGCGTCAG.....................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0
..............................TTTTGTTGGAACTGTCACCG...............................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	1	0
....................CGTAAAGCTATTTTGTTGGA.........................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	1	0
......................................................................................................................................................AATTTTGAGGTGTTGTTCGTA......................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................................................................TTCGTACAAAAGGTGGGAGTGGAATG..................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0
...............................TTTGTTGGAACTGTCACCG...............................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	1	0
................................TTGTTGGAACTGTCACCGGT.............................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	1	0
........................AAGCTATTTTGTTGGAACTG.....................................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	0	0	0	1	0

droBip1

T-----------------------------------------------------------------------------------------------------------TTATTTTGGAAATTTTGTTTCAAACTTGGAGAGACTCCATCGGATTCTGGGATGCCTTCCGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dpe_562

scaffold_1:4752544-4752818 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads