dpe_560

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TACCGCGCGACCGCTACACACGTGAGAGCCGAGGGCTTTGCTTTCGTGCGGTAAGTTTTCCGATACGGAGAAAGGGGCTCTCTCTTCAAAATAGCGACGGTTGATCTACTTGCATATCTTGCTACGAAGTAGCATATGCACATTACCCATTTATGATCGTATCCCAAGCAATAATGAGATGCCAGATTAAATGTGTTCTCTTGCAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN ************************************************((((((((((((...))))))(((((.....))))).....((((....))))....))))))......((((((...))))))...(((((((.........((((((((((.((........)).)))))..)))))))))))).....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M042 female body	M021 embryo	V111 male body	V050 head	V057 head	V042 embryo
.................................................................................................................................................................................GATGCCAGATAAAATGTGT.......................................................	19	1	1	3.00	3	0	0	3	0	0	0
.............CTACACACGTGAGAGCCGAGG.........................................................................................................................................................................................................................	21	0	1	1.00	1	0	0	1	0	0	0
.....................................................................................................................................................TTTATGTTCGTATTCCAAGC..................................................................................	20	2	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................ATAAAATGTGTTCTCTTGCAA.............................................	21	1	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................GATGCCAGATAAAATGTGTTCTCTTGC...............................................	27	1	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................ATGCCAGATAAAATGTGTTCTC...................................................	22	1	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................TATGAGATGCCAGATAAAATGTG........................................................	23	2	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................CTTGCTACAAAATAACATATGC................................................................................................................	22	3	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................ATAAAATGTGTTCTCTTGCA..............................................	20	1	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................GATGCCAGATAAAATGTGTTCTCTTG................................................	26	1	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................TATGAGATGCCAGATAAAATGTGTT......................................................	25	2	1	1.00	1	1	0	0	0	0	0
..........................................................................................................TAATTGCATATCTTGGTACGCA...........................................................................................................................	22	3	1	1.00	1	0	0	0	1	0	0
.......................................................................................................................................................................................AGATAAAATGTGTTCTCTTGCA..............................................	22	1	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................ATGCCAGATAAAATGTGTTCTCTT.................................................	24	1	1	1.00	1	1	0	0	0	0	0
............................................................................................................CTTGCATTTCTTGCTACAAA...........................................................................................................................	20	2	2	0.50	1	1	0	0	0	0	0
...........................................................CCGGTACGCAGAATGGGGCT............................................................................................................................................................................	20	3	6	0.17	1	0	0	0	0	1	0
..........................................................................................ATAGAGACGGCAGATCTACT.............................................................................................................................................	20	3	7	0.14	1	0	0	0	0	1	0
.......................................................................................................................................................TATGTTCGTATTCCAAGC..................................................................................	18	2	7	0.14	1	0	1	0	0	0	0
...................................CTTTGCTTTCGTGCGGTTCT....................................................................................................................................................................................................	20	3	20	0.10	2	0	2	0	0	0	0
...............................................................TACGGACAAGGGGGATCTC.........................................................................................................................................................................	19	3	15	0.07	1	0	0	0	0	0	1
.............................................................GTTACGGAGACAGGCGCT............................................................................................................................................................................	18	3	20	0.05	1	1	0	0	0	0	0

ATGGCGCGCTGGCGATGTGTGCACTCTCGGCTCCCGAAACGAAAGCACGCCATTCAAAAGGCTATGCCTCTTTCCCCGAGAGAGAAGTTTTATCGCTGCCAACTAGATGAACGTATAGAACGATGCTTCATCGTATACGTGTAATGGGTAAATACTAGCATAGGGTTCGTTATTACTCTACGGTCTAATTTACACAAGAGAACGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN ************************************************((((((((((((...))))))(((((.....))))).....((((....))))....))))))......((((((...))))))...(((((((.........((((((((((.((........)).)))))..)))))))))))).....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V050 head
................................................................................TGAGCAGTTTTATCGCTACCAA.....................................................................................................................................................	22	3	2	0.50	1	1

Species	Coordinate	ID	Alignment
droPer2	scaffold_1:4601193-4601443 -	dpe_560	TACCGCGCGACCGCTACACACGTGAGAGCCGAGGGCTTTGCTTTCGTGCGGTAAGTTTTCCGATACGGAGAAAGGGGCTCTCTCTTCAAAATAGCGACGGTTGATCTACTTGCATATCTTGC---------------------TACGAAGTAGCATATGCACATTACC------CATTTATGATCGTATCCCAAGCAATAATGAGATGCCAGATTAAATGTGTTCTCTTGCAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
dp5	4_group3:3118425-3118627 -	dps_1527	TACCGCGCGACCGCTACACACGTGAGAGCCGAG-GCTTTGCTTTCGTGCGGTAAGTTTTCCCATACGGAGAAAGATGCTTTCTCTTTAAAATAACGGCGGTT-ACCTTCTTGCATTTCTTGC---------------------TACAAAATAACATATGCACATTACC------C-TTTATGTTCGTATTCCAAGCAAT-ATGAGATGCCAGATAAAATGTGTTCTCTTGCAAC--------------------------------------------
droWil2	scf2_1100000004521:10182636-10182690 -		TACCAAGGGACCGCTATACACGTGAAAGCCGCG-GTTTTGCCTTTGTGCGGTAAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3	scaffold_13246:1623105-1623159 -		TACCACGCGATCGTTACACACGTGAAAGTCGCG-GATTTGCTTTCGTGCGGTGAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3	scaffold_6500:4293675-4293729 +		TACCACGCGATCGCTACACACGTGAAAGTCGCG-GATTTGCCTTTGTGCGGTAAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2	scaffold_15252:15611777-15611831 +		TCCCACGTGATCGTTACACACGTGAAAGTCGCG-GATTCGCCTTCGTACGGTAAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3	scaffold_12916:12960470-12960649 +		TACCCAGGGATCGTTACACACGCGAAAGCCGTG-GATTCGCATTCGTGCGGTGAGTTTACAG-----------------------------------------ACCTATTTGTTTACCCTACCATTAATTATGCATTATTTGCCTTGACTGAGAATGTGCTAGCTACATCTGGACATTTTCGTTCGCAAAAC------------GATGCCAGAGGAAGTGTGTTCCCTTGCAAC--------------------------------------------
droBip1	scf7180000396580:565013-565071 -		TACCCAGGGATCGTTACACACGCGAGAGCCGTG-GTTTCGCATTTGTGCGGTGAGTTTCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1	scf7180000302472:789615-789672 -		TACCGCGGGATCGCTACACACGTGAGAGTCGTG-GATTCGCCTTTGTGCGGTAAGTCTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1	scf7180000454015:318949-319003 -		TACCTAGAGATCGTTACACACGCGAGAGCCGCG-GATTCGCCTTCGTGCGGTAAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1	scf7180000491028:2680080-2680139 +		TACCCAGGGATCGCTACACGCGCGAAAGCCGCG-GTTTTGCCTTCGTTCGGTAAGTATCCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1	scf7180000780043:295074-295132 -		TACCCAGAGATCGCTACACGCGCGAGAGCCGCG-GTTTTGCCTTTGTTCGGTAAGTATTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1	scf7180000302422:537836-537895 +		TACCCCGGGATCGCTACACGCGCGAGAGCCGTG-GATTCGCCTTTGTGCGGTAAGTAGTCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1	scf7180000415865:162304-162358 +		TACCCCGGGATCGCTACACCCGCGAGAGCCGCG-GATTCGCCTTTGTGCGGTAAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1	scf7180000409122:819872-819931 -		TACCCAGGGATCGCTACACACGCGAGAGTCGTG-GATTCGCTTTCGTGCGGTAAGTAATCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3	chr2L:12433569-12433627 -		TACCCAGGGATCGCTACACACGTGAGAGCCGCG-GATTCGCATTTGTTCGGTAAGCATTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2	2l:12089700-12089758 -		TACCCAGGGATCGCTACACACGCGAGAGCCGCG-GATTCGCATTTGTTCGGTAAGCATTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2	scaffold_16:623817-623875 -		TACCCAGGGATCGCTACACACGCGAGAGCCGCG-GATTCGCATTTGTTCGGTAAGCATTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3	2L:8869976-8870034 -		TACCCAGGGATCGCTACACACGCGAGAGCCGCG-GATTCGCCTTTGTTCGGTAAGCATTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2	scaffold_4929:12983018-12983076 +		TACCCAGGGATCGCTACACACGTGAGAGCCGCG-GATTCGCCTTTGTTCGGTAAGCATTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droPer2

TACCGCGCGACCGCTACACACGTGAGAGCCGAGGGCTTTGCTTTCGTGCGGTAAGTTTTCCGATACGGAGAAAGGGGCTCTCTCTTCAAAATAGCGACGGTTGATCTACTTGCATATCTTGC---------------------TACGAAGTAGCATATGCACATTACC------CATTTATGATCGTATCCCAAGCAATAATGAGATGCCAGATTAAATGTGTTCTCTTGCAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.............CTACACACGTGAGAGCCGAGG....................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
...................................CTTTGCTTTCGTGCGGTTCT...............................................................................................................................................................................................................................	20	20	0.10	2	2	0	0	0	0	0

dp5

TACCGCGCGACCGCTACACACGTGAGAGCCGAG-GCTTTGCTTTCGTGCGGTAAGTTTTCCCATACGGAGAAAGATGCTTTCTCTTTAAAATAACGGCGGTT-ACCTTCTTGCATTTCTTGC---------------------TACAAAATAACATATGCACATTACC------C-TTTATGTTCGTATTCCAAGCAAT-ATGAGATGCCAGATAAAATGTGTTCTCTTGCAAC--------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
............................................................................................................................................................ATGCACATTACC------C-TTTATGTTCGT...........................................................................................	24	1	2.00	2	0	0	1	0	1	0	0	0	0	0
............................................................................................................................................................................................................GATGCCAGATAAAATGTGTT......................................................	20	1	2.00	2	0	0	0	0	2	0	0	0	0	0
...........................................................................................................................................................................................ATTCCAAGCAAT-ATGAGATGCCA...................................................................	23	1	2.00	2	0	0	0	0	2	0	0	0	0	0
............................................................................................................................................................ATGCACATTACC------C-TTTATGTTC.............................................................................................	22	1	2.00	2	0	0	2	0	0	0	0	0	0	0
............................................................................................................................................................................................................GATGCCAGATAAAATGTGTTCTC...................................................	23	1	2.00	2	0	0	2	0	0	0	0	0	0	0
............................................................................................................................................................................................................GATGCCAGATAAAATGTGT.......................................................	19	1	2.00	2	0	1	0	0	1	0	0	0	0	0
............................................................................................................................................................................................TTCCAAGCAAT-ATGAGATGCC....................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...........CGCTACACACGTGAGAGCCGAG-GCTTT...............................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................AACATATGCACATTACC------C-TT....................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..............TACACACGTGAGAGCCGAG-GCTTTGCT............................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................TGAGATGCCAGATAAAATGTGTTCT....................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................ATGAGATGCCAGATAAAATGTGTT......................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............CTACACACGTGAGAGCCGAG-GC..................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................AACATATGCACATTACC------C-TTTATGTTC.............................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................TGCCAGATAAAATGTGTTCTCT..................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................AAT-ATGAGATGCCAGATAAAATGTGTTCT....................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0
............................................................................................................CTTGCATTTCTTGC---------------------TACAAA.................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................AACATATGCACATTACC------C-TTTATGTTCGT...........................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................CAAGCAAT-ATGAGATGCC....................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................AAATGTGTTCTCTTGCAAC--------------------------------------------	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................T-ATGAGATGCCAGATAAAATGTGTT......................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................GATGCCAGATAAAATGTGTTCTCTTG................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................ATATGCACATTACC------C-TTTATGTTC.............................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..........................................................................................................................................................................................TATTCCAAGCAAT-ATGAGATGCC....................................................................	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.................................................................................................................................................................CATTACC------C-TTTATGTTCGTATTCCAAGC..................................................................................	28	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.............................................................................................................................................................................................TCCAAGCAAT-ATGAGATGCCA...................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.................................................................................................................................................................CATTACC------C-TTTATGTTCGTA..........................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..........................................................................................................................................................ATATGCACATTACC------C-TTTATGTTCGT...........................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................GTATTCCAAGCAAT-ATGAGATGCCAGAT................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................GCCAGATAAAATGTGTTCTC...................................................	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...................ACGTGAGAGCCGAG-GCTTTGCT............................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................................................C-TTTATGTTCGTATTCCAAGC..................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................ATGAGATGCCAGATAAAAT...........................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................AAAATAACATATGCACATTACC------C-......................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................GCCAGATAAAATGTGTTCTCTTGCA..............................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................GTATTCCAAGCAAT-ATGAGATGCCA...................................................................	25	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...........................................................................................................................................................................................ATTCCAAGCAAT-ATGAGATGCCAGAT................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0
............................................................................................................................................................................................................GATGCCAGATAAAATGTGTTCTCTTGC...............................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	1
......................................................................................................................................................................................................T-ATGAGATGCCAGATAAAA............................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................CCAAGCAAT-ATGAGATGCCA...................................................................	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.....................................................................................................................................................ATAACATATGCACATTACC------C-TTTATGTTC.............................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0

droWil2

TACCAAGGGACCGCTATACACGTGAAAGCCGCG-GTTTTGCCTTTGTGCGGTAAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.............CTATACACGTGAAAGCCGCG-....................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
......................TGAAAGCCGCG-GTTTTGC.............................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0

droVir3

TACCACGCGATCGTTACACACGTGAAAGTCGCG-GATTTGCTTTCGTGCGGTGAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
......GCGATCGTTACACACGTGAAAGTC........................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............TTACACACGTGAAAGTCGCG-GATTTGC.............................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TACCACGCGATCGCTACACACGTGAAAGTCGCG-GATTTGCCTTTGTGCGGTAAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...........CGCTACACACGTGAAAGT.........................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
........GATCGCTACACACGTGAAAGTCGCG-G...................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0

droGri2

TCCCACGTGATCGTTACACACGTGAAAGTCGCG-GATTCGCCTTCGTACGGTAAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droAna3

TACCCAGGGATCGTTACACACGCGAAAGCCGTG-GATTCGCATTCGTGCGGTGAGTTTACAG-----------------------------------------ACCTATTTGTTTACCCTACCATTAATTATGCATTATTTGCCTTGACTGAGAATGTGCTAGCTACATCTGGACATTTTCGTTCGCAAAAC------------GATGCCAGAGGAAGTGTGTTCCCTTGCAAC--------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.................................................................................................................................TATGCATTATTTGCCTTGACTGAGAAT..........................................................................................................................	27	1	42.00	42	3	21	1	1	15	1
...........................................................................................................................................................................................AAAAC------------GATGCCAGAGGAAGTGT.........................................................	22	1	10.00	10	0	5	0	0	5	0
..............................................................................................................................................................................................................TGCCAGAGGAAGTGTGTTCCCT..................................................	22	1	10.00	10	0	1	6	0	0	3
.................................................................................................................................TATGCATTATTTGCCTTGACTGAGAA...........................................................................................................................	26	1	10.00	10	2	7	0	0	1	0
............................................................................................................................................................................................AAAC------------GATGCCAGAGGAAGTGT.........................................................	21	1	8.00	8	1	2	1	0	4	0
.............................................................................................................................................................................................AAC------------GATGCCAGAGGAAGTGTGTTCC....................................................	25	1	7.00	7	0	4	0	0	3	0
.................................................................................................................................TATGCATTATTTGCCTTGACTGAGA............................................................................................................................	25	1	7.00	7	2	4	0	0	1	0
..............................................................................................................................................................................................................TGCCAGAGGAAGTGTGTTCCCTTGC...............................................	25	1	5.00	5	1	1	0	0	0	3
..................................................................................................................................................................GCTACATCTGGACATTTTCGTTCGC...........................................................................................	25	1	5.00	5	0	2	0	0	3	0
.............................................................................................................................................................................................AAC------------GATGCCAGAGGAAGTGT.........................................................	20	1	5.00	5	0	2	1	1	1	0
..............................................................................................................................................................................................................TGCCAGAGGAAGTGTGTTCC....................................................	20	1	4.00	4	0	3	1	0	0	0
..............................................................................................................................................CCTTGACTGAGAATGTGCTA....................................................................................................................	20	1	4.00	4	1	2	1	0	0	0
............................................................................................................................................................................................................GATGCCAGAGGAAGTGTGTTCCCTTGC...............................................	27	1	4.00	4	0	3	0	0	1	0
........................................................................................................................................................GAATGTGCTAGCTACATCTGGACA......................................................................................................	24	1	4.00	4	1	3	0	0	0	0
...........................................................................................................................................TTGCCTTGACTGAGAATGTGCTA....................................................................................................................	23	1	4.00	4	0	1	0	0	3	0
.............................................................................................................................................................................................................ATGCCAGAGGAAGTGTGTTCCCT..................................................	23	1	4.00	4	0	1	0	0	0	3
.................................................................................................................................TATGCATTATTTGCCTTGACTGA..............................................................................................................................	23	1	4.00	4	0	3	1	0	0	0
..............................................................................................................................................................................................................TGCCAGAGGAAGTGTGTTCCC...................................................	21	1	3.00	3	0	1	0	0	1	1
..........................................................................................................................................................ATGTGCTAGCTACATCTGGA........................................................................................................	20	1	3.00	3	1	0	2	0	0	0
............................................................................................................................................................................................................GATGCCAGAGGAAGTGTGTTCCCTT.................................................	25	1	3.00	3	1	0	1	0	1	0
......................................................................................................................................................GAGAATGTGCTAGCTACATCTGGACA......................................................................................................	26	1	3.00	3	0	3	0	0	0	0
...........................................................................................................................................................................................AAAAC------------GATGCCAGAGGAAGTGTGTTCC....................................................	27	1	3.00	3	0	1	0	0	2	0
.............................................................................................................................................................................................AAC------------GATGCCAGAGGAAGTGTGTT......................................................	23	1	3.00	3	0	0	1	0	2	0
..............................................................................................................................................................................................................TGCCAGAGGAAGTGTGTTCCCTTGCA..............................................	26	1	3.00	3	3	0	0	0	0	0
...............................................................................................................................................CTTGACTGAGAATGTGCTA....................................................................................................................	19	1	3.00	3	0	1	0	0	2	0
............................................................................................................................................................................................................GATGCCAGAGGAAGTGTGTT......................................................	20	1	3.00	3	0	1	0	0	2	0
.................................................................................................................................TATGCATTATTTGCCTTGAC.................................................................................................................................	20	1	3.00	3	0	3	0	0	0	0
.............................................................................................................................................GCCTTGACTGAGAATGTGCTA....................................................................................................................	21	1	3.00	3	0	0	0	0	3	0
.............................................................................................................................................................................................AAC------------GATGCCAGAGGAAGTGC.........................................................	20	1	3.00	3	0	3	0	0	0	0
.............................................................................................................................................GCCTTGACTGAGAATGTGCC.....................................................................................................................	20	1	2.00	2	0	2	0	0	0	0
......................................................................................................................................ATTATTTGCCTTGACTGAGAAT..........................................................................................................................	22	1	2.00	2	0	1	1	0	0	0
..................................................................................................................................................................GCTACATCTGGACATTTTCGTTCG............................................................................................	24	1	2.00	2	0	0	0	0	2	0
.........................................................................................................................................................................CTGGACATTTTCGTTCGCAAAAC------------GA........................................................................	25	1	2.00	2	0	0	0	0	0	2
.............................................................................................................................................................................................AAC------------GATGCCAGAGGAAGTGTGT.......................................................	22	1	2.00	2	0	0	0	0	2	0
...................................................................................................................................................................CTACATCTGGACATTTTCGTT..............................................................................................	21	1	2.00	2	0	2	0	0	0	0
...............................................................................................................................................................................................................GCCAGAGGAAGTGTGTTCCC...................................................	20	1	2.00	2	0	0	0	0	2	0
............................................................................................................................................................................................AAAC------------GATGCCAGAGGAAGTGTGTT......................................................	24	1	2.00	2	0	0	0	0	2	0
.................................................................................................................................TATGCATTATTTGCCTTGACTGAGAAC..........................................................................................................................	27	1	2.00	2	0	2	0	0	0	0
.................................................................................................................................................................................TTTCGTTCGCAAAAC------------GATGCCAGAGGA..............................................................	27	1	2.00	2	1	1	0	0	0	0
.................................................................................................................................TATGCATTATTTGCCTTGAA.................................................................................................................................	20	1	2.00	2	1	1	0	0	0	0
...........................................................................................................................................................................................AAAAC------------GATGCCAGAGGAAGTGC.........................................................	22	1	2.00	2	0	2	0	0	0	0
............................................................................................................................................................................................AAAC------------GATGCCAGAGGAAGTGC.........................................................	21	1	2.00	2	0	2	0	0	0	0
............................................................................................................................................TGCCTTGACTGAGAATGTGCTA....................................................................................................................	22	1	2.00	2	0	1	0	0	1	0
............................................................................................................................................TGCCTTGACTGAGAATGTGCTAGC..................................................................................................................	24	1	2.00	2	0	2	0	0	0	0
............................................................................................................................................................................................................GATGCCAGAGGAAGTGTGTTCC....................................................	22	1	2.00	2	0	0	0	0	2	0
..............................................................................................................................................................................................AC------------GATGCCAGAGGAAGTGTGTTCC....................................................	24	1	2.00	2	0	2	0	0	0	0
...................................................................................................................................................................CTACATCTGGACATTTTCGTTCGCA..........................................................................................	25	1	2.00	2	1	0	0	0	1	0
...............................................................................................................................................................................................................GCCAGAGGAAGTGTGTTCCCTTGC...............................................	24	1	2.00	2	1	1	0	0	0	0
.................................................................................................................................TATGCATTATTTGCCTTGACT................................................................................................................................	21	1	2.00	2	1	1	0	0	0	0
.............................................................................................................................................................................................................ATGCCAGAGGAAGTGTGTTCCC...................................................	22	1	2.00	2	0	0	0	0	2	0
............................................................................................................................................................GTGCTAGCTACATCTGGA........................................................................................................	18	1	2.00	2	1	1	0	0	0	0
............................................................................................................................................................................................AAAC------------GATGCCAGAGGAAGTGTGTTCC....................................................	26	1	2.00	2	0	0	0	0	2	0
............................................................................................................................................................................................................GATGCCAGAGGAAGTGTGTTCCCT..................................................	24	1	2.00	2	0	1	0	0	0	1
..................................................................................................................................ATGCATTATTTGCCTTGACTGAGAA...........................................................................................................................	25	1	2.00	2	0	2	0	0	0	0
............................................................................................................................................................GTGCTAGCTACATCTGGACA......................................................................................................	20	1	2.00	2	2	0	0	0	0	0
...............................................................................................................................................................................................................GCCAGAGGAAGTGTGTTCCCTT.................................................	22	1	2.00	2	0	0	2	0	0	0
...........................................................................................................................................................................................AAAAC------------GATGCCAGAGGAAGTGTGT.......................................................	24	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................GTTCGCAAAAC------------GATGCCAGAG................................................................	21	1	1.00	1	0	0	0	0	1	0
...................................................................................................................................................................CTACATCTGGACATTTTCGTTCGC...........................................................................................	24	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................TGCATTATTTGCCTTGACTGAGAAT..........................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................CAAAAC------------GATGCCAGAGGAAGTGTGT.......................................................	25	1	1.00	1	0	0	0	0	1	0
.............................................................................................................................................................................................AAC------------GATGCCAGAGGAAGTGTGTTCCCT..................................................	27	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................TGCATTATTTGCCTTGACC................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................TTCGCAAAAC------------GATGCCAGAGGA..............................................................	22	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................ATTTTCGTTCGCAAAAC------------GATGCCAGAGG...............................................................	28	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................GCTACATCTGGACATTTTCGTT..............................................................................................	22	1	1.00	1	0	0	1	0	0	0
....................................................................................................................................................CTGAGAATGTGCTAGCTACATCTGGACA......................................................................................................	28	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................TGCATTATTTGCCTTGACTGAGA............................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................GCCAGAGGAAGTGTGTTCCCT..................................................	21	1	1.00	1	0	0	1	0	0	0
...............................................................................................................................................CTTGACTGAGAATGTGCTAGC..................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................GCTACATCTGGACATTTTCGTTC.............................................................................................	23	1	1.00	1	0	0	0	0	1	0
........................................................................................................................................TATTTGCCTTGACTGAGAATGTGCT.....................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................ATGTGCTAGCTACATCTGGAC.......................................................................................................	21	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................AAAC------------GATGCCAGAGGAAGTGTG........................................................	22	1	1.00	1	0	0	0	0	0	1
............................................................................................................................................TGCCTTGACTGAGAATGTGCT.....................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................GCCAGAGGAAGTGTGTTCC....................................................	19	1	1.00	1	0	0	1	0	0	0
.....................................................................................................................................................................................GTTCGCAAAAC------------GATGCCAGAGGAAGTGT.........................................................	28	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................TTTGCCTTGACTGAGAATGT........................................................................................................................	20	1	1.00	1	0	0	1	0	0	0
....................................................................................................................................................................TACATCTGGACATTTTCGTT..............................................................................................	20	1	1.00	1	0	0	1	0	0	0
.....................................................................................................................................CATTATTTGCCTTGACTGAGAATG.........................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................TGCCAGAGGAAGTGTGTT......................................................	18	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................................CCTTGACTGAGAATGTGCTAGCTACATC............................................................................................................	28	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................CGTTCGCAAAAC------------GATGCCAGAG................................................................	22	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................CTGAGAATGTGCTAGCTACATCTGGA........................................................................................................	26	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................GCTACATCTGGACATTTTC.................................................................................................	19	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................GAGGAAGTGTGTTCCCTTGCA..............................................	21	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................TTTGCCTTGACTGAGAATGTGCTAGCT.................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................AAAC------------GATGCCAGAGGAAG............................................................	18	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................TTGCCTTGACTGAGAATGTGCTAG...................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................ATTATTTGCCTTGACTGAGAATGTGCTA....................................................................................................................	28	1	1.00	1	0	0	1	0	0	0
..............................................................................................................................................................................................................TGCCAGAGGAAGTGTGTTC.....................................................	19	1	1.00	1	0	0	0	0	0	1
.........................................................................................................................................ATTTGCCTTGACTGAGAATGTGCT.....................................................................................................................	24	1	1.00	1	0	0	1	0	0	0
...................................................................................................................................................................CTACATCTGGACATTTTCGC...............................................................................................	20	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................C------------GATGCCAGAGGAAGTGC.........................................................	18	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................AATGTGCTAGCTACATCTGGACAT.....................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................TCGCAAAAC------------GATGCCAGAGGAAGTG..........................................................	25	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................TTTGCCTTGACTGAGAATGTGCTAGCTA................................................................................................................	28	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................ATGCATTATTTGCCTTGACTGAGAAT..........................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................ATTATTTGCCTTGACTGAGAATG.........................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................TGTGCTAGCTACATCTGGA........................................................................................................	19	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................CTTGACTGAGAATGTGCTAGCC.................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................GCTACATCTGGACATTTTCGT...............................................................................................	21	1	1.00	1	0	0	1	0	0	0
..................................................................................................................................................GACTGAGAATGTGCTAGCTAC...............................................................................................................	21	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................CTTGACTGAGAATGTGCTAGCTACATCT...........................................................................................................	28	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................AGCTACATCTGGACATTTTCGTTC.............................................................................................	24	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................TGCATTATTTGCCTTGACT................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................TTTTCGTTCGCAAAAC------------GATGCCAGAGGA..............................................................	28	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................TGTGCTAGCTACATCTGGAC.......................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................AGCTACATCTGGACATTTTCGTTCGCA..........................................................................................	27	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................ATTTGCCTTGACTGAGAATGTGCTA....................................................................................................................	25	1	1.00	1	0	0	0	0	1	0
.............................................................................................................................................GCCTTGACTGAGAATGTGCTAGCTAC...............................................................................................................	26	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................GTGCTAGCTACATCTGGACATC....................................................................................................	22	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................GCCTTGACTGAGAATGTGCTT....................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
...........................................................................................................................................................................................AAAAC------------GATGCCAGAGGAAGTGTGTTC.....................................................	26	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................ATGTGCTAGCTACATCTGGACA......................................................................................................	22	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................TGAGAATGTGCTAGCTACATCTGGACA......................................................................................................	27	1	1.00	1	0	0	0	0	1	0
.............................................................................................................................................................................................AAC------------GATGCCAGAGGAAGTGTGTTCCCTT.................................................	28	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................AAAAC------------GATGCCAGAGGAAGTGTGTT......................................................	25	1	1.00	1	0	0	0	0	1	0
..................................................................................................................................................................GCTACATCTGGACATTTTCGTTCGCAA.........................................................................................	27	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................CTTGACTGAGAATGTGCTAGCTACATC............................................................................................................	27	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................GCTACATCTGGACATTTTCGTTCGCAAA........................................................................................	28	1	1.00	1	0	0	0	0	0	1
.................................................................................................................................................................................TTTCGTTCGCAAAAC------------GATGCCAGAGG...............................................................	26	1	1.00	1	0	0	0	0	1	0
...........................................................................................................................................TTGCCTTGACTGAGAATGTGCTAGCT.................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................CTTGACTGAGAATGTGCTAG...................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
...........................................................................................................................................................................................AAAAC------------GATGCCAGAGGAAGC...........................................................	20	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................GACTGAGAATGTGCTAGCTACATCT...........................................................................................................	25	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................TACATCTGGACATTTTCGT...............................................................................................	19	1	1.00	1	0	0	1	0	0	0
....................................................................................................................................................................................................................AGGAAGTGTGTTCCCTTGC...............................................	19	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................ATTTGCCTTGACTGAGAAT..........................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................ACATCTGGACATTTTCGTT..............................................................................................	19	1	1.00	1	0	0	1	0	0	0
..............................................................................................................................................................................................................TGCCAGAGGAAGTGTGTTCCCTTG................................................	24	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................ATTTGCCTTGACTGAGAA...........................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................TTTGCCTTGACTGAGAATG.........................................................................................................................	19	1	1.00	1	0	0	1	0	0	0
.............................................................................................................................................GCCTTGACTGAGAATGTGCTAGCT.................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................TGCCAGAGGAAGTGTGTTCCCTT.................................................	23	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................TATTTGCCTTGACTGAGAATGTG.......................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................CATCTGGACATTTTCGTTCGCAAAAC------------GAT.......................................................................	29	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................CATTATTTGCCTTGACTGAGAATGTGCT.....................................................................................................................	28	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................CAAAAC------------GATGCCAGAGGAAGTGT.........................................................	23	1	1.00	1	0	0	0	0	1	0
...............................................................................................................................................................................................C------------GATGCCAGAGGAAGTGTGTTCCCTTGC...............................................	28	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................AAAAC------------GATGCCAGAGGAAGT...........................................................	20	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................................GAAGTGTGTTCCCTTGCAAC--------------------------------------------	20	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................AAAC------------GATGCCAGAGGAAGT...........................................................	19	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................TTGACTGAGAATGTGCTAGC..................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................TATTTGCCTTGACTGAGAATGT........................................................................................................................	22	1	1.00	1	0	0	1	0	0	0
....................................................................................................................................GCATTATTTGCCTTGACTGAGAAT..........................................................................................................................	24	1	1.00	1	0	0	1	0	0	0
..................................................................................................................................................................................................................AGAGGAAGTGTGTTCCCTTGC...............................................	21	1	1.00	1	0	0	0	0	0	1
.........................................................................................................................................ATTTGCCTTGACTGAGAATGTGCTAG...................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................ACATCTGGACATTTTCGTTCGCA..........................................................................................	23	1	1.00	1	1	0	0	0	0	0

droBip1

TACCCAGGGATCGTTACACACGCGAGAGCCGTG-GTTTCGCATTTGTGCGGTGAGTTTCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TACCGCGGGATCGCTACACACGTGAGAGTCGTG-GATTCGCCTTTGTGCGGTAAGTCTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TACCTAGAGATCGTTACACACGCGAGAGCCGCG-GATTCGCCTTCGTGCGGTAAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TACCCAGGGATCGCTACACGCGCGAAAGCCGCG-GTTTTGCCTTCGTTCGGTAAGTATCCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TACCCAGAGATCGCTACACGCGCGAGAGCCGCG-GTTTTGCCTTTGTTCGGTAAGTATTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TACCCCGGGATCGCTACACGCGCGAGAGCCGTG-GATTCGCCTTTGTGCGGTAAGTAGTCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TACCCCGGGATCGCTACACCCGCGAGAGCCGCG-GATTCGCCTTTGTGCGGTAAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TACCCAGGGATCGCTACACACGCGAGAGTCGTG-GATTCGCTTTCGTGCGGTAAGTAATCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

TACCCAGGGATCGCTACACACGTGAGAGCCGCG-GATTCGCATTTGTTCGGTAAGCATTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..................CACGTGAGAGCCGCG-GATTCGCA............................................................................................................................................................................................................................................	23	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................ACACGTGAGAGCCGCG-GATTCGC.............................................................................................................................................................................................................................................	23	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................TGAGAGCCGCG-GATTCGCATTTGTT......................................................................................................................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................ACGTGAGAGCCGCG-GATTCGCATT..........................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............CTACACACGTGAGAGCCGCG-G...................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................CACGTGAGAGCCGCG-GATTCGCATT..........................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
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TACCCAGGGATCGCTACAC...................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................AGCCGCG-GATTCGCATTTGTTC.....................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............GCTACACACGTGAGAGCCGCG-....................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........ATCGCTACACACGTGAGAGCC........................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............ACACACGTGAGAGCCGCG-GATT................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................CGTGAGAGCCGCG-GATTCGCATTTGTT......................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...CCAGGGATCGCTACACACGTGAGA...........................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TACCCAGGGATCGCTACACACGTGAGA...........................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TACCCAGGGATCGCTACACACGCGAGAGCCGCG-GATTCGCATTTGTTCGGTAAGCATTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.........................................ATTTGTTCGGTAAGCATT...........................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............TACACACGCGAGAGCCGCG-....................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................CGCATTTGTTCGGTAAGC..............................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................ATTCGCATTTGTTCGGTAAGCATT...........................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

TACCCAGGGATCGCTACACACGCGAGAGCCGCG-GATTCGCATTTGTTCGGTAAGCATTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.................ACACGCGAGAGCCGCG-GA..................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0

droYak3

TACCCAGGGATCGCTACACACGCGAGAGCCGCG-GATTCGCCTTTGTTCGGTAAGCATTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...........CGCTACACACGCGAGAGCCGCG-....................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................GCGAGAGCCGCG-GATTCGCCTG..........................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...............ACACACGCGAGAGCCGCG-GATTCGCC............................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.......................GAGAGCCGCG-GATTCGCCTTTGTT......................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

TACCCAGGGATCGCTACACACGTGAGAGCCGCG-GATTCGCCTTTGTTCGGTAAGCATTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dpe_560

scaffold_1:4601243-4601393 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads