ID:

dpe_549

 Coordinate:

scaffold_1:4178194-4178466 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-33.4 -33.4 -33.4

Flybase annnotation

CDS [Dper\GL18808-cds]; exon [dper_GLEANR_20947:15]; exon [dper_GLEANR_20947:14]; CDS [Dper\GL18808-cds]; intron [Dper\GL18808-in]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GCTACGAGGGCGACAATCTTGGTGTGCCGCTACACATGTTGTCGAGTGAGGTAAGTCCCAGTCCAATTCTAAGCCCTAAAGTGGTTCCCGTTCAAGAACTTGAATTGTCCTTAAAAAAAGAAAAAAGAAACTCTGTTTTTTATTTGTTGATTTGTAAGCGCACCAAAAGTAAAGTAAGTGAAACCAATTGGCAGTCCAAAATTGAATGACAAGTGTACTATAAATGGAGACCCACTGAAACAAAAATTGAAACAAAATTTATTATGATTTATATTATTTTTAATTTATTTTATTTCCTTTCTTTTCCATTATGGCATATCTAGCTTTTGGATAATACTACATTATCAACCTCTTCTATGCAGGCCGCCGCACC
**************************************************....(((.((((......((..(((......(((((...........((((....(((.((((....((.(((.(((((((...))))))).))).))......)))).)))....))))...........)))))...)))))......))))...)))..((((.((((((.((((((......((((.(((((((((((...........(((((....))))))))))))...)))).))))......)))))))))))).))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M021
embryo
 V057
head
 M042
female body
 V042
embryo
 V111
male body
...........................................................................................TCAAGAACTTGAATTGTCC....................................................................................................................................................................................................................................................................... 19 0 1 2.00 2 2 0 0 0 0
..............GATCTTGGTGTGCCGCTGCAC.................................................................................................................................................................................................................................................................................................................................................. 21 2 1 1.00 1 0 0 1 0 0
..................................................................................................................................................................................................TCCAAAAGTGAATGAGACGTG.............................................................................................................................................................. 21 3 1 1.00 1 0 0 0 0 1
............ACAATCTTGGTGTGCCGCTACAC.................................................................................................................................................................................................................................................................................................................................................. 23 0 1 1.00 1 0 0 1 0 0
................................CACATGTTGCCGAGCGTGGTA................................................................................................................................................................................................................................................................................................................................ 21 3 1 1.00 1 0 0 0 1 0
..............................TACACATGTTGTCGAGTGAG................................................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0
..............................TACACATGTTGTCGAGTGCG................................................................................................................................................................................................................................................................................................................................... 20 1 1 1.00 1 0 1 0 0 0
..............................TACACATGTTGTCGAGTG..................................................................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................................TCTAGGTAGGCCGCCGCAAC 20 3 2 0.50 1 0 0 0 1 0
...ACGAGCGCGACACTCATGG............................................................................................................................................................................................................................................................................................................................................................... 19 3 13 0.08 1 0 1 0 0 0
.....................................................................................................................................................................................AACCAATTGGCCTTCCAAAC............................................................................................................................................................................ 20 3 16 0.06 1 0 0 0 1 0
...............................................................................................................................................................................................................................ACTGAGACCCACTGAAAC.................................................................................................................................... 18 2 16 0.06 1 0 1 0 0 0

Anti-sense strand reads

CGATGCTCCCGCTGTTAGAACCACACGGCGATGTGTACAACAGCTCACTCCATTCAGGGTCAGGTTAAGATTCGGGATTTCACCAAGGGCAAGTTCTTGAACTTAACAGGAATTTTTTTCTTTTTTCTTTGAGACAAAAAATAAACAACTAAACATTCGCGTGGTTTTCATTTCATTCACTTTGGTTAACCGTCAGGTTTTAACTTACTGTTCACATGATATTTACCTCTGGGTGACTTTGTTTTTAACTTTGTTTTAAATAATACTAAATATAATAAAAATTAAATAAAATAAAGGAAAGAAAAGGTAATACCGTATAGATCGAAAACCTATTATGATGTAATAGTTGGAGAAGATACGTCCGGCGGCGTGG
**************************************************....(((.((((......((..(((......(((((...........((((....(((.((((....((.(((.(((((((...))))))).))).))......)))).)))....))))...........)))))...)))))......))))...)))..((((.((((((.((((((......((((.(((((((((((...........(((((....))))))))))))...)))).))))......)))))))))))).))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total V057
head
 V111
male body
...........................GCGATGGGTACGAAAGCTC....................................................................................................................................................................................................................................................................................................................................... 19 3 11 0.09 1 0 1
.....................CAAACAGCGATGAGTACAA............................................................................................................................................................................................................................................................................................................................................. 19 3 20 0.05 1 1 0
.........................................................................................................................................................................................................................................................................................................................................................GTTGGCGAAGATGCGTACGG........ 20 3 20 0.05 1 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_1:4178144-4178516 - dpe_549 GCTACGAGGGCGACAATCTTGGTGTGCCGCTACACATGTTGTCGAGTGAGGTAAGTCCC------AGT--CCAATT-----------CTAA---G---CCC-TA-----------AAGTGG-T-------------TCCCGTT--C----A----AGAA--CTTG-----------------AATTGTCCTTAAA---------AAA-A--GAAAAAA-GA-------AACTC-----------TGTT-------TTTTATTTGTTGA----------TTTGTAAGCGCACCAAAAGTA-------AAGTAAGTGA------------------AACCAATTGGCAGTCCAA--------------------------------------------------------------------AATTGAATGACAAGT---------------------------GTACTATAAATGGAGA----------CCCACTGAAACAAAAA-------TTG----AAACAAAATTTATT---ATGATTTA-TAT------------TAT-------------------------------T-----TTTAA--------TTT-------ATT-------------TTATTTCCTTT--C-----TT--TTC---CATTATGGCAT-------A--TCTAGCTTTTGGATAATACTACATTATCAACCTCTTCTATGCAGGCCGCCGCACC
dp5 4_group3:2687321-2687694 - GCTACGAGGGCGACAATCTTGGTGTGCCGCTACACATGTTGTCGAGTGAGGTAAGTCCC------AGT--CCAATT-----------CCAA---G---CCC-TA-----------AATTGG-T-------------TCCCGTT--C----A----AGAA--CTTG-----------------AATTGTCCTTAAA---------AAAAA--GAAAAAA-GA-------AACTC-----------TGTT-------TTTTATTTGTTGA----------TTTGTAAGCGCACCAAAAGTA-------AAGTAAGTGA------------------AACCAATTGGCAGTCCAA--------------------------------------------------------------------AATTGAATGACAAGT---------------------------GTACTATAAATGGAGA----------CCCACTGAAACAAAAA-------TTG----AAACAAAATTGATT---ATGATTTA-TAT------------TAT-------------------------------T-----TTTAA--------TTT-------ATT-------------TTATTTCCTTT--C-----TT--TTC---CATTATGGCAT-------A--TCTAGCTTTTGGATAATACTACATTATCAACCTCTTCTATGCAGGCCGCCGCACC
droWil2 scf2_1100000004585:1075809-1076242 - GCTATGAGTGCGATAATCTGGGTGTCCCATTGCTAATACTCTCCAATGAGGTAAGTCATGTCA--A----CC------AAACTCATTCATTTTAG---CC---------------AAGTTG-T-------------TACCGTT--C----AAAGAAA-ATCCATGAAATTCTTTCAAAAGAATTTTGTCCTTAAA---------AAA-------------A-------AAAAC------AATTG------TAA--T---TTTTGTTGAAATATTTTTAATTTAAAAAGCACCAAAAAAAAAGCAAAAAGTAAGTGA------------------A---AATTGGCATTAAAA-------------------------------------------T----------------TATGAAAA-----------------------A-AA-AAAG-----------------------ATA----------ACTAC------AAAATTTTTGTATAA----ATACAAAATATATTAAT-------G-TAT---CATTTATTTAATTTATTTTTTAATTTTTGTGTAATATTTGAT-------TTTTA--------TT---------GTTTGTTTTATTTATTGTTTTTTATT--CTT--------------------TCAA-------TCTTATAGCTTTTGGATAATACTACATTATCAACCTCTTCTATGCAGGCCGCCGCACC
droVir3 scaffold_12963:6394095-6394516 - dvi_10634 GCTACGAGGGCGACAATCTGGGCGTGCCGCTGCAAATGTTGTCGAATGAGGTAAGTGCA------AGG----------------------------------------ATCT-T----GAG-TATTCAAAATGTATTGCAATT--A-----------AA--CGAG---------------A-ATTTGTCCCGAAAATCCAAAAAAAA-----TAAAAA-GA-------AAAAC------AATT-------TGATTTTTAATT---TAA----------TT--TGAGCGCACCA-------------AAGTAAGTGAACTTATAATATGAAAAAAAGAAAATTGGCTGTAAAA-----ATATTTATATCAATACTTATATTATAAATACAATTATTTATTTAGAGCGTGA---TGCGA---ATTTGAA---------------------------------TTG----AT-------------------------------------------AAATGCAAAAAGAA----TT---TTTA-----TTT------------TATTTAT---------------------------TTTGAATTTAA--------TTT-------AATTTCTT--------TTATTTCCTTT--C-----TA--TTA-TACTTTATGGCAT-------A--TCTAGCTTTTGGATAATACTACATTATCAACCTCTTCTATGCAGGCCGCCGCACC
droMoj3 scaffold_6500:25538612-25538969 - GCTACGAGGGCGACAACCTGGGCGTGCCGCTCCAAATGTTGTCAAATGAGGTAAGTGCA------ACT--CCT-----------------------------AACTC-----------CAG-T-------------TCCGATT--C----A----A--A--TTCG-----------------ATTTGTCCCAAGA---------AAA-----AAAAAA-GA-------AGTTT--AAATA-------T-------TTTGATT----------------TTTGTAAGCGCACCA-------------AAGTAAGTGAAAT----ATTTAACAAACAAAAAATTGGCT--CCAA------------------------------------------TC---------G-AAAAGTGTGAAAA-----------------------A----ATTGATTGAAAATTGTA--ACAAATGTAAA----------C-----------------------GA----AAACAGATT---TT---ATTA-----TTT------------TAT-------------------------------T------TTAATTTAA---TT---------TT-------------TGTTTTTCTTTTTC---C-TTTATAT---TTGTATGGCAA-------T--TCTAGCTTTTGGATAATACTACATTATCAACCTCTTCTATGCAGGCCGCCGCACC
droGri2 scaffold_15252:9622183-9622576 - GCTATGAGGGCGACAATTTGGGTGTACCGCTGCACATGTTGTCAAGTGAGGTAAGTGCA------ACA----------------------------------------AACT------TGGATATTCAAAAGTTATCACAATT--A----A----AAT---CGAC---------------A-ATTTGTCCCGAAACTCCCA-------------ATAA-AA-------AGTTC-----------AA-T-------TTTGATTT---------------TTTGTGAGCGCACCA-------------AAGTAAGTGA------------------ACTAATTTGGCTGTAAACAAAATATACTTTTATC--------------------TACTATTTGAATAGTGCGTGA----------------------------------------TTAATTCAAAATTG----AC-------------------------------------------AA----ATACAAAATATAAAAATTTTA-----TTTTAACAT------TAT-----------------TCAAATACTTGATTT-----TTTAATTTTATTATTT--------------------------TTTCCATT--CTTTC-TTTTTTTTTATATTATGCCAT-------A--TCTAGCTTTTGGATAATACTACATTATCAACCTCTTCTATGCAGGCCGCCGCACC
droAna3 scaffold_12916:9960927-9961237 - GATACGAGGGCGATAACCTTGGCGTCCCCCTGCACCTGTTGTCTAGCGAGGTAAGTCCTGA----A-T--CA--------------------------------------CT------TGC-A-TT------AAATT-------------A----CA-AT-CCT---------TGAG-----AATTGTCCTGAAA---------A---------------------------T------AT----A---TTGA--TTTTATTTGTTGA----------TTTGTGAGCGCACCAG------------AAGTAAGTGA------------------AACCAATCGGCAGATCAA-------------------------------------------T---------AAGAAAATGTGAAAA-----------------------A----TTCG----T---------------------AAA---------CT------C-------------------------------TT---ATGATTTC-TAT------------TAT-------------------------------T-----TATAA--------TTT-------ATTTT-----------CGTTTTTCCTT--C-----TG--TTT---CTTTGTCGCAA-------T--TCTAGCTTTTGGATAATACTACATTATCAACCTCTTCTATGCAGGCCGCCGCACC
droBip1 scf7180000396580:1067242-1067553 + GCTACGAGGGCGATAACCTTGGCGTGCCCCTGCACCTGTTGTCTAGTGAGGTAAGTCCTGA----ATT--G---------------------------------------CT------TGCTA-TT------TTGTC-------------A----CA-AT-CCT---------TGAG-----AATTGTCCTGAAA---------AC---------------------------------AT----A---TTGA--TTTTATTTGTTGA----------TTTGTGAGCGCACCAA------------AAGTAAGTGA------------------AACCAATTGGCAGATCAA-------------------------------------------T---------AAGAAAATGTGAAAA-----------------------A----TTCG----T---------------------AAT---------CT------C-------------------------------TT---ATGATTTG-TAT------------TAT-------------------------------T-----TATAA--------TTT-------ATTTT-----------CGTTTTTCCTT--C-----TG--TTT---CTTTGTCGCAA-------T--TCTAGCTTTTGGATAATACTACATTATCAACCTCTTCTATGCAGGCCGCCGCACC
droKik1 scf7180000302643:664184-664494 - GCTACGAGGGCGACTCTCTTGGTGTGCCGCTGCACATGTTGTCGAGCGAGGTAAGTGTT-----------TCAATT-----------C----------------------CCTGGAGGTGA-T-------------TCC--TT--C----A-------------------------------GATTGTCCTGAAA---------AAG-------------------------T------AT----A----TTA--TTTGATTTGTTGA----------TTTGTGAGCGCACCCG------------AAGTAAGTGA------------------ATCCAATTGGA-------------------------------------------------------------------------------------CAAGTGACGATGAG-AA-ATTG----------------TTTACGGAGAAA----------CC------C-------------------------------TT---TTGATTTCGTTT------------TAT-------------------------------T-----TATAA--------TTT-------ATTTT-----------CGTTTTTCTTTT-C---C-TTC-TTT---CTTTGTGGCAA-------T--TCTAGCTTTTGGATAATACTACATTATCAACCTCTTCCATGCAGGCCGCCGCACC
droFic1 scf7180000453842:1043429-1043763 - GTTACGAGGGCGACAATCTTGGCGTGCCACTCCATATGCTGTCTAGTGAGGTGAGTGAA------AGT--CCTTTT-----------TG--GTAA---TC---------------TAGTGC-T-------------TCCTGTT--C----GAA-AGAAA--CAAG-----------------AATTGTCCTC--------------------------------------CTCAAGAATATT--------TGA--TTTTATTTGTTGA----------TTTGTGAGCGCACCAG------------AAGTAAGTGA------------------AACCAATTGGCAGTCGAA-------------------------------------------C---------GAGAAAATGTGGAAA-----------------------A-T--CTTG----A---------------------AAACAACAACCCCC------C-------------------------------TT---TTGATTTG-TAT------------TAT-------------------------------T-----TATAA--------TTT-------ATT-------------CGTTTTTCTTT--C-----TT--TTT---CTTTGTGGCAA-------A--TCTAGCTTTTGGATAATACTACATTATCAACCTCTTCTATGCAGGCCGCCGCACC
droEle1 scf7180000491273:12560-12909 - GCTACGAGGGCGACAATCTTGGCGTGCCACTGCACATGTTGTCGAGTGAGGTAAGTGTC---CACAGTGACC------ACA----TTTA--GTAA---TTT-AATAG---CG------TGG-T-------------TCCTGTTCTC--GAAAG-AAAAA--CATG-----------------AATTGTCCTAAAA---------AAA----------------------AAAT------ATT--------TAA--TTTTATTTGTTGA----------TTTGTGAGCGCACCAG------------AAGTAAGTGA-----------------CAACCAATTGGCAATCGAA-------------------------------------------C---------GAGAAAATGTGGAAA-----------------------A-T--CTTG----A---------------------AAA---------CC------C-------------------------------TT---ATGATTTG-TAT------------TAT-------------------------------T-----TATAA--------TTTATAATTTATT-------------TATTTTTCTAT--C-----TT--TTT---CTTTATGGCAA-------A--TATAGCTTTTGGATAATACTACATTATCAACCTCTTCTATGCAGGCCGCCGCACC
droRho1 scf7180000779577:10984-11315 - GTTTCGAGGGCGACAATCTTGGCGTGCCACTGCACATGTTGTCGAGTGAGGTGAGTCAC------ATT--CCATTT-----------CATT---AATACACAAAAAA---C------GTAA-T-------------TCCTGTT--C----AAA-AAAAA--CATG-----------------AATTGTCCTGAGA---------A--------------------------AT------ATT--------TAA--TTTTATTTGTTGA----------TTTGTGAGCGCACCAG------------AAGTAAGTGA------------------AACCAATTGGCATTTGAA-------------------------------------------C---------GAGAAAATTTGGAAA-----------------------A-AAACTTG----A---------------------AAA----------C------C-------------------------------TT---ATGATTTC-TAT------------TAT-------------------------------T-----TATAA--------TTT-------ATT-------------TGTTTTTCTAT--C-----TT--TTT---CTTTATGGCAT-------A--TATAGCTTTTGGATAATACTACATTATCAACCTCTTCTATGCAGGCCGCCGCACC
droBia1 scf7180000302261:643817-644137 + GTTACGAATGCGATAATCTTGGCGTGCCACTGCACATGTTGTCGAGTGAGGTGAGTCCA------AGA--CCT--T-CTA--------ATA---A---TCC-CATAC---CC------TGGTT-------------TCCAGTT--A----A----AA-A--ATGG-----------------ATTTGTCCTGAAA---------AA----------------------------------T----A----TGA--TTTTATTTGTTGA----------TTTGTGAGCGCACCAG------------AAGTAAGTGA------------------AACCAATTGGCAGTCGAA-------------------------------------------C---------GAGAAAATATTAAAA-----------------------ATAAACCTG----A---------------------AA-----------C------C-------------------------------TT---TTTATTTC-TTT------------TAT-------------------------------T-----TATAA--------TTT-------ATT-------------TAT-TTTCTTT--C-----TT--TTT---CTTTGTGGCA--------A--TCTAGCTTTTGGATAATACTACATTATCAACCTCTTCTATGCAGGCCGCCGCACC
droTak1 scf7180000415704:325325-325658 - GCTATGAAGGCGATAATCTTGGCGTGCCACTGCACATGTTGTCGAGTGAGGTGAGTCTT-----------TCTTTTCCTA--------GTT---A---CTC-TGTTC---AT------TGGTT-------------TCCTGTT--TACA-AAA-AAAAA--CTGG-----------------ATTTGTCCTAAAA---------A------------------------------------------TCTTGA---TTTATTTGTTGA----------TTTGTGAGCGCACCAA------------AAGTAAGTGA-------------------ACCAATTGGCAGTCGAA-------------------------------------------C---------GAGAAAATATTGAAA-----------------------A-----TTA----A---------------------AAA-------CCCC------C-------------------------------TT---ATTATTTG-AAT------------TAT-------------------------------T-----TATAA--------TTT-------TTG-------------TATTTTTCTTT--C-----TT--TTT---CTTTATGGCAAAACAAAAA--TCTAGCTTTTGGATAATACTACATTATCAACCTCTTCTATGCAGGCCGCCGCACC
droEug1 scf7180000409005:1091388-1091726 + GCTACGAGGGCGACAATCTTGGCGTGCCACTGCACATGTTGTCGAGTGAGGTGAGTCGA------AGT--CTT--T-CAA--------ATT---A---CTT-TACAA---CT------TAGTT-------------TCCTGTT--A----A---AAAAA--CATG-----------------ATTTGTCCTGAAA---------AAA-------A-----C-------AAAAC------ATT--------TAA--TTTGATTTATTGA----------TTTGTGAGCGCACCAG------------AAGTAAGTGA------------------AACCAATTGGCAGTCGAA-------------------------------------------C---------GAGAAAATGTGAAAA-----------------------A-GAACTTA----T---------------------AA----------CC------C-------------------------------TT---ATGATTTG-TAT------------TAT-------------------------------T-----TTTAA--------TTT-------ATT-------------TATTTTTCTTC--CTTTTCTT--TTT---CTTTATGGCAA-------A--TATAGCTTTTGGATAATACTACATTATCAACCTCTTCTATGCAGGCCGCCGCACC
dm3 chr2L:5204543-5204885 + GCTACGAGGGCGACAATCTCGGCGTGCCATTGCACATGTTGTCTAGTGAGGTAAGTCCA------AGTGTCCC-----ATA----TTCATT---G---CCC-AACAC---CT------TGGTT-------------TCCTGTT--C----A---AAAAA--CATG-----------------ATTTGTCCAAAAA---------AAA-----------TGG-------AAAAT------AATTAAATT-------TTTGATTTGTTGA----------TTTGTGAGCGCACCAG------------AAGTAAGTGA------------------AACCCATTGGCAGTCTAA-------------------------------------------C---------GAAAAAATATGAAAA-----------------------G-A--ATTG----A---------------------AA------------------C-------------------------------TT---ATGATTTC-TAT------------TAT-------------------------------T-----TTTAA--------TTT-------ATT-------------TATTTTTCTTT--CTTTC-TTT-TTT---CTGTATGGCAA-------A--CATAGCTTTTGGATAATACTACATTATCAACCTCTTCCATGCAGGCCGCCGCACC
droSim2 2l:5009360-5009703 + dsi_18393 GCTACGAGGGCGACAATCTCGGCGTGCCACTGCACATGTTGTCTAGTGAGGTGAGTCCA------AGTGTCCCG-----------TCCATT---G---CCC-AACAC---CT------TGGTT-------------TCCTGTT--C----A----AAAA--CATG-----------------ATTTGTCCAAAAA---------AAA-----AA-AA-TGG-------AAAAT------AATTAAATT-------TTTGATTTGTTGA----------TTTGTGAGCGCACCAG------------AAGTAAGTGA------------------AACCAATTGGCAGTCGAA-------------------------------------------C---------GAGAAAATATGAAAA-----------------------G-A--ATTG----A---------------------AA------------------C-------------------------------TT---ATTATTTA-TAT------------TAT-------------------------------T-----TATAA--------TTT-------ATT-------------TGTTTTTCTTT--CTTTC-TTT-TTT---CTGTATTGCAA-------A--TATAGCTTTTGGATAATACTACATTATCAACCTCTTCCATGCAGGCCGCCGCACC
droSec2 scaffold_5:3285667-3286009 + GTTACGAGGGCGACAATCTCGGCGTGCCACTGCACATGTTGTCTAGTGAGGTGAGTCCA------AGTGTCCCG-----------TCCATT---G---CCC-AACAA---CT------TGGTT-------------TCCTGTT--C----A----AAAA--CATG-----------------ATTTGTCCCAAAA---------AAA--------AA-TGG-------AAAAT------AATTAAATT-------TTTGATTTGTTGA----------TTTGTGAGCGCACCAG------------AAGTAAGTGA------------------AACCAATTGGCAGTCGAA-------------------------------------------C---------GAGAAAATATGAAAA-----------------------G-A--ATTG----A---------------------T------------C------C-------------------------------TT---ATGATTTC-TAT------------TAT-------------------------------T-----TATAA--------TTT-------ATT-------------TGTTTTCCTTT--CTTTC-TTTTTTT---CTGTATGGCAA-------A--TATAGCTTTTGGATAATACTACATTATCAACCTCTTCCATGCAGGCCGCCGCACC
droYak3 2L:10322728-10323068 - GTTACGAGGGCGACAACCTCGGCGTGCCACTGCACATGTTGTCCAGTGAGGTGAGTCCA------TGT--C---------------------------------------CT------TGGTT-------------TCCTGTT--C----TG--AAAAA--CATG-----------------ATTTGTCCCAAA---CCAAAAAAAA--AAAAA-AA-TATTGAAAAAAAAAT------AATTACATT-------TTTGATTTGTTGA----------TTTGTGAGCGCACCAG------------AAGTAAGTGA------------------AACCAATTGGCAGTCAAA-------------------------------------------C---------GAGAAAATATGAAAA-----------------------C-A--AACG----A---------------------AA------------------C-------------------------------TT---ATGATTTG-TAT------------TAT-------------------------------T-----TATAA--------TTT-------ATT-------------TGTGTTTCTTT--CTTTC-TT--TTT---CTGTATGGCAA-------A--TATAGCTTTTGGATAATACTACATTATCAACCTCTTCTATGCAGGCCGCCGCACC
droEre2 scaffold_4929:5282520-5282861 + GTTACGAGGGCGACAATCTCGGCGTGCCACTGCACATGTTGTCCAGTGAGGTGAGTCCA------AGT--CCTTTC-----------CATT---G---CCC-AACACCATCT------TGGTT-------------TCCTGTT--C----A----AAAA--CATG-----------------ATTTGTCCCAAAA---------AAA---AAAA-AA-TAT-------AAAAT------AA------T-------TTTGATTTGTTGA----------TTTGTGAGCGCACCAG------------AAGTAAGTGA------------------AACCAATTGGCAGTCGAA-------------------------------------------C---------GAGAAAATATGAAAA-----------------------C-C--ATTG----A---------------------GA------------------C-------------------------------TT---ATGATTTT-TAT------------TAT-------------------------------T-----TATAA--------TTTATAATTTATT-------------TGTTTTTCTTT--C-----C---TTT---CTGTATGGCAA-------A--TATAGCTTTTGGATAATACTACATTATCAACCTCTTCTATGCAGGCCGCCGCACC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
GCTACGAGGGCGACAATCTTGGTGTGCCGCTACACATGTTGTCGAGTGAGGTAAGTCCC------AGT--CCAATT-----------CTAA---G---CCC-TA-----------AAGTGG-T-------------TCCCGTT--C----A----AGAA--CTTG-----------------AATTGTCCTTAAA---------AAA-A--GAAAAAA-GA-------AACTC-----------TGTT-------TTTTATTTGTTGA----------TTTGTAAGCGCACCAAAAGTA-------AAGTAAGTGA------------------AACCAATTGGCAGTCCAA--------------------------------------------------------------------AATTGAATGACAAGT---------------------------GTACTATAAATGGAGA----------CCCACTGAAACAAAAA-------TTG----AAACAAAATTTATT---ATGATTTA-TAT------------TAT-------------------------------T-----TTTAA--------TTT-------ATT-------------TTATTTCCTTT--C-----TT--TTC---CATTATGGCAT-------A--TCTAGCTTTTGGATAATACTACATTATCAACCTCTTCTATGCAGGCCGCCGCACCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..............................................................................................................................................T--C----A----AGAA--CTTG-----------------AATTGTCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002200000
............ACAATCTTGGTGTGCCGCTACAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
..............................TACACATGTTGTCGAGTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
..............................TACACATGTTGTCGAGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
dp5
GCTACGAGGGCGACAATCTTGGTGTGCCGCTACACATGTTGTCGAGTGAGGTAAGTCCC------AGT--CCAATT-----------CCAA---G---CCC-TA-----------AATTGG-T-------------TCCCGTT--C----A----AGAA--CTTG-----------------AATTGTCCTTAAA---------AAAAA--GAAAAAA-GA-------AACTC-----------TGTT-------TTTTATTTGTTGA----------TTTGTAAGCGCACCAAAAGTA-------AAGTAAGTGA------------------AACCAATTGGCAGTCCAA--------------------------------------------------------------------AATTGAATGACAAGT---------------------------GTACTATAAATGGAGA----------CCCACTGAAACAAAAA-------TTG----AAACAAAATTGATT---ATGATTTA-TAT------------TAT-------------------------------T-----TTTAA--------TTT-------ATT-------------TTATTTCCTTT--C-----TT--TTC---CATTATGGCAT-------A--TCTAGCTTTTGGATAATACTACATTATCAACCTCTTCTATGCAGGCCGCCGCACCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................CACATGTTGTCGAGTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
...........GACAATCTTGGTGTGCCGCTAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010000000
.......................GTGCCGCTACACATGTTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
....................................................................................................................................................................................................................................................................................................................GTAAGTGA------------------AACCAATTGGC..............................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTATGCAGGCCGCCGC...1911.0010100000000
...........GACAATCTTGGTGTGCCGCTACACAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTACATTATCAACCTCTTCT.................2311.0010010000000
.............................CTACACATGTTGTCGAGTGAGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
...............................ACACATGTTGTCGAGTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
..............AATCTTGGTGTGCCGCTACACATGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAACCTCTTCTATGCAGGCCGCC.....2511.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCTCTTCTATGCAGGCCGCCGC...2511.0010010000000
droWil2
GCTATGAGTGCGATAATCTGGGTGTCCCATTGCTAATACTCTCCAATGAGGTAAGTCATGTCA--A----CC------AAACTCATTCATTTTAG---CC---------------AAGTTG-T-------------TACCGTT--C----AAAGAAA-ATCCATGAAATTCTTTCAAAAGAATTTTGTCCTTAAA---------AAA-------------A-------AAAAC------AATTG------TAA--T---TTTTGTTGAAATATTTTTAATTTAAAAAGCACCAAAAAAAAAGCAAAAAGTAAGTGA------------------A---AATTGGCATTAAAA-------------------------------------------T----------------TATGAAAA-----------------------A-AA-AAAG-----------------------ATA----------ACTAC------AAAATTTTTGTATAA----ATACAAAATATATTAAT-------G-TAT---CATTTATTTAATTTATTTTTTAATTTTTGTGTAATATTTGAT-------TTTTA--------TT---------GTTTGTTTTATTTATTGTTTTTTATT--CTT--------------------TCAA-------TCTTATAGCTTTTGGATAATACTACATTATCAACCTCTTCTATGCAGGCCGCCGCACCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.CTATGAGTGCGATAATCTGGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.00300120
..TATGAGTGCGATAATCTGGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTATGCAGGCCGCCGCACC2211.00100010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATACTACATTATCAACCTCTT...................2411.00101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAACCTCTTCTATGCAGGC.........2111.00101000
..............AATCTGGGTGTCCCATTGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
............................ATTGCTAATACTCTCCAATGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100001
...............ATCTGGGTGTCCCATTGCTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTATCAACCTCTTCTATGCAGGCCGCC.....2911.00110000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTTGGATAATACTACATT..............................2111.00101000
.......................GTCCCATTGCTAATACTCTCCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCAACCTCTTCTATGCAG...........2011.00101000
.CTATGAGTGCGATAATCTGGGTGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100
..............AATCTGGGTGTCCCATTGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
.......................GTCCCATTGCTAATACTCTCCAATGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100
droVir3
GCTACGAGGGCGACAATCTGGGCGTGCCGCTGCAAATGTTGTCGAATGAGGTAAGTGCA------AGG----------------------------------------ATCT-T----GAG-TATTCAAAATGTATTGCAATT--A-----------AA--CGAG---------------A-ATTTGTCCCGAAAATCCAAAAAAAA-----TAAAAA-GA-------AAAAC------AATT-------TGATTTTTAATT---TAA----------TT--TGAGCGCACCA-------------AAGTAAGTGAACTTATAATATGAAAAAAAGAAAATTGGCTGTAAAA-----ATATTTATATCAATACTTATATTATAAATACAATTATTTATTTAGAGCGTGA---TGCGA---ATTTGAA---------------------------------TTG----AT-------------------------------------------AAATGCAAAAAGAA----TT---TTTA-----TTT------------TATTTAT---------------------------TTTGAATTTAA--------TTT-------AATTTCTT--------TTATTTCCTTT--C-----TA--TTA-TACTTTATGGCAT-------A--TCTAGCTTTTGGATAATACTACATTATCAACCTCTTCTATGCAGGCCGCCGCACCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........GACAATCTGGGCGTGCCGCTGCAAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000010000000000000000000000000000000
..............AATCTGGGCGTGCCGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
...........GACAATCTGGGCGTGCCGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000100000000000000000000000000000000000000000
.......................GTGCCGCTGCAAATGTTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
....CGAGGGCGACAATCTGGGCGTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGATAATACTACATTATCAACC.......................2511.001001000000000000000000000000000000000000000000000000000000000000
..............AATCTGGGCGTGCCGCTGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000001000000000000000000000000000000000
..............................TGCAAATGTTGTCGAATGAGGTAAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000001000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAACCTCTTCTATGCAGGCC........2211.001001000000000000000000000000000000000000000000000000000000000000
..............................TGCAAATGTTGTCGAATGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTACATTATCAACCTCTTCT.................2311.001000100000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTACATTATCAACCTCTT...................2111.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................AAATGTATTGCAATT--A-----------AA--CGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000010000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................AAA-----ATATTTATATCAATAC..................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTATGCAGGCCGCCGC...1911.001000000000000000100000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCTATGCAGGCCGCC.....1811.001001000000000000000000000000000000000000000000000000000000000000
...........GACAATCTGGGCGTGCCGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACATTATCAACCTCTTCTA................2111.001000000000000000000000000000000010000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTCTTCTATGCAGGCCGCC.....2111.001000000000000000000000000000000010000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................TGAAAAAAAGAAAATTGGCTG............................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGGATAATACTACATTATCA..........................2311.001000000000000000000000010000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAACCTCTTCTATGCAGGCCGCCGCAC.2911.001000100000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTACATTATCAACCTCTTCT.................2211.001001000000000000000000000000000000000000000000000000000000000000
..........CGACAATCTGGGCGTGCCGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000001000000000000000000000000000000000000000000000000000
...............................GCAAATGTTGTCGAATGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000010
...............................GCAAATGTTGTCGAATGAGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
..............AATCTGGGCGTGCCGCTGCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
GCTACGAGGGCGACAATCTGGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACTACATTATCAACCTCTT...................2211.001000100000000000000000000000000000000000000000000000000000000000
...........GACAATCTGGGCGTGCCGCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000001000000000000000000000000000000000
..TACGAGGGCGACAATCTGGGCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATACTACATTATCAACCT......................2111.001000100000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTTTGGATAATACTACATT..............................2211.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
GCTACGAGGGCGACAACCTGGGCGTGCCGCTCCAAATGTTGTCAAATGAGGTAAGTGCA------ACT--CCT-----------------------------AACTC-----------CAG-T-------------TCCGATT--C----A----A--A--TTCG-----------------ATTTGTCCCAAGA---------AAA-----AAAAAA-GA-------AGTTT--AAATA-------T-------TTTGATT----------------TTTGTAAGCGCACCA-------------AAGTAAGTGAAAT----ATTTAACAAACAAAAAATTGGCT--CCAA------------------------------------------TC---------G-AAAAGTGTGAAAA-----------------------A----ATTGATTGAAAATTGTA--ACAAATGTAAA----------C-----------------------GA----AAACAGATT---TT---ATTA-----TTT------------TAT-------------------------------T------TTAATTTAA---TT---------TT-------------TGTTTTTCTTTTTC---C-TTTATAT---TTGTATGGCAA-------T--TCTAGCTTTTGGATAATACTACATTATCAACCTCTTCTATGCAGGCCGCCGCACCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAACCTCTTCTATGCAGGC.........2112.002200000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTACATTATCAACCTCTTCT.................2311.001100000
...........GACAACCTGGGCGTGCCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
.CTACGAGGGCGACAACCTGGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT---TTGTATGGCAA-------T--TCTAG..................................................1911.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTA--ACAAATGTAAA----------C-----------------------GA----.................................................................................................................................................................................................................................1911.001100000
.....GAGGGCGACAACCTGGGCGTGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
...........GACAACCTGGGCGTGCCGCTCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
droGri2
GCTATGAGGGCGACAATTTGGGTGTACCGCTGCACATGTTGTCAAGTGAGGTAAGTGCA------ACA----------------------------------------AACT------TGGATATTCAAAAGTTATCACAATT--A----A----AAT---CGAC---------------A-ATTTGTCCCGAAACTCCCA-------------ATAA-AA-------AGTTC-----------AA-T-------TTTGATTT---------------TTTGTGAGCGCACCA-------------AAGTAAGTGA------------------ACTAATTTGGCTGTAAACAAAATATACTTTTATC--------------------TACTATTTGAATAGTGCGTGA----------------------------------------TTAATTCAAAATTG----AC-------------------------------------------AA----ATACAAAATATAAAAATTTTA-----TTTTAACAT------TAT-----------------TCAAATACTTGATTT-----TTTAATTTTATTATTT--------------------------TTTCCATT--CTTTC-TTTTTTTTTATATTATGCCAT-------A--TCTAGCTTTTGGATAATACTACATTATCAACCTCTTCTATGCAGGCCGCCGCACCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...................................................................................................................................................................................................................................................................ATTT---------------TTTGTGAGCGCACCA-------------AAGTAAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00110
droAna3
GATACGAGGGCGATAACCTTGGCGTCCCCCTGCACCTGTTGTCTAGCGAGGTAAGTCCTGA----A-T--CA--------------------------------------CT------TGC-A-TT------AAATT-------------A----CA-AT-CCT---------TGAG-----AATTGTCCTGAAA---------A---------------------------T------AT----A---TTGA--TTTTATTTGTTGA----------TTTGTGAGCGCACCAG------------AAGTAAGTGA------------------AACCAATCGGCAGATCAA-------------------------------------------T---------AAGAAAATGTGAAAA-----------------------A----TTCG----T---------------------AAA---------CT------C-------------------------------TT---ATGATTTC-TAT------------TAT-------------------------------T-----TATAA--------TTT-------ATTTT-----------CGTTTTTCCTT--C-----TG--TTT---CTTTGTCGCAA-------T--TCTAGCTTTTGGATAATACTACATTATCAACCTCTTCTATGCAGGCCGCCGCACCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................CTTGGCGTCCCCCTGCACCTGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
............ATAACCTTGGCGTCCCCCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATCAACCTCTTCTATGCAGGC.........2411.001010000
...............................GCACCTGTTGTCTAGCGAGCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
..TACGAGGGCGATAACCTTGGCGTCCCCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTACATTATCAACCTCTTCT.................2311.001010000
droBip1
GCTACGAGGGCGATAACCTTGGCGTGCCCCTGCACCTGTTGTCTAGTGAGGTAAGTCCTGA----ATT--G---------------------------------------CT------TGCTA-TT------TTGTC-------------A----CA-AT-CCT---------TGAG-----AATTGTCCTGAAA---------AC---------------------------------AT----A---TTGA--TTTTATTTGTTGA----------TTTGTGAGCGCACCAA------------AAGTAAGTGA------------------AACCAATTGGCAGATCAA-------------------------------------------T---------AAGAAAATGTGAAAA-----------------------A----TTCG----T---------------------AAT---------CT------C-------------------------------TT---ATGATTTG-TAT------------TAT-------------------------------T-----TATAA--------TTT-------ATTTT-----------CGTTTTTCCTT--C-----TG--TTT---CTTTGTCGCAA-------T--TCTAGCTTTTGGATAATACTACATTATCAACCTCTTCTATGCAGGCCGCCGCACCSizeHit CountTotal NormTotal
No Reads
droKik1
GCTACGAGGGCGACTCTCTTGGTGTGCCGCTGCACATGTTGTCGAGCGAGGTAAGTGTT-----------TCAATT-----------C----------------------CCTGGAGGTGA-T-------------TCC--TT--C----A-------------------------------GATTGTCCTGAAA---------AAG-------------------------T------AT----A----TTA--TTTGATTTGTTGA----------TTTGTGAGCGCACCCG------------AAGTAAGTGA------------------ATCCAATTGGA-------------------------------------------------------------------------------------CAAGTGACGATGAG-AA-ATTG----------------TTTACGGAGAAA----------CC------C-------------------------------TT---TTGATTTCGTTT------------TAT-------------------------------T-----TATAA--------TTT-------ATTTT-----------CGTTTTTCTTTT-C---C-TTC-TTT---CTTTGTGGCAA-------T--TCTAGCTTTTGGATAATACTACATTATCAACCTCTTCCATGCAGGCCGCCGCACCSizeHit CountTotal NormTotal
No Reads
droFic1
GTTACGAGGGCGACAATCTTGGCGTGCCACTCCATATGCTGTCTAGTGAGGTGAGTGAA------AGT--CCTTTT-----------TG--GTAA---TC---------------TAGTGC-T-------------TCCTGTT--C----GAA-AGAAA--CAAG-----------------AATTGTCCTC--------------------------------------CTCAAGAATATT--------TGA--TTTTATTTGTTGA----------TTTGTGAGCGCACCAG------------AAGTAAGTGA------------------AACCAATTGGCAGTCGAA-------------------------------------------C---------GAGAAAATGTGGAAA-----------------------A-T--CTTG----A---------------------AAACAACAACCCCC------C-------------------------------TT---TTGATTTG-TAT------------TAT-------------------------------T-----TATAA--------TTT-------ATT-------------CGTTTTTCTTT--C-----TT--TTT---CTTTGTGGCAA-------A--TCTAGCTTTTGGATAATACTACATTATCAACCTCTTCTATGCAGGCCGCCGCACCSizeHit CountTotal NormTotal
No Reads
droEle1
GCTACGAGGGCGACAATCTTGGCGTGCCACTGCACATGTTGTCGAGTGAGGTAAGTGTC---CACAGTGACC------ACA----TTTA--GTAA---TTT-AATAG---CG------TGG-T-------------TCCTGTTCTC--GAAAG-AAAAA--CATG-----------------AATTGTCCTAAAA---------AAA----------------------AAAT------ATT--------TAA--TTTTATTTGTTGA----------TTTGTGAGCGCACCAG------------AAGTAAGTGA-----------------CAACCAATTGGCAATCGAA-------------------------------------------C---------GAGAAAATGTGGAAA-----------------------A-T--CTTG----A---------------------AAA---------CC------C-------------------------------TT---ATGATTTG-TAT------------TAT-------------------------------T-----TATAA--------TTTATAATTTATT-------------TATTTTTCTAT--C-----TT--TTT---CTTTATGGCAA-------A--TATAGCTTTTGGATAATACTACATTATCAACCTCTTCTATGCAGGCCGCCGCACCSizeHit CountTotal NormTotal
No Reads
droRho1
GTTTCGAGGGCGACAATCTTGGCGTGCCACTGCACATGTTGTCGAGTGAGGTGAGTCAC------ATT--CCATTT-----------CATT---AATACACAAAAAA---C------GTAA-T-------------TCCTGTT--C----AAA-AAAAA--CATG-----------------AATTGTCCTGAGA---------A--------------------------AT------ATT--------TAA--TTTTATTTGTTGA----------TTTGTGAGCGCACCAG------------AAGTAAGTGA------------------AACCAATTGGCATTTGAA-------------------------------------------C---------GAGAAAATTTGGAAA-----------------------A-AAACTTG----A---------------------AAA----------C------C-------------------------------TT---ATGATTTC-TAT------------TAT-------------------------------T-----TATAA--------TTT-------ATT-------------TGTTTTTCTAT--C-----TT--TTT---CTTTATGGCAT-------A--TATAGCTTTTGGATAATACTACATTATCAACCTCTTCTATGCAGGCCGCCGCACCSizeHit CountTotal NormTotal
No Reads
droBia1
GTTACGAATGCGATAATCTTGGCGTGCCACTGCACATGTTGTCGAGTGAGGTGAGTCCA------AGA--CCT--T-CTA--------ATA---A---TCC-CATAC---CC------TGGTT-------------TCCAGTT--A----A----AA-A--ATGG-----------------ATTTGTCCTGAAA---------AA----------------------------------T----A----TGA--TTTTATTTGTTGA----------TTTGTGAGCGCACCAG------------AAGTAAGTGA------------------AACCAATTGGCAGTCGAA-------------------------------------------C---------GAGAAAATATTAAAA-----------------------ATAAACCTG----A---------------------AA-----------C------C-------------------------------TT---TTTATTTC-TTT------------TAT-------------------------------T-----TATAA--------TTT-------ATT-------------TAT-TTTCTTT--C-----TT--TTT---CTTTGTGGCA--------A--TCTAGCTTTTGGATAATACTACATTATCAACCTCTTCTATGCAGGCCGCCGCACCSizeHit CountTotal NormTotal
No Reads
droTak1
GCTATGAAGGCGATAATCTTGGCGTGCCACTGCACATGTTGTCGAGTGAGGTGAGTCTT-----------TCTTTTCCTA--------GTT---A---CTC-TGTTC---AT------TGGTT-------------TCCTGTT--TACA-AAA-AAAAA--CTGG-----------------ATTTGTCCTAAAA---------A------------------------------------------TCTTGA---TTTATTTGTTGA----------TTTGTGAGCGCACCAA------------AAGTAAGTGA-------------------ACCAATTGGCAGTCGAA-------------------------------------------C---------GAGAAAATATTGAAA-----------------------A-----TTA----A---------------------AAA-------CCCC------C-------------------------------TT---ATTATTTG-AAT------------TAT-------------------------------T-----TATAA--------TTT-------TTG-------------TATTTTTCTTT--C-----TT--TTT---CTTTATGGCAAAACAAAAA--TCTAGCTTTTGGATAATACTACATTATCAACCTCTTCTATGCAGGCCGCCGCACCSizeHit CountTotal NormTotal
No Reads
droEug1
GCTACGAGGGCGACAATCTTGGCGTGCCACTGCACATGTTGTCGAGTGAGGTGAGTCGA------AGT--CTT--T-CAA--------ATT---A---CTT-TACAA---CT------TAGTT-------------TCCTGTT--A----A---AAAAA--CATG-----------------ATTTGTCCTGAAA---------AAA-------A-----C-------AAAAC------ATT--------TAA--TTTGATTTATTGA----------TTTGTGAGCGCACCAG------------AAGTAAGTGA------------------AACCAATTGGCAGTCGAA-------------------------------------------C---------GAGAAAATGTGAAAA-----------------------A-GAACTTA----T---------------------AA----------CC------C-------------------------------TT---ATGATTTG-TAT------------TAT-------------------------------T-----TTTAA--------TTT-------ATT-------------TATTTTTCTTC--CTTTTCTT--TTT---CTTTATGGCAA-------A--TATAGCTTTTGGATAATACTACATTATCAACCTCTTCTATGCAGGCCGCCGCACCSizeHit CountTotal NormTotal
No Reads
dm3
GCTACGAGGGCGACAATCTCGGCGTGCCATTGCACATGTTGTCTAGTGAGGTAAGTCCA------AGTGTCCC-----ATA----TTCATT---G---CCC-AACAC---CT------TGGTT-------------TCCTGTT--C----A---AAAAA--CATG-----------------ATTTGTCCAAAAA---------AAA-----------TGG-------AAAAT------AATTAAATT-------TTTGATTTGTTGA----------TTTGTGAGCGCACCAG------------AAGTAAGTGA------------------AACCCATTGGCAGTCTAA-------------------------------------------C---------GAAAAAATATGAAAA-----------------------G-A--ATTG----A---------------------AA------------------C-------------------------------TT---ATGATTTC-TAT------------TAT-------------------------------T-----TTTAA--------TTT-------ATT-------------TATTTTTCTTT--CTTTC-TTT-TTT---CTGTATGGCAA-------A--CATAGCTTTTGGATAATACTACATTATCAACCTCTTCCATGCAGGCCGCCGCACCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................CACATGTTGTCTAGTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18130.00300000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000010000000000000000000000000000000000000010200000002020000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000100015270100000000000200000000000000000000000000000
........GGCGACAATCTCGGCGTGCCATTGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................TCTAGTGAGGTAAGTCCA------AGTGTCCC-----A........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000300000
......................................................................................................................................................................................................................................................TT-------TTTGATTTGTTGA----------TTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000
...........................................TAGTGAGGTAAGTCCA------AGTGTCCC-----A........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.CTACGAGGGCGACAATCTCGGCGTGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000
..TACGAGGGCGACAATCTCGGCGTGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....................................TGTTGTCTAGTGAGGTAAGTCCA------AG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000100000
.....GAGGGCGACAATCTCGGCGTGCCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........GACAATCTCGGCGTGCCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................AAA-----------------------G-A--ATTG----A---------------------AA------------------C-------------------------------TT---ATGATT..........................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........GACAATCTCGGCGTGCCATT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................GCGTGCCATTGCACATGTTGTCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-TTT-TTT---CTGTATGGCAA-------A--CA.....................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCTCTTCCATGCAGGCCGCC.....2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGATAATACTACATTAT............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............ATCTCGGCGTGCCATTGCACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
................................................................................A----TTCATT---G---CCC-AACAC---CT------TGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................T-------TTTGATTTGTTGA----------TTTGTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................TGCACATGTTGTCTAGTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
......AGGGCGACAATCTCGGCGTGCCATC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................CTAGTGAGGTAAGTCCA------AG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................TGGTT-------------TCCTGTT--C----A---AAAAA--CATG-----------------ATT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................TT-------TTTGATTTGTTGA----------TTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................TGCACATGTTGTCTAGTGAGGTAAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................CTCGGCGTGCCATTGCACATGTTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................TGA----------TTTGTGAGCGCACCAG------------AAGTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.........GCGACAATCTCGGCGTGCCATTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................CCC-----ATA----TTCATT---G---CCC-AA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......AGGGCGACAATCTCGGCGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCAACCTCTTCCATGCAG...........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATACTACATTATCAACCTCTTCCA................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.CTACGAGGGCGACAATCTCGGCGTGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................TGA----------TTTGTGAGCGCACCAG------------AAGTAAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------TATTTTTCTTT--CTTTC-TTT-T.................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................CATTGCACATGTTGTCTAGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................TGTCCC-----ATA----TTCATT---G---CCC-AACAC---C........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTACATTATCAACCTCTTCCATGCAGGC.........3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................ACATGTTGTCTAGTGAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
...........GACAATCTCGGCGTGCCATTGCACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCTCTTCCATGCAGGCCGC......2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....CGAGGGCGACAATCTCGGCGTGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
................TCTCGGCGTGCCATTGCACATGTTGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................TTGCACATGTTGTCTAGTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..TACGAGGGCGACAATCTCGGCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................CACCAG------------AAGTAAGTGA------------------AACCCATTGGCA.............................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........GGCGACAATCTCGGCGTGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................CCATTGCACATGTTGTCTAGTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................TGCACATGTTGTCTAGTGAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT---CTGTATGGCAA-------A--CATAGCT................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...ACGAGGGCGACAATCTCGGCGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........GGCGACAATCTCGGCGTGCCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................TTCATT---G---CCC-AACAC---CT------TGGTT-------------TCCTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............................GCACATGTTGTCTAGTGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1930.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GCTACGAGGGCGACAATCTCGGCGTGCCACTGCACATGTTGTCTAGTGAGGTGAGTCCA------AGTGTCCCG-----------TCCATT---G---CCC-AACAC---CT------TGGTT-------------TCCTGTT--C----A----AAAA--CATG-----------------ATTTGTCCAAAAA---------AAA-----AA-AA-TGG-------AAAAT------AATTAAATT-------TTTGATTTGTTGA----------TTTGTGAGCGCACCAG------------AAGTAAGTGA------------------AACCAATTGGCAGTCGAA-------------------------------------------C---------GAGAAAATATGAAAA-----------------------G-A--ATTG----A---------------------AA------------------C-------------------------------TT---ATTATTTA-TAT------------TAT-------------------------------T-----TATAA--------TTT-------ATT-------------TGTTTTTCTTT--CTTTC-TTT-TTT---CTGTATTGCAA-------A--TATAGCTTTTGGATAATACTACATTATCAACCTCTTCCATGCAGGCCGCCGCACCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................TGCACATGTTGTCTAGTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200000200000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--CTTTC-TTT-TTT---CTGTAT......................................................................1811.00100001000000000000
................TCTCGGCGTGCCACTGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
.............CAATCTCGGCGTGCCACTGCACATGTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
...........GACAATCTCGGCGTGCCACTGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
...........GACAATCTCGGCGTGCCACTGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAA-------A--TATAGCTTTTGGAT.........................................2211.00101000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTTA-TAT------------TAT-------------------------------T-----TATG............................................................................................................................................18200.10200000200000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTA-TAT------------TAT-------------------------------T-----TAT.............................................................................................................................................15200.05100000010000000000
droSec2
GTTACGAGGGCGACAATCTCGGCGTGCCACTGCACATGTTGTCTAGTGAGGTGAGTCCA------AGTGTCCCG-----------TCCATT---G---CCC-AACAA---CT------TGGTT-------------TCCTGTT--C----A----AAAA--CATG-----------------ATTTGTCCCAAAA---------AAA--------AA-TGG-------AAAAT------AATTAAATT-------TTTGATTTGTTGA----------TTTGTGAGCGCACCAG------------AAGTAAGTGA------------------AACCAATTGGCAGTCGAA-------------------------------------------C---------GAGAAAATATGAAAA-----------------------G-A--ATTG----A---------------------T------------C------C-------------------------------TT---ATGATTTC-TAT------------TAT-------------------------------T-----TATAA--------TTT-------ATT-------------TGTTTTCCTTT--CTTTC-TTTTTTT---CTGTATGGCAA-------A--TATAGCTTTTGGATAATACTACATTATCAACCTCTTCCATGCAGGCCGCCGCACCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................CTGCACATGTTGTCTAGTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020002
...............................................................................................................................................................................................................................................................................................GCACCAG------------AAGTAAGTGA------------------AACCA....................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
................................CACATGTTGTCTAGTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001
...........................................................................................................................................................................................................................................................................................................................A------------------AACCAATTGGCAGTCGAA-------------------------------------------C---------GAGA..............................................................................................................................................................................................................................................................................................................................................2411.0010001
...................................................................................................................................................................................................................................................AAATT-------TTTGATTTGTTGA----------TTTGTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010
...............................GCACATGTTGTCTAGTGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
droYak3
GTTACGAGGGCGACAACCTCGGCGTGCCACTGCACATGTTGTCCAGTGAGGTGAGTCCA------TGT--C---------------------------------------CT------TGGTT-------------TCCTGTT--C----TG--AAAAA--CATG-----------------ATTTGTCCCAAA---CCAAAAAAAA--AAAAA-AA-TATTGAAAAAAAAAT------AATTACATT-------TTTGATTTGTTGA----------TTTGTGAGCGCACCAG------------AAGTAAGTGA------------------AACCAATTGGCAGTCAAA-------------------------------------------C---------GAGAAAATATGAAAA-----------------------C-A--AACG----A---------------------AA------------------C-------------------------------TT---ATGATTTG-TAT------------TAT-------------------------------T-----TATAA--------TTT-------ATT-------------TGTGTTTCTTT--CTTTC-TT--TTT---CTGTATGGCAA-------A--TATAGCTTTTGGATAATACTACATTATCAACCTCTTCTATGCAGGCCGCCGCACCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................CACATGTTGTCCAGTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00200001100000
..TACGAGGGCGACAACCTCGGCGTGCCAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCAACCTCTTCTATGCAGGCCGCC.....2611.00101000000000
........GGCGACAACCTCGGCGTGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACTACATTATCAACCTC.....................2011.00100100000000
..................................................GTGAGTCCA------TGT--C---------------------------------------CT------TGGTT-------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCTCTTCTATGCAGGCCG.......2111.00101000000000
...........GACAACCTCGGCGTGCCACTGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010000000
.............CAACCTCGGCGTGCCACTGCAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
droEre2
GTTACGAGGGCGACAATCTCGGCGTGCCACTGCACATGTTGTCCAGTGAGGTGAGTCCA------AGT--CCTTTC-----------CATT---G---CCC-AACACCATCT------TGGTT-------------TCCTGTT--C----A----AAAA--CATG-----------------ATTTGTCCCAAAA---------AAA---AAAA-AA-TAT-------AAAAT------AA------T-------TTTGATTTGTTGA----------TTTGTGAGCGCACCAG------------AAGTAAGTGA------------------AACCAATTGGCAGTCGAA-------------------------------------------C---------GAGAAAATATGAAAA-----------------------C-C--ATTG----A---------------------GA------------------C-------------------------------TT---ATGATTTT-TAT------------TAT-------------------------------T-----TATAA--------TTTATAATTTATT-------------TGTTTTTCTTT--C-----C---TTT---CTGTATGGCAA-------A--TATAGCTTTTGGATAATACTACATTATCAACCTCTTCTATGCAGGCCGCCGCACCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................................................................................................................................................................................................................................................GATTTGTTGA----------TTTGTGAGCGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAACCTCTTCTATGCAGGCCGC......2411.0010000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACATTATCAACCTCTTCTATGCA............2511.0010100000
..................................................GTGAGTCCA------AGT--CCTTTC-----------CATT---G---CCC-.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACTACATTATCAACCTCTTCT.................2411.0011000000
...........GACAATCTCGGCGTGCCACTGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
........................................................................................................................................................................................................................................................................................................................GTGA------------------AACCAATTGGCAGTCGAA-------------------------------------------C---------GAGA..............................................................................................................................................................................................................................................................................................................................................2711.0010000010
................................CACATGTTGTCCAGTGAGGTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000010
.................................ACATGTTGTCCAGTGAGGTGAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000010
.............CAATCTCGGCGTGCCACTGCACATGTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000010
GTTACGAGGGCGACAATCTCGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000010

Generated: 06/08/2015 at 02:52 PM