ID:

dpe_535

 Coordinate:

scaffold_1:2470945-2471241 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-90.0 -89.9 -89.9

Flybase annnotation

exon [dper_GLEANR_21390:1]; CDS [Dper\GL19249-cds]; CDS [Dper\GL19249-cds]; exon [dper_GLEANR_21390:2]; intron [Dper\GL19249-in]

Repeatable elements

NameClassFamilyStrand
(TG)nSimple_repeatSimple_repeat+

Sense Strand Reads

-------------#####################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GTGGGCCACGAAAATGTCTGGCTGCCTGAGAGACGACCGACTGCACGAGTGTGTGTGTGTGTGTGTGCGTGTGCGTGTTCTGCTGCGGCTTGATGTCGCGCGCAACGCCGCAGACGACGACTCATAACGGTTTCGCACTTCGAGCGGACAAGAAGGGTTTACAGAGCAGCATCCGCATTCGCATTCGCATCGGCAGCAAGCAGAATCCGCATTTGCGTGTCGCGTGTGTTTCCCTCCATCCAGTGAGAAAGATATTGTATCTTGTATCTTGTATACCCCCAAGTGATTGTTTTGTGCAACCCGTACCGGAAAATCCATCAAAATTCTGTCCTCACTGTGGACCCCAGCGTCGGCTTCGCAATTGGCGGGCGGCGCAACCAACGGCGGAGGCAGTGGC
**************************************************..(((((.(((((.(((((.((((.(((((((((((((((((.(((...)))))).))))))).....(((((......(((.(((.......)))))).....)))))..))))))))))).))))).))))).)))))(((((((((((.......))..)))).)))))............((((..(((((((.((((((...))))))((((.(((((((....(((....)))...)))))))...))))(((((............)))))..)))))))))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total V042
embryo
 M042
female body
 M021
embryo
 V057
head
 V111
male body
.....................................................................................................................................CGCACTTCGAGCGGACAAGAAG.................................................................................................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................ATTCTGTCCTGAATGTGGACT...................................................... 21 3 4 0.25 1 0 1 0 0 0
......................................................................................................CAAGGCCACAGACGAAGACTC.................................................................................................................................................................................................................................................................................. 21 3 6 0.17 1 0 0 1 0 0
.....CCACTAAAATGTCTGGCGCC.................................................................................................................................................................................................................................................................................................................................................................................... 20 3 12 0.08 1 1 0 0 0 0
.................................................TGTGTGTGTGTGTGTGTGCG........................................................................................................................................................................................................................................................................................................................................ 20 0 20 0.05 1 0 0 0 0 1
.....................................................................................................................................................................................................................................................AGAGAGATATTGTATATT...................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 1
...............................................................................................................................................................................................................................GTGCGATTCCCTCCATCCG........................................................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0
.........................................................................................................................................................................................................................................................TGATATTGTATCTTCTATCG................................................................................................................................ 20 3 20 0.05 1 0 0 0 1 0
........................................................................................................................................................................................................................GTGTGGCGTGTGACTCCCT.................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 1
......................................................................TTGCGCGTTCTGCGGCGGCT................................................................................................................................................................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 1 0
...................................................................................................................................................................................CGCATTCATATCGGCAGAAA...................................................................................................................................................................................................... 20 3 20 0.05 1 0 1 0 0 0

Anti-sense strand reads

CACCCGGTGCTTTTACAGACCGACGGACTCTCTGCTGGCTGACGTGCTCACACACACACACACACACGCACACGCACAAGACGACGCCGAACTACAGCGCGCGTTGCGGCGTCTGCTGCTGAGTATTGCCAAAGCGTGAAGCTCGCCTGTTCTTCCCAAATGTCTCGTCGTAGGCGTAAGCGTAAGCGTAGCCGTCGTTCGTCTTAGGCGTAAACGCACAGCGCACACAAAGGGAGGTAGGTCACTCTTTCTATAACATAGAACATAGAACATATGGGGGTTCACTAACAAAACACGTTGGGCATGGCCTTTTAGGTAGTTTTAAGACAGGAGTGACACCTGGGGTCGCAGCCGAAGCGTTAACCGCCCGCCGCGTTGGTTGCCGCCTCCGTCACCG
**************************************************..(((((.(((((.(((((.((((.(((((((((((((((((.(((...)))))).))))))).....(((((......(((.(((.......)))))).....)))))..))))))))))).))))).))))).)))))(((((((((((.......))..)))).)))))............((((..(((((((.((((((...))))))((((.(((((((....(((....)))...)))))))...))))(((((............)))))..)))))))))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total V057
head
 M042
female body
 V042
embryo
 V111
male body
.........................................................................................................................................................................................................................................................................................................................AGATAGTTTTGAGAAAGGAGT............................................................... 21 3 6 0.17 1 1 0 0 0
........................................................................................................................................................TGCCCAAATGCCTAGTCGT.................................................................................................................................................................................................................................. 19 3 13 0.08 1 0 1 0 0
..............................................................................................................................................................................................................................................GGGTCAATCCTTCTATAAC............................................................................................................................................ 19 3 18 0.06 1 0 0 1 0
.......................................................................................................................TGAGTATGGCCTAAGAGTG................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_1:2470895-2471291 + dpe_535 G-TGGGCCACGAAAATGTCTGGCTGCCTGAGAGA-CG--ACCGACTGCACGAGTG--------------------------------------TGTGTG-T---------GT--------------------------G------TGTGTGCG----TGTGC-----------------------GT---GTTCT-----GCTG----CGGCTTGA--------------------TGTCGCGCGCAACGCCGCAG---------------------------------------------ACGAC-----------GACTCATAACGGTTTCGCACTTCGAGCGGACAAGAAGGGTT-TACAG---AGCAGCATCCG-------CATTCGC--------ATTCGCATCGGCAGCAAGCAGAATCCG-------------------------------------------CATTTGC-------GTGTCGCGTGTGT-------------------------------------------------------------------------------------------------------------------T----------------------------------------------------TCCCTCCATCC--AGTGAGA-------------------------------AAGATATTGTATCTTGTATCTTGT-------------ATACCCCCAA--------GT----GATTGTTTTGT-----------GC------------------------------------------------------------AACCCG---TACCG--GAAAATCCATCAAAATTCTGTCCTCACTGTGGACCCCAGCGTCGGCTTCGCAATTGGCGGGCGGCGCAACCAACGGCGGAGGCAGTGG------C
dp5 4_group3:993115-993523 + G-TGGGCCACGAAAATGTCTGGCTGCCTGAGAGA-CG--ACCGACTGCACGAGTG--------------------------------------TGTGT------------GT--------------------------G------TGTGTGCG----TGTGC-----------------------GT---GTTCT-----GCTG----CGGCTTGA--------------------TGTCGCGCGCAACGCCGCAG---------------------------------------------ACGAC-----------GACTCATAACGGTTTCGCACTTCGAGCGGACAAGAAGGGTT-CACAG---AGCAGCATCCGCATTCCGCATTCGC--------ATTCGCCTCGGCAGCAAGCAGAATCCG-------------------------------------------CATTTGC-------GTGTCGCGTGTGT-------------------------------------------------------------------------------------------------------------------T----------------------------------------------------TCCCTCCATCC--AGTGAGA-------------------------------AAGATATTGTATCTTGTATCTTGTACCTT------GTATACCCCCAA--------GT----GATTGTTTTGT-----------GC------------------------------------------------------------AACCCG---TACCG--GAAAATCCATCAAAATTCTGTCCTCACTGTGGACCCCAGCGTCGGCTTCGCAATTGGCGGGCGGCGCAACCAACGGCGGAGGCAGTGG------C
droWil2 scf2_1100000004585:2644825-2645165 + A-TGCTCGGCTAAAATGTCTGCCTTAATGACAGAGAG--AGCGACAGGGAGAGCG--------------------------------------AGAGA------------GA--------------------------G------TAAGAGCG----AGAGA-----------------------AA---AATCT--C--GTTA----TGATTTGAACCTGGCACAGCAGGCAACTTGTCGTGCGCAGCAAAGCAT---------------------------------------------TTG------------CGTTTCAAAACCGTTTCGTACTTTGAACGGACAAGAAGGGTT-TTACC------------------------------------TTTTG---CT-------------------CCGCTACTTTTTGAAAA----------------AAGCAAAGCAAAGTGTCGTCGC-------GTGTCACGTGTCGCGTGTT-GTGAATAT-CTTG----------------ATCCGTGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTGTT------------------------------------------------------------------------------------------A--TTAAATCTATCAAAATTCTGTCCTCACTGTGGACCCCGTCACCGT---------CGGCTTGTGGTGCT---------------GCTGG------C
droVir3 scaffold_12963:19053028-19053455 - dvi_12545 A-ACG--CACGAAAATGTCTGCTA-TGCGCGCGT--------------------G--------------------------------------TGTGTG-TAT-------G---CTGGCA-----AGAGAGTGTGAGTGCGTGTGTA----------------------------------------TGC--T--GGAGA-----GA--------------------CTGACAACTTGTCGTC-G--TCGTCGTCGTCGCTGCTGCTGCT----------------GCTGCTGCCGC-----CGTCGCTGAACATGGCATTCAAAACAGTTTCGCAGCTCGAGCGAACAAGAAGGGTT-CA-GT-------------------------------TA-----------CCGTTGCACGCAAAATCT------------ATTT---------CAGCCAT----AA-----GCAACAACACGTCGC-------GTGTGT-GTTTCAAGTGTTTCTGTGTGT-G----TG----------------TG----T--GT------------GCCTGT----GTGTGTTAGTTACAGCTA---------------------------------------------------------------------------------------------------------CAGTTAAAGTTAC----------------------------------------------------------------------TTTTGCCGCTAGCAT--------------------------------------CA--GACT-TCTTCTTCCCAGA---CAAGTTG---TCACG--CAAAATCCGCCAAAATTCTGTCATCACTGTGGACCACGCCGTC------GCAGCTAGCGGGAGGCGCAAGCAGCGA------------------C
droMoj3 scaffold_6500:24136906-24137348 + A-CAG--CACGAAAATGTCTGCCA-AGTGTGTGT--------------------GT------G---TGTG-----------------------TGTAT-----G------AATGCTAGAG-----AGAGGGAG--TGCATGAGTATG----------------------------------------TGTGCT--AGAGA-------------------------GATTGACAACTTGTCGTGCGCGTCGTCGCTG---CTTCTGCTACTGCTGCTGCCGCCGCAG---------------CCGTCGCTGAACGTGGCATTCAAAACAGTTTCGTAGCTCGAGCGAACAAGAAGGGTT-CA-G------------------------------------------TTTCAGTAGCACGCAAAATCT------------CT-T---------CAGTCAC----AA-----GCCAAGACACGTCGC-------GTGTGT-GTTTCAAGTGCTTGTGCGTGC-GTGCATG----------------TG----T--GT------------GCTTGTGTGTGTGTGTGAATTGCAACTA--------------GCGTG-------------------------------------------------------------------------------------------ACAATTACCAATAGC----------------------------------------------------------------------------AA--------------------------------------AAATAACA-ATTATTTCTTATA---TAAGTCA---CTATA--CAAAATCCGCCAAAATTCTGTCATCACTGTGGACCACGCCGTC------GCAGCTAGCGGGAGGCGCCAGCAGCGA------------------C
droGri2 scaffold_14353:27160-27617 - A-GCG--CTCGAAAATGTCTGCCA-GGCGAGTGT--------------------G--------------------------------------CGTGT------------GTATTTAAGA------GAGAGAGTTTGCTTTTATGCC----------------------------------------TGT-----GTGTG----------------------TGCGTTCAGCAACTTGTCGTGCGCACCATCGAAGTCGTCGTGAACGTC----------------GCTGCTGCCAACGTC--------------CGCATTCAAAACAGTTTCGCAGCTCGAGCGAACAAGAAGGGTT-CA-ACACACACAG-------------AATTTACAGTTAGTTGCACGCTTCGCAA-------------------------------------------------AAGCACAACAA--TTTCGTCGC-------GTGTGTCTCGTCTGGTGTC-GT-------CTCG----------------TTTAATGAGT--GT------------TGTT-----GGTGTGTGAATTACAATTA---------------------------------------------------------------------------------------------------------CA-----AATTACAAATAACAAAT--------------TGCAAATT------ACAAATTACGAATTTAGCGCGC----AATTATTTTGCTGCC-GCATTTTTCTTGGGGTTGCC----------------------------------------GCTTTTGT----------------AAAAATTCGCCAAAATTCTGTCCTCATTGTGGAGCACGCCGTC------GCAGCTAGCGAACGGCG------------------ATAG------C
droAna3 scaffold_12916:1597108-1597539 - G-CGG--ACCAAAAATGTCTGCCG-GACGAGGCAGAG--A--------------GC------GGC-----GTGCGATGTATCCGTCAGTGCGCGGCCT------GCGTCTGTATCTG----------TGAGGCACTGTATCTGTATCTGTATC----------------------------------TGT---------------ACCTGGCCTGACGACGAC----TCGACAACTTGTCGTGCGA-----------------------------------------------------CA--------------CACTCTCATAACAGTTTCGCAGCTCGGGCGGACAGGAAGGGTT-CC-GG-------------------------------TAA----------CA-------------------G-AAGACCTGTGAGAA-TTA-------------------------------------------------------------------------------------------------------------------------------------------CAAAGTGCAGGCCACCA---ACGTGTTGATAAGCTCGAAAGTTCGAATAATCAGATTTTAAGACTGCCTCG-----------------CCGAAGAAA-------------------------------TAAA-AACGAAA----------------------------AC-------------------------------------AA------------------------AAACAAACC----CAAGTGAC--ACTCTTTCCGACC---AAAG---TTAAAAAG--CATAAGCCTTCAAGATTCTGTCCTCACTGTGGACCCCAGCGACGC---------TGGCAGGCGGCGCCCCCAGCGGAGGAGGAGGTGG------C
droBip1 scf7180000396728:257773-258244 - G-CAG--ACCAAAAATGTCTGCCG-GACGAGAGA--------------------GG--------C-----CTGCGATGTATCCGTCAGTGCGCGAG-A-CT---GCCTCTGTATCTG-TA-----TCTGTA--TGTGTATCTGTATC----------------------------------------TGT-----GAAGCACTGTATCTGGCCTGACGACGAC----TCGACAACTTGTCGTGCGG-----------------------------------------------------CA--------------CACTCTCATAACAGTTTCGCAGCTCGGGCGGACAGGAAGGGTT-CC-GG-------------------------------TAT----------CA-------------------G-AAAACCTGTGAGAA-TCAGCA----GAAAAC--------------CTCGCTGCGAGTCTAATGCGA----------------------T-----TTCAGTGCA---------------------------------CC-----------------------------------AAAGACGTGTCGATAAGCCCGAAAGTTCCAATAATCTGATTTTAAGACTGTCTCGTAATACTCTCTGCGTTCCCGAAGAAAGACTACAATACGCACAA------------------------------------------------------------------------------------------------------------------------------GC----CAAGTGAC--ACTTTTTCCGACT---GCAG---TTCT-AAG---CTAAGCCTTCAAGATTCTGTCCTCACTGTGGACCCCAGCAACGC---------TGGCAGGCGGCGCCCCCAGCGGAGGAGGAGGTGG------C
droKik1 scf7180000302401:951014-951429 - CCGAG--ACCAAAAATGTCCGCTT-AACGAGAGA--------------------GA-------GC-CGGT-----------------------CGTCT------------GTATCTG-TA-----TCTGTG--------------------TA----TCTGCTACTGCTGGCCTGCATCTGTATC--CGT-----GAA-------AACTGGATTGACG------------ACAACTTGTCGTGTGG-----------------------------------------------------CA-----------CA-CGCTCTCACAACAGTTTCGCAGCTCGAGCGGACAAGAAGGGTT-CCA---------------------------------------TCCGTTTCGGTAA---AGAAAATCTGAGGAAAAACCTGTGAAAATTTATG-----AGAAAT--------------CACGACGCGTGTTCAGTGCGA-TTT--------ATCTGCGAGTTA----TT-AGTGAA---------------------------------CCTTT-----TGGGT----------------------------------------------------------------------------------------------------------TATAATACGTACAATTA------------------------------------------------------------------------------------------------------AGTGCCGT------------------------C-GAGACTGTTTTCGCCTTCGAAA---GT---AGAACAAA-AAATCTTCAAAATTCTCTCCTCACTGTGGACCCCGGCGACGC---------TGGCGGGCGGCGCAACCAACGGAGGAGGAGCTGG------A
droFic1 scf7180000453904:875271-875454 - G-GGG--TCC-AAAATGTCCGCTG-AACGAGAGA--------------------GA------GAG-TCCC-----------------------GGTTT------------GCACCAGGTA-----ACTGAGAGTCTGTATCGACATCTGTGTGTGTATC----------------------------TGCGCTGTGGAGG-----AACTGGCCTGACGAC-------TCGCCAACTTGTCGGGCGG-----------------------------------------------------CA--------------CACTCTCACAACAGTTTCGCAGCTCGAGCGGACAAGAAGGGTT-CCCGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000491026:211164-211344 + G-AAG--TCCAAAAATGTCTGCTT-AACGAGGGAGAGAGA--------------GCAACTGCTGCCTGTG-----------------------CGCTT------------GTATCTGATA-----TCTGAAAGTTTGTATCTATATC----------------------------------------TGT-----GCAAG-----AACTGGCCTGACGAC-------TCGACAACTTGTCGGTCGG-----------------------------------------------------CA--------------CGCTCTCACAACAGTTTCGCAGCTCGAGCGGACAAGAAGGGTT-CCCGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000779917:41572-41744 + G-GCG--TCCAAACATGTCCGCTT-AACGAGAGA--------------------GA-ATTACGGC-TGTG-----------------------AGTTT------------GTATCTGGTA-----TCTGAGAGTTTGTATCTATATC----------------------------------------TGT-----AAAAG-----AACTGGCCTGACGAC-------TCGACAACTTGTCGGGCGG-----------------------------------------------------CA--------------CGCTCTCACAACAGTTTCGCAGCTCGAGCGGACAAGAAGGGTT-CCCGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302261:3231423-3231581 + T-GAA-CCGCAAAAATGTCCGCTT-TGCGAGAGA--------------------G------------------------------------------T------------GTATCTG-TA-----TCTGAGCGTCTGCATCTGTATC----------------------------------------CGT-----AGAGG-----AACTGGCCTGACGACTACTCAATCGACAACTTGTCGGGCGG-----------------------------------------------------CA--------------CGCTCTCACAACAGTTTCGCAGCTCGAGCGGACAAGAAGGGTT-T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415856:197828-198258 - G-AAA--TGCAAAAATGTCCGCTT-GAAGAGAGA--------------------GT------A---TGTC-----------------------CGTAT-----G------GCGTCCGTTG-----ACTGAGAGTCTGTATCTATATC----------------------------------------TGT-----A---G-----AACTCGCTTGACGACTACTCAATCGACAACTTGTCGGGCGG-----------------------------------------------------CA-------------TTGCTCTCACAACAGTTTCGCAGCTCGAGCGGACAAGAAGGGTTTCCCGG-------------------------------TGG----------CT-------------------GAAAAACCTGTGGAAAATTATCA---CAAAAAT--------------AACGACGCGATTTTAGTGCGT-GTTTCAAGTGC------G--GT-----TTAAGTGGATTTTA-ATC--GAATTTTGTGCCGAAATCTAAACCTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGGATTTTCTTCTAATAACAATAA--------GTTTTTAAACGTTTTGT-----------GC-------------------GAAGCAACCC----TAAATAAAA-ACCATTTTCGACCTCAAAA---GC---TCCA--GAGACACCTTCAAAATTCTCTCCTCACTTTGGACA---------------------------------------GGAGGAGGCGGTGGAGGAGCC
droEug1 scf7180000409554:1327660-1327832 - TGAAC--TCCCAATATGTCCGCTA-AGCGAGAGA--------------------GC------AGACCGTG-----------------------CGTTT------------GTATCTGGTA-----TCTGAGAGTAAGTATCTATATC----------------------------------------TGT-----ACGAG-----AACTGGCCTGACGACTAC----TCGACAACTTGTCGGGCGG-----------------------------------------------------AA--------------CGCTCTCACAACAGTTTCGCAGCTCGAGCGGACAAGAAGGGTT-CCCGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chr3R:11823902-11824056 + T-GTG--TG------------------------------------------------------------------------------------------------------------------------------TGTG------TGTGTGTG----TGTGTGAGTAGTGACTTGGATTACTTTG--GGC-----CA-------------------------------------------------------------------------------------------------------A--------------CACTC--AC------------------------------GGCA-ACAAC---AATAG-------------CAATCACAGTT-GC-AGCAGCAGCAGCAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCAGCA----------------------------GC-------------------------------------AG------------------------CGACAACTG----CAACTGCA--ACTGCATTGGCAT---AAAA---CTAAACCC--G----------------------------------------------------------------------------------------------
droSim2 2l:568531-568705 - A-ACG--TCGAAAAATGTCCGCTA-AACGAGAGA--------------------GC------AGA-TGTG-----------------------AGTTT------------GTATCTGGCA-----TCTGAGAGTCTGTATCTATATC----------------------------------------TGT-----CGAGG-----AACTGGCCTAACGACTACTCAATCGACAACTTGTCGGGCGG-----------------------------------------------------AA--------------CGCTCTCACAACACTTTCGCAGCTCGAGCGGACAAGAAGGGTT-CCCGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_14:577264-577443 - A-ACG--TCGAAAAATGTCCGCTA-AACGAGAGA--------------------GC------AGA-TGTG-----------------------AGTTT------------GTATCTGGCATAGTGTCTGAGAGTCTGTATCTATATC----------------------------------------TGT-----CGAGC-----AACTGGCCTAACGACTACTCAGTCGACAACTTGTCGGGCGG-----------------------------------------------------AA--------------CGCTCTCACAACACTTTCGCAGCTCGAGCGGACAAGAAGGGTT-CCCGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 2L:582949-583418 - A-AAG--TCGAAAAATGTCCGCTT-AGCGAGAGA--------------------GC------AGA-TGTG-----------------------AGTTT------------GTATCTGGCA-----TCTGAGAGCGTGTATCTATATC----------------------------------------TGT-----CGAGG-----AACTGGCCTAACGACTACTCAATCGACAACTTGTCGGGCGG-----------------------------------------------------AA--------------CGCTCTCACAACACTTTCGCAGCTCGAGCGGACAAGAAGGGTT-CCCGG-------------------------------TGG----------CT-------------------G-CAAACCTGTGGAAAAATATTAAATTAT-CAT--------------CACGACGCGATTGCAGTGCGT-GTTTCTAGTGC------G--GT-----TT-AGTGGACTTGGCATC--GAT---------------------------------TAAATC------------ACACCA---GCGTC----------------------------------------------------TTATTCAATCC--AGTGAAA-------------------------------GAAA-AACGTAGACTTTATATTGTGGATT-----------ACAAAAA--------ATTTAAAAGCGTTCTGT-----------GCTTCAAAAGTGCCGCTTCTCAAAACAGCAGTGGGAAA----GAGACATTTTCCTAC-TCGAAA---GT---TTCA--TAGACTTCTTCAAAATTCTCTCCTCACTGTGGACCCCT------------------------------------GGAGGAGGCGGTGG-------
droEre2 scaffold_4929:650364-650538 - A-AAG--TCGAAAAATGTCCGCTT-AACGAGAGA--------------------GC------AGA-TGTG-----------------------AGTTT------------GTATCTGGCA-----TCTGAGAGCATGTAGCTATATC----------------------------------------TGT-----CGAGG-----AACTGGCCTAACGACTACTCAATCGACAACTTGTCGGGCGG-----------------------------------------------------AA--------------CGCTCTCACAACACTTTCGCAGCTCGAGCGGACAAGAAGGGTT-CCCGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
G-TGGGCCACGAAAATGTCTGGCTGCCTGAGAGA-CG--ACCGACTGCACGAGTG--------------------------------------TGTGTG-T---------GT--------------------------G------TGTGTGCG----TGTGC-----------------------GT---GTTCT-----GCTG----CGGCTTGA--------------------TGTCGCGCGCAACGCCGCAG---------------------------------------------ACGAC-----------GACTCATAACGGTTTCGCACTTCGAGCGGACAAGAAGGGTT-TACAG---AGCAGCATCCG-------CATTCGC--------ATTCGCATCGGCAGCAAGCAGAATCCG-------------------------------------------CATTTGC-------GTGTCGCGTGTGT-------------------------------------------------------------------------------------------------------------------T----------------------------------------------------TCCCTCCATCC--AGTGAGA-------------------------------AAGATATTGTATCTTGTATCTTGT-------------ATACCCCCAA--------GT----GATTGTTTTGT-----------GC------------------------------------------------------------AACCCG---TACCG--GAAAATCCATCAAAATTCTGTCCTCACTGTGGACCCCAGCGTCGGCTTCGCAATTGGCGGGCGGCGCAACCAACGGCGGAGGCAGTGG------CSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................................................................................................................................................................................................................................................................................................................................CGCACTTCGAGCGGACAAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000
.....................................................TG--------------------------------------TGTGTG-T---------GT--------------------------G------TGTGTGCG----...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000001
dp5
G-TGGGCCACGAAAATGTCTGGCTGCCTGAGAGA-CG--ACCGACTGCACGAGTG--------------------------------------TGTGT------------GT--------------------------G------TGTGTGCG----TGTGC-----------------------GT---GTTCT-----GCTG----CGGCTTGA--------------------TGTCGCGCGCAACGCCGCAG---------------------------------------------ACGAC-----------GACTCATAACGGTTTCGCACTTCGAGCGGACAAGAAGGGTT-CACAG---AGCAGCATCCGCATTCCGCATTCGC--------ATTCGCCTCGGCAGCAAGCAGAATCCG-------------------------------------------CATTTGC-------GTGTCGCGTGTGT-------------------------------------------------------------------------------------------------------------------T----------------------------------------------------TCCCTCCATCC--AGTGAGA-------------------------------AAGATATTGTATCTTGTATCTTGTACCTT------GTATACCCCCAA--------GT----GATTGTTTTGT-----------GC------------------------------------------------------------AACCCG---TACCG--GAAAATCCATCAAAATTCTGTCCTCACTGTGGACCCCAGCGTCGGCTTCGCAATTGGCGGGCGGCGCAACCAACGGCGGAGGCAGTGG------CSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCGCAACCAACGGCGGAGG.............2111.0010100000000
...................................................AGTG--------------------------------------TGTGT------------GT--------------------------G------TGTGTGCG----TGTGC-----------------------G..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2620.5010100000000
droWil2
A-TGCTCGGCTAAAATGTCTGCCTTAATGACAGAGAG--AGCGACAGGGAGAGCG--------------------------------------AGAGA------------GA--------------------------G------TAAGAGCG----AGAGA-----------------------AA---AATCT--C--GTTA----TGATTTGAACCTGGCACAGCAGGCAACTTGTCGTGCGCAGCAAAGCAT---------------------------------------------TTG------------CGTTTCAAAACCGTTTCGTACTTTGAACGGACAAGAAGGGTT-TTACC------------------------------------TTTTG---CT-------------------CCGCTACTTTTTGAAAA----------------AAGCAAAGCAAAGTGTCGTCGC-------GTGTCACGTGTCGCGTGTT-GTGAATAT-CTTG----------------ATCCGTGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTGTT------------------------------------------------------------------------------------------A--TTAAATCTATCAAAATTCTGTCCTCACTGTGGACCCCGTCACCGT---------CGGCTTGTGGTGCT---------------GCTGG------CSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................................................................................................................................................................................................................................................................................................................................................AACGGACAAGAAGGGTT-T....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000
...........................................................................................................................................................................................................A----TGATTTGAACCTGGCACAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
droVir3
A-ACG--CACGAAAATGTCTGCTA-TGCGCGCGT--------------------G--------------------------------------TGTGTG-TAT-------G---CTGGCA-----AGAGAGTGTGAGTGCGTGTGTA----------------------------------------TGC--T--GGAGA-----GA--------------------CTGACAACTTGTCGTC-G--TCGTCGTCGTCGCTGCTGCTGCT----------------GCTGCTGCCGC-----CGTCGCTGAACATGGCATTCAAAACAGTTTCGCAGCTCGAGCGAACAAGAAGGGTT-CA-GT-------------------------------TA-----------CCGTTGCACGCAAAATCT------------ATTT---------CAGCCAT----AA-----GCAACAACACGTCGC-------GTGTGT-GTTTCAAGTGTTTCTGTGTGT-G----TG----------------TG----T--GT------------GCCTGT----GTGTGTTAGTTACAGCTA---------------------------------------------------------------------------------------------------------CAGTTAAAGTTAC----------------------------------------------------------------------TTTTGCCGCTAGCAT--------------------------------------CA--GACT-TCTTCTTCCCAGA---CAAGTTG---TCACG--CAAAATCCGCCAAAATTCTGTCATCACTGTGGACCACGCCGTC------GCAGCTAGCGGGAGGCGCAAGCAGCGA------------------CSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................................................................................................................................................................................CTGCTGCT----------------GCTGCTGCCGC-----CG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000010000000000000000000000000000000000000000
droMoj3
A-CAG--CACGAAAATGTCTGCCA-AGTGTGTGT--------------------GT------G---TGTG-----------------------TGTAT-----G------AATGCTAGAG-----AGAGGGAG--TGCATGAGTATG----------------------------------------TGTGCT--AGAGA-------------------------GATTGACAACTTGTCGTGCGCGTCGTCGCTG---CTTCTGCTACTGCTGCTGCCGCCGCAG---------------CCGTCGCTGAACGTGGCATTCAAAACAGTTTCGTAGCTCGAGCGAACAAGAAGGGTT-CA-G------------------------------------------TTTCAGTAGCACGCAAAATCT------------CT-T---------CAGTCAC----AA-----GCCAAGACACGTCGC-------GTGTGT-GTTTCAAGTGCTTGTGCGTGC-GTGCATG----------------TG----T--GT------------GCTTGTGTGTGTGTGTGAATTGCAACTA--------------GCGTG-------------------------------------------------------------------------------------------ACAATTACCAATAGC----------------------------------------------------------------------------AA--------------------------------------AAATAACA-ATTATTTCTTATA---TAAGTCA---CTATA--CAAAATCCGCCAAAATTCTGTCATCACTGTGGACCACGCCGTC------GCAGCTAGCGGGAGGCGCCAGCAGCGA------------------CSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCACGCAAAATCT------------CT-...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000010
droGri2
A-GCG--CTCGAAAATGTCTGCCA-GGCGAGTGT--------------------G--------------------------------------CGTGT------------GTATTTAAGA------GAGAGAGTTTGCTTTTATGCC----------------------------------------TGT-----GTGTG----------------------TGCGTTCAGCAACTTGTCGTGCGCACCATCGAAGTCGTCGTGAACGTC----------------GCTGCTGCCAACGTC--------------CGCATTCAAAACAGTTTCGCAGCTCGAGCGAACAAGAAGGGTT-CA-ACACACACAG-------------AATTTACAGTTAGTTGCACGCTTCGCAA-------------------------------------------------AAGCACAACAA--TTTCGTCGC-------GTGTGTCTCGTCTGGTGTC-GT-------CTCG----------------TTTAATGAGT--GT------------TGTT-----GGTGTGTGAATTACAATTA---------------------------------------------------------------------------------------------------------CA-----AATTACAAATAACAAAT--------------TGCAAATT------ACAAATTACGAATTTAGCGCGC----AATTATTTTGCTGCC-GCATTTTTCTTGGGGTTGCC----------------------------------------GCTTTTGT----------------AAAAATTCGCCAAAATTCTGTCCTCATTGTGGAGCACGCCGTC------GCAGCTAGCGAACGGCG------------------ATAG------CSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
G-CGG--ACCAAAAATGTCTGCCG-GACGAGGCAGAG--A--------------GC------GGC-----GTGCGATGTATCCGTCAGTGCGCGGCCT------GCGTCTGTATCTG----------TGAGGCACTGTATCTGTATCTGTATC----------------------------------TGT---------------ACCTGGCCTGACGACGAC----TCGACAACTTGTCGTGCGA-----------------------------------------------------CA--------------CACTCTCATAACAGTTTCGCAGCTCGGGCGGACAGGAAGGGTT-CC-GG-------------------------------TAA----------CA-------------------G-AAGACCTGTGAGAA-TTA-------------------------------------------------------------------------------------------------------------------------------------------CAAAGTGCAGGCCACCA---ACGTGTTGATAAGCTCGAAAGTTCGAATAATCAGATTTTAAGACTGCCTCG-----------------CCGAAGAAA-------------------------------TAAA-AACGAAA----------------------------AC-------------------------------------AA------------------------AAACAAACC----CAAGTGAC--ACTCTTTCCGACC---AAAG---TTAAAAAG--CATAAGCCTTCAAGATTCTGTCCTCACTGTGGACCCCAGCGACGC---------TGGCAGGCGGCGCCCCCAGCGGAGGAGGAGGTGG------CSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................................................................................TATCTGTATCTGTATC----------------------------------TGT---------------AC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21150.071100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-AACGAAA----------------------------AC-------------------------------------AA------------------------AAACAAC................................................................................................................................................20200.051001000
droBip1
G-CAG--ACCAAAAATGTCTGCCG-GACGAGAGA--------------------GG--------C-----CTGCGATGTATCCGTCAGTGCGCGAG-A-CT---GCCTCTGTATCTG-TA-----TCTGTA--TGTGTATCTGTATC----------------------------------------TGT-----GAAGCACTGTATCTGGCCTGACGACGAC----TCGACAACTTGTCGTGCGG-----------------------------------------------------CA--------------CACTCTCATAACAGTTTCGCAGCTCGGGCGGACAGGAAGGGTT-CC-GG-------------------------------TAT----------CA-------------------G-AAAACCTGTGAGAA-TCAGCA----GAAAAC--------------CTCGCTGCGAGTCTAATGCGA----------------------T-----TTCAGTGCA---------------------------------CC-----------------------------------AAAGACGTGTCGATAAGCCCGAAAGTTCCAATAATCTGATTTTAAGACTGTCTCGTAATACTCTCTGCGTTCCCGAAGAAAGACTACAATACGCACAA------------------------------------------------------------------------------------------------------------------------------GC----CAAGTGAC--ACTTTTTCCGACT---GCAG---TTCT-AAG---CTAAGCCTTCAAGATTCTGTCCTCACTGTGGACCCCAGCAACGC---------TGGCAGGCGGCGCCCCCAGCGGAGGAGGAGGTGG------CSizeHit CountTotal NormTotal
No Reads
droKik1
CCGAG--ACCAAAAATGTCCGCTT-AACGAGAGA--------------------GA-------GC-CGGT-----------------------CGTCT------------GTATCTG-TA-----TCTGTG--------------------TA----TCTGCTACTGCTGGCCTGCATCTGTATC--CGT-----GAA-------AACTGGATTGACG------------ACAACTTGTCGTGTGG-----------------------------------------------------CA-----------CA-CGCTCTCACAACAGTTTCGCAGCTCGAGCGGACAAGAAGGGTT-CCA---------------------------------------TCCGTTTCGGTAA---AGAAAATCTGAGGAAAAACCTGTGAAAATTTATG-----AGAAAT--------------CACGACGCGTGTTCAGTGCGA-TTT--------ATCTGCGAGTTA----TT-AGTGAA---------------------------------CCTTT-----TGGGT----------------------------------------------------------------------------------------------------------TATAATACGTACAATTA------------------------------------------------------------------------------------------------------AGTGCCGT------------------------C-GAGACTGTTTTCGCCTTCGAAA---GT---AGAACAAA-AAATCTTCAAAATTCTCTCCTCACTGTGGACCCCGGCGACGC---------TGGCGGGCGGCGCAACCAACGGAGGAGGAGCTGG------ASizeHit CountTotal NormTotal
No Reads
droFic1
G-GGG--TCC-AAAATGTCCGCTG-AACGAGAGA--------------------GA------GAG-TCCC-----------------------GGTTT------------GCACCAGGTA-----ACTGAGAGTCTGTATCGACATCTGTGTGTGTATC----------------------------TGCGCTGTGGAGG-----AACTGGCCTGACGAC-------TCGCCAACTTGTCGGGCGG-----------------------------------------------------CA--------------CACTCTCACAACAGTTTCGCAGCTCGAGCGGACAAGAAGGGTT-CCCGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
G-AAG--TCCAAAAATGTCTGCTT-AACGAGGGAGAGAGA--------------GCAACTGCTGCCTGTG-----------------------CGCTT------------GTATCTGATA-----TCTGAAAGTTTGTATCTATATC----------------------------------------TGT-----GCAAG-----AACTGGCCTGACGAC-------TCGACAACTTGTCGGTCGG-----------------------------------------------------CA--------------CGCTCTCACAACAGTTTCGCAGCTCGAGCGGACAAGAAGGGTT-CCCGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
G-GCG--TCCAAACATGTCCGCTT-AACGAGAGA--------------------GA-ATTACGGC-TGTG-----------------------AGTTT------------GTATCTGGTA-----TCTGAGAGTTTGTATCTATATC----------------------------------------TGT-----AAAAG-----AACTGGCCTGACGAC-------TCGACAACTTGTCGGGCGG-----------------------------------------------------CA--------------CGCTCTCACAACAGTTTCGCAGCTCGAGCGGACAAGAAGGGTT-CCCGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
T-GAA-CCGCAAAAATGTCCGCTT-TGCGAGAGA--------------------G------------------------------------------T------------GTATCTG-TA-----TCTGAGCGTCTGCATCTGTATC----------------------------------------CGT-----AGAGG-----AACTGGCCTGACGACTACTCAATCGACAACTTGTCGGGCGG-----------------------------------------------------CA--------------CGCTCTCACAACAGTTTCGCAGCTCGAGCGGACAAGAAGGGTT-T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
G-AAA--TGCAAAAATGTCCGCTT-GAAGAGAGA--------------------GT------A---TGTC-----------------------CGTAT-----G------GCGTCCGTTG-----ACTGAGAGTCTGTATCTATATC----------------------------------------TGT-----A---G-----AACTCGCTTGACGACTACTCAATCGACAACTTGTCGGGCGG-----------------------------------------------------CA-------------TTGCTCTCACAACAGTTTCGCAGCTCGAGCGGACAAGAAGGGTTTCCCGG-------------------------------TGG----------CT-------------------GAAAAACCTGTGGAAAATTATCA---CAAAAAT--------------AACGACGCGATTTTAGTGCGT-GTTTCAAGTGC------G--GT-----TTAAGTGGATTTTA-ATC--GAATTTTGTGCCGAAATCTAAACCTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGGATTTTCTTCTAATAACAATAA--------GTTTTTAAACGTTTTGT-----------GC-------------------GAAGCAACCC----TAAATAAAA-ACCATTTTCGACCTCAAAA---GC---TCCA--GAGACACCTTCAAAATTCTCTCCTCACTTTGGACA---------------------------------------GGAGGAGGCGGTGGAGGAGCCSizeHit CountTotal NormTotal
No Reads
droEug1
TGAAC--TCCCAATATGTCCGCTA-AGCGAGAGA--------------------GC------AGACCGTG-----------------------CGTTT------------GTATCTGGTA-----TCTGAGAGTAAGTATCTATATC----------------------------------------TGT-----ACGAG-----AACTGGCCTGACGACTAC----TCGACAACTTGTCGGGCGG-----------------------------------------------------AA--------------CGCTCTCACAACAGTTTCGCAGCTCGAGCGGACAAGAAGGGTT-CCCGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
T-GTG--TG------------------------------------------------------------------------------------------------------------------------------TGTG------TGTGTGTG----TGTGTGAGTAGTGACTTGGATTACTTTG--GGC-----CA-------------------------------------------------------------------------------------------------------A--------------CACTC--AC------------------------------GGCA-ACAAC---AATAG-------------CAATCACAGTT-GC-AGCAGCAGCAGCAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCAGCA----------------------------GC-------------------------------------AG------------------------CGACAACTG----CAACTGCA--ACTGCATTGGCAT---AAAA---CTAAACCC--G----------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACTG----CAACTGCA--ACTGCAT.........................................................................................................................2218.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000101000000000010010000000100000000000000000000000000000000000000000000000
.................................................................................................................................................TGTGTGTG----TGTGTGAGTAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACTG----CAACTGCA--ACTGCATT........................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................GTGAGTAGTGACTTGGATTAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..................................................................................................................................................GTGTGTG----TGTGTGAGTAGTGACTTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
..................................................................................................................................................GTGTGTG----TGTGTGAGTAGTGACTTGGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
.......................................................................................................................................................................................TG--GGC-----CA-------------------------------------------------------------------------------------------------------A--------------CACTC--AC------------------------------GGCA-AC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------------------CGACAACTG----CAACTGCA--ACTG............................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACAACTG----CAACTGCA--ACTGC...........................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................TG------TGTGTGTG----TGTGTGAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000001000000000000000000000000000000000000020
....G--TG------------------------------------------------------------------------------------------------------------------------------TGTG------TGTGTGTG----TGTGTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCAGCA----------------------------GC-------------------------------------.................................................................................................................................................................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......TG------------------------------------------------------------------------------------------------------------------------------TGTG------TGTGTGTG----TGTGTGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................CAGTT-GC-AGCAGCAGCAGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................CAGTT-GC-AGCAGCAGCAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCAGCA----------------------------GC-------------------------------------AG------------------------CGT....................................................................................................................................................22150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCAGCA----------------------------GC-------------------------------------A................................................................................................................................................................................23180.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCAGCA----------------------------GC-------------------------------------.................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCAGCA----------------------------........................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
T-GTG--TG------------------------------------------------------------------------------------------------------------------------------TGTG------TGTGTGTG----TGTGTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
..GTG--TG------------------------------------------------------------------------------------------------------------------------------TGTG------TGTGTGTG----TGTGTGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.......TG------------------------------------------------------------------------------------------------------------------------------TGTG------TGTGTGTG----TGTGTGAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCAGCA----------------------------GC-------------------------------------A................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................TG------TGTGTGTG----TGTGTGAGTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
....G--TG------------------------------------------------------------------------------------------------------------------------------TGTG------TGTGTGTG----TGTGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCAGCA----------------------------........................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................TGTGTGTG----TGTGTGAGTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
......................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCAGCA----------------------------GC-------------------------------------.................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................C-AGCAGCAGCAGCAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCAGC.....................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
A-ACG--TCGAAAAATGTCCGCTA-AACGAGAGA--------------------GC------AGA-TGTG-----------------------AGTTT------------GTATCTGGCA-----TCTGAGAGTCTGTATCTATATC----------------------------------------TGT-----CGAGG-----AACTGGCCTAACGACTACTCAATCGACAACTTGTCGGGCGG-----------------------------------------------------AA--------------CGCTCTCACAACACTTTCGCAGCTCGAGCGGACAAGAAGGGTT-CCCGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................................................................................................................................................................................................................................GCGGACAAGAAGGGTT-CC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
................................................................................................................................................................................................................................................................................................................................................GCTCGAGCGGACAAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.50110000000000000000
droSec2
A-ACG--TCGAAAAATGTCCGCTA-AACGAGAGA--------------------GC------AGA-TGTG-----------------------AGTTT------------GTATCTGGCATAGTGTCTGAGAGTCTGTATCTATATC----------------------------------------TGT-----CGAGC-----AACTGGCCTAACGACTACTCAGTCGACAACTTGTCGGGCGG-----------------------------------------------------AA--------------CGCTCTCACAACACTTTCGCAGCTCGAGCGGACAAGAAGGGTT-CCCGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................................................................................................................................................................................................................................................................................CGCAGCTCGAGCGGACAAGAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
..................................................................................................................................................................................................................................................................................................................................................TCGAGCGGACAAGAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001
...............................................................................................................................................................................................................................................................................................................................................AGCTCGAGCGGACAAGAAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
droYak3
A-AAG--TCGAAAAATGTCCGCTT-AGCGAGAGA--------------------GC------AGA-TGTG-----------------------AGTTT------------GTATCTGGCA-----TCTGAGAGCGTGTATCTATATC----------------------------------------TGT-----CGAGG-----AACTGGCCTAACGACTACTCAATCGACAACTTGTCGGGCGG-----------------------------------------------------AA--------------CGCTCTCACAACACTTTCGCAGCTCGAGCGGACAAGAAGGGTT-CCCGG-------------------------------TGG----------CT-------------------G-CAAACCTGTGGAAAAATATTAAATTAT-CAT--------------CACGACGCGATTGCAGTGCGT-GTTTCTAGTGC------G--GT-----TT-AGTGGACTTGGCATC--GAT---------------------------------TAAATC------------ACACCA---GCGTC----------------------------------------------------TTATTCAATCC--AGTGAAA-------------------------------GAAA-AACGTAGACTTTATATTGTGGATT-----------ACAAAAA--------ATTTAAAAGCGTTCTGT-----------GCTTCAAAAGTGCCGCTTCTCAAAACAGCAGTGGGAAA----GAGACATTTTCCTAC-TCGAAA---GT---TTCA--TAGACTTCTTCAAAATTCTCTCCTCACTGTGGACCCCT------------------------------------GGAGGAGGCGGTGG-------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAATTAT-CAT--------------CACGACGCGATTGCAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100100000000
................................................................................................................................................................................................................................................................................................................................................GCTCGAGCGGACAAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100001000000
.................................................................................................................................................................................................................................................................................................................................................CTCGAGCGGACAAGAAGGGTT-CCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000
droEre2
A-AAG--TCGAAAAATGTCCGCTT-AACGAGAGA--------------------GC------AGA-TGTG-----------------------AGTTT------------GTATCTGGCA-----TCTGAGAGCATGTAGCTATATC----------------------------------------TGT-----CGAGG-----AACTGGCCTAACGACTACTCAATCGACAACTTGTCGGGCGG-----------------------------------------------------AA--------------CGCTCTCACAACACTTTCGCAGCTCGAGCGGACAAGAAGGGTT-CCCGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 06/08/2015 at 02:52 PM