dpe_517

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## AGCACTTTGTAGTCCTCAGCTAACCGTCTGAAAAATTGATTATATTTTTTAGGTTTTTGTTTACAAAATTTTCACTTTAAAAACTTGAGAAAAGTGAAAATGTTTCCTTGTGTTTTTATATTTTATTTTTGAATTTTGAATCAACCAAATTAGTTAAGAAACTCATTTTAATCTTCAATCTTTTTTCAATTAATATTTTAGGAATTGCTATAAATCTAATAACTTACGAGGATCGCTTTGATCTTCATCGG ************************************************..................((......((((....((((((((((..............((.((((((..(((..((((((((........))))..)))).)))..)))))).))..............))))))))))))))......))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M021 embryo	V042 embryo
.........................................................................................................................................................................................................................................CGCTTTGATCTTCATCGG	18	0	1	11.00	11	11	0
............................................................................................................................................................................................................................AACTTACGAGGATCGCTTTGAT.........	22	0	1	1.00	1	1	0
........................................................................................................................................................................................................................TAATAACTTACGAGGATCGCTTTGAT.........	26	0	1	1.00	1	1	0
.......................................................................................................................................................................................................................TTATTAACTTACGAGGATCT................	20	3	11	0.09	1	0	1

TCGTGAAACATCAGGAGTCGATTGGCAGACTTTTTAACTAATATAAAAAATCCAAAAACAAATGTTTTAAAAGTGAAATTTTTGAACTCTTTTCACTTTTACAAAGGAACACAAAAATATAAAATAAAAACTTAAAACTTAGTTGGTTTAATCAATTCTTTGAGTAAAATTAGAAGTTAGAAAAAAGTTAATTATAAAATCCTTAACGATATTTAGATTATTGAATGCTCCTAGCGAAACTAGAAGTAGCC ************************************************..................((......((((....((((((((((..............((.((((((..(((..((((((((........))))..)))).)))..)))))).))..............))))))))))))))......))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M021 embryo
.....................................................................................................................................................................AAAATCAGAAGTTAGCAAAA..................................................................	20	2	3	0.33	1	1
.....................................................................................................................................................................AAAATCAGAAGTTAGCAAA...................................................................	19	2	7	0.29	2	2

Species	Coordinate	ID	Alignment
droPer2	scaffold_1:1366997-1367247 +	dpe_517	AGCACTTTGTAGTCCT-CAGCTAACCGTCTGAAA----------------AATTGATTA-----------------------------TATTTTTTAGGTTTTTGTTTACAAA------------------AT----------TTTC-------ACTT---------------TA---------AAAACTTGAGAAA----------------------------------------------------------------------------------AGTGAAAATGTTT--------------CCTTGTGTTTTTATATTTTATTTTTGAATTTTGAATCAAC-------------------------------------------------CAAATTAGT---------TA-------------------------AGAAAC-----------------------------------------------------------TCATTT-----------------------------------TAATCTTCAATCTTTTTTCAATT----AATATTTTAG---------------------------------------------------G------------------------------AATTGCTATAAATCTAATAACTTACGAGGATCGCTTTGATCTTCATCGG
dp5	Unknown_group_796:560-810 +		AGCACTTTGTAGTCCT-CAGCTAACCGTCTGAAA----------------AATTGATTA-----------------------------TATTTTTTAGGTTTTTGTTTACAAA------------------AT----------TTTC-------ACTT---------------TA---------AAAACTTGAGAAA----------------------------------------------------------------------------------AGTGAAAATGTTT--------------CCTTGTGTTTTTATATTTTATTTTTGAATTTTGAATCAAC-------------------------------------------------CCAATTAGT---------TA-------------------------AGAAAC-----------------------------------------------------------TCATTT-----------------------------------TAATCTTCAATCTTTTTTCAATT----AATATTTTAG---------------------------------------------------G------------------------------AATTGCTATAAATCTAATAACTTACGAGGATCGCTTTGATCTTCATCGG
droWil2	scf2_1100000004521:3971154-3971325 -		AATTCTTTCT-----T-TAAG-------------AATAAA---------------------------------------------------------------------------------ATTT-------------------------------------------------------------AGCTTTAGGAAAGAGGAAATAATTTTACATTTTATATA------------------------------------------------------------------------TTTTGT--------TTAACTGTAGATTTGGTTTTTGAATATTGTAAAATC-------------------------------------------------CAAATTAGC---------TC-------------------------AGA--------------------------------------------------------------TCATTG-----------------------------------AAAGTACCTATCATTTA-----T----TATGTGTCAG---------------------------------------------------T------------------------------TCTTCCTGTAGATTGAA-------------------------------T
droVir3	scaffold_12958:63577-63770 +		AAATTGACTA-----T-------------------------------------------------------------------------ACTTTTTCGTTTTTTTTTTATGTT------------------AA----------TATT-------AATTTATGCTAAGAA-TATTT---------GGAATTTGTTAAA----------------------------------------------------------------------------------AATGCATACTATAAATGTATTTATTAACGTCATTTATGTAAATTCATATTGTTAATTTTACTTTAAC-------------------------------------------------CTAAGATGA---------TT-------------------------TGAAAC---------------TGCAT-------TCAAAATGTATTTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTTAATTTCAACTAA
droMoj3	scaffold_6441:87833-87931 +		TCCTTTTATT-----TATT------TA-------TTTTAAT---------TTTTTTTTTTTT---------------------------------------------------------------------------------------------------------------TTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATTA-----------------------------------TTATTATTTTTTTATTTTTTATT----ATTATTTTAA---------------------------------------------------G------------------------------AATTATTTTAAGTAT-----------------------------GCTAA
droGri2	scaffold_15126:1585496-1585573 -		CTTATATATA-----T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-----------------------------------------------------CCTGT----TATTTTTCAG---------------------------------------------------G------------------------------TATTGCTATAAATTTAATAACCTACGAGGATCGGTTTGATCTGCATCGC
droAna3	scaffold_13260:2036115-2036232 +		TTGACAAAAA-----T--------------------------------------------------------------------------------------------------------------------------------GAA-------AATT---------------TT---------AAAACTTGACAAA----------------------------------------------------------------------------------AATGAAAATTTTA---------------------------AAACTCATC-------------------------------------------------------------------TT-------------------------------------------------TTAGAATTTTGAAAAAACTTTTAGTTTTTGAAACATTTAAGTGTTCTG----T-TTAACTCATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT
droBip1	scf7180000396821:6908-7020 -		CTTAAAACTT-----T---------------------------------------ACTT-----------------------------TGCATTTTAAGATTTCGTTTTT---------------------TT----------TTTT-------AAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATAAATCATATATTTTATTT-----------------------------------TTATTGTTTGTTTTTGCTTCTTT----ATTAAA-----------------------------------------------------------------------------------------------------------------------TTTTGAATCAAATAAA
droKik1	scf7180000302401:598391-598605 -		AGGGTATTATAATTTC---------AGTCAGAAG----------------CATT-TTTG--------------------------GCCTATTTGTTAATTTTTTACTTCTTAA------------------TA----------TATA-------ATTT---------------TT---------AAAATGCAAAGGA----------------------------------------------------------------------------------GGTGCCAAAGTTG--------------GCTTCTTTTCTTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAA-------AAACCTATTTTTTAACAATTCCCCTAAAATGGGAATAAATAATGAAACTATTAAATTTTTTGTTAAAT----ATTATTCTAA---------------------------------------------------A------------------------------AATA--TCTAAATTT-----------------------------AAAAA
droFic1	scf7180000453838:470027-470148 +		TCATTTGGGT--------------------------------------------------------------------------------------------------------------ATGTAAA-------------------------------------------------------------CTTAATAGA----------------------------------------------------------------------------------ATTTAA--------------------------------------------------------------------------------------------------------------------------------------------GAATTT---------------------------------------------------------------------------C--TT-----------------------------------TAATGTTTAATCTTGTTTTATTT----A-T-TTAAAG---------------------------------------------------G------------------------------TATTGCTATTAATCTGATAACGTACGAGGATCGCTTTGACCTGCATCGA
droEle1	scf7180000490971:102881-103036 -		TTTGCTTTCT-----T------------------------------------------------------------------------------------------------TCTTGTTGTTTTAAA-----------------------------------------------------------CTTTTATAAGA----------------------------------------------------------------------------------AATGAAGA-------------------------------ATGTTTTATTTCGCAATTTTGTTTGACA-------------------------------------------------CAAATTAAA---------AA-------------------------AAACTT-----------------------------------------------------------TTATTT-----------------------------------CAGCTTTCAATTTATTTTACATT----AAA----------------------------------------------------------------------------TGTTTTTTATTAAAA----------------------------TTATTCAAAATCGTAATAA
droRho1	scf7180000767504:21835-21989 -		TAATTATATG-----A----------------TA----------------AATTGTTTA--------------------------------------ATTTTTTG------------GTCTCACAAA----AT----------TAT--------------------------------------TAGATTTAAGAAA----------------------------------------------------------------------------------AGAGAATTTTTCT--------------ACTCTAGTTAATAGAAGATATTTTAGAATTTTGATTCAAT-------------------------------------------------AATTTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGTGAACCTAAATTAAATTTTCATTCCAGTTACAA
droBia1	scf7180000301468:369087-369231 +		AAGTAAAACT-----A---------TG-------ATTTAACATATCATTG--------------------------------------------------------------------------------------------TTT------------------------CC-----------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCAAAGTTTTAATCGACCTGTTTCTA------------------------------------------ACTTTGT---------TA-------------------------TG---T-----------------------------------------------------------TCATTT-----------------------------------CG------------------ATC----TAC-TTTAAG---------------------------------------------------G------------------------------TATTGCTATAAATCTGATAACCTACGAGGATCGGTTCGACCTGCATAGG
droTak1	scf7180000415383:57659-57872 +		TTTTAGTTAT-----T---------TG-------ATTTAAT---------ATTTTT------------------CACAAAACCTAAGC--------------------------------A---------------------TAT------------------------GTTTTTGATAATTTCCA--TT-----------------------AA---------------------------------------------------------------------------------------------------------------TT-------------------------------------------------------------------TT-------------------------------------------------TTATAATTCTGTGAATCTTCCAAGTACTTAATGTATTTATGAGCTCTT----A-AAAAATTATTT-----------------------------------TAATCAAAAGTTAAATTTCCATT----AATATTTAAG---------------------------------------------------GATTTATCATGCTTTTATCAATT----------------------------TTTAAGAAGAACGTGCTAATTTCTTTTAG
droEug1	scf7180000409466:4568153-4568320 -		TCTTTTTGAA-----TATT------GATTAAAAA----------------GTGTGATTAATTTTGAATATTCTTGCAAAAATTCAAGTTTTATATTAACTTTATATTGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTAGAAAATT---------------------------------------------------------------------------------------------------------------------------------------------------TTTGAGTTAGACCTTATTAAACCTATTT-----------------------------------TTCCCATAAGTTGTTCTTTAGGT----ACTATCTTAG---------------------------------------------------G------------------------------AATCA--------------------------------------TTATGA
dm3	chr3L:11824077-11824238 +		TTTGTAATTT--------AACTATCGATTTTAAA----------------ATATTTTTA----------------------------------------------------------------------------------------------------------------------------------------------------------AATTTTTTTTATTTGTTTTGGTTTTCTAGTTTTTTAAATTCTTTATCAATTTTAAAACTTTTTTGGTTTTAA--------------------------------------------------------------------------------------------------------------------------------------------TTTTTTTTTTAGTTTTTAAAC-----------------------------------------------------------TTATTT-----------------------------------TAATTTTTAATCTTTTA--------------------------------------------------------------------------------------------------------------------------------------------TTTACTAACGT
droSim2	2l:9919601-9919656 +		TTTAAGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTGCTATTAATTTGATAACCTACGAGGATCGGTTTGATCTGCATCGG
droSec2	scaffold_11:2631311-2631416 -		ATTTTACATT-----T-----------------------------CATTT--------------------------------------------------------------------------------------------TTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCAAAC-------------------------------------------------AAGAATGGT---------CA-------------------------CCTAAA-----------------------------------------------------------TGAGTT-----------------------------------ACCTTTGCAATTTTTGTTTTATT----AATATTT-AG---------------------------------------------------G---------------------------A--AA-T---AATAATTTTAGACCT----------------------TGCGA
droYak3	v2_chrUn_3391:17065-17239 -		TTGTTATATT-----T-TTAG-------------CTTCAAT---------TT-------------------------------------------------------------------------------------------TATCAAAAAAAGCTT---------------TA---------ATCGACCGAGAAA----------------------------------------------------------------------------------AAAGATCA-------------------CCTTTTGAATGTGGGTTTGATCCTAAATCTTCTTC-------------------------------------------------------TCGATTACCATTTTCATTA---------CGATTTT-----------------------------------------------------------------------------TTT-----------------------------------TAATCACTATTATTTTTTTAATT----TTTGATGTAG---------------------------------------------------A------------------------------AATTGCTTTAATTCT----------------------------------
droEre2	scaffold_4929:12148158-12148423 -		TGTTCCTAGG-----C----------------TG-----------------------------------------------------------------------------------AAGTTCTAAACTCAATAACTCAACTTAT------------------------CT-----------------------------------------------------------------------------------------------------------------------------------------------------------TAATCGGATTTTTAAGTGGCATACCTCTAAATGTTTCTGACGCAATTCTCTAAAAATCTGCATTCAAATTTAGAAAAT---------TATTTTTGTTAAATTTTT-----------------------------------------------------------------------------------------------------------------------TTGTAATTTTTTTTTGATATGATAATGTTG-AAGAAATTCAAAACAATTGAGAAATGTCCCAAGGCCGAAGTTCTAAACTTCATAACTCAACTTATCTTAATCGGAT-------------T--------------TTTAAGT---------GGCATACCTCTAA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droPer2

AGCACTTTGTAGTCCT-CAGCTAACCGTCTGAAA----------------AATTGATTA-----------------------------TATTTTTTAGGTTTTTGTTTACAAA------------------AT----------TTTC-------ACTT---------------TA---------AAAACTTGAGAAA----------------------------------------------------------------------------------AGTGAAAATGTTT--------------CCTTGTGTTTTTATATTTTATTTTTGAATTTTGAATCAAC-------------------------------------------------CAAATTAGT---------TA-------------------------AGAAAC-----------------------------------------------------------TCATTT-----------------------------------TAATCTTCAATCTTTTTTCAATT----AATATTTTAG---------------------------------------------------G------------------------------AATTGCTATAAATCTAATAACTTACGAGGATCGCTTTGATCTTCATCGG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTTTGATCTTCATCGG	18	1	11.00	11	11	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTACGAGGATCGCTTTGAT.........	22	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATAACTTACGAGGATCGCTTTGAT.........	26	1	1.00	1	1	0	0	0	0	0

dp5

AGCACTTTGTAGTCCT-CAGCTAACCGTCTGAAA----------------AATTGATTA-----------------------------TATTTTTTAGGTTTTTGTTTACAAA------------------AT----------TTTC-------ACTT---------------TA---------AAAACTTGAGAAA----------------------------------------------------------------------------------AGTGAAAATGTTT--------------CCTTGTGTTTTTATATTTTATTTTTGAATTTTGAATCAAC-------------------------------------------------CCAATTAGT---------TA-------------------------AGAAAC-----------------------------------------------------------TCATTT-----------------------------------TAATCTTCAATCTTTTTTCAATT----AATATTTTAG---------------------------------------------------G------------------------------AATTGCTATAAATCTAATAACTTACGAGGATCGCTTTGATCTTCATCGG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAGGATCGCTTTGATCTTCATC..	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTTTGATCTTCATCGG	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAACTTACGAGGATCGCTTT............	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTACGAGGATCGCTTTGAT.........	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droWil2

AATTCTTTCT-----T-TAAG-------------AATAAA---------------------------------------------------------------------------------ATTT-------------------------------------------------------------AGCTTTAGGAAAGAGGAAATAATTTTACATTTTATATA------------------------------------------------------------------------TTTTGT--------TTAACTGTAGATTTGGTTTTTGAATATTGTAAAATC-------------------------------------------------CAAATTAGC---------TC-------------------------AGA--------------------------------------------------------------TCATTG-----------------------------------AAAGTACCTATCATTTA-----T----TATGTGTCAG---------------------------------------------------T------------------------------TCTTCCTGTAGATTGAA-------------------------------T	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

droVir3

AAATTGACTA-----T-------------------------------------------------------------------------ACTTTTTCGTTTTTTTTTTATGTT------------------AA----------TATT-------AATTTATGCTAAGAA-TATTT---------GGAATTTGTTAAA----------------------------------------------------------------------------------AATGCATACTATAAATGTATTTATTAACGTCATTTATGTAAATTCATATTGTTAATTTTACTTTAAC-------------------------------------------------CTAAGATGA---------TT-------------------------TGAAAC---------------TGCAT-------TCAAAATGTATTTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTTAATTTCAACTAA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................GATGA---------TT-------------------------TGAAAC---------------TGCAT-------TCAAAATGT........................................................................................................................................................................................................................................	27	10	5.80	58	0	0	1	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	4	5	20	5	2	0	1	3	3	0	1	4	3	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................TTAAC-------------------------------------------------CTAAGATGA---------TT-------------------------TGAAAC---------------TGCA.........................................................................................................................................................................................................................................................	26	12	4.08	49	0	0	49	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................GATGA---------TT-------------------------TGAAAC---------------TGCAT-------TCAAAATG.........................................................................................................................................................................................................................................	26	10	2.90	29	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	7	5	0	1	0	4	0	0	0	0	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................TTAAC-------------------------------------------------CTAAGATGA---------TT-------------------------TGAAAC---------------TGCAT-------.................................................................................................................................................................................................................................................	27	12	2.75	33	1	0	28	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................GATGA---------TT-------------------------TGAAAC---------------TGCAT-------TCAAA............................................................................................................................................................................................................................................	23	12	2.25	27	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	2	6	2	0	0	1	2	3	0	1	2	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................TATGCTAAGAA-TATTT---------GGAATTTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	10	1.90	19	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	6	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................TTAAC-------------------------------------------------CTAAGATGA---------TT-------------------------TGAAAC---------------TGC..........................................................................................................................................................................................................................................................	25	12	1.67	20	0	0	16	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................GATGA---------TT-------------------------TGAAAC---------------TGCAT-------TCAAAAT..........................................................................................................................................................................................................................................	25	11	1.36	15	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	1	1	3	0	0	2	0	0	0	1	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................TATGCTAAGAA-TATTT---------GGAATTTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	9	1.33	12	0	0	0	0	0	0	0	0	1	2	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................GATGA---------TT-------------------------TGAAAC---------------TGCAT-------TCAAAA...........................................................................................................................................................................................................................................	24	12	1.25	15	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	4	3	1	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................GATGA---------TT-------------------------TGAAAC---------------TGCAT-------TCAA.............................................................................................................................................................................................................................................	22	12	0.75	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	3	0	0	0	1	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................AATTTGTTAAA----------------------------------------------------------------------------------AATGCATACTATAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................	25	7	0.71	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................TATGCTAAGAA-TATTT---------GGAATTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	10	0.70	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................A-TATTT---------GGAATTTGTTAAA----------------------------------------------------------------------------------AATGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................	24	9	0.67	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	4	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................TATGCTAAGAA-TATTT---------GGAATTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	10	0.60	6	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	3	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................ATATTGTTAATTTTACTTTAAC-------------------------------------------------CTAAG..........................................................................................................................................................................................................................................................................................................................	27	12	0.58	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................TAAC-------------------------------------------------CTAAGATGA---------TT-------------------------TGAAAC---------------TGCA.........................................................................................................................................................................................................................................................	25	12	0.58	7	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................GATGA---------TT-------------------------TGAAAC---------------TGCAT-------TCA..............................................................................................................................................................................................................................................	21	12	0.58	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	1	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................TAAGATGA---------TT-------------------------TGAAAC---------------TGCAT-------TCAAAA...........................................................................................................................................................................................................................................	27	12	0.58	7	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................A-TATTT---------GGAATTTGTTAAA----------------------------------------------------------------------------------AATGCATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................	27	9	0.56	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................TAAGATGA---------TT-------------------------TGAAAC---------------TGCAT-------TCAAAATG.........................................................................................................................................................................................................................................	29	10	0.50	5	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................TTAAC-------------------------------------------------CTAAGATGA---------TT-------------------------TGAAAC---------------TGCAT-------TC...............................................................................................................................................................................................................................................	29	12	0.42	5	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................TATGCTAAGAA-TATTT---------GGAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	10	0.40	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................TATGCTAAGAA-TATTT---------GGAATTTGTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	10	0.40	4	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................T---------GGAATTTGTTAAA----------------------------------------------------------------------------------AATGCATACTAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................	26	6	0.33	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................GATGA---------TT-------------------------TGAAAC---------------TGCAT-------T................................................................................................................................................................................................................................................	19	12	0.33	4	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................ATGCTAAGAA-TATTT---------GGAATTTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	9	0.33	3	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................TAAC-------------------------------------------------CTAAGATGA---------TT-------------------------TGAAAC---------------TGCAT-------.................................................................................................................................................................................................................................................	26	12	0.33	4	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................TACTTTAAC-------------------------------------------------CTAAGATGA---------TT-------------------------TGAAAC---------------T............................................................................................................................................................................................................................................................	27	12	0.25	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................TTTAAC-------------------------------------------------CTAAGATGA---------TT-------------------------TGAAAC---------------TGCA.........................................................................................................................................................................................................................................................	27	12	0.25	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................ATATTGTTAATTTTACTTTAAC-------------------------------------------------CTA............................................................................................................................................................................................................................................................................................................................	25	13	0.23	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................TTT---------GGAATTTGTTAAA----------------------------------------------------------------------------------AATGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................	21	9	0.22	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................A-TATTT---------GGAATTTGTTAAA----------------------------------------------------------------------------------AATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................	23	9	0.22	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................A-TATTT---------GGAATTTGTTAAA----------------------------------------------------------------------------------AATGCAA............................................................................................................................................................................................................................................................................................................................................................................................................................................	26	9	0.22	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................TGCTAAGAA-TATTT---------GGAATTTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	9	0.22	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................ATGCTAAGAA-TATTT---------GGAATTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	10	0.20	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................TATGCTAAGAA-TATTT---------GGAATT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	10	0.20	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................ATGCTAAGAA-TATTT---------GGAATTTGTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	10	0.20	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................ATGCTAAGAA-TATTT---------GGAATTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	10	0.20	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................ATGCTAAGAA-TATTT---------GGAATTTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	10	0.20	2	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................T---------GGAATTTGTTAAA----------------------------------------------------------------------------------AATGCATAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................	23	11	0.18	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................TAAGATGA---------TT-------------------------TGAAAC---------------TGCAT-------TCAAAAT..........................................................................................................................................................................................................................................	28	11	0.18	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................T-------------------------TGAAAC---------------TGCAT-------TCAAAATGTATTTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG...............	28	11	0.18	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................T---------GGAATTTGTTAAA----------------------------------------------------------------------------------AATGCATACTATAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................	29	6	0.17	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................TAAC-------------------------------------------------CTAAGATGA---------TT-------------------------TGAAAC---------------TGC..........................................................................................................................................................................................................................................................	24	12	0.17	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................ATATTGTTAATTTTACTTTAAC-------------------------------------------------CTAAGA.........................................................................................................................................................................................................................................................................................................................	28	12	0.17	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................TTAAC-------------------------------------------------CTAAGATGA---------TT-------------------------TGAAAC---------------TG...........................................................................................................................................................................................................................................................	24	12	0.17	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................AATTTGTTAAA----------------------------------------------------------------------------------AATGCATAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................	20	12	0.17	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................TAAGATGA---------TT-------------------------TGAAAC---------------TGCAT-------TCAAA............................................................................................................................................................................................................................................	26	12	0.17	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................TAAGATGA---------TT-------------------------TGAAAC---------------TGCAT-------TCA..............................................................................................................................................................................................................................................	24	12	0.17	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................AAGATGA---------TT-------------------------TGAAAC---------------TGCAT-------.................................................................................................................................................................................................................................................	20	12	0.17	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................TTAAC-------------------------------------------------CTAAGATGA---------TT-------------------------TGAAAC---------------TGCAC-------.................................................................................................................................................................................................................................................	27	12	0.17	2	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................GATGA---------TT-------------------------TGAAAC---------------TGCAT-------TC...............................................................................................................................................................................................................................................	20	12	0.17	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................AATTTGTTAAA----------------------------------------------------------------------------------AATGCATACTATA......................................................................................................................................................................................................................................................................................................................................................................................................................................	24	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................GAATTTGTTAAA----------------------------------------------------------------------------------AATGCATACTAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................	24	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................T---------GGAATTTGTTAAA----------------------------------------------------------------------------------AATGCATACTATTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................	28	7	0.14	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................TAACGTCATTTATGTAAATTCATATTGT...............................................................................................................................................................................................................................................................................................................................................................................................	28	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................AATTTGTTAAA----------------------------------------------------------------------------------AATGCATACTATAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................	26	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................TAAA----------------------------------------------------------------------------------AATGCATACTATAAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................	21	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................TAACGTCATTTATGTAAATTCATATTG................................................................................................................................................................................................................................................................................................................................................................................................	27	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................TTATGTT------------------AA----------TATT-------AATTTATGCTAAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................ACGTCATTTATGTAAATTCATATTGT...............................................................................................................................................................................................................................................................................................................................................................................................	26	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................ACGTCATTTATGTAAATTCATATTG................................................................................................................................................................................................................................................................................................................................................................................................	25	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................GCTAAGAA-TATTT---------GGAATTTGTTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	9	0.11	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................TATGCTAAGAA-TATTT---------GGAATTTGTTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................A-TATTT---------GGAATTTGTTAAA----------------------------------------------------------------------------------AATGCAT............................................................................................................................................................................................................................................................................................................................................................................................................................................	26	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TATTT---------GGAATTTGTTAAA----------------------------------------------------------------------------------AATGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................	23	9	0.11	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................TAAGAA-TATTT---------GGAATTTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................GCTAAGAA-TATTT---------GGAATTTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	9	0.11	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................A-TATTT---------GGAATTTGTTAAA----------------------------------------------------------------------------------AATGCATAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................	28	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................AA-TATTT---------GGAATTTGTTAAA----------------------------------------------------------------------------------AATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................	24	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................TATGCTAAGAA-TATTT---------GGAATTTGTTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................A-TATTT---------GGAATTTGTTAAA----------------------------------------------------------------------------------AATGCATAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................	28	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................TTT---------GGAATTTGTTAAA----------------------------------------------------------------------------------AATGCAT............................................................................................................................................................................................................................................................................................................................................................................................................................................	23	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................GTT------------------AA----------TATT-------AATTTATGCTAAGAA-TAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................TATGCTAAGAA-TATTT---------GGAATTTGTTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................GCTAAGAA-TATTT---------GGAATTTGTTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................TGCTAAGAA-TATTT---------GGAATTTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................CTAAGAA-TATTT---------GGAATTTGTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	10	0.10	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................TTATGCTAAGAA-TATTT---------GGAATTTGTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................GATGA---------TT-------------------------TGAAAC---------------TGCAT-------TCAAAATGTC.......................................................................................................................................................................................................................................	28	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................TTTATGCTAAGAA-TATTT---------GGAATTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	10	0.10	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................TTATGCTAAGAA-TATTT---------GGAATTTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................GATGA---------TT-------------------------TGAAAC---------------TGCAT-------TCAAAATGTA.......................................................................................................................................................................................................................................	28	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................T---------GGAATTTGTTAAA----------------------------------------------------------------------------------AATGCATACT.........................................................................................................................................................................................................................................................................................................................................................................................................................................	24	11	0.09	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................TTTATGTAAATTCATATTGTTAATT..........................................................................................................................................................................................................................................................................................................................................................................................	25	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................TT-------------------------TGAAAC---------------TGCAT-------TCAAAATGTATTT....................................................................................................................................................................................................................................	26	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................AAGATGA---------TT-------------------------TGAAAC---------------TGCAT-------TCAAAAT..........................................................................................................................................................................................................................................	27	11	0.09	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................TATGTAAATTCATATTGTTAATTTTAC......................................................................................................................................................................................................................................................................................................................................................................................	27	11	0.09	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................ATGA---------TT-------------------------TGAAAC---------------TGCAT-------TCAAAATG.........................................................................................................................................................................................................................................	25	11	0.09	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................TTATGTAAATTCATATTGTTAATT..........................................................................................................................................................................................................................................................................................................................................................................................	24	11	0.09	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................T---------GGAATTTGTTAAA----------------------------------------------------------------------------------AATGCATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................	22	11	0.09	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................TTATGTAAATTCATATTGTTAATTTT........................................................................................................................................................................................................................................................................................................................................................................................	26	11	0.09	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................T---------GGAATTTGTTAAA----------------------------------------------------------------------------------AATGCATACTC........................................................................................................................................................................................................................................................................................................................................................................................................................................	25	11	0.09	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................TAAGATGA---------TT-------------------------TGAAAC---------------TGCAT-------T................................................................................................................................................................................................................................................	22	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................GATGA---------TT-------------------------TGAAAC---------------TGCAT-------TCGT.............................................................................................................................................................................................................................................	22	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................TAAGATGA---------TT-------------------------TGAAAC---------------TGCAT-------TCAA.............................................................................................................................................................................................................................................	25	12	0.08	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................TTACTTTAAC-------------------------------------------------CTAAGATGA---------TT-------------------------TGAAAC---------------T............................................................................................................................................................................................................................................................	28	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................AAC-------------------------------------------------CTAAGATGA---------TT-------------------------TGAAAC---------------TGCAT-------TC...............................................................................................................................................................................................................................................	27	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................TAAC-------------------------------------------------CTAAGATGA---------TT-------------------------TGAAAC---------------TGCAT-------TC...............................................................................................................................................................................................................................................	28	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................CTTTAAC-------------------------------------------------CTAAGATGA---------TT-------------------------TGA...............................................................................................................................................................................................................................................................................	21	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................GATGA---------TT-------------------------TGAAAC---------------TGCAT-------.................................................................................................................................................................................................................................................	18	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................AAC-------------------------------------------------CTAAGATGA---------TT-------------------------TGAAAC---------------TGCA.........................................................................................................................................................................................................................................................	24	12	0.08	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................C-------------------------------------------------CTAAGATGA---------TT-------------------------TGAAAC---------------TGCAT-------.................................................................................................................................................................................................................................................	23	12	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................GATGA---------TT-------------------------TGAAAC---------------TGCAT-------C................................................................................................................................................................................................................................................	19	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................AATTTGTTAAA----------------------------------------------------------------------------------AATGCATACTA........................................................................................................................................................................................................................................................................................................................................................................................................................................	22	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................GATGA---------TT-------------------------TGAAAC---------------TGCAT-------TCAAT............................................................................................................................................................................................................................................	23	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................ATATTGTTAATTTTACTTTAAC-------------------------------------------------CTAAGAT........................................................................................................................................................................................................................................................................................................................	29	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................TTAAC-------------------------------------------------CTAAGATGA---------TT-------------------------TGAAA.............................................................................................................................................................................................................................................................................	21	12	0.08	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................TAAGATGA---------TT-------------------------TGAAAC---------------TGCAT-------.................................................................................................................................................................................................................................................	21	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................C-------------------------------------------------CTAAGATGA---------TT-------------------------TGAAAC---------------TGCA.........................................................................................................................................................................................................................................................	22	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................TTTAAC-------------------------------------------------CTAAGATGA---------TT-------------------------TGAAAC---------------TGCAT-------.................................................................................................................................................................................................................................................	28	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................GAATTTGTTAAA----------------------------------------------------------------------------------AATGCATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................	20	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................TTTACTTTAAC-------------------------------------------------CTAAGATGA---------T............................................................................................................................................................................................................................................................................................................	21	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................AAGATGA---------TT-------------------------TGAAAC---------------TGCAT-------TCAAAA...........................................................................................................................................................................................................................................	26	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................TT-------------------------TGAAAC---------------TGCAT-------TCAAAAT..........................................................................................................................................................................................................................................	20	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................TTTTACTTTAAC-------------------------------------------------CTAAGATGA---------TT-------------------------TGAAA.............................................................................................................................................................................................................................................................................	28	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................ATATTGTTAATTTTACTTTAA.................................................................................................................................................................................................................................................................................................................................................................................	21	13	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................TGA---------TT-------------------------TGAAAC---------------TGCAT-------TCT..............................................................................................................................................................................................................................................	19	13	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................ATATTGTTAATTTTACTTTAAC-------------------------------------------------CT.............................................................................................................................................................................................................................................................................................................................	24	13	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................GATGA---------TT-------------------------TGAAAC---------------TGCAA-------.................................................................................................................................................................................................................................................	18	13	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TCCTTTTATT-----TATT------TA-------TTTTAAT---------TTTTTTTTTTTT---------------------------------------------------------------------------------------------------------------TTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATTA-----------------------------------TTATTATTTTTTTATTTTTTATT----ATTATTTTAA---------------------------------------------------G------------------------------AATTATTTTAAGTAT-----------------------------GCTAA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

CTTATATATA-----T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-----------------------------------------------------CCTGT----TATTTTTCAG---------------------------------------------------G------------------------------TATTGCTATAAATTTAATAACCTACGAGGATCGGTTTGATCTGCATCGC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droAna3

TTGACAAAAA-----T--------------------------------------------------------------------------------------------------------------------------------GAA-------AATT---------------TT---------AAAACTTGACAAA----------------------------------------------------------------------------------AATGAAAATTTTA---------------------------AAACTCATC-------------------------------------------------------------------TT-------------------------------------------------TTAGAATTTTGAAAAAACTTTTAGTTTTTGAAACATTTAAGTGTTCTG----T-TTAACTCATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

CTTAAAACTT-----T---------------------------------------ACTT-----------------------------TGCATTTTAAGATTTCGTTTTT---------------------TT----------TTTT-------AAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATAAATCATATATTTTATTT-----------------------------------TTATTGTTTGTTTTTGCTTCTTT----ATTAAA-----------------------------------------------------------------------------------------------------------------------TTTTGAATCAAATAAA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AGGGTATTATAATTTC---------AGTCAGAAG----------------CATT-TTTG--------------------------GCCTATTTGTTAATTTTTTACTTCTTAA------------------TA----------TATA-------ATTT---------------TT---------AAAATGCAAAGGA----------------------------------------------------------------------------------GGTGCCAAAGTTG--------------GCTTCTTTTCTTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAA-------AAACCTATTTTTTAACAATTCCCCTAAAATGGGAATAAATAATGAAACTATTAAATTTTTTGTTAAAT----ATTATTCTAA---------------------------------------------------A------------------------------AATA--TCTAAATTT-----------------------------AAAAA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TCATTTGGGT--------------------------------------------------------------------------------------------------------------ATGTAAA-------------------------------------------------------------CTTAATAGA----------------------------------------------------------------------------------ATTTAA--------------------------------------------------------------------------------------------------------------------------------------------GAATTT---------------------------------------------------------------------------C--TT-----------------------------------TAATGTTTAATCTTGTTTTATTT----A-T-TTAAAG---------------------------------------------------G------------------------------TATTGCTATTAATCTGATAACGTACGAGGATCGCTTTGACCTGCATCGA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TTTGCTTTCT-----T------------------------------------------------------------------------------------------------TCTTGTTGTTTTAAA-----------------------------------------------------------CTTTTATAAGA----------------------------------------------------------------------------------AATGAAGA-------------------------------ATGTTTTATTTCGCAATTTTGTTTGACA-------------------------------------------------CAAATTAAA---------AA-------------------------AAACTT-----------------------------------------------------------TTATTT-----------------------------------CAGCTTTCAATTTATTTTACATT----AAA----------------------------------------------------------------------------TGTTTTTTATTAAAA----------------------------TTATTCAAAATCGTAATAA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TAATTATATG-----A----------------TA----------------AATTGTTTA--------------------------------------ATTTTTTG------------GTCTCACAAA----AT----------TAT--------------------------------------TAGATTTAAGAAA----------------------------------------------------------------------------------AGAGAATTTTTCT--------------ACTCTAGTTAATAGAAGATATTTTAGAATTTTGATTCAAT-------------------------------------------------AATTTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGTGAACCTAAATTAAATTTTCATTCCAGTTACAA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AAGTAAAACT-----A---------TG-------ATTTAACATATCATTG--------------------------------------------------------------------------------------------TTT------------------------CC-----------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCAAAGTTTTAATCGACCTGTTTCTA------------------------------------------ACTTTGT---------TA-------------------------TG---T-----------------------------------------------------------TCATTT-----------------------------------CG------------------ATC----TAC-TTTAAG---------------------------------------------------G------------------------------TATTGCTATAAATCTGATAACCTACGAGGATCGGTTCGACCTGCATAGG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TTTTAGTTAT-----T---------TG-------ATTTAAT---------ATTTTT------------------CACAAAACCTAAGC--------------------------------A---------------------TAT------------------------GTTTTTGATAATTTCCA--TT-----------------------AA---------------------------------------------------------------------------------------------------------------TT-------------------------------------------------------------------TT-------------------------------------------------TTATAATTCTGTGAATCTTCCAAGTACTTAATGTATTTATGAGCTCTT----A-AAAAATTATTT-----------------------------------TAATCAAAAGTTAAATTTCCATT----AATATTTAAG---------------------------------------------------GATTTATCATGCTTTTATCAATT----------------------------TTTAAGAAGAACGTGCTAATTTCTTTTAG	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TCTTTTTGAA-----TATT------GATTAAAAA----------------GTGTGATTAATTTTGAATATTCTTGCAAAAATTCAAGTTTTATATTAACTTTATATTGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTAGAAAATT---------------------------------------------------------------------------------------------------------------------------------------------------TTTGAGTTAGACCTTATTAAACCTATTT-----------------------------------TTCCCATAAGTTGTTCTTTAGGT----ACTATCTTAG---------------------------------------------------G------------------------------AATCA--------------------------------------TTATGA	Size	Hit Count	Total Norm	Total
No Reads

dm3

TTTGTAATTT--------AACTATCGATTTTAAA----------------ATATTTTTA----------------------------------------------------------------------------------------------------------------------------------------------------------AATTTTTTTTATTTGTTTTGGTTTTCTAGTTTTTTAAATTCTTTATCAATTTTAAAACTTTTTTGGTTTTAA--------------------------------------------------------------------------------------------------------------------------------------------TTTTTTTTTTAGTTTTTAAAC-----------------------------------------------------------TTATTT-----------------------------------TAATTTTTAATCTTTTA--------------------------------------------------------------------------------------------------------------------------------------------TTTACTAACGT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...........................TTTTAAA----------------ATATTTTTA----------------------------------------------------------------------------------------------------------------------------------------------------------AATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................ATTTTTA----------------------------------------------------------------------------------------------------------------------------------------------------------AATTTTTTTTATT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................TTTTGGTTTTAA--------------------------------------------------------------------------------------------------------------------------------------------TTTTTA...........................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TTTAAGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTGCTATTAATTTGATAACCTACGAGGATCGGTTTGATCTGCATCGG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTATTAATTTGATAACCTACGAGGA...................	27	1	3.00	3	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGATAACCTACGAGGATCGGTT.............	24	1	2.00	2	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGAGGATCGGTTTGATCTGCATC..	25	1	2.00	2	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTATTAATTTGATAACCTACGAGGA...................	28	1	2.00	2	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTTGATAACCTACGAGGATCGGTT.............	27	1	2.00	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCTACGAGGATCGGTTTGATCTGC.....	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTATTAATTTGATAACC...........................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACGAGGATCGGTT.............	15	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTAATTTGATAACCTACGAGGA...................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTACGAGGATCGGTTTGATCTG......	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATTTGATAACCTACGAGGATCGGT..............	27	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGGTTTGATCTGCATCGG	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACGAGGATCGGTTTGATCTGC.....	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGAGGATCGGTTTGATCTG......	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGCTATTAATTTGATAACCTACGAGGA...................	30	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTACGAGGATCGGTTTGATCTGC.....	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTGATAACCTACGAGGATCGGT..............	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTACGAGGATCGGTTTGATCTGCA....	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAATTTGATAACCTACGAGGATCGG...............	27	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0

droSec2

ATTTTACATT-----T-----------------------------CATTT--------------------------------------------------------------------------------------------TTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCAAAC-------------------------------------------------AAGAATGGT---------CA-------------------------CCTAAA-----------------------------------------------------------TGAGTT-----------------------------------ACCTTTGCAATTTTTGTTTTATT----AATATTT-AG---------------------------------------------------G---------------------------A--AA-T---AATAATTTTAGACCT----------------------TGCGA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

TTGTTATATT-----T-TTAG-------------CTTCAAT---------TT-------------------------------------------------------------------------------------------TATCAAAAAAAGCTT---------------TA---------ATCGACCGAGAAA----------------------------------------------------------------------------------AAAGATCA-------------------CCTTTTGAATGTGGGTTTGATCCTAAATCTTCTTC-------------------------------------------------------TCGATTACCATTTTCATTA---------CGATTTT-----------------------------------------------------------------------------TTT-----------------------------------TAATCACTATTATTTTTTTAATT----TTTGATGTAG---------------------------------------------------A------------------------------AATTGCTTTAATTCT----------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----TTTGATGTAG---------------------------------------------------A------------------------------AATTGCTTT........................................	21	1	10.00	10	0	2	0	1	0	0	7	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----TTTGATGTAG---------------------------------------------------A------------------------------AATTGCTTTA.......................................	22	1	9.00	9	2	2	1	1	0	0	3	0	0	0	0
.......................................................................................................................................................................................................................................................................................AAAGATCA-------------------CCTTTTGAATGT............................................................................................................................................................................................................................................................................................................................................................................................................	20	1	6.00	6	0	1	1	0	0	0	4	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAATT----TTTGATGTAG---------------------------------------------------A------------------------------.................................................	19	1	6.00	6	0	4	1	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................ATTACCATTTTCATTA---------CGATT.............................................................................................................................................................................................................................................................................................	21	1	6.00	6	0	6	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----TTTGATGTAG---------------------------------------------------A------------------------------AATTGCTT.........................................	20	1	6.00	6	1	0	0	0	0	0	5	0	0	0	0
..........................................................................................................................................................................................................................................................................................GATCA-------------------CCTTTTGAATGTGGA.........................................................................................................................................................................................................................................................................................................................................................................................................	20	1	6.00	6	0	4	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATT----TTTGATGTAG---------------------------------------------------A------------------------------AATTGC...........................................	21	1	6.00	6	4	2	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTAG---------------------------------------------------A------------------------------AATTGCTTTAATT....................................	21	1	5.00	5	0	1	2	0	0	0	2	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----TTTGATGTAG---------------------------------------------------A------------------------------AATTGCT..........................................	19	1	4.00	4	3	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGATGTAG---------------------------------------------------A------------------------------AATTGCTTT........................................	20	1	4.00	4	0	2	0	1	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................TC-------------------------------------------------------TCGATTACCATTTTCATTA---------CG................................................................................................................................................................................................................................................................................................	23	1	4.00	4	0	4	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................AAGATCA-------------------CCTTTTGAATGT............................................................................................................................................................................................................................................................................................................................................................................................................	19	1	4.00	4	0	3	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................AAAGATCA-------------------CCTTTTGAATGTGGA.........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	4.00	4	0	2	1	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................GATCA-------------------CCTTTTGAATGTGG..........................................................................................................................................................................................................................................................................................................................................................................................................	19	1	4.00	4	0	4	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................CTTCTTC-------------------------------------------------------TCGATTACCATTTT................................................................................................................................................................................................................................................................................................................	21	1	4.00	4	0	3	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................A----------------------------------------------------------------------------------AAAGATCA-------------------CCTTTTGAATGTGGACC.......................................................................................................................................................................................................................................................................................................................................................................................................	26	1	4.00	4	0	0	4	0	0	0	0	0	0	0	0
.....ATATT-----T-TTAG-------------CTTCAAT---------TT-------------------------------------------------------------------------------------------TATCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	4.00	4	0	4	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................ATTACCATTTTCATTA---------CGAT..............................................................................................................................................................................................................................................................................................	20	1	4.00	4	0	2	0	0	0	0	2	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................CATTA---------CGATTTT-----------------------------------------------------------------------------TTT-----------------------------------TAAT....................................................................................................................................................................	19	1	4.00	4	0	4	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................AA----------------------------------------------------------------------------------AAAGATCA-------------------CCTTTTGAATGTGGA.........................................................................................................................................................................................................................................................................................................................................................................................................	25	1	3.00	3	0	1	0	1	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................TAAATCTTCTTC-------------------------------------------------------TCGATTACCA....................................................................................................................................................................................................................................................................................................................	22	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----TTTGATGTAG---------------------------------------------------A------------------------------AATTGC...........................................	18	1	3.00	3	2	0	0	1	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................CTTC-------------------------------------------------------TCGATTACCATTTTCATTA---------CG................................................................................................................................................................................................................................................................................................	25	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGATGTAG---------------------------------------------------A------------------------------AATTGCT..........................................	18	1	3.00	3	2	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATT----TTTGATGTAG---------------------------------------------------A------------------------------AATTGCTTT........................................	23	1	3.00	3	0	2	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGATGTAG---------------------------------------------------A------------------------------AATTGCTTTAATT....................................	24	1	3.00	3	0	0	0	0	0	0	3	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................AAATCTTCTTC-------------------------------------------------------TCGATTACC.....................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................AAAGATCA-------------------CCTTTTGAATGTGG..........................................................................................................................................................................................................................................................................................................................................................................................................	22	1	3.00	3	0	1	1	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................AATCTTCTTC-------------------------------------------------------TCGATTACCATTTT................................................................................................................................................................................................................................................................................................................	24	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................TAAATCTTCTTC-------------------------------------------------------TCGATTACCAT...................................................................................................................................................................................................................................................................................................................	23	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................ATTA---------CGATTTT-----------------------------------------------------------------------------TTT-----------------------------------TAATCACT................................................................................................................................................................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAATT----TTTGATGTAG---------------------------------------------------A------------------------------A................................................	20	1	2.00	2	1	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................AAA----------------------------------------------------------------------------------AAAGATCA-------------------CCTTTTGAATGTGG..........................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................A----------------------------------------------------------------------------------AAAGATCA-------------------CCTTTTGAATGTGGAC........................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................TTACCATTTTCATTA---------CGATTT............................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAATT----TTTGATGTAG---------------------------------------------------A------------------------------AATTGCT..........................................	26	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................AATCTTCTTC-------------------------------------------------------TCGATTACCATTT.................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................TACCATTTTCATTA---------CGATT.............................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATGTAG---------------------------------------------------A------------------------------AATTGCTTTAATT....................................	23	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT----TTTGATGTAG---------------------------------------------------A------------------------------AATTGCTTT........................................	22	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................A----------------------------------------------------------------------------------AAAGATCA-------------------CCTTTTGAATGTGGA.........................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
..................................................TT-------------------------------------------------------------------------------------------TATCAAAAAAAGCTT---------------TA---------ATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	1	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGATGTAG---------------------------------------------------A------------------------------AATTGCTTTA.......................................	21	1	2.00	2	1	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................CTAAATCTTCTTC-------------------------------------------------------TCGATTACCA....................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATT----TTTGATGTAG---------------------------------------------------A------------------------------AAT..............................................	19	1	2.00	2	1	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTAG---------------------------------------------------A------------------------------AATTGCTTTAATTCT----------------------------------	23	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
.....ATATT-----T-TTAG-------------CTTCAAT---------TT-------------------------------------------------------------------------------------------TATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAATT----TTTGATGTAG---------------------------------------------------A------------------------------AAT..............................................	22	1	2.00	2	1	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................AGATCA-------------------CCTTTTGAATGTGG..........................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................ATCTTCTTC-------------------------------------------------------TCGATTACCA....................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTAATT----TTTGATGTAG---------------------------------------------------A------------------------------AAT..............................................	23	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATT----TTTGATGTAG---------------------------------------------------A------------------------------AATTGCTTTA.......................................	25	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................AATCTTCTTC-------------------------------------------------------TCGATTACCC....................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................TA---------CGATTTT-----------------------------------------------------------------------------TTT-----------------------------------TAATCACT................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAG---------------------------------------------------A------------------------------AATTGCTTTAATT....................................	18	1	2.00	2	1	0	0	1	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................ATCTTCTTC-------------------------------------------------------TCGATTACCAT...................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	1	0	0	0	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATT----TTTGATGTAG---------------------------------------------------A------------------------------AATTGCT..........................................	22	1	2.00	2	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................TTC-------------------------------------------------------TCGATTACCATTTTCATTA---------CG................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGTAG---------------------------------------------------A------------------------------AATTGCTTTAAT.....................................	21	1	2.00	2	0	0	0	0	0	1	1	0	0	0	0
.....ATATT-----T-TTAG-------------CTTCAAT---------TT-------------------------------------------------------------------------------------------T..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................TTCATTA---------CGATTTT-----------------------------------------------------------------------------TTT-----------------------------------TAATCACTATT.............................................................................................................................................................	28	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................AA----------------------------------------------------------------------------------AAAGATCA-------------------CCTTTTGAATGTGGAC........................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................AA----------------------------------------------------------------------------------AAAGATCA-------------------CCTTTTGAATGT............................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................AATCTTCTTC-------------------------------------------------------TCGATTACCATT..................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................TAAATCTTCTTC-------------------------------------------------------TCGATTACC.....................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTAATT----TTTGATGTAG---------------------------------------------------A------------------------------AA...............................................	22	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................AAGATCA-------------------CCTTTTGAATGTGG..........................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCATTA---------CGATTTT-----------------------------------------------------------------------------TTT-----------------------------------TAATCACT................................................................................................................................................................	27	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................AATCTTCTTC-------------------------------------------------------TCGATTACCA....................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................TCTTC-------------------------------------------------------TCGATTACCATTTTCATTA---------CG................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGTAG---------------------------------------------------A------------------------------AATTGCTTTAATTC...................................	23	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................AGATCA-------------------CCTTTTGAATGTGGA.........................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----TTTGATGTAG---------------------------------------------------A------------------------------AATTGCTTTAATT....................................	25	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................CTTCTTC-------------------------------------------------------TCGATTACCATTTTCATTA---------C.................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................ATCTTCTTC-------------------------------------------------------TCGATTACCATTT.................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................TTCATTA---------CGATTTT-----------------------------------------------------------------------------TTT-----------------------------------TAAT....................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................CGAGAAA----------------------------------------------------------------------------------AAAGATCA-------------------CCTTTTGAAT..............................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATTTTCATTA---------CGAT..............................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATT----TTTGATGTAG---------------------------------------------------A------------------------------AAT..............................................	18	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................TTACCATTTTCATTA---------CGATT.............................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................AAGATCA-------------------CCTTTTGAATGTG...........................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0

droEre2

TGTTCCTAGG-----C----------------TG-----------------------------------------------------------------------------------AAGTTCTAAACTCAATAACTCAACTTAT------------------------CT-----------------------------------------------------------------------------------------------------------------------------------------------------------TAATCGGATTTTTAAGTGGCATACCTCTAAATGTTTCTGACGCAATTCTCTAAAAATCTGCATTCAAATTTAGAAAAT---------TATTTTTGTTAAATTTTT-----------------------------------------------------------------------------------------------------------------------TTGTAATTTTTTTTTGATATGATAATGTTG-AAGAAATTCAAAACAATTGAGAAATGTCCCAAGGCCGAAGTTCTAAACTTCATAACTCAACTTATCTTAATCGGAT-------------T--------------TTTAAGT---------GGCATACCTCTAA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGAT-------------T--------------TTTAAGT---------GGCATACCTCT..	25	20	0.05	1	1	0	0	0	0	0	0

dpe_517

scaffold_1:1367047-1367197 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads