ID:

dpe_516

 Coordinate:

scaffold_1:1324670-1324820 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dper\GL19168-cds]; exon [dper_GLEANR_21309:2]; intron [Dper\GL19168-in]

Repeatable elements

NameClassFamilyStrand
DNAREP1_DMRCHelitron-

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AAGAATATATATACTTTATGGGATTGGAAACGGTTGCTTCTGGGCGTTGCACGCATCCATTTTCCCATCAAATCTATACTCTTTTTGAGTATCGGGTATAACCAAAGTGCCAACAACGGGTAATTCGTCATATCATGCGCGAGAGGCGGGGGATGGGGCAGGGACGCAAATAATAATGTTCATTTCGACTTTTTCTTTCAGACGATGGAACACCAACTGTACTATATTCCGATCCAGAGGTTGAACCAAGT
**************************************************..((.(((....(((((((......((((((.....))))))..(((((.......)))))....((((.....)))).........(((.....)))...)))))))...))).))..................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 V042
embryo
 V057
head
 V111
male body		 M021
embryo
 V050
head
..........................................................................................................................................................GTGGAAGGGACGCAAATA............................................................................... 18 2 6 3.17 19 19 0 0 0 0 0
........................TGGAAACGGTTGCTTCTGGGCGT............................................................................................................................................................................................................ 23 0 1 1.00 1 0 0 0 1 0 0
...........................................................................................................................................................................................................................TACTATATTCCGATCCAGAGGTTGAAC..... 27 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................................................................TTCGACGATGGAACACCAACTGTACT............................ 26 2 1 1.00 1 0 0 0 0 1 0
..................................TGCTTCTGGGCGTTGCACGCATC.................................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0
................TATGGGATTGGAAACGGT......................................................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0
....................................................................................................................................................................................................TTTCGACGATGGAACACCAACTGTACA............................ 27 3 1 1.00 1 1 0 0 0 0 0
.................................................................................................................CAACGGGTAACTGGTCATA....................................................................................................................... 19 2 2 0.50 1 0 0 1 0 0 0
..................................................................................................................ATCGGGTAATTGGTCATATCG.................................................................................................................... 21 3 2 0.50 1 0 0 0 0 0 1
...............................................................................................................................................................AGGGACGCAAATAGTCAT.......................................................................... 18 2 2 0.50 1 0 0 1 0 0 0
.................................................................................................................CAACGGGTAATGGGTCATA....................................................................................................................... 19 2 2 0.50 1 0 1 0 0 0 0
........................................................................................................................................ACGCGAGAGGCGGGGTATGGAGC............................................................................................ 23 3 2 0.50 1 0 0 1 0 0 0
...........................AAACGGTTGCATCAGGGC.............................................................................................................................................................................................................. 18 2 3 0.33 1 1 0 0 0 0 0
........................................................................................................................................ACGTGAGAGGCAGGGGATGGGG............................................................................................. 22 3 4 0.25 1 0 1 0 0 0 0
......................................................................................................................................................GGGAGTGGCAGGGACGCAAAT................................................................................ 21 3 8 0.25 2 2 0 0 0 0 0
.........................................................................................................................................................TGTGGAAGGGACGCAAATAG.............................................................................. 20 3 7 0.14 1 0 0 0 1 0 0
......................................................................................................................................................GGAAGTGGAAGGGACGCAAAT................................................................................ 21 3 9 0.11 1 1 0 0 0 0 0
..................................................................................................................................................................GACGCCATTAATAATGTT....................................................................... 18 2 20 0.10 2 2 0 0 0 0 0
..........................................................................................................................................GCGAGATGCCGGGGATGG............................................................................................... 18 2 11 0.09 1 0 0 0 1 0 0
..........................................................................................................................................GTGAGAGGCAGGGGATGGAGC............................................................................................ 21 3 20 0.05 1 0 0 1 0 0 0
.................................................................................................................................................GCGGGGGATGGGGGCGGGA....................................................................................... 19 2 20 0.05 1 0 0 1 0 0 0
...........................................................................................................................................TGAGAGGCGGGGTATGGAGC............................................................................................ 20 3 20 0.05 1 0 1 0 0 0 0
....ATATATATACTTTATGGGAT................................................................................................................................................................................................................................... 20 0 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

TTCTTATATATATGAAATACCCTAACCTTTGCCAACGAAGACCCGCAACGTGCGTAGGTAAAAGGGTAGTTTAGATATGAGAAAAACTCATAGCCCATATTGGTTTCACGGTTGTTGCCCATTAAGCAGTATAGTACGCGCTCTCCGCCCCCTACCCCGTCCCTGCGTTTATTATTACAAGTAAAGCTGAAAAAGAAAGTCTGCTACCTTGTGGTTGACATGATATAAGGCTAGGTCTCCAACTTGGTTCA
**************************************************..((.(((....(((((((......((((((.....))))))..(((((.......)))))....((((.....)))).........(((.....)))...)))))))...))).))..................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total V042
embryo
 M021
embryo
 V057
head
...................................................................................................................................................................................................................TGGTTGAATTGATGTAAGGC.................... 20 3 5 0.20 1 1 0 0
...........................................................................................................................................................CCCGTCTCAGCGTTGATTA............................................................................. 19 3 16 0.19 3 0 3 0
.................................................................................................................................................................................CGACTAAAGCTGAAAAAGAT...................................................... 20 3 17 0.06 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_1:1324620-1324870 + dpe_516 AAGAATATATATACTTTATGGGATTGGAAACGGTT-GCTTCTGGGCGTTGCACGCATCCATTTTCCCATCAAATCTA---TACTCTTT-------------TTGAGTATCGGGTATAACCAAA-----GTGCCAAC---AA---CGGGTAATTCGT-----------------------------------------------------------------------------------------------------------------------------------------CATA-TCATGCGCGAGAGGCGGGGGATGGGGCAGGGACGCAA--ATAATAATGTTCATTTCGACTTTTTCTTTCAGACGAT-----GGAACACCAACTGTACTA--T-------------------------------------------------------------------------ATTCCGATCCA-GAGGTTG------AACCAAGT
dp5 Unknown_group_3:47521-47771 + AAGAATATATATACTTTATGGGTTTGGAAACGGTT-GCTTCTGGGCGTTACACGCATCCATTTTCCCATCAAATCTA---TACTCTTT-------------TTGAGTATCAGGTATAACCAAA-----GTGCCAAC---AA---CGGGTAATTCGT-----------------------------------------------------------------------------------------------------------------------------------------CATA-TCATGCGCGAGAGGCGGGGGATGGGGCAGGGACGCAA--ATAATAATGTTCATTTCGACTTTTTCTTTCAGACGAT-----GGAACACCAACTGTACTA--T-------------------------------------------------------------------------ATTCCGATCCA-GAGGTTG------AACCAAGT
droWil2 scf2_1100000004969:69452-69642 - AAGAATATATATACTTTATGGGGTCGGAAACGTCT-CCTTCTGTGCGTTACAAACATC-------TGACCAATTTTATAATACCCTCT-------------GC-----ATGGGTATAAAGAAAACA--------------------GTTTGTTCTACA------------------------------------------------------CACAGTGTGAGAAC----------GTGTAAA------------------------------------------------------------------------------------------------AATAATTGCTATTTTCACATTATTTTTTAGATAAT-----CATTATCTAATTGAACCA--T-------------------------------------------------------------------------TTCC-----------------------------
droVir3 scaffold_13049:4583350-4583590 + AAGAATATATATACTTTATGGGGTCGGAGATGCTT-CCTTCTGCCTGTTACATACATTTGGATTTCGCACAAATATAATATACCCTTATA-CCCATTTTAATTGGGTTCAGGGTATAAAAAACACAT------AA-------------------------------------------------------------------------AATTAGT------------------------------------------------------------------------------CA--------------------------------------------------------ACCAGTT----------------------G----------------CA----TGTGAGGCGGCCCGAGCCACGCCCTGTTTTTTTTGTTTTTGTTTTTTATGGTATTGCCCACCTGTTTTAATAGTCGCC---G-----CACACGACAACCAAGT
droMoj3 scaffold_6540:6422491-6422661 - AAGAATATATATACTTTATGGGGTCTGCGATGATT-CCTTCTGCCTGTTACATACTTT-------TCAC-AAAACCATTATACCCTGATTTCCCATTTTCAATGGGTTCAGGGTATAAAAAAA-----TAGAAAAG---AA---AAAGTAACTCGT-------------------------------------------------------------GATA------------------------------------------------------------------TG----------CAAGTTTGAGAGGCTTGGGAGG---------T------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGG-------TA
droGri2 scaffold_15203:1885768-1885919 + AAGAATATATATACTTTATGGGGTCGGAGATACTT-CCTTCTGCCTGTTACATACATT-------TGAACAAAACCATTATACCCTTTTTACCCATTTTTAATGGGTTCAGGGTATAATTACA-----AA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGAAAATAATTATTTCGGCG---------------------------------------------TGTGA----------------------------------------------------------------------------------CACACGA-------AA
droAna3 scaffold_13230:2660395-2660588 + AAGAATATATATACTTTATAGGGTCGGAGATGT---CCTTCACTGCGTTGCACACTTT-------TGACCAAAATTATAATACCCTCT-------------GC-----AAGGGTATAAAAAGAGTAACCA----GTAACGGGCCAAGATGGCT----------------------------------------------------------------------------------------------------------------------------------------------------TCCACGAGGGACTCCAGGCGTAGCACAAACT-AA--GCGGGAATGTTAACTTCTTTC---------------------------------------------TATG-------------------------------T-TCTTTC---------------------------------------------ATAT-------AATG
droBip1 scf7180000392051:1295-1516 + AAGAATATATATACTTTATAGGGTCGGAGATGTCT-CCTTCACTGCGTTGCACACTTT-------TGACCAAAATTATAATACCCTCT-------------GC-----AAGGGTATAAAAAAAACAAT-----------A------G-TTATTGAT-----------------------------------CGTGTTGCGGGAAAAACAATTGACAAGGTGAGAAA----------GTGTTTA---------------------AATAATTCCAAA---------AATCCAAC------------------------------------------AT-------------GACCAATTC--TTTGTCAGGGGGC-----AC-------AGTGTACTA--C-------------------------------------------------------------------------GATTCCGTCC---------------------AG
droKik1 scf7180000302407:54859-55004 + AAGAATATATATACTTTATAGGGTCGGAAACGTCTACCTTCACTGCGTTGCAAACTTC-------TGACTGAAATTATAATACCCT---------------GC-----AAGGGTATAATAAGAA-----T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT----------ATA---TAAA--------TT-----AT-----GG----------------CA----TGAGAGGC----TG-----------------------------------------GGACATGT-------AA---------G-----CAAAGGAT------AA
droFic1 scf7180000452235:4433-4634 - AAGAATATATATACTTTATGGGGTCTAAGGTGTCT-CCTTCACTCCGTTGCAAACTTC-------TGGCCAAAATTATAATACCCTT-TG-CTC------TGC-----AAGGGTATAAAAATCGGAG--TACT-AT---AT---CATATAGCT-GC-----------------------------------------------------------------------------------------------------------------------------------------CATAGTTATGATCAAAAAA-TATATATATAGAAATAACGGA---AATAAAATGATTACCTCGTTGTTTTTTATCAGACA------------------------------------------------------------------------------------------------------------------------------------AT
droEle1 scf7180000491199:1511966-1512142 + AAGAATATATATACTTTATAGGGTCGGAGATGTCT-CCTTCACTGCGTTGCAAACTTC-------TGACTGAAATTATAATACCCTCT-------------GC-----AAGGGTATAATAAAA-----CTGC-AA---TGG---AAGATGAATCGT--------------------------------------------------------------------------CCG------------------------------------------------------------CAGG-TCACGAGCACAAAATTGGCGATGCAAAAAAAATGCA------------------------------------------------------------A------------------------------------------------------------------------------------------TAAAATA------AGTTACAT
droRho1 scf7180000770177:52202-52463 - AAGAATATATATACTTTATGGGGTCGGAAACGTTT-CCTTTACTGCGTTACAATCTTC-------TGACCAAAATTATAATACCCTCT-------------GC-----AAGGGTATAAAAACA-----CAGA--A--ACACGTATAAATAAAT-----CCATTAGATTAGAATGAGACACTTTCTGCTAACT-------------ATCGGACCACAAA--------TACTCAAATTGTGTAAGAATACTTAATAT----------AGAACATAG----------------------------------------------------------------------------------------------------------AAACAATAACTGAATTT--TATCAAGA-------------------------------T-CCGCAA---------------------------ATATAATTATAAAAGAAAA------ATTAAATT
droBia1 scf7180000302433:107367-107591 + AAGAATATATGTACTATATGGGGTTGGAAACGCTT-CCTTCTACCTGTTACATACTTT-------CCGACGAATATAGTGTACCCTTTTA-CTC------TACGAGTAGCGGGAATAAACACCA-----C---TA---TC--------------------------------------------------------------------AGTTGACAGG--------TCGTCAAGAGGCGAAATTATTTTTAAGTTGATAGTAAGGTTATTT---------------------------------------------------------------------------ACTATAACGGTTTTTTGTTTTAAAAGAT-------------------------T-------------------------------------------------------------------------ATTTAAATATAGCAGATTC------AACTAATT
droTak1 scf7180000410690:4726-4944 + AAGAATATATATACTTTATGTGGTCGGAAACGTCT-CCTTCACTGCGTTGCAAACATC-------TGACTCAAATTATAATACCCCCT-------------AC-----AAGGGTATAAAAAAGG-G--------------------GTAT-GT-----CCAGCCTAC-GCAC-----------------------------GACAATCACTTTGA-----------------------------------CAACAAACAAAATGAACACC----------------ATTCATT------------------------------------------TC----------ATA---TAA-----CCTCTT-----AT-----GGAATATGAACT-------------------------C-----------------------------------------GCACATAT-------ATTCCAATCGA----GTCA------AATAAAAT
droEug1 scf7180000409918:22437-22684 - AAGAATATGTATACTTTATAGGGTCGGAAACGCTT-CCTTTTACCTGTTACATATTTT-------TCAACGAATCTAGTATACCCTTTTA-CTC------TACGAGTAACGGGTATAAAAATACCGAT-----------A------GCTTACCAGT---------------------------------------------GATAACCGGTTTGC-----------------------------------AAATTGATAATTTGGACATTTTAGAAACAAACTCTAATCCGTT------------------------------------------TT-------------TTTTAATTTTTTGCCTCTGACGGCACC-----------ACTGTGCAA--T----------------------------------------------------------GCCCAC-------------CATAGGA-AAGTTTG------AATCAAGC
dm3 chrX:20877424-20877580 + AAGAATATATATACCTTATATGGTCGGAAACGCTT-CATCCTGCCTGTTACATACTTT-------TCACCGAATCTAT-ATACCCTTTTA-GTC------TTCGAGTAACGGGTATAATACAAA-----T---------TA---AAAGTTACACGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGCAGA------------------CTATTAATTTTGTCAGACAGGGTA------------------------------------------------TG
droSim2 2l:22172920-22173100 - TAGAATATATATGCTTTATATAGTCGAAAAGGCTT-CCTTCTGCCTCGTGTATACTTT-------TCAACGGGGCTAGTATATCATTTTA-CTC------TACGAGTATCGGGTATAAAAACAACAGT-----------C--------------------------------------------------------------------AAGTTGG-----------------------------------TAAC------------------------------------------AGTTACGGTTAAATTA-TTGTATTATA-AAGGCACTTAA--ATTATAATTATTATTTCA------------------------------------------------------------------------------------------------------------------------------------------------------A
droSec2 scaffold_302:13502-13633 - AAGAATAAATACACTTTATTTGGTCGGAATCGCTT-CCTTCTGCCTGTTACATACTTT-------TCAACGAATCTAGTATAGCCTTT-------------------AACGAGTATAAAAATCC-----A---GA---TCA---GGGGCCAGTCGT-----------------------------------------------------------------------------------------------------------------------------------------CCTC-TCATCTAAAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG
droYak3 v2_chr2h_random_004:503867-504073 + AAGAATATATATACTTCATATGGTCAGAAACCCTT-CCTTCTGCCTGTTACATACTTT-------TCAACGAATC-AGTATACCCTTTTA-CTC------TCCGAGTAACGGGTATAAATATAC-----A---TA---TAA----------GT-----GCATTGAAT-GTAGGAAAACATTTTTCTTTTATCATC----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGTTTGGTTGAACGATTAAAAAAAAAATGTTATA--T-------------------------------------------------------------------------AT--------A-AAGTTTG------AATTTAAA
droEre2 scaffold_4845:14915928-14916096 + AAGAATATATATACTTTTTATGGTCGGAAACGTTT-CCTTCTGCCTGTTACATACTTT-------TCAAAGAATCTT-----------TA-CTC------TACGAGTAACGGGTATACAAATAATA--------------------GGTAATACTATG------------------------------------------------------TACAATATA----------------------------------------------------------------------------------TGCAAAGGGCTACGTATGTTACTGCGAAATGA--AT-ATATTTTCCATTTC--------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
AAGAATATATATACTTTATGGGATTGGAAACGGTT-GCTTCTGGGCGTTGCACGCATCCATTTTCCCATCAAATCTA---TACTCTTT-------------TTGAGTATCGGGTATAACCAAA-----GTGCCAAC---AA---CGGGTAATTCGT-----------------------------------------------------------------------------------------------------------------------------------------CATA-TCATGCGCGAGAGGCGGGGGATGGGGCAGGGACGCAA--ATAATAATGTTCATTTCGACTTTTTCTTTCAGACGAT-----GGAACACCAACTGTACTA--T-------------------------------------------------------------------------ATTCCGATCCA-GAGGTTG------AACCAAGTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
........................TGGAAACGGTT-GCTTCTGGGCGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
........................................................................................................................................................................................................................................................................................................................................................................................................TACTA--T-------------------------------------------------------------------------ATTCCGATCCA-GAGGTTG------AAC.....2711.001010000
..................................T-GCTTCTGGGCGTTGCACGCATC................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
................TATGGGATTGGAAACGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000
....ATATATATACTTTATGGGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051010000
dp5
AAGAATATATATACTTTATGGGTTTGGAAACGGTT-GCTTCTGGGCGTTACACGCATCCATTTTCCCATCAAATCTA---TACTCTTT-------------TTGAGTATCAGGTATAACCAAA-----GTGCCAAC---AA---CGGGTAATTCGT-----------------------------------------------------------------------------------------------------------------------------------------CATA-TCATGCGCGAGAGGCGGGGGATGGGGCAGGGACGCAA--ATAATAATGTTCATTTCGACTTTTTCTTTCAGACGAT-----GGAACACCAACTGTACTA--T-------------------------------------------------------------------------ATTCCGATCCA-GAGGTTG------AACCAAGTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................................................................................................................................................................................................................................................................................................................................................................ACCAACTGTACTA--T-------------------------------------------------------------------------ATTCCGATCC.......................2418.0080110000600
...............................................................................................................................................................................................................................................................................................................................................................................................CACCAACTGTACTA--T-------------------------------------------------------------------------ATTCCGATCCA-.....................2614.0040000000400
.................................................................................................................................................................................................................................................................................................................................................................................................CCAACTGTACTA--T-------------------------------------------------------------------------ATTCCGATCCA-GA...................2612.0020200000000
............................................................................................................................................................................................................................................................................................................................................................................................GAACACCAACTGTACTA--T-------------------------------------------------------------------------ATTCCGATCC.......................2812.0020000000020
.................................................................................................................................................................................................................................................................................................................................................................................................CCAACTGTACTA--T-------------------------------------------------------------------------ATTCCGAT.........................2111.0010100000000
.......................TTGGAAACGGTT-GCTTCTGGGCGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000001000
................................................................................................................................................................................................................................................................................................................................................................................................ACCAACTGTACTA--T-------------------------------------------------------------------------ATTCCGATAA.......................2411.0010100000000
..........................GAAACGGTT-GCTTCTGGGCGTTAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000010
.........................................................................................................................................................CGT-----------------------------------------------------------------------------------------------------------------------------------------CATA-TCATGCGCGAGAGG..................................................................................................................................................................................................2111.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGATCCA-GAGGTTG------AACCA...2111.0010000001000
..........................................................................................................................................................................................................................................................................................................................................................................................................CTA--T-------------------------------------------------------------------------ATTCCGATCCA-GAGG.................1911.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................CCAACTGTACTA--T-------------------------------------------------------------------------ATTCCGATCC.......................2311.0010100000000
......ATATATACTTTATGGGTTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
droWil2
AAGAATATATATACTTTATGGGGTCGGAAACGTCT-CCTTCTGTGCGTTACAAACATC-------TGACCAATTTTATAATACCCTCT-------------GC-----ATGGGTATAAAGAAAACA--------------------GTTTGTTCTACA------------------------------------------------------CACAGTGTGAGAAC----------GTGTAAA------------------------------------------------------------------------------------------------AATAATTGCTATTTTCACATTATTTTTTAGATAAT-----CATTATCTAATTGAACCA--T-------------------------------------------------------------------------TTCC-----------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................TCTGTGCGTTACAAACATC-------TGACCAATT................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.15303000
........................................................................TTTTATAATACCCTCT-------------GC-----ATG...........................................................................................................................................................................................................................................................................................................................................................................................................21100.10100010
droVir3
AAGAATATATATACTTTATGGGGTCGGAGATGCTT-CCTTCTGCCTGTTACATACATTTGGATTTCGCACAAATATAATATACCCTTATA-CCCATTTTAATTGGGTTCAGGGTATAAAAAACACAT------AA-------------------------------------------------------------------------AATTAGT------------------------------------------------------------------------------CA--------------------------------------------------------ACCAGTT----------------------G----------------CA----TGTGAGGCGGCCCGAGCCACGCCCTGTTTTTTTTGTTTTTGTTTTTTATGGTATTGCCCACCTGTTTTAATAGTCGCC---G-----CACACGACAACCAAGTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................................................TACATTTGGATTTCGCACAAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.70140000000000000000000000000000120000002000000000000000000000000000
........................CGGAGATGCTT-CCTTCTGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.306000000000000000000000000000000000000000000000000000000000000006
....................................................TACATTTGGATTTCGCACAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.306000000000000000000000000400010100000000000000000000000000000000
.......TATATACTTTATGGGGTCGGAGATGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.255000000000000000000000000000010040000000000000000000000000000000
....................................................TACATTTGGATTTCGCACAAATA...............................................................................................................................................................................................................................................................................................................................................................................................................................................23200.255000000000000000000000000200200000000010000000000000000000000000
....................................................TACATTTGGATTTCGCACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.255000000400000000000000001000000000000000000000000000000000000000
....................................................TACATTTGGATTTCGCAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.153000000000000000000003000000000000000000000000000000000000000000
..............TTTATGGGGTCGGAGATGCTT-CCTTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.153000000000000000000000000000000000003000000000000000000000000000
....................................................TACATTTGGATTTCGCACAAATATAA............................................................................................................................................................................................................................................................................................................................................................................................................................................2670.141000000000000000000000000000000000000010000000000000000000000000
....................................................TACATTTGGATTTCGCACAAATATA.............................................................................................................................................................................................................................................................................................................................................................................................................................................2580.131000000000000000000000000000100000000000000000000000000000000000
....................................................TACATTTGGATTTCGCACAAATAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................2480.131000000000000000000000000000000000010000000000000000000000000000
........ATATACTTTATGGGGTCGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102000010000000000000000000000000010000000000000000000000000000000
AAGAATATATATACTTTATGGGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.102000000000000000000000000000002000000000000000000000000000000000
.............................................TGTTACATACATTTGGATTTCGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.102000000000000000000000000000002000000000000000000000000000000000
.......................TCGGAGATGCTT-CCTTCTGCCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.102000000000000000000000000000000000200000000000000000000000000000
........................................CTGCCTGTTACATACATTTGGATTTCGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.102000000000000000000000000000110000000000000000000000000000000000
................................................TACATACATTTGGATTTCGCACAAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.102000000000000000000000000002000000000000000000000000000000000000
....................................................TACATTTGGATTTCGCACAAATATAT............................................................................................................................................................................................................................................................................................................................................................................................................................................26110.091000000000000000000000000000100000000000000000000000000000000000
....................................................TACATTTGGATTTCGCACAAATATGT............................................................................................................................................................................................................................................................................................................................................................................................................................................26110.091000000000000000000000000000000000000001000000000000000000000000
....ATATATATACTTTATGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051000000000000000000000000100000000000000000000000000000000000000
...........TACTTTATGGGGTCGGAGATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000100000000000000000000000000000000
................TATGGGGTCGGAGATGCTT-CCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000001000000000000000000000000000000000
.........TATACTTTATGGGGTCGGAGATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000000000000000100000000000000000000000
..................TGGGGTCGGAGATGCTT-C.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051000000000000000000000000000000010000000000000000000000000000000
........................................................................ATATAATATACCCTTATA-CCC............................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
..........ATACTTTATGGGGTCGGAGATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000001000000000000000000000000000000000000000000000000000000000
.............................................TGTTACATACATTTGGATTTCGCACAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051000000000000000000000000100000000000000000000000000000000000000
...............TTATGGGGTCGGAGATGCTT-CCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
......ATATATACTTTATGGGGTCGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000010000000000000000000000000000000000
............................................CTGTTACATACATTTGGATTTCGCACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051000000000000000000000000000100000000000000000000000000000000000
............................................CTGTTACATACATTTGGATTTCGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000000000000100000000000000000000000000000
...........................................CCTGTTACATACATTTGGATTTCGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000010000000000000000000000000000000000
.....................................CTTCTGCCTGTTACATACATTTGGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051001000000000000000000000000000000000000000000000000000000000000
...............................................TTACATACATTTGGATTTCGCACAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000010000000000000000000000000000000000000
.....................................CTTCTGCCTGTTACATACATTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000000010000000000000000000000000000000
....................................................TACATTTGGATTTCGCACAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
AAGAATATATATACTTTATGGGGTCTGCGATGATT-CCTTCTGCCTGTTACATACTTT-------TCAC-AAAACCATTATACCCTGATTTCCCATTTTCAATGGGTTCAGGGTATAAAAAAA-----TAGAAAAG---AA---AAAGTAACTCGT-------------------------------------------------------------GATA------------------------------------------------------------------TG----------CAAGTTTGAGAGGCTTGGGAGG---------T------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGG-------TASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............TTTATGGGGTCTGCGATGATT-CCTTCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.102200000
..............................TGATT-CCTTCTGCCTGTTACAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051100000
........................CTGCGATGATT-CCTTCTGCCTGTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051100000
droGri2
AAGAATATATATACTTTATGGGGTCGGAGATACTT-CCTTCTGCCTGTTACATACATT-------TGAACAAAACCATTATACCCTTTTTACCCATTTTTAATGGGTTCAGGGTATAATTACA-----AA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGAAAATAATTATTTCGGCG---------------------------------------------TGTGA----------------------------------------------------------------------------------CACACGA-------AASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..................................T-CCTTCTGCCTGTTACATACATT-------T........................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05110
droAna3
AAGAATATATATACTTTATAGGGTCGGAGATGT---CCTTCACTGCGTTGCACACTTT-------TGACCAAAATTATAATACCCTCT-------------GC-----AAGGGTATAAAAAGAGTAACCA----GTAACGGGCCAAGATGGCT----------------------------------------------------------------------------------------------------------------------------------------------------TCCACGAGGGACTCCAGGCGTAGCACAAACT-AA--GCGGGAATGTTAACTTCTTTC---------------------------------------------TATG-------------------------------T-TCTTTC---------------------------------------------ATAT-------AATGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................................................................................................................................................................................................................................................................................................CACGAGGGACTCCAGGCGTAGCAC...................................................................................................................................................................................2411.001010000
...........TACTTTATAGGGTCGGAGATGT---CC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24100.404040000
.......TATATACTTTATAGGGTCGGAGATGT---CC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2870.141010000
.........TATACTTTATAGGGTCGGAGATGT---CC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2690.111010000
..........ATACTTTATAGGGTCGGAGATGT---CC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2590.111010000
...............................GT---CCTTCACTGCGTTGCACACT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051100000
..............................TGT---CCTTCACTGCGTTGCACACTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051010000
..............................TGT---CCTTCACTGCGTTGCACACTTT-------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051010000
..............................TGT---CCTTCACTGCGTTGCACAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051010000
........................................CACTGCGTTGCACACTTT-------TGACCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051010000
..............................TGT---CCTTCACTGCGTTGCACACC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051010000
..............................TGT---CCTTCACTGCGTTGCACACT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051010000
droBip1
AAGAATATATATACTTTATAGGGTCGGAGATGTCT-CCTTCACTGCGTTGCACACTTT-------TGACCAAAATTATAATACCCTCT-------------GC-----AAGGGTATAAAAAAAACAAT-----------A------G-TTATTGAT-----------------------------------CGTGTTGCGGGAAAAACAATTGACAAGGTGAGAAA----------GTGTTTA---------------------AATAATTCCAAA---------AATCCAAC------------------------------------------AT-------------GACCAATTC--TTTGTCAGGGGGC-----AC-------AGTGTACTA--C-------------------------------------------------------------------------GATTCCGTCC---------------------AGSizeHit CountTotal NormTotal
No Reads
droKik1
AAGAATATATATACTTTATAGGGTCGGAAACGTCTACCTTCACTGCGTTGCAAACTTC-------TGACTGAAATTATAATACCCT---------------GC-----AAGGGTATAATAAGAA-----T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT----------ATA---TAAA--------TT-----AT-----GG----------------CA----TGAGAGGC----TG-----------------------------------------GGACATGT-------AA---------G-----CAAAGGAT------AASizeHit CountTotal NormTotal
No Reads
droFic1
AAGAATATATATACTTTATGGGGTCTAAGGTGTCT-CCTTCACTCCGTTGCAAACTTC-------TGGCCAAAATTATAATACCCTT-TG-CTC------TGC-----AAGGGTATAAAAATCGGAG--TACT-AT---AT---CATATAGCT-GC-----------------------------------------------------------------------------------------------------------------------------------------CATAGTTATGATCAAAAAA-TATATATATAGAAATAACGGA---AATAAAATGATTACCTCGTTGTTTTTTATCAGACA------------------------------------------------------------------------------------------------------------------------------------ATSizeHit CountTotal NormTotal
No Reads
droEle1
AAGAATATATATACTTTATAGGGTCGGAGATGTCT-CCTTCACTGCGTTGCAAACTTC-------TGACTGAAATTATAATACCCTCT-------------GC-----AAGGGTATAATAAAA-----CTGC-AA---TGG---AAGATGAATCGT--------------------------------------------------------------------------CCG------------------------------------------------------------CAGG-TCACGAGCACAAAATTGGCGATGCAAAAAAAATGCA------------------------------------------------------------A------------------------------------------------------------------------------------------TAAAATA------AGTTACATSizeHit CountTotal NormTotal
No Reads
droRho1
AAGAATATATATACTTTATGGGGTCGGAAACGTTT-CCTTTACTGCGTTACAATCTTC-------TGACCAAAATTATAATACCCTCT-------------GC-----AAGGGTATAAAAACA-----CAGA--A--ACACGTATAAATAAAT-----CCATTAGATTAGAATGAGACACTTTCTGCTAACT-------------ATCGGACCACAAA--------TACTCAAATTGTGTAAGAATACTTAATAT----------AGAACATAG----------------------------------------------------------------------------------------------------------AAACAATAACTGAATTT--TATCAAGA-------------------------------T-CCGCAA---------------------------ATATAATTATAAAAGAAAA------ATTAAATTSizeHit CountTotal NormTotal
No Reads
droBia1
AAGAATATATGTACTATATGGGGTTGGAAACGCTT-CCTTCTACCTGTTACATACTTT-------CCGACGAATATAGTGTACCCTTTTA-CTC------TACGAGTAGCGGGAATAAACACCA-----C---TA---TC--------------------------------------------------------------------AGTTGACAGG--------TCGTCAAGAGGCGAAATTATTTTTAAGTTGATAGTAAGGTTATTT---------------------------------------------------------------------------ACTATAACGGTTTTTTGTTTTAAAAGAT-------------------------T-------------------------------------------------------------------------ATTTAAATATAGCAGATTC------AACTAATTSizeHit CountTotal NormTotal
No Reads
droTak1
AAGAATATATATACTTTATGTGGTCGGAAACGTCT-CCTTCACTGCGTTGCAAACATC-------TGACTCAAATTATAATACCCCCT-------------AC-----AAGGGTATAAAAAAGG-G--------------------GTAT-GT-----CCAGCCTAC-GCAC-----------------------------GACAATCACTTTGA-----------------------------------CAACAAACAAAATGAACACC----------------ATTCATT------------------------------------------TC----------ATA---TAA-----CCTCTT-----AT-----GGAATATGAACT-------------------------C-----------------------------------------GCACATAT-------ATTCCAATCGA----GTCA------AATAAAATSizeHit CountTotal NormTotal
No Reads
droEug1
AAGAATATGTATACTTTATAGGGTCGGAAACGCTT-CCTTTTACCTGTTACATATTTT-------TCAACGAATCTAGTATACCCTTTTA-CTC------TACGAGTAACGGGTATAAAAATACCGAT-----------A------GCTTACCAGT---------------------------------------------GATAACCGGTTTGC-----------------------------------AAATTGATAATTTGGACATTTTAGAAACAAACTCTAATCCGTT------------------------------------------TT-------------TTTTAATTTTTTGCCTCTGACGGCACC-----------ACTGTGCAA--T----------------------------------------------------------GCCCAC-------------CATAGGA-AAGTTTG------AATCAAGCSizeHit CountTotal NormTotal
No Reads
dm3
AAGAATATATATACCTTATATGGTCGGAAACGCTT-CATCCTGCCTGTTACATACTTT-------TCACCGAATCTAT-ATACCCTTTTA-GTC------TTCGAGTAACGGGTATAATACAAA-----T---------TA---AAAGTTACACGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGCAGA------------------CTATTAATTTTGTCAGACAGGGTA------------------------------------------------TGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................................................TTT-------TCACCGAATCTAT-ATACCCTTT..................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TTATATGGTCGGAAACGCTT-C.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21201.30260000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000003000000000500000000120000000000000000000010000100020000000000000000000000000001000000000000000000000000000000000000000000000000000100000000000000000010000000020000100000000000000200020
................................................................................TACCCTTTTA-GTC------TTCGAGTAACGGG.........................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................A-----T---------TA---AAAGTTACACGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGCAGA------------------CTA.......................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................TATATGGTCGGAAACGCTT-CATCCTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TTATATGGTCGGAAACGCTT-CATCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................TAACGGGTATAATACAAA-----T---------TA---AAAGT.....................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TTATATGGTCGGAAACGCTT-CATC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................TATATGGTCGGAAACGCTT-CATCCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................TACACGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGCAGA------------------CTATTAATTTTGT.............................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................TATGGTCGGAAACGCTT-CATCCTGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TTATATGGTCGGAAACGCTT-CATCCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................T-------TCACCGAATCTAT-ATACCCTTTTA-GTC------......................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................TT-------TCACCGAATCTAT-ATACCCTTTTA-GTC------......................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TTATATGGTCGGAAACGCTT-CAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2360.8350000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TATACCTTATATGGTCGGAAACGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2530.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......TATATACCTTATATGGTCGGAAACGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TATATATACCTTATATGGTCGGAAACGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........TACCTTATATGGTCGGAAACGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2340.5020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...............TTATATGGTCGGAAACGCTT-CA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2240.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........TACCTTATATGGTCGGAAACGCTT-......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2440.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TTATATGGTCGGAAACGCTT-CAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2340.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................CGAGTAACGGGTATAATAC.................................................................................................................................................................................................................................................................................................................................................................................................1940.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TTATATGGTCGGAAACGCTT-......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1530000000000000000000000000000000000020000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TTATATGGTCGGAAACGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.................ATATGGTCGGAAACGCTT-C.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
........................................CTGCCTGTTACATACTTT-------TCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................TATATGGTCGGAAACGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TAGAATATATATGCTTTATATAGTCGAAAAGGCTT-CCTTCTGCCTCGTGTATACTTT-------TCAACGGGGCTAGTATATCATTTTA-CTC------TACGAGTATCGGGTATAAAAACAACAGT-----------C--------------------------------------------------------------------AAGTTGG-----------------------------------TAAC------------------------------------------AGTTACGGTTAAATTA-TTGTATTATA-AAGGCACTTAA--ATTATAATTATTATTTCA------------------------------------------------------------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................TTTTA-CTC------TACGAGTATCGGGTATA.....................................................................................................................................................................................................................................................................................................................................................................................................2540.75300000000201000000
..........................................................................................................................AACAGT-----------C--------------------------------------------------------------------AAGTTGG-----------------------------------TAAC------------------------------------------AGTTACGGT.........................................................................................................................................................................................................2720.50100000000100000000
.........................................TGCCTCGTGTATACTTT-------TCAACGGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.50100000010000000000
........................................................................................TA-CTC------TACGAGTATCGGGTATAAAAA.................................................................................................................................................................................................................................................................................................................................................................................................2640.25100000000100000000
.....................................................................................TTTTA-CTC------TACGAGTATC............................................................................................................................................................................................................................................................................................................................................................................................................1890.11100000000001000000
....................................................................................ATTTTA-CTC------TACGAGT...............................................................................................................................................................................................................................................................................................................................................................................................................16150.07100000000001000000
droSec2
AAGAATAAATACACTTTATTTGGTCGGAATCGCTT-CCTTCTGCCTGTTACATACTTT-------TCAACGAATCTAGTATAGCCTTT-------------------AACGAGTATAAAAATCC-----A---GA---TCA---GGGGCCAGTCGT-----------------------------------------------------------------------------------------------------------------------------------------CCTC-TCATCTAAAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................................................................................................................TCC-----A---GA---TCA---GGGGCCAGTCGT-----------------------------------------------------------------------------------------------------------------------------------------CCTC-................................................................................................................................................................................................................2511.0011000
........................................................TT-------TCAACGAATCTAGTATAGCCTTT-------------------...............................................................................................................................................................................................................................................................................................................................................................................................................2540.2511000
........................................................TT-------TCAACGAATCTAGTATAGCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................2350.2011000
........................................................TT-------TCAACGAATCTAGTATAGCCTT...................................................................................................................................................................................................................................................................................................................................................................................................................................2450.2011000
.................................................ACATACTTT-------TCAACGAATCTAGTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0511000
.................................TT-CCTTCTGCCTGTTACATACTTT-------T........................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0511000
droYak3
AAGAATATATATACTTCATATGGTCAGAAACCCTT-CCTTCTGCCTGTTACATACTTT-------TCAACGAATC-AGTATACCCTTTTA-CTC------TCCGAGTAACGGGTATAAATATAC-----A---TA---TAA----------GT-----GCATTGAAT-GTAGGAAAACATTTTTCTTTTATCATC----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGTTTGGTTGAACGATTAAAAAAAAAATGTTATA--T-------------------------------------------------------------------------AT--------A-AAGTTTG------AATTTAAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................................................TATACCCTTTTA-CTC------TCCGAGTAA.............................................................................................................................................................................................................................................................................................................................................................................................................2470.14100000000001
..............................................................................TATACCCTTTTA-CTC------TCCGAG................................................................................................................................................................................................................................................................................................................................................................................................................2180.13100000000001
..........................GAAACCCTT-CCTTCTGCCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05101000000000
droEre2
AAGAATATATATACTTTTTATGGTCGGAAACGTTT-CCTTCTGCCTGTTACATACTTT-------TCAAAGAATCTT-----------TA-CTC------TACGAGTAACGGGTATACAAATAATA--------------------GGTAATACTATG------------------------------------------------------TACAATATA----------------------------------------------------------------------------------TGCAAAGGGCTACGTATGTTACTGCGAAATGA--AT-ATATTTTCCATTTC--------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 06/08/2015 at 02:47 PM